CITATION.cff

cff-version: 1.2.0
title: "CIDER: detecting changes in gene regulatory networks that are associated with changes in phenotype"
message: "If you use this software, please cite it using these metadata."
type: software
# TODO before publishing: confirm the author list, add co-authors, add ORCIDs,
# and fill in the Zenodo DOI and the paper reference below.
authors:
  - family-names: Jung
    given-names: Woo Seok
    email: jungw@wustl.edu
  - family-names: Ding
    given-names: Mingyue
    email: d.mingyue@wustl.edu
  - family-names: Liao
    given-names: Lisa
    email: lisa.liao@wustl.edu
  - family-names: Erdenebaatar
    given-names: Zolboo
    email: e.zolboo@wustl.edu
  - family-names: Brent
    given-names: Michael
    email: brent@wustl.edu
abstract: >-
  Simulation and benchmark code for CIDER, a method that tests whether a
  transcription-factor to target-gene relationship is modulated by a
  quantitative trait. Includes the data generators for six interaction forms
  across simulated and real (GTEx whole-blood) transcription-factor expression,
  the four differential-correlation benchmark methods it is compared against
  (DGCA, DiffCorr, discordant, DINGO), the evaluation and figure code, and
  equivalence tests proving the consolidated scripts reproduce the original
  per-cell scripts byte-for-byte.
keywords:
  - differential co-expression
  - gene regulatory networks
  - transcription factors
  - generalized additive models
  - gene-environment interaction
  - benchmark
license: GPL-3.0-or-later
# repository-code: "https://github.com/<user>/<repo>"
# doi: "10.5281/zenodo.XXXXXXX"
# version: "1.0.0"
# date-released: "YYYY-MM-DD"