rnaseq_databases_documentation/mkdocs.yml at main · BrentLab/rnaseq_databases_documentation · GitHub

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site_name: Brentlab RNASeq Database(s)
site_description: Documentation on the Brentlab RNAseq databases
repo_url: https://github.com/BrentLab/rnaseq_databases_documentation
site_dir: site
copyright: Copyright &copy; 2020, <a href="https://github.com/cmatKhan">cmatKhan</a>.
dev_addr: 0.0.0.0:8001

plugins:
  - search

theme:
    name: readthedocs
    highlightjs: true
    include_homepage_in_sidebar: true
    navigation_depth: 4
    collapse_navigation: true
    titles_only: false
    sticky_navigation: true
    hljs_languages:
        - python
        - R
        - javascript

nav:
  - Home: 'index.md'
  - Development:
    - Install: Development/install.md
    - Contribute: Development/contribute.md
  - API:
    - Users: 'API/users.md'
    - Authentication: 'API/authentication.md'
    - Metadata API Instructions: API/metadata_api_instructions.md
  - Set Definitions:
    - Environmental Perturbation: 'Set_Definitions/environmental_perturbation.md'
  - Databases:
    - General Specifications: 'Databases/GeneralSpecs.md'
    - KN99 Tables:
      - 'Databases/KN99_Tables/baseNutrientMix.md'
      - 'Databases/KN99_Tables/nutrientMixMod.md'
      - 'Databases/KN99_Tables/AminoAcids.md'
      - 'Databases/KN99_Tables/GrowthConditions.md'
      - 'Databases/KN99_Tables/strain.md'
      - 'Databases/KN99_Tables/BioSample.md'
      - 'Databases/KN99_Tables/RnaSample.md'
      - 'Databases/KN99_Tables/S1cdnaSample.md'
      - 'Databases/KN99_Tables/S2cdnaSample.md'
      - 'Databases/KN99_Tables/Library.md'
      - 'Databases/KN99_Tables/FastqFiles.md'
      - 'Databases/KN99_Tables/QualityAssess.md'
      - 'Databases/KN99_Tables/Counts.md'
    - S288C_R64 Tables:
      - 'Databases/S288C_R64_Tables/BioSample.md'
      - 'Databases/S288C_R64_Tables/RnaSample.md'
      - 'Databases/S288C_R64_Tables/S1cdnaSample.md'
      - 'Databases/S288C_R64_Tables/S2cdnaSample.md'
      - 'Databases/S288C_R64_Tables/Library.md'
      - 'Databases/S288C_R64_Tables/FastqFiles.md'
      - 'Databases/S288C_R64_Tables/QualityAssess.md'
      - 'Databases/S288C_R64_Tables/Counts.md'