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"JLLWrappers", "Libdl"] +git-tree-sha1 = "446b23e73536f84e8037f5dce465e92275f6a308" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.2+0" +version = "1.5.7+1" -[[deps.ZygoteRules]] -deps = ["MacroTools"] -git-tree-sha1 = "8c1a8e4dfacb1fd631745552c8db35d0deb09ea0" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.2" +[[deps.eudev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c3b0e6196d50eab0c5ed34021aaa0bb463489510" +uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" +version = "3.2.14+0" [[deps.fzf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b6a34e0e0960190ac2a4363a1bd003504772d631" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.29.0+0" +version = "0.61.1+0" [[deps.libaom_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "850b06095ee71f0135d644ffd8a52850699581ed" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.13.3+0" [[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "125eedcb0a4a0bba65b657251ce1d27c8714e9d6" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" +version = "0.17.4+0" [[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl", "OpenBLAS_jll"] +deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.1.1+0" +version = "5.11.0+0" + +[[deps.libdecor_jll]] +deps = ["Artifacts", "Dbus_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pango_jll", "Wayland_jll", "xkbcommon_jll"] +git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" +uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" +version = "0.2.2+0" + +[[deps.libdrm_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libpciaccess_jll"] +git-tree-sha1 = "63aac0bcb0b582e11bad965cef4a689905456c03" +uuid = "8e53e030-5e6c-5a89-a30b-be5b7263a166" +version = "2.4.125+1" + +[[deps.libevdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "56d643b57b188d30cccc25e331d416d3d358e557" +uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" +version = "1.13.4+0" [[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "646634dd19587a56ee2f1199563ec056c5f228df" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" +version = "2.0.4+0" + +[[deps.libinput_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "91d05d7f4a9f67205bd6cf395e488009fe85b499" +uuid = "36db933b-70db-51c0-b978-0f229ee0e533" +version = "1.28.1+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "e51150d5ab85cee6fc36726850f0e627ad2e4aba" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.58+0" [[deps.libsodium_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "848ab3d00fe39d6fbc2a8641048f8f272af1c51e" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "011b0a7331b41c25524b64dc42afc9683ee89026" uuid = "a9144af2-ca23-56d9-984f-0d03f7b5ccf8" -version = "1.0.20+0" +version = "1.0.21+0" + +[[deps.libva_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll", "Xorg_libXext_jll", "Xorg_libXfixes_jll", "libdrm_jll"] +git-tree-sha1 = "7dbf96baae3310fe2fa0df0ccbb3c6288d5816c9" +uuid = "9a156e7d-b971-5f62-b2c9-67348b8fb97c" +version = "2.23.0+0" [[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] +git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" +version = "1.3.8+0" + +[[deps.mtdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b4d631fd51f2e9cdd93724ae25b2efc198b059b1" +uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" +version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.59.0+0" + +[[deps.oneTBB_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "1350188a69a6e46f799d3945beef36435ed7262f" +uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" +version = "2022.0.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" [[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" +version = "10164.0.1+0" [[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e7b67590c14d487e734dcb925924c5dc43ec85f3" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" +version = "4.1.0+0" [[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9ebfc140cc56e8c2156a15ceac2f0302e327ac0a" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "a1fc6507a40bf504527d0d4067d718f8e179b2b8" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+0" +version = "1.13.0+0" diff --git a/benchmarks/AdaptiveSDE/Project.toml b/benchmarks/AdaptiveSDE/Project.toml index 1513ce1a0..911332be9 100644 --- a/benchmarks/AdaptiveSDE/Project.toml +++ b/benchmarks/AdaptiveSDE/Project.toml @@ -6,6 +6,7 @@ Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" SDEProblemLibrary = "c72e72a9-a271-4b2b-8966-303ed956772e" SciMLBenchmarks = "31c91b34-3c75-11e9-0341-95557aab0344" +SciMLLogging = "a6db7da4-7206-11f0-1eab-35f2a5dbe1d1" StochasticDiffEq = "789caeaf-c7a9-5a7d-9973-96adeb23e2a0" [compat] @@ -14,4 +15,5 @@ ParallelDataTransfer = "0.5" Plots = "1.4" SDEProblemLibrary = "0.1, 1" SciMLBenchmarks = "0.1" -StochasticDiffEq = "6.23" +SciMLLogging = "1, 2" +StochasticDiffEq = "7" diff --git a/benchmarks/AdaptiveSDE/qmaxDetermination.jmd b/benchmarks/AdaptiveSDE/qmaxDetermination.jmd index 558a49fda..b42d21c33 100644 --- a/benchmarks/AdaptiveSDE/qmaxDetermination.jmd +++ b/benchmarks/AdaptiveSDE/qmaxDetermination.jmd @@ -10,6 +10,7 @@ means = Array{Float64}(undef, length(qs), 4) using StochasticDiffEq, SDEProblemLibrary, Random, Plots, ParallelDataTransfer, DiffEqMonteCarlo, Distributed +using SciMLLogging Random.seed!(99) full_prob = SDEProblemLibrary.oval2ModelExample(largeFluctuations = true, useBigs = false) @@ -41,7 +42,7 @@ println("Setup Complete") function runAdaptive(i, k) sol = solve(prob, SRIW1(), dt = 1/2^(8), abstol = 2.0^(-15), reltol = 2.0^(-10), - verbose = false, maxIters = Int(1e12), qmax = qs[k]) + verbose = SciMLLogging.None(), maxIters = Int(1e12), qmax = qs[k]) Int(any(isnan, sol[end]) || sol.t[end] != 1) end diff --git a/benchmarks/AstroChem/Project.toml b/benchmarks/AstroChem/Project.toml index 22279747b..f9101240c 100644 --- a/benchmarks/AstroChem/Project.toml +++ b/benchmarks/AstroChem/Project.toml @@ -1,18 +1,24 @@ [compat] BenchmarkTools = "1" -Catalyst = "15" -DiffEqDevTools = "2" +Catalyst = "16" +DiffEqDevTools = "3" LSODA = "0.7" LinearSolve = "3" NaNMath = "1" ODEInterface = "0.5" -ODEInterfaceDiffEq = "3" -OrdinaryDiffEq = "6" -OrdinaryDiffEqCore = "3" +ODEInterfaceDiffEq = "4" +OrdinaryDiffEq = "7" +OrdinaryDiffEqBDF = "2" +OrdinaryDiffEqCore = "4" +OrdinaryDiffEqExtrapolation = "2" +OrdinaryDiffEqFIRK = "2" +OrdinaryDiffEqRosenbrock = "2" +OrdinaryDiffEqSDIRK = "2" Plots = "1" RecursiveFactorization = "0.2" -Sundials = "5" -Symbolics = "6" +SciMLLogging = "1, 2" +Sundials = "6" +Symbolics = "7" [deps] BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" @@ -24,8 +30,14 @@ NaNMath = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" ODEInterface = "54ca160b-1b9f-5127-a996-1867f4bc2a2c" ODEInterfaceDiffEq = "09606e27-ecf5-54fc-bb29-004bd9f985bf" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" +OrdinaryDiffEqBDF = "6ad6398a-0878-4a85-9266-38940aa047c8" OrdinaryDiffEqCore = "bbf590c4-e513-4bbe-9b18-05decba2e5d8" +OrdinaryDiffEqExtrapolation = "becaefa8-8ca2-5cf9-886d-c06f3d2bd2c4" +OrdinaryDiffEqFIRK = "5960d6e9-dd7a-4743-88e7-cf307b64f125" +OrdinaryDiffEqRosenbrock = "43230ef6-c299-4910-a778-202eb28ce4ce" +OrdinaryDiffEqSDIRK = "2d112036-d095-4a1e-ab9a-08536f3ecdbf" Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" RecursiveFactorization = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" +SciMLLogging = "a6db7da4-7206-11f0-1eab-35f2a5dbe1d1" Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" diff --git a/benchmarks/AstroChem/astrochem.jmd b/benchmarks/AstroChem/astrochem.jmd index cd24b834a..69ac3e0ea 100644 --- a/benchmarks/AstroChem/astrochem.jmd +++ b/benchmarks/AstroChem/astrochem.jmd @@ -5,7 +5,9 @@ author: Gijs Vermariën and Chris Rackauckas ```julia using Catalyst +using SciMLLogging using OrdinaryDiffEq +using OrdinaryDiffEqBDF, OrdinaryDiffEqExtrapolation, OrdinaryDiffEqFIRK, OrdinaryDiffEqRosenbrock, OrdinaryDiffEqSDIRK using Plots using Symbolics using DiffEqDevTools @@ -329,7 +331,7 @@ setups = [ #Dict(:alg=>ImplicitEulerBarycentricExtrapolation(min_order = 5, threading = OrdinaryDiffEqCore.PolyesterThreads())), Dict(:alg=>ImplicitEulerBarycentricExtrapolation(min_order = 5, threading = false)) ] -wp = WorkPrecisionSet(oprob, abstols, reltols, setups; verbose = false, +wp = WorkPrecisionSet(oprob, abstols, reltols, setups; verbose = SciMLLogging.None(), save_everystep = false, appxsol = refsol, maxiters = Int(1e5), numruns = 10) plot(wp) ``` @@ -420,7 +422,7 @@ setups = [ #Dict(:alg=>ImplicitEulerBarycentricExtrapolation(min_order = 5, threading = OrdinaryDiffEqCore.PolyesterThreads())), #Dict(:alg=>ImplicitEulerBarycentricExtrapolation(min_order = 5, threading = false)), ] -wp = WorkPrecisionSet(oprob, abstols, reltols, setups; verbose = false, +wp = WorkPrecisionSet(oprob, abstols, reltols, setups; verbose = SciMLLogging.None(), save_everystep = false, appxsol = refsol, maxiters = Int(1e5), numruns = 10, print_names = true) plot(wp) diff --git a/benchmarks/AstroChem/nelson.jmd b/benchmarks/AstroChem/nelson.jmd index 162cc86d7..db5efdeb1 100644 --- a/benchmarks/AstroChem/nelson.jmd +++ b/benchmarks/AstroChem/nelson.jmd @@ -5,6 +5,7 @@ author: Nina De La Torre (Advised by Stella Offner) and Chris Rackauckas ```julia using OrdinaryDiffEq +using OrdinaryDiffEqBDF, OrdinaryDiffEqExtrapolation, OrdinaryDiffEqFIRK, OrdinaryDiffEqRosenbrock, OrdinaryDiffEqSDIRK using DiffEqDevTools, Plots using Sundials, LSODA using ODEInterface, ODEInterfaceDiffEq diff --git a/benchmarks/AutomaticDifferentiation/BrussScaling.jmd b/benchmarks/AutomaticDifferentiation/BrussScaling.jmd index c1a4d7e12..2a3a36525 100644 --- a/benchmarks/AutomaticDifferentiation/BrussScaling.jmd +++ b/benchmarks/AutomaticDifferentiation/BrussScaling.jmd @@ -7,6 +7,7 @@ From the paper [A Comparison of Automatic Differentiation and Continuous Sensiti ```julia using OrdinaryDiffEq, ReverseDiff, ForwardDiff, FiniteDiff, SciMLSensitivity +using OrdinaryDiffEqRosenbrock using LinearAlgebra, Tracker, Mooncake, Plots ``` @@ -216,17 +217,17 @@ makebrusselator!(dict, n) = get!(()->makebrusselator(n), dict, n) _adjoint_methods_iq = ntuple(2) do ii Alg = (InterpolatingAdjoint, QuadratureAdjoint)[ii] ( - user = Alg(autodiff = false, autojacvec = false), # user Jacobian - adjc = Alg(autodiff = true, autojacvec = false), # AD Jacobian - advj = Alg(autodiff = true, autojacvec = EnzymeVJP()) # AD vJ + user = Alg(autodiff = AutoFiniteDiff(), autojacvec = false), # user Jacobian + adjc = Alg(autodiff = AutoForwardDiff(), autojacvec = false), # AD Jacobian + advj = Alg(autodiff = AutoForwardDiff(), autojacvec = EnzymeVJP()) # AD vJ ) end |> NamedTuple{(:interp, :quad)} -# GaussAdjoint/GaussKronrodAdjoint do not support user-provided Jacobians (autodiff=false) +# GaussAdjoint/GaussKronrodAdjoint do not support user-provided Jacobians (autodiff=AutoFiniteDiff()) _adjoint_methods_g = ntuple(2) do ii Alg = (GaussAdjoint, GaussKronrodAdjoint)[ii] ( - adjc = Alg(autodiff = true, autojacvec = false), # AD Jacobian - advj = Alg(autodiff = true, autojacvec = EnzymeVJP()) # AD vJ + adjc = Alg(autodiff = AutoForwardDiff(), autojacvec = false), # AD Jacobian + advj = Alg(autodiff = AutoForwardDiff(), autojacvec = EnzymeVJP()) # AD vJ ) end |> NamedTuple{(:gauss, :gausskronrod)} @isdefined(ADJOINT_METHODS_IQ) || @@ -275,8 +276,8 @@ end #= reversediff = map(reversediffn) do n bfun, b_u0, b_p, brusselator_jac, brusselator_comp = makebrusselator!(PROBS, n) - @elapsed auto_sen_l2(bfun, b_u0, tspan, b_p, bt, (Rodas5(autodiff=false)); diffalg=(ReverseDiff.gradient), tols...) - t = @elapsed auto_sen_l2(bfun, b_u0, tspan, b_p, bt, (Rodas5(autodiff=false)); diffalg=(ReverseDiff.gradient), tols...) + @elapsed auto_sen_l2(bfun, b_u0, tspan, b_p, bt, (Rodas5(autodiff=AutoFiniteDiff())); diffalg=(ReverseDiff.gradient), tols...) + t = @elapsed auto_sen_l2(bfun, b_u0, tspan, b_p, bt, (Rodas5(autodiff=AutoFiniteDiff())); diffalg=(ReverseDiff.gradient), tols...) @show n,t t end @@ -301,7 +302,7 @@ is complete before we start timing. ```julia let n = first(csan) bfun, b_u0, b_p, brusselator_jac, brusselator_comp = makebrusselator!(PROBS, n) - solver = Rodas5(autodiff = false) + solver = Rodas5(autodiff = AutoFiniteDiff()) for alg in ADJOINT_METHODS_IQ f = SciMLSensitivity.alg_autodiff(alg) ? bfun : ODEFunction(bfun, jac = brusselator_jac) @@ -320,7 +321,7 @@ csa_iq = map(csan) do n @info "Running $alg" f = SciMLSensitivity.alg_autodiff(alg) ? bfun : ODEFunction(bfun, jac = brusselator_jac) - solver = Rodas5(autodiff = false) + solver = Rodas5(autodiff = AutoFiniteDiff()) @time diffeq_sen_l2(f, b_u0, tspan, b_p, bt, solver; sensalg = alg, tols...) t = @elapsed diffeq_sen_l2(f, b_u0, tspan, b_p, bt, solver; sensalg = alg, tols...) return t @@ -335,7 +336,7 @@ csa_g = map(csan) do n bfun, b_u0, b_p, brusselator_jac, brusselator_comp = makebrusselator!(PROBS, n) @time ts = map(ADJOINT_METHODS_G) do alg @info "Running $alg" - solver = Rodas5(autodiff = false) + solver = Rodas5(autodiff = AutoFiniteDiff()) @time diffeq_sen_l2(bfun, b_u0, tspan, b_p, bt, solver; sensalg = alg, tols...) t = @elapsed diffeq_sen_l2(bfun, b_u0, tspan, b_p, bt, solver; sensalg = alg, tols...) return t @@ -398,10 +399,10 @@ tols = (abstol = 1e-5, reltol = 1e-7) _adjoint_methods = ntuple(4) do ii Alg = (InterpolatingAdjoint, QuadratureAdjoint, GaussAdjoint, GaussKronrodAdjoint)[ii] ( - advj1 = Alg(autodiff = true, autojacvec = EnzymeVJP()), # AD vJ (Enzyme) - advj2 = Alg(autodiff = true, autojacvec = ReverseDiffVJP(false)), # AD vJ (ReverseDiff) - advj3 = Alg(autodiff = true, autojacvec = ReverseDiffVJP(true)), # AD vJ (Compiled ReverseDiff) - advj4 = Alg(autodiff = true, autojacvec = SciMLSensitivity.MooncakeVJP()) # AD vJ (Mooncake) + advj1 = Alg(autodiff = AutoForwardDiff(), autojacvec = EnzymeVJP()), # AD vJ (Enzyme) + advj2 = Alg(autodiff = AutoForwardDiff(), autojacvec = ReverseDiffVJP(false)), # AD vJ (ReverseDiff) + advj3 = Alg(autodiff = AutoForwardDiff(), autojacvec = ReverseDiffVJP(true)), # AD vJ (Compiled ReverseDiff) + advj4 = Alg(autodiff = AutoForwardDiff(), autojacvec = SciMLSensitivity.MooncakeVJP()) # AD vJ (Mooncake) ) end |> NamedTuple{(:interp, :quad, :gauss, :gausskronrod)} adjoint_methods = mapreduce(collect, vcat, _adjoint_methods) @@ -412,7 +413,7 @@ Warmup: compile all VJP backends before benchmarking. ```julia let n = first(csan) bfun, b_u0, b_p, brusselator_jac, brusselator_comp = makebrusselator!(PROBS, n) - solver = Rodas5(autodiff = false) + solver = Rodas5(autodiff = AutoFiniteDiff()) for alg in adjoint_methods f = SciMLSensitivity.alg_autodiff(alg) ? bfun : ODEFunction(bfun, jac = brusselator_jac) @@ -428,7 +429,7 @@ csavjp = map(csan) do n @info "Running $alg" f = SciMLSensitivity.alg_autodiff(alg) ? bfun : ODEFunction(bfun, jac = brusselator_jac) - solver = Rodas5(autodiff = false) + solver = Rodas5(autodiff = AutoFiniteDiff()) @time diffeq_sen_l2(f, b_u0, tspan, b_p, bt, solver; sensalg = alg, tols...) t = @elapsed diffeq_sen_l2(f, b_u0, tspan, b_p, bt, solver; sensalg = alg, tols...) return t @@ -738,17 +739,17 @@ end ```julia adjoint_ad_configs = [ ("Interp user-Jacobian", - "InterpolatingAdjoint(autodiff = false, autojacvec = false)", true), + "InterpolatingAdjoint(autodiff = AutoFiniteDiff(), autojacvec = false)", true), ("Interp AD-Jacobian", - "InterpolatingAdjoint(autodiff = true, autojacvec = false)", false), + "InterpolatingAdjoint(autodiff = AutoForwardDiff(), autojacvec = false)", false), ("Quad user-Jacobian", - "QuadratureAdjoint(autodiff = false, autojacvec = false)", true), + "QuadratureAdjoint(autodiff = AutoFiniteDiff(), autojacvec = false)", true), ("Quad AD-Jacobian", - "QuadratureAdjoint(autodiff = true, autojacvec = false)", false), + "QuadratureAdjoint(autodiff = AutoForwardDiff(), autojacvec = false)", false), ("Gauss AD-Jacobian", - "GaussAdjoint(autodiff = true, autojacvec = false)", false), + "GaussAdjoint(autodiff = AutoForwardDiff(), autojacvec = false)", false), ("GaussKronrod AD-Jacobian", - "GaussKronrodAdjoint(autodiff = true, autojacvec = false)", false), + "GaussKronrodAdjoint(autodiff = AutoForwardDiff(), autojacvec = false)", false), ] adjoint_ad_mem = map(adjoint_ad_configs) do (name, sensalg_str, needs_jac) @@ -757,7 +758,7 @@ adjoint_ad_mem = map(adjoint_ad_configs) do (name, sensalg_str, needs_jac) result = run_memory_benchmark(n, """ sensalg = $(sensalg_str) f = $(f_expr) - solver = Rodas5(autodiff = false) + solver = Rodas5(autodiff = AutoFiniteDiff()) diffeq_sen_l2(f, b_u0, tspan, b_p, bt, solver; sensalg = sensalg, tols...) t = @elapsed diffeq_sen_l2(f, b_u0, tspan, b_p, bt, solver; sensalg = sensalg, tols...) diff --git a/benchmarks/AutomaticDifferentiation/Manifest.toml b/benchmarks/AutomaticDifferentiation/Manifest.toml index 4a6582697..1fbdec7aa 100644 --- a/benchmarks/AutomaticDifferentiation/Manifest.toml +++ b/benchmarks/AutomaticDifferentiation/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.10" +julia_version = "1.11.9" manifest_format = "2.0" -project_hash = "4fce9904800ac523bcbf21da35164c243d232106" +project_hash = "5eae92480d06f7879d7ec7f4a468e681c86e6f2e" [[deps.ADTypes]] -git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" +git-tree-sha1 = "bbc22a9a08a0ef6460041086d8a7b27940ed4ffd" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.21.0" +version = "1.22.0" weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] [deps.ADTypes.extensions] @@ -39,9 +39,9 @@ version = "0.4.5" [[deps.Accessors]] deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] -git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +git-tree-sha1 = "2eeb2c9bef11013efc6f8f97f32ee59b146b09fb" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.43" +version = "0.1.44" [deps.Accessors.extensions] AxisKeysExt = "AxisKeys" @@ -63,9 +63,9 @@ version = "0.1.43" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" +git-tree-sha1 = "0761717147821d696c9470a7a86364b2fbd22fd8" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.4.0" +version = "4.5.2" weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] @@ -86,7 +86,7 @@ version = "0.2.3" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.ArnoldiMethod]] deps = ["LinearAlgebra", "Random", "StaticArrays"] @@ -96,11 +96,12 @@ version = "0.4.0" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" +git-tree-sha1 = "54f895554d05c83e3dd59f6a396671dae8999573" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.22.0" +version = "7.24.0" [deps.ArrayInterface.extensions] + ArrayInterfaceAMDGPUExt = "AMDGPU" ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" @@ -115,6 +116,7 @@ version = "7.22.0" ArrayInterfaceTrackerExt = "Tracker" [deps.ArrayInterface.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" @@ -140,12 +142,13 @@ weakdeps = ["SparseArrays"] [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +version = "1.11.0" [[deps.Atomix]] deps = ["UnsafeAtomics"] -git-tree-sha1 = "29bb0eb6f578a587a49da16564705968667f5fa8" +git-tree-sha1 = "b8651b2eb5796a386b0398a20b519a6a6150f75c" uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "1.1.2" +version = "1.1.3" [deps.Atomix.extensions] AtomixCUDAExt = "CUDA" @@ -159,14 +162,29 @@ version = "1.1.2" OpenCL = "08131aa3-fb12-5dee-8b74-c09406e224a2" oneAPI = "8f75cd03-7ff8-4ecb-9b8f-daf728133b1b" +[[deps.BandedMatrices]] +deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] +git-tree-sha1 = "02fa77c70ba84361b9bc9ff28523bd9d78519265" +uuid = "aae01518-5342-5314-be14-df237901396f" +version = "1.11.0" + + [deps.BandedMatrices.extensions] + BandedMatricesSparseArraysExt = "SparseArrays" + CliqueTreesExt = "CliqueTrees" + + [deps.BandedMatrices.weakdeps] + CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.BenchmarkTools]] -deps = ["Compat", "JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"] -git-tree-sha1 = "7fecfb1123b8d0232218e2da0c213004ff15358d" +deps = ["Compat", "JSON", "Logging", "PrecompileTools", "Printf", "Profile", "Statistics", "UUIDs"] +git-tree-sha1 = "9670d3febc2b6da60a0ae57846ba74670290653f" uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" -version = "1.6.3" +version = "1.8.0" [[deps.Bijections]] git-tree-sha1 = "a2d308fcd4c2fb90e943cf9cd2fbfa9c32b69733" @@ -188,31 +206,22 @@ git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" version = "0.1.9" -[[deps.BitTwiddlingConvenienceFunctions]] -deps = ["Static"] -git-tree-sha1 = "f21cfd4950cb9f0587d5067e69405ad2acd27b87" -uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" -version = "0.1.6" - [[deps.BlockArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] git-tree-sha1 = "0f606a9894e2bcda541ceb82a91a13c5d450ed97" uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" version = "1.9.3" +weakdeps = ["Adapt", "BandedMatrices"] [deps.BlockArrays.extensions] BlockArraysAdaptExt = "Adapt" BlockArraysBandedMatricesExt = "BandedMatrices" - [deps.BlockArrays.weakdeps] - Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - [[deps.BracketingNonlinearSolve]] deps = ["CommonSolve", "ConcreteStructs", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "fad1448f07155b299bfb925ebf22f5d553bdfb6e" +git-tree-sha1 = "7ad7171d693ae5552ac43862e7f6b61df4471c2b" uuid = "70df07ce-3d50-431d-a3e7-ca6ddb60ac1e" -version = "1.10.0" +version = "1.12.1" weakdeps = ["ChainRulesCore", "ForwardDiff"] [deps.BracketingNonlinearSolve.extensions] @@ -230,17 +239,11 @@ git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" version = "0.5.0" -[[deps.CPUSummary]] -deps = ["CpuId", "IfElse", "PrecompileTools", "Preferences", "Static"] -git-tree-sha1 = "f3a21d7fc84ba618a779d1ed2fcca2e682865bab" -uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" -version = "0.2.7" - [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d0efe2c6fdcdaa1c161d206aa8b933788397ec71" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.5+1" +version = "1.18.6+0" [[deps.Cassette]] git-tree-sha1 = "f8764df8d9d2aec2812f009a1ac39e46c33354b8" @@ -260,9 +263,9 @@ version = "1.73.0" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" +git-tree-sha1 = "12177ad6b3cad7fd50c8b3825ce24a99ad61c18f" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.26.0" +version = "1.26.1" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] @@ -278,12 +281,6 @@ weakdeps = ["Statistics"] [deps.Chairmarks.extensions] StatisticsChairmarksExt = ["Statistics"] -[[deps.CloseOpenIntervals]] -deps = ["Static", "StaticArrayInterface"] -git-tree-sha1 = "05ba0d07cd4fd8b7a39541e31a7b0254704ea581" -uuid = "fb6a15b2-703c-40df-9091-08a04967cfa9" -version = "0.1.13" - [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" @@ -301,13 +298,11 @@ deps = ["FixedPointNumbers", "Random"] git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" version = "0.12.1" +weakdeps = ["StyledStrings"] [deps.ColorTypes.extensions] StyledStringsExt = "StyledStrings" - [deps.ColorTypes.weakdeps] - StyledStrings = "f489334b-da3d-4c2e-b8f0-e476e12c162b" - [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" @@ -407,12 +402,6 @@ git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" version = "0.6.3" -[[deps.CpuId]] -deps = ["Markdown"] -git-tree-sha1 = "fcbb72b032692610bfbdb15018ac16a36cf2e406" -uuid = "adafc99b-e345-5852-983c-f28acb93d879" -version = "0.3.1" - [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" @@ -425,9 +414,9 @@ version = "1.16.0" [[deps.DataFrames]] deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "d8928e9169ff76c6281f39a659f9bca3a573f24c" +git-tree-sha1 = "5fab31e2e01e70ad66e3e24c968c264d1cf166d6" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.8.1" +version = "1.8.2" [[deps.DataFramesMeta]] deps = ["Chain", "DataFrames", "MacroTools", "OrderedCollections", "PrettyTables", "Reexport", "TableMetadataTools"] @@ -437,9 +426,9 @@ version = "0.15.6" [[deps.DataStructures]] deps = ["OrderedCollections"] -git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" +git-tree-sha1 = "e86f4a2805f7f19bec5129bc9150c38208e5dc23" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.19.3" +version = "0.19.4" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -449,6 +438,7 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" [[deps.Dbus_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] @@ -462,15 +452,22 @@ git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" version = "1.9.1" +[[deps.Dictionaries]] +deps = ["Indexing", "Random", "Serialization"] +git-tree-sha1 = "a55766a9c8f66cf19ffcdbdb1444e249bb4ace33" +uuid = "85a47980-9c8c-11e8-2b9f-f7ca1fa99fb4" +version = "0.4.6" + [[deps.DiffEqBase]] -deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "63613a73dd21fed5bf5ebb3e3b183e7e902b02b2" +deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "2d7ca58e6ce2d1f7a435773d73d111741e283070" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.210.0" +version = "7.1.0" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" DiffEqBaseChainRulesCoreExt = "ChainRulesCore" + DiffEqBaseDynamicQuantitiesExt = "DynamicQuantities" DiffEqBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] DiffEqBaseFlexUnitsExt = "FlexUnits" DiffEqBaseForwardDiffExt = ["ForwardDiff"] @@ -489,6 +486,7 @@ version = "6.210.0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" + DynamicQuantities = "06fc5a27-2a28-4c7c-a15d-362465fb6821" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FlexUnits = "76e01b6b-c995-4ce6-8559-91e72a3d4e95" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" @@ -505,9 +503,9 @@ version = "6.210.0" [[deps.DiffEqCallbacks]] deps = ["ConcreteStructs", "DataStructures", "DiffEqBase", "DifferentiationInterface", "LinearAlgebra", "Markdown", "PrecompileTools", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "f17b863c2d5d496363fe36c8d8535cc6a33c9952" +git-tree-sha1 = "51f445c25b80c26c83c61520cde214adf8c05227" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "4.12.0" +version = "4.17.0" weakdeps = ["Functors"] [deps.DiffEqCallbacks.extensions] @@ -515,9 +513,9 @@ weakdeps = ["Functors"] [[deps.DiffEqNoiseProcess]] deps = ["CommonSolve", "DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "PoissonRandom", "QuadGK", "Random", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "b879ca516034469f28becdf01f85f56b45f518b9" +git-tree-sha1 = "5b5fe6eb9e994ff0de4e84fe149b03c706fd6403" uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" -version = "5.27.0" +version = "5.31.0" [deps.DiffEqNoiseProcess.extensions] DiffEqNoiseProcessOptimExt = "Optim" @@ -541,9 +539,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +git-tree-sha1 = "d0250552e42bf7cc36479fd38a6e30004c9e8c2b" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.7.16" +version = "0.7.17" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -553,7 +551,7 @@ version = "0.7.16" DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] - DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGPUArraysCoreExt = ["GPUArraysCore", "Adapt"] DifferentiationInterfaceGTPSAExt = "GTPSA" DifferentiationInterfaceMooncakeExt = "Mooncake" DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] @@ -567,6 +565,7 @@ version = "0.7.16" DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] [deps.DifferentiationInterface.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" @@ -625,12 +624,13 @@ weakdeps = ["ChainRulesCore", "EnzymeCore"] [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" +git-tree-sha1 = "e421c1938fafab0165b04dc1a9dbe2a26272952c" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.123" +version = "0.25.125" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -648,10 +648,10 @@ uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" version = "0.9.5" [[deps.DomainSets]] -deps = ["CompositeTypes", "IntervalSets", "LinearAlgebra", "StaticArrays"] -git-tree-sha1 = "c249d86e97a7e8398ce2068dce4c078a1c3464de" +deps = ["CompositeTypes", "FunctionMaps", "IntervalSets", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "4599e0cd684f3ff6cbbab73c77553a3d01a8d74d" uuid = "5b8099bc-c8ec-5219-889f-1d9e522a28bf" -version = "0.7.16" +version = "0.7.18" [deps.DomainSets.extensions] DomainSetsMakieExt = "Makie" @@ -667,10 +667,10 @@ uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.6.0" [[deps.DynamicPolynomials]] -deps = ["Future", "LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Reexport", "Test"] -git-tree-sha1 = "3f50fa86c968fc1a9e006c07b6bc40ccbb1b704d" +deps = ["LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Reexport", "StarAlgebras", "Test"] +git-tree-sha1 = "5bfabc3827dfdd164359bad6800c115a81280c00" uuid = "7c1d4256-1411-5781-91ec-d7bc3513ac07" -version = "0.6.4" +version = "0.6.6" [[deps.EnumX]] git-tree-sha1 = "c49898e8438c828577f04b92fc9368c388ac783c" @@ -679,9 +679,9 @@ version = "1.0.7" [[deps.Enzyme]] deps = ["CEnum", "EnzymeCore", "Enzyme_jll", "GPUCompiler", "InteractiveUtils", "LLVM", "Libdl", "LinearAlgebra", "ObjectFile", "PrecompileTools", "Preferences", "Printf", "Random", "SparseArrays"] -git-tree-sha1 = "ea65d3121f09b5f31102542db9445163b7c99182" +git-tree-sha1 = "78704dd8d84c93a7f2ac5af0bbb95d26763ec9b9" uuid = "7da242da-08ed-463a-9acd-ee780be4f1d9" -version = "0.13.129" +version = "0.13.140" [deps.Enzyme.extensions] EnzymeBFloat16sExt = "BFloat16s" @@ -701,9 +701,9 @@ version = "0.13.129" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" [[deps.EnzymeCore]] -git-tree-sha1 = "990991b8aa76d17693a98e3a915ac7aa49f08d1a" +git-tree-sha1 = "c6ee69ee502060982d12dbaaf3d8fcb4e835a0d1" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.8.18" +version = "0.8.20" weakdeps = ["Adapt", "ChainRulesCore"] [deps.EnzymeCore.extensions] @@ -712,9 +712,9 @@ weakdeps = ["Adapt", "ChainRulesCore"] [[deps.Enzyme_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "fea21cfc452db42e3878aab62a76896e76d54d12" +git-tree-sha1 = "d3ad8f5eca369ac8803ff7db660028d47debc75d" uuid = "7cc45869-7501-5eee-bdea-0790c847d4ef" -version = "0.0.249+0" +version = "0.0.258+0" [[deps.EpollShim_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -730,19 +730,9 @@ version = "0.1.11" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "27af30de8b5445644e8ffe3bcb0d72049c089cf1" +git-tree-sha1 = "8f05e9a2e7c2e3eb524102bb2926c5743c07fbe1" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.7.3+0" - -[[deps.ExponentialUtilities]] -deps = ["Adapt", "ArrayInterface", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "PrecompileTools", "Printf", "SparseArrays", "libblastrampoline_jll"] -git-tree-sha1 = "cc294ead6a85e975a8519dd4a0a6cb294eeb18d1" -uuid = "d4d017d3-3776-5f7e-afef-a10c40355c18" -version = "1.30.0" -weakdeps = ["StaticArrays"] - - [deps.ExponentialUtilities.extensions] - ExponentialUtilitiesStaticArraysExt = "StaticArrays" +version = "2.8.0+0" [[deps.ExprTools]] git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" @@ -761,28 +751,30 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.5" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "01ba9d15e9eae375dc1eb9589df76b3572acd3f2" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libva_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "cac41ca6b2d399adfc95e51240566f8a60a80806" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "8.0.1+0" +version = "8.1.0+0" [[deps.FastBroadcast]] -deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "ab1b34570bcdf272899062e1a56285a53ecaae08" +deps = ["ArrayInterface", "LinearAlgebra"] +git-tree-sha1 = "7feeed2c9a7fa272189a5561bebf0c4ccaedb6ec" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.3.5" +version = "1.3.2" + + [deps.FastBroadcast.extensions] + FastBroadcastPolyesterExt = "Polyester" + FastBroadcastStaticExt = "Static" + + [deps.FastBroadcast.weakdeps] + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" + Static = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" version = "0.3.2" -[[deps.FastGaussQuadrature]] -deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "0044e9f5e49a57e88205e8f30ab73928b05fe5b6" -uuid = "442a2c76-b920-505d-bb47-c5924d526838" -version = "1.1.0" - [[deps.FastPower]] git-tree-sha1 = "862831f78c7a48681a074ecc9aac09f2de563f71" uuid = "a4df4552-cc26-4903-aec0-212e50a0e84b" @@ -808,6 +800,7 @@ version = "1.3.1" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" +version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] @@ -830,9 +823,9 @@ version = "1.8.0" [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "9340ca07ca27093ff68418b7558ca37b05f8aeb1" +git-tree-sha1 = "f7017a4f337f8df189fcce98e32b67a1298a2115" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.29.0" +version = "2.31.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -865,9 +858,9 @@ version = "1.3.7" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "eef4c86803f47dcb61e9b8790ecaa96956fdd8ae" +git-tree-sha1 = "cddeab6487248a39dae1a960fff0ac17b2a28888" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "1.3.2" +version = "1.3.3" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -875,9 +868,9 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "2c5512e11c791d1baed2049c5652441b28fc6a31" +git-tree-sha1 = "70329abc09b886fd2c5d94ad2d9527639c421e3e" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.4+0" +version = "2.14.3+1" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -885,6 +878,12 @@ git-tree-sha1 = "7a214fdac5ed5f59a22c2d9a885a16da1c74bbc7" uuid = "559328eb-81f9-559d-9380-de523a88c83c" version = "1.0.17+0" +[[deps.FunctionMaps]] +deps = ["CompositeTypes", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "31bd99a57edf98990d1c21486032963955450e8d" +uuid = "a85aefff-f8ca-4649-a888-c8e5398bc76c" +version = "0.1.2" + [[deps.FunctionProperties]] deps = ["Cassette", "DiffRules"] git-tree-sha1 = "bf7c740307eb0ee80e05d8aafbd0c5a901578398" @@ -897,10 +896,15 @@ uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" version = "1.1.3" [[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +deps = ["FunctionWrappers", "PrecompileTools", "TruncatedStacktraces"] +git-tree-sha1 = "c1b0c3a166a2a393257aa888787ca817532e14ce" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" +version = "1.8.0" +weakdeps = ["Enzyme", "EnzymeCore", "Mooncake"] + + [deps.FunctionWrappersWrappers.extensions] + FunctionWrappersWrappersEnzymeExt = ["Enzyme", "EnzymeCore"] + FunctionWrappersWrappersMooncakeExt = "Mooncake" [[deps.Functors]] deps = ["Compat", "ConstructionBase", "LinearAlgebra", "Random"] @@ -911,12 +915,13 @@ version = "0.5.2" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" +version = "1.11.0" [[deps.GLFW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] -git-tree-sha1 = "b7bfd56fa66616138dfe5237da4dc13bbd83c67f" +git-tree-sha1 = "9e0fb9e54594c47f278d75063980e43066e26e20" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.4.1+0" +version = "3.4.1+1" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -926,15 +931,15 @@ version = "0.2.0" [[deps.GPUCompiler]] deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "PrecompileTools", "Preferences", "Scratch", "Serialization", "TOML", "Tracy", "UUIDs"] -git-tree-sha1 = "966946d226e8b676ca6409454718accb18c34c54" +git-tree-sha1 = "fedfe5e7db7035271c3f58359007f971da1dde87" uuid = "61eb1bfa-7361-4325-ad38-22787b887f55" -version = "1.8.2" +version = "1.9.1" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Qt6Wayland_jll", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] -git-tree-sha1 = "ee0585b62671ce88e48d3409733230b401c9775c" +git-tree-sha1 = "44716a1a667cb867ee0e9ec8edc31c3e4aa5afdc" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.73.22" +version = "0.73.24" weakdeps = ["IJulia"] [deps.GR.extensions] @@ -942,15 +947,9 @@ weakdeps = ["IJulia"] [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "7dd7173f7129a1b6f84e0f03e0890cd1189b0659" +git-tree-sha1 = "be8a1b8065959e24fdc1b51402f39f3b6f0f6653" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.73.22+0" - -[[deps.GenericSchur]] -deps = ["LinearAlgebra", "Printf"] -git-tree-sha1 = "a694e2a57394e409f7a11ee0977362a9fafcb8c7" -uuid = "c145ed77-6b09-5dd9-b285-bf645a82121e" -version = "0.5.6" +version = "0.73.24+0" [[deps.GettextRuntime_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll"] @@ -978,9 +977,9 @@ version = "3.7.0+0" [[deps.Git_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "dc34a3e3d96b4ed305b641e626dc14c12b7824b8" +git-tree-sha1 = "0dd4cfb426924210c8f42742751cbde74b27bfa3" uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb" -version = "2.53.0+0" +version = "2.54.0+0" [[deps.Glib_jll]] deps = ["Artifacts", "GettextRuntime_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] @@ -996,9 +995,9 @@ version = "1.3.15+0" [[deps.Graphs]] deps = ["ArnoldiMethod", "DataStructures", "Inflate", "LinearAlgebra", "Random", "SimpleTraits", "SparseArrays", "Statistics"] -git-tree-sha1 = "031d63d09bd3e6e319df66bb466f5c3e8d147bee" +git-tree-sha1 = "7eb45fe833a5b7c51cf6d89c5a841d5967e44be3" uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" -version = "1.13.4" +version = "1.14.0" [deps.Graphs.extensions] GraphsSharedArraysExt = "SharedArrays" @@ -1014,9 +1013,9 @@ version = "1.0.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "PrecompileTools", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5e6fe50ae7f23d171f44e311c2960294aaa0beb5" +git-tree-sha1 = "51059d23c8bb67911a2e6fd5130229113735fc7e" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.19" +version = "1.11.0" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll"] @@ -1061,16 +1060,16 @@ git-tree-sha1 = "57e9ce6cf68d0abf5cb6b3b4abf9bedf05c939c0" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" version = "0.4.15" -[[deps.IfElse]] -git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" -uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" -version = "0.1.1" - [[deps.ImplicitDiscreteSolve]] deps = ["ConcreteStructs", "DiffEqBase", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "OrdinaryDiffEqCore", "Reexport", "SciMLBase", "SymbolicIndexingInterface"] -git-tree-sha1 = "2a8b83132a262302305f359d3b50cba598f9785e" +git-tree-sha1 = "dc9f649cbcdd4f2b402d7cbbd5cf61517b45ad5a" uuid = "3263718b-31ed-49cf-8a0f-35a466e8af96" -version = "1.7.0" +version = "2.0.0" + +[[deps.Indexing]] +git-tree-sha1 = "ce1566720fd6b19ff3411404d4b977acd4814f9f" +uuid = "313cdc1a-70c2-5d6a-ae34-0150d3930a38" +version = "1.1.1" [[deps.Inflate]] git-tree-sha1 = "d1b1b796e47d94588b3757fe84fbf65a5ec4a80d" @@ -1104,11 +1103,12 @@ version = "2025.2.0+0" [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" +version = "1.11.0" [[deps.IntervalSets]] -git-tree-sha1 = "d966f85b3b7a8e49d034d27a189e9a4874b4391a" +git-tree-sha1 = "79d6bd28c8d9bccc2229784f1bd637689b256377" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.13" +version = "0.7.14" weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] @@ -1167,25 +1167,26 @@ version = "0.2.1" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "b6893345fd6658c8e475d40155789f4860ac3b21" +git-tree-sha1 = "c0c9b76f3520863909825cbecdef58cd63de705a" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.1.4+0" +version = "3.1.5+0" [[deps.JumpProcesses]] deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "PoissonRandom", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "SymbolicIndexingInterface"] -git-tree-sha1 = "3dee0073e2512598de97a98f5f30126cd7bdd9a7" +git-tree-sha1 = "2a8e5b9b90ef0da05f61904d0a39a7b1c0a83310" uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" -version = "9.22.2" -weakdeps = ["Adapt", "FastBroadcast", "KernelAbstractions"] +version = "9.28.0" +weakdeps = ["Adapt", "KernelAbstractions", "OrdinaryDiffEqCore"] [deps.JumpProcesses.extensions] JumpProcessesKernelAbstractionsExt = ["Adapt", "KernelAbstractions"] + JumpProcessesOrdinaryDiffEqCoreExt = "OrdinaryDiffEqCore" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "MacroTools", "PrecompileTools", "Requires", "StaticArrays", "UUIDs"] -git-tree-sha1 = "fb14a863240d62fbf5922bf9f8803d7df6c62dc8" +git-tree-sha1 = "f2e76d3ced51a2a9e185abc0b97494c7273f649f" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.40" +version = "0.9.41" weakdeps = ["EnzymeCore", "LinearAlgebra", "SparseArrays"] [deps.KernelAbstractions.extensions] @@ -1195,9 +1196,9 @@ weakdeps = ["EnzymeCore", "LinearAlgebra", "SparseArrays"] [[deps.Krylov]] deps = ["LinearAlgebra", "Printf", "SparseArrays"] -git-tree-sha1 = "125d65fe5042faf078383312dd060adf11d90802" +git-tree-sha1 = "c4d19f51afc7ba2afbe32031b8f2d21b11c9e26e" uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" -version = "0.10.5" +version = "0.10.6" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1207,15 +1208,15 @@ version = "3.100.3+0" [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "aaafe88dccbd957a8d82f7d05be9b69172e0cee3" +git-tree-sha1 = "17b94ecafcfa45e8360a4fc9ca6b583b049e4e37" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "4.0.1+0" +version = "4.1.0+0" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Unicode"] -git-tree-sha1 = "69e4739502b7ab5176117e97e1664ed181c35036" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "PrecompileTools", "Preferences", "Printf", "Unicode"] +git-tree-sha1 = "85592339c4363f40863f0b61f9cba80b885070c3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "9.4.6" +version = "9.7.1" [deps.LLVM.extensions] BFloat16sExt = "BFloat16s" @@ -1225,9 +1226,9 @@ version = "9.4.6" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "8e76807afb59ebb833e9b131ebf1a8c006510f33" +git-tree-sha1 = "f1d1adfff151fd02b4062d1af82df02052dc4a0c" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.38+0" +version = "0.0.42+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1235,12 +1236,6 @@ git-tree-sha1 = "eb62a3deb62fc6d8822c0c4bef73e4412419c5d8" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" version = "18.1.8+0" -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "1c602b1127f4751facb671441ca72715cc95938a" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.3+0" - [[deps.LaTeXStrings]] git-tree-sha1 = "dda21b8cbd6a6c40d9d02a73230f9d70fed6918c" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" @@ -1264,15 +1259,10 @@ version = "0.16.10" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" tectonic_jll = "d7dd28d6-a5e6-559c-9131-7eb760cdacc5" -[[deps.LayoutPointers]] -deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "a9eaadb366f5493a5654e843864c13d8b107548c" -uuid = "10f19ff3-798f-405d-979b-55457f8fc047" -version = "0.1.17" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" +version = "1.11.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] @@ -1282,16 +1272,17 @@ version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.4.0+0" +version = "8.6.0+0" [[deps.LibGit2]] deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +version = "1.11.0" [[deps.LibGit2_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.6.4+0" +version = "1.7.2+0" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] @@ -1306,6 +1297,7 @@ version = "0.13.1+0" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" +version = "1.11.0" [[deps.Libffi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1327,9 +1319,9 @@ version = "1.18.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "97bbca976196f2a1eb9607131cb108c69ec3f8a6" +git-tree-sha1 = "cc3ad4faf30015a3e8094c9b5b7f19e85bdf2386" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] @@ -1339,56 +1331,60 @@ version = "4.7.2+0" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d0205286d9eceadc518742860bf23f703779a3d6" +git-tree-sha1 = "d620582b1f0cbe2c72dd1d5bd195a9ce73370ab1" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.LineSearch]] deps = ["ADTypes", "CommonSolve", "ConcreteStructs", "FastClosures", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "SciMLBase", "SciMLJacobianOperators", "StaticArraysCore"] -git-tree-sha1 = "9f7253c0574b4b585c8909232adb890930da980a" +git-tree-sha1 = "fd58a77c92e7c8f1db25c9839127d52943a49349" uuid = "87fe0de2-c867-4266-b59a-2f0a94fc965b" -version = "0.1.6" -weakdeps = ["LineSearches"] +version = "0.1.9" [deps.LineSearch.extensions] LineSearchLineSearchesExt = "LineSearches" -[[deps.LineSearches]] -deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Printf"] -git-tree-sha1 = "738bdcacfef25b3a9e4a39c28613717a6b23751e" -uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.6.0" + [deps.LineSearch.weakdeps] + LineSearches = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +version = "1.11.0" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "f9e19cacc616da676db6fbb74827d3979ad6c0ae" +deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] +git-tree-sha1 = "42b5cb44317e89ef75dd841c9c8eba9045bf9ff0" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "3.59.1" +version = "3.75.0" [deps.LinearSolve.extensions] LinearSolveAMDGPUExt = "AMDGPU" + LinearSolveAlgebraicMultigridExt = "AlgebraicMultigrid" LinearSolveBLISExt = ["blis_jll", "LAPACK_jll"] LinearSolveBandedMatricesExt = "BandedMatrices" LinearSolveBlockDiagonalsExt = "BlockDiagonals" LinearSolveCUDAExt = "CUDA" LinearSolveCUDSSExt = "CUDSS" LinearSolveCUSOLVERRFExt = ["CUSOLVERRF", "SparseArrays"] + LinearSolveChainRulesCoreExt = "ChainRulesCore" LinearSolveCliqueTreesExt = ["CliqueTrees", "SparseArrays"] + LinearSolveElementalExt = "Elemental" LinearSolveEnzymeExt = ["EnzymeCore", "SparseArrays"] LinearSolveFastAlmostBandedMatricesExt = "FastAlmostBandedMatrices" LinearSolveFastLapackInterfaceExt = "FastLapackInterface" LinearSolveForwardDiffExt = "ForwardDiff" + LinearSolveGinkgoExt = ["Ginkgo", "SparseArrays"] LinearSolveHYPREExt = "HYPRE" LinearSolveIterativeSolversExt = "IterativeSolvers" LinearSolveKernelAbstractionsExt = "KernelAbstractions" LinearSolveKrylovKitExt = "KrylovKit" LinearSolveMetalExt = "Metal" LinearSolveMooncakeExt = "Mooncake" + LinearSolvePETScCSRExt = ["PETSc", "SparseArrays", "SparseMatricesCSR"] LinearSolvePETScExt = ["PETSc", "SparseArrays"] + LinearSolvePETScMPIExt = ["PETSc", "PartitionedArrays", "SparseArrays", "SparseMatricesCSR"] + LinearSolveParUExt = ["ParU_jll", "SparseArrays"] LinearSolvePardisoExt = ["Pardiso", "SparseArrays"] LinearSolveRecursiveFactorizationExt = "RecursiveFactorization" LinearSolveSparseArraysExt = "SparseArrays" @@ -1396,16 +1392,20 @@ version = "3.59.1" [deps.LinearSolve.weakdeps] AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + AlgebraicMultigrid = "2169fc97-5a83-5252-b627-83903c6c433c" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" CUSOLVERRF = "a8cc9031-bad2-4722-94f5-40deabb4245c" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" + Elemental = "902c3f28-d1ec-5e7e-8399-a24c3845ee38" EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" FastLapackInterface = "29a986be-02c6-4525-aec4-84b980013641" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Ginkgo = "4c8bd3c9-ead9-4b5e-a625-08f1338ba0ec" HYPRE = "b5ffcf37-a2bd-41ab-a3da-4bd9bc8ad771" IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" @@ -1414,9 +1414,12 @@ version = "3.59.1" Metal = "dde4c033-4e86-420c-a63e-0dd931031962" Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" PETSc = "ace2c81b-2b5f-4b1e-a30d-d662738edfe0" + ParU_jll = "9e0b026c-e8ce-559c-a2c4-6a3d5c955bc9" Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" + PartitionedArrays = "5a9dfac6-5c52-46f7-8278-5e2210713be9" RecursiveFactorization = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseMatricesCSR = "a0a7dd2c-ebf4-11e9-1f05-cf50bc540ca1" Sparspak = "e56a9233-b9d6-4f03-8d0f-1825330902ac" blis_jll = "6136c539-28a5-5bf0-87cc-b183200dce32" @@ -1438,6 +1441,7 @@ version = "0.3.29" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" +version = "1.11.0" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] @@ -1456,14 +1460,10 @@ git-tree-sha1 = "1e0228a030642014fe5cfe68c2c0a818f9e3f522" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" version = "0.5.16" -[[deps.ManualMemory]] -git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" -uuid = "d125e4d3-2237-4719-b19c-fa641b8a4667" -version = "0.1.8" - [[deps.Markdown]] deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +version = "1.11.0" [[deps.MaybeInplace]] deps = ["ArrayInterface", "LinearAlgebra", "MacroTools"] @@ -1484,7 +1484,7 @@ version = "1.1.10" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+1" +version = "2.28.6+0" [[deps.Measures]] git-tree-sha1 = "b513cedd20d9c914783d8ad83d08120702bf2c77" @@ -1504,24 +1504,31 @@ version = "2.1.0" [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" +version = "1.11.0" [[deps.ModelingToolkit]] -deps = ["ADTypes", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "DataStructures", "DiffEqBase", "DifferentiationInterface", "DocStringExtensions", "FillArrays", "FindFirstFunctions", "ForwardDiff", "Graphs", "InteractiveUtils", "Libdl", "LinearAlgebra", "ModelingToolkitBase", "ModelingToolkitTearing", "Moshi", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "StateSelection", "StaticArrays", "SymbolicCompilerPasses", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] -git-tree-sha1 = "6db5096b32606902884cbaba7f91f4990a8a51e0" +deps = ["ADTypes", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "ConstructionBase", "DataStructures", "DiffEqBase", "DifferentiationInterface", "DocStringExtensions", "FillArrays", "ForwardDiff", "Graphs", "InteractiveUtils", "Libdl", "LinearAlgebra", "ModelingToolkitBase", "ModelingToolkitTearing", "Moshi", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "StateSelection", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] +git-tree-sha1 = "8527fee82ed8dc6934827b447b0555674c3ba1be" uuid = "961ee093-0014-501f-94e3-6117800e7a78" -version = "11.11.1" +version = "11.24.1" [deps.ModelingToolkit.extensions] MTKFMIExt = "FMIImport" + MTKOrdinaryDiffEqBDFExt = "OrdinaryDiffEqBDF" + MTKOrdinaryDiffEqDefaultExt = "OrdinaryDiffEqDefault" + MTKOrdinaryDiffEqRosenbrockExt = "OrdinaryDiffEqRosenbrock" [deps.ModelingToolkit.weakdeps] FMIImport = "9fcbc62e-52a0-44e9-a616-1359a0008194" + OrdinaryDiffEqBDF = "6ad6398a-0878-4a85-9266-38940aa047c8" + OrdinaryDiffEqDefault = "50262376-6c5a-4cf5-baba-aaf4f84d72d7" + OrdinaryDiffEqRosenbrock = "43230ef6-c299-4910-a778-202eb28ce4ce" [[deps.ModelingToolkitBase]] -deps = ["ADTypes", "AbstractTrees", "ArrayInterface", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffRules", "DifferentiationInterface", "DocStringExtensions", "DomainSets", "EnumX", "ExprTools", "FillArrays", "FindFirstFunctions", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "ImplicitDiscreteSolve", "InteractiveUtils", "JumpProcesses", "Libdl", "LinearAlgebra", "Moshi", "NaNMath", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Random", "ReadOnlyDicts", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "SciMLPublic", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] -git-tree-sha1 = "0b71d8ff34b871ad93d0f96e338761e96e41cd82" +deps = ["ADTypes", "AbstractTrees", "ArrayInterface", "BandedMatrices", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffRules", "DifferentiationInterface", "DocStringExtensions", "DomainSets", "EnumX", "EnzymeCore", "ExprTools", "FillArrays", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "ImplicitDiscreteSolve", "InteractiveUtils", "JumpProcesses", "Libdl", "LinearAlgebra", "Moshi", "NaNMath", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Random", "ReadOnlyDicts", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] +git-tree-sha1 = "d52da5508ed6c42b4e7c01356287d7114f3e13db" uuid = "7771a370-6774-4173-bd38-47e70ca0b839" -version = "1.14.0" +version = "1.33.1" [deps.ModelingToolkitBase.extensions] MTKBifurcationKitExt = "BifurcationKit" @@ -1533,6 +1540,7 @@ version = "1.14.0" MTKJuliaFormatterExt = "JuliaFormatter" MTKLabelledArraysExt = "LabelledArrays" MTKLatexifyExt = "Latexify" + MTKMooncakeExt = "Mooncake" MTKPyomoDynamicOptExt = "Pyomo" [deps.ModelingToolkitBase.weakdeps] @@ -1545,36 +1553,45 @@ version = "1.14.0" JuliaFormatter = "98e50ef6-434e-11e9-1051-2b60c6c9e899" LabelledArrays = "2ee39098-c373-598a-b85f-a56591580800" Latexify = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" Pyomo = "0e8e1daf-01b5-4eba-a626-3897743a3816" [[deps.ModelingToolkitTearing]] -deps = ["BipartiteGraphs", "CommonSolve", "DocStringExtensions", "Graphs", "LinearAlgebra", "ModelingToolkitBase", "Moshi", "OffsetArrays", "OrderedCollections", "SciMLBase", "Setfield", "SparseArrays", "StateSelection", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics"] -git-tree-sha1 = "4125939a88a40fb9225bc181a2e3798db50707ba" +deps = ["BipartiteGraphs", "CommonSolve", "DocStringExtensions", "Graphs", "LinearAlgebra", "ModelingToolkitBase", "Moshi", "OffsetArrays", "OrderedCollections", "SciMLBase", "Setfield", "SparseArrays", "StateSelection", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UUIDs"] +git-tree-sha1 = "3ad8028ba31ef212307586416f1b341b5e8d4eb9" uuid = "6bb917b9-1269-42b9-9f7c-b0dca72083ab" -version = "1.4.0" +version = "1.13.3" [[deps.Mooncake]] -deps = ["ADTypes", "ChainRules", "ChainRulesCore", "DispatchDoctor", "ExprTools", "Graphs", "LinearAlgebra", "MistyClosures", "Random", "Test"] -git-tree-sha1 = "a773740d2ad29e37da29e778d92b792c10144708" +deps = ["ADTypes", "ChainRulesCore", "DispatchDoctor", "ExprTools", "Graphs", "LinearAlgebra", "MistyClosures", "PrecompileTools", "Random", "Test"] +git-tree-sha1 = "15d436024abcf8c67a4a89347f632f93392dc13d" uuid = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" -version = "0.5.8" +version = "0.5.27" [deps.Mooncake.extensions] MooncakeAllocCheckExt = "AllocCheck" + MooncakeBFloat16sExt = "BFloat16s" MooncakeCUDAExt = "CUDA" + MooncakeChainRulesExt = "ChainRules" + MooncakeDistributionsExt = "Distributions" MooncakeDynamicExpressionsExt = "DynamicExpressions" MooncakeFluxExt = "Flux" MooncakeFunctionWrappersExt = "FunctionWrappers" MooncakeJETExt = "JET" MooncakeLogExpFunctionsExt = "LogExpFunctions" MooncakeLuxLibExt = ["LuxLib", "MLDataDevices", "Static"] + MooncakeLuxLibNNlibExt = ["LuxLib", "NNlib"] MooncakeLuxLibSLEEFPiratesExtension = ["LuxLib", "SLEEFPirates"] - MooncakeNNlibExt = ["NNlib", "GPUArraysCore"] + MooncakeNNlibExt = ["NNlib", "LinearAlgebra"] MooncakeSpecialFunctionsExt = "SpecialFunctions" + MooncakecuDNNExt = ["CUDA", "cuDNN"] [deps.Mooncake.weakdeps] AllocCheck = "9b6a8646-10ed-4001-bbdc-1d2f46dfbb1a" + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" DynamicExpressions = "a40a106e-89c9-4ca8-8020-a735e8728b6b" Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" FunctionWrappers = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" @@ -1587,6 +1604,7 @@ version = "0.5.8" SLEEFPirates = "476501e8-09a2-5ece-8869-fb82de89a1fa" SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b" Static = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" [[deps.Moshi]] deps = ["ExproniconLite", "Jieko"] @@ -1596,7 +1614,7 @@ version = "0.3.7" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2023.1.10" +version = "2023.12.12" [[deps.MuladdMacro]] git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" @@ -1604,10 +1622,10 @@ uuid = "46d2c3a1-f734-5fdb-9937-b9b9aeba4221" version = "0.2.4" [[deps.MultivariatePolynomials]] -deps = ["DataStructures", "LinearAlgebra", "MutableArithmetics"] -git-tree-sha1 = "d38b8653b1cdfac5a7da3b819c0a8d6024f9a18c" +deps = ["DataStructures", "LinearAlgebra", "MutableArithmetics", "StarAlgebras"] +git-tree-sha1 = "4838893d9b035c2f6967c0d533350e1755b58a70" uuid = "102ac46a-7ee4-5c85-9060-abc95bfdeaa3" -version = "0.5.13" +version = "0.5.19" weakdeps = ["ChainRulesCore"] [deps.MultivariatePolynomials.extensions] @@ -1621,21 +1639,15 @@ version = "1.0.21" [[deps.MutableArithmetics]] deps = ["LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "22df8573f8e7c593ac205455ca088989d0a2c7a0" +git-tree-sha1 = "7c25249fc13a070f5ba433c50e21e22bb33c6fb0" uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" -version = "1.6.7" - -[[deps.NLSolversBase]] -deps = ["ADTypes", "DifferentiationInterface", "FiniteDiff", "LinearAlgebra"] -git-tree-sha1 = "b3f76b463c7998473062992b246045e6961a074e" -uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" -version = "8.0.0" +version = "1.7.1" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Random", "ScopedValues", "Statistics"] -git-tree-sha1 = "6dc9ffc3a9931e6b988f913b49630d0fb986d0a8" +git-tree-sha1 = "78cd28dbd5f03f99ccaba45c987107adcb61c115" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.33" +version = "0.9.34" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1668,10 +1680,10 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.NonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SciMLLogging", "SimpleNonlinearSolve", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "da41d5cd90c1118f5a8914392cf561263a1d09cb" +deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SciMLLogging", "Setfield", "SimpleNonlinearSolve", "StaticArraysCore", "SymbolicIndexingInterface"] +git-tree-sha1 = "ae0b0f875e4dfda538ab6977ec7939126ee9a1fe" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "4.15.0" +version = "4.19.0" [deps.NonlinearSolve.extensions] NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" @@ -1701,10 +1713,11 @@ version = "4.15.0" Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" [[deps.NonlinearSolveBase]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "LinearAlgebra", "LogExpFunctions", "Markdown", "MaybeInplace", "PreallocationTools", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "7208e90967acd77aa6b4d46ac65cc5ac1643794c" +deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "LogExpFunctions", "Markdown", "MaybeInplace", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] +git-tree-sha1 = "a19a5df29ef2b197499fc631fa1a59385ae15262" uuid = "be0214bd-f91f-a760-ac4e-3421ce2b2da0" -version = "2.14.0" +version = "2.25.0" +weakdeps = ["BandedMatrices", "ChainRulesCore", "Enzyme", "ForwardDiff", "LineSearch", "LinearSolve", "Mooncake", "ReverseDiff", "SparseArrays", "SparseMatrixColorings", "Tracker"] [deps.NonlinearSolveBase.extensions] NonlinearSolveBaseBandedMatricesExt = "BandedMatrices" @@ -1719,30 +1732,17 @@ version = "2.14.0" NonlinearSolveBaseSparseMatrixColoringsExt = "SparseMatrixColorings" NonlinearSolveBaseTrackerExt = "Tracker" - [deps.NonlinearSolveBase.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - LineSearch = "87fe0de2-c867-4266-b59a-2f0a94fc965b" - LinearSolve = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" - Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - [[deps.NonlinearSolveFirstOrder]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConcreteStructs", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLJacobianOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "df31d105d8e7254447256a44606f2a7e98b61aba" +git-tree-sha1 = "ce68820a4f421fb5bee7ec4dcf875aff33886bfb" uuid = "5959db7a-ea39-4486-b5fe-2dd0bf03d60d" -version = "1.11.1" +version = "2.1.1" [[deps.NonlinearSolveQuasiNewton]] deps = ["ArrayInterface", "CommonSolve", "ConcreteStructs", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLOperators", "StaticArraysCore"] -git-tree-sha1 = "ade27e8e9566b6cec63ee62f6a6650a11cf9a2eb" +git-tree-sha1 = "538432ca1aea8bf63db02929bf870501f8a7c64c" uuid = "9a2c21bd-3a47-402d-9113-8faf9a0ee114" -version = "1.12.0" +version = "1.13.1" weakdeps = ["ForwardDiff"] [deps.NonlinearSolveQuasiNewton.extensions] @@ -1750,9 +1750,9 @@ weakdeps = ["ForwardDiff"] [[deps.NonlinearSolveSpectralMethods]] deps = ["CommonSolve", "ConcreteStructs", "LineSearch", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "eafd027b5cd768f19bb5de76c0e908a9065ddd36" +git-tree-sha1 = "a3781e12becdf0ce5520bd97ec617e879bf4e9f2" uuid = "26075421-4e9a-44e1-8bd1-420ed7ad02b2" -version = "1.6.0" +version = "1.7.1" weakdeps = ["ForwardDiff"] [deps.NonlinearSolveSpectralMethods.extensions] @@ -1782,7 +1782,7 @@ version = "1.3.6+0" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.23+4" +version = "0.3.27+1" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] @@ -1791,9 +1791,9 @@ version = "0.8.5+0" [[deps.OpenSSH_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "OpenSSL_jll", "Zlib_jll"] -git-tree-sha1 = "301412a644646fdc0ad67d0a87487466b491e53d" +git-tree-sha1 = "57baa4b81a24c2910afbb6d853aa0685e4312bf7" uuid = "9bd350c2-7e96-507f-8002-3f2e150b4e1b" -version = "10.2.1+0" +version = "10.3.1+0" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "NetworkOptions", "OpenSSL_jll", "Sockets"] @@ -1803,9 +1803,9 @@ version = "1.6.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "c9cbeda6aceffc52d8a0017e71db27c7a7c0beaf" +git-tree-sha1 = "2ac022577e5eac7da040de17776d51bb770cd895" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.5.5+0" +version = "3.5.6+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -1841,28 +1841,22 @@ uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.8.1" [[deps.OrdinaryDiffEq]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "ExponentialUtilities", 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= ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "d9cedcfa2cdae8859b4510b9d01ada9852cd6d9d" uuid = "b1df2697-797e-41e3-8120-5422d3b24e4a" -version = "1.9.0" +version = "2.0.0" [[deps.OrdinaryDiffEqVerner]] -deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static", "TruncatedStacktraces"] -git-tree-sha1 = "5ca5dbbfea89e14f283ce9fe2301c528ff4ec007" +deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "fb8ae6a290beed2ef61fa2e7571d921e1100c365" uuid = "79d7bb75-1356-48c1-b8c0-6832512096c2" -version = "1.11.0" +version = "2.0.0" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -2052,21 +1931,21 @@ weakdeps = ["StatsBase"] [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "0662b083e11420952f2e62e17eddae7fc07d5997" +git-tree-sha1 = "58e5ed5e386e156bd93e86b305ebd21ac63d2d04" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" -version = "1.57.0+0" +version = "1.57.1+0" [[deps.ParameterizedFunctions]] deps = ["DataStructures", "DiffEqBase", "DocStringExtensions", "Latexify", "LinearAlgebra", "ModelingToolkit", "ModelingToolkitBase", "Reexport", "SciMLBase", "SymbolicUtils", "Symbolics"] -git-tree-sha1 = "a09136faf71469ce2545949c8466ab46f3878cb7" +git-tree-sha1 = "42fd879e2e662070397bd067a94ce9c98f8353f0" uuid = "65888b18-ceab-5e60-b2b9-181511a3b968" -version = "5.22.0" +version = "5.24.0" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "7d2f8f21da5db6a806faf7b9b292296da42b2810" +git-tree-sha1 = "5d5e0a78e971354b1c7bff0655d11fdc1b0e12c8" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.3" +version = "2.8.4" [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] @@ -2075,9 +1954,13 @@ uuid = "30392449-352a-5448-841d-b1acce4e97dc" version = "0.44.2+0" [[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.10.0" +version = "1.11.0" +weakdeps = ["REPL"] + + [deps.Pkg.extensions] + REPLExt = "REPL" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -2117,18 +2000,6 @@ git-tree-sha1 = "67afbcbe9e184d6729a92a022147ed4cf972ca7b" uuid = "e409e4f3-bfea-5376-8464-e040bb5c01ab" version = "0.4.7" -[[deps.Polyester]] -deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "16bbc30b5ebea91e9ce1671adc03de2832cff552" -uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.19" - -[[deps.PolyesterWeave]] -deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] -git-tree-sha1 = "645bed98cd47f72f67316fd42fc47dee771aefcd" -uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad" -version = "0.2.2" - [[deps.PooledArrays]] deps = ["DataAPI", "Future"] git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" @@ -2137,9 +2008,9 @@ version = "1.4.3" [[deps.PreallocationTools]] deps = ["Adapt", "ArrayInterface", "PrecompileTools"] -git-tree-sha1 = "dc8d6bde5005a0eac05ae8faf1eceaaca166cfa4" +git-tree-sha1 = "e16b73bf892c55d16d53c9c0dbd0fb31cb7e25da" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "1.1.2" +version = "1.2.0" [deps.PreallocationTools.extensions] PreallocationToolsForwardDiffExt = "ForwardDiff" @@ -2165,9 +2036,9 @@ version = "1.5.2" [[deps.PrettyTables]] deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "REPL", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "211530a7dc76ab59087f4d4d1fc3f086fbe87594" +git-tree-sha1 = "624de6279ab7d94fc9f672f0068107eb6619732c" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "3.2.3" +version = "3.3.2" [deps.PrettyTables.extensions] PrettyTablesTypstryExt = "Typstry" @@ -2184,10 +2055,11 @@ version = "0.5.7" [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" +version = "1.11.0" [[deps.Profile]] -deps = ["Printf"] uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79" +version = "1.11.0" [[deps.ProgressMeter]] deps = ["Distributed", "Printf"] @@ -2202,45 +2074,53 @@ version = "1.4.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "34f7e5d2861083ec7596af8b8c092531facf2192" +git-tree-sha1 = "d7a4bff94f42208ce3cf6bc8e4e7d1d663e7ee8b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.8.2+2" +version = "6.10.2+1" [[deps.Qt6Declarative_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll", "Qt6ShaderTools_jll"] -git-tree-sha1 = "da7adf145cce0d44e892626e647f9dcbe9cb3e10" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll", "Qt6ShaderTools_jll", "Qt6Svg_jll"] +git-tree-sha1 = "d5b7dd0e226774cbd87e2790e34def09245c7eab" uuid = "629bc702-f1f5-5709-abd5-49b8460ea067" -version = "6.8.2+1" +version = "6.10.2+1" [[deps.Qt6ShaderTools_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll"] -git-tree-sha1 = "9eca9fc3fe515d619ce004c83c31ffd3f85c7ccf" +git-tree-sha1 = "4d85eedf69d875982c46643f6b4f66919d7e157b" uuid = "ce943373-25bb-56aa-8eca-768745ed7b5a" -version = "6.8.2+1" +version = "6.10.2+1" + +[[deps.Qt6Svg_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll"] +git-tree-sha1 = "81587ff5ff25a4e1115ce191e36285ede0334c9d" +uuid = "6de9746b-f93d-5813-b365-ba18ad4a9cf3" +version = "6.10.2+0" [[deps.Qt6Wayland_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll", "Qt6Declarative_jll"] -git-tree-sha1 = "8f528b0851b5b7025032818eb5abbeb8a736f853" +git-tree-sha1 = "672c938b4b4e3e0169a07a5f227029d4905456f2" uuid = "e99dba38-086e-5de3-a5b1-6e4c66e897c3" -version = "6.8.2+2" +version = "6.10.2+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9da16da70037ba9d701192e27befedefb91ec284" +git-tree-sha1 = "5e8e8b0ab68215d7a2b14b9921a946fee794749e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.11.2" +version = "2.11.3" weakdeps = ["Enzyme"] [deps.QuadGK.extensions] QuadGKEnzymeExt = "Enzyme" [[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" +version = "1.11.0" [[deps.Random]] deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +version = "1.11.0" [[deps.RandomNumbers]] deps = ["Random"] @@ -2279,16 +2159,19 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "LinearAlgebra", "PrecompileTools", "RecipesBase", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "18d2a6fd1ea9a8205cadb3a5704f8e51abdd748b" +git-tree-sha1 = "57b6fb3932fc8d1fc911f840d2c9de5fe3ba5008" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.48.0" +version = "4.3.0" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsCUDAExt = "CUDA" RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsFastBroadcastPolyesterExt = ["FastBroadcast", "Polyester"] RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsKernelAbstractionsExt = "KernelAbstractions" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsMooncakeExt = "Mooncake" RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] RecursiveArrayToolsStatisticsExt = "Statistics" @@ -2298,11 +2181,14 @@ version = "3.48.0" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" @@ -2354,15 +2240,15 @@ version = "0.5.1+0" [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "7257165d5477fd1025f7cb656019dcb6b0512c38" +git-tree-sha1 = "cfcdc949c4660544ab0fdeed169561cb22f835f4" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.17" +version = "0.5.18" [[deps.SCCNonlinearSolve]] deps = ["CommonSolve", "PrecompileTools", "Reexport", "SciMLBase", "SymbolicIndexingInterface"] -git-tree-sha1 = "b1fed39f2acdd4524c17b50ce6f4406be61b936d" +git-tree-sha1 = "521a298294a6fd11068df0148b4d57bb31550453" uuid = "9dfe8606-65a1-4bb3-9748-cb89d1561431" -version = "1.11.0" +version = "1.13.0" weakdeps = ["ChainRulesCore"] [deps.SCCNonlinearSolve.extensions] @@ -2372,16 +2258,11 @@ weakdeps = ["ChainRulesCore"] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" -[[deps.SIMDTypes]] -git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" -uuid = "94e857df-77ce-4151-89e5-788b33177be4" -version = "0.1.0" - [[deps.SciMLBase]] -deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Moshi", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "d370a38786ebbb9cd5ec386b76d57e50e88c823c" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "Random", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] +git-tree-sha1 = "450a8405f96d0a7c6caabed0852def06ba8c6bf1" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.144.2" +version = "3.7.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2389,7 +2270,6 @@ version = "2.144.2" SciMLBaseDistributionsExt = "Distributions" SciMLBaseEnzymeExt = "Enzyme" SciMLBaseForwardDiffExt = "ForwardDiff" - SciMLBaseMLStyleExt = "MLStyle" SciMLBaseMakieExt = "Makie" SciMLBaseMeasurementsExt = "Measurements" SciMLBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" @@ -2409,7 +2289,6 @@ version = "2.144.2" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - MLStyle = "d8e11817-5142-5d16-987a-aa16d5891078" Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" @@ -2430,9 +2309,9 @@ version = "0.1.3" [[deps.SciMLJacobianOperators]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DifferentiationInterface", "FastClosures", "LinearAlgebra", "SciMLBase", "SciMLOperators"] -git-tree-sha1 = "e96d5e96debf7f80a50d0b976a13dea556ccfd3a" +git-tree-sha1 = "7156a5b51cba1bea33a82a036939ead4131f92bc" uuid = "19f34311-ddf3-4b8b-af20-060888a46c0e" -version = "0.1.12" +version = "0.1.13" [[deps.SciMLLogging]] deps = ["Logging", "LoggingExtras", "Preferences"] @@ -2446,9 +2325,9 @@ weakdeps = ["Tracy"] [[deps.SciMLOperators]] deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra"] -git-tree-sha1 = "794c760e6aafe9f40dcd7dd30526ea33f0adc8b7" +git-tree-sha1 = "0e34162268883db01c04f988895a80d0659071bb" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "1.15.1" +version = "1.17.0" weakdeps = ["SparseArrays", "StaticArraysCore"] [deps.SciMLOperators.extensions] @@ -2461,14 +2340,18 @@ uuid = "431bcebd-1456-4ced-9d72-93c2757fff0b" version = "1.0.1" [[deps.SciMLSensitivity]] -deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ChainRulesCore", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "Distributions", "Enzyme", "FastBroadcast", "FiniteDiff", "ForwardDiff", "FunctionProperties", "FunctionWrappersWrappers", "Functors", "GPUArraysCore", "LinearAlgebra", "LinearSolve", "Markdown", "OrdinaryDiffEqCore", "PreallocationTools", "QuadGK", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "ReverseDiff", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLStructures", "StaticArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tracker", "Zygote"] -git-tree-sha1 = "39b474934ed8931a99e136c87544c0012578b3f7" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ChainRulesCore", "ConstructionBase", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "Distributions", "Enzyme", "FastBroadcast", "FiniteDiff", "ForwardDiff", "FunctionProperties", "FunctionWrappersWrappers", "Functors", "GPUArraysCore", "LinearAlgebra", "LinearSolve", "Markdown", "OrdinaryDiffEqCore", "PreallocationTools", "QuadGK", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "ReverseDiff", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLStructures", "SparseArrays", "StaticArrays", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tracker", "Zygote"] +git-tree-sha1 = "2e04250988083d6843680ae642b560004c618240" uuid = "1ed8b502-d754-442c-8d5d-10ac956f44a1" -version = "7.96.0" -weakdeps = ["Mooncake"] +version = "7.106.0" [deps.SciMLSensitivity.extensions] SciMLSensitivityMooncakeExt = "Mooncake" + SciMLSensitivityReactantExt = "Reactant" + + [deps.SciMLSensitivity.weakdeps] + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" [[deps.SciMLStructures]] deps = ["ArrayInterface", "PrecompileTools"] @@ -2478,9 +2361,9 @@ version = "1.10.0" [[deps.ScopedValues]] deps = ["HashArrayMappedTries", "Logging"] -git-tree-sha1 = "c3b2323466378a2ba15bea4b2f73b081e022f473" +git-tree-sha1 = "67a144433c4ce877ee6d1ada69a124d6b1ecf7be" uuid = "7e506255-f358-4e82-b7e4-beb19740aa63" -version = "1.5.0" +version = "1.6.2" [[deps.Scratch]] deps = ["Dates"] @@ -2496,6 +2379,7 @@ version = "1.4.9" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" +version = "1.11.0" [[deps.Setfield]] deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] @@ -2516,9 +2400,9 @@ version = "1.2.0" [[deps.SimpleNonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "744c3f0fb186ad28376199c1e72ca39d0c614b5d" +git-tree-sha1 = "d688de789b7e643326caf9a1051376dadbcd8873" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "2.11.0" +version = "2.11.1" weakdeps = ["ChainRulesCore", "ReverseDiff", "Tracker"] [deps.SimpleNonlinearSolve.extensions] @@ -2534,6 +2418,7 @@ version = "0.9.5" [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" +version = "1.11.0" [[deps.SortingAlgorithms]] deps = ["DataStructures"] @@ -2544,7 +2429,7 @@ version = "1.2.2" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -version = "1.10.0" +version = "1.11.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] @@ -2554,28 +2439,31 @@ version = "0.1.2" [[deps.SparseMatrixColorings]] deps = ["ADTypes", "DocStringExtensions", "LinearAlgebra", "PrecompileTools", "Random", "SparseArrays"] -git-tree-sha1 = "6ed48d9a3b22417c765dc273ae3e1e4de035e7c8" +git-tree-sha1 = "f63d76c7b7c329cf11badd564fd8ba877b09c3fe" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.4.23" +version = "0.4.27" [deps.SparseMatrixColorings.extensions] - SparseMatrixColoringsCUDAExt = "CUDA" + SparseMatrixColoringsCUDAExt = ["CUDA", "cuSPARSE"] SparseMatrixColoringsCliqueTreesExt = "CliqueTrees" SparseMatrixColoringsColorsExt = "Colors" + SparseMatrixColoringsGPUArraysExt = "GPUArrays" SparseMatrixColoringsJuMPExt = ["JuMP", "MathOptInterface"] [deps.SparseMatrixColorings.weakdeps] CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" + GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" JuMP = "4076af6c-e467-56ae-b986-b466b2749572" MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" + cuSPARSE = "b26da814-b3bc-49ef-b0ee-c816305aa060" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "5acc6a41b3082920f79ca3c759acbcecf18a8d78" +git-tree-sha1 = "2700b235561b0335d5bef7097a111dc513b8655e" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.7.1" +version = "2.7.2" weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] @@ -2587,11 +2475,17 @@ git-tree-sha1 = "4f96c596b8c8258cc7d3b19797854d368f243ddc" uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" version = "1.0.4" +[[deps.StarAlgebras]] +deps = ["LinearAlgebra", "MutableArithmetics", "SparseArrays"] +git-tree-sha1 = "235b1f9d287bbf34083b3d0829343a7942c0ad1c" +uuid = "0c0c59c1-dc5f-42e9-9a8b-b5dc384a6cd1" +version = "0.3.0" + [[deps.StateSelection]] deps = ["BipartiteGraphs", "DocStringExtensions", "FindFirstFunctions", "Graphs", "LinearAlgebra", "OrderedCollections", "Setfield", "SparseArrays"] -git-tree-sha1 = "2482a0ee31419c63be997d8added773d412c42d2" +git-tree-sha1 = "824641f6d414f0885200e034e3853c3c2f61ac43" uuid = "64909d44-ed92-46a8-bbd9-f047dfbdc84b" -version = "1.3.0" +version = "1.9.2" [deps.StateSelection.extensions] StateSelectionDeepDiffsExt = "DeepDiffs" @@ -2599,28 +2493,11 @@ version = "1.3.0" [deps.StateSelection.weakdeps] DeepDiffs = "ab62b9b5-e342-54a8-a765-a90f495de1a6" -[[deps.Static]] -deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools", "SciMLPublic"] -git-tree-sha1 = "49440414711eddc7227724ae6e570c7d5559a086" -uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.3.1" - -[[deps.StaticArrayInterface]] -deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "SciMLPublic", "Static"] -git-tree-sha1 = "aa1ea41b3d45ac449d10477f65e2b40e3197a0d2" -uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.9.0" -weakdeps = ["OffsetArrays", "StaticArrays"] - - [deps.StaticArrayInterface.extensions] - StaticArrayInterfaceOffsetArraysExt = "OffsetArrays" - StaticArrayInterfaceStaticArraysExt = "StaticArrays" - [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "0f529006004a8be48f1be25f3451186579392d47" +git-tree-sha1 = "246a8bb2e6667f832eea063c3a56aef96429a3db" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.17" +version = "1.9.18" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -2633,9 +2510,14 @@ uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" version = "1.4.4" [[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] +deps = ["LinearAlgebra"] +git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.10.0" +version = "1.11.1" +weakdeps = ["SparseArrays"] + + [deps.Statistics.extensions] + SparseArraysExt = ["SparseArrays"] [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -2660,12 +2542,6 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] StatsFunsChainRulesCoreExt = "ChainRulesCore" StatsFunsInverseFunctionsExt = "InverseFunctions" -[[deps.StrideArraysCore]] -deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "83151ba8065a73f53ca2ae98bc7274d817aa30f2" -uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.5.8" - [[deps.StringEncodings]] deps = ["Libiconv_jll"] git-tree-sha1 = "b765e46ba27ecf6b44faf70df40c57aa3a547dcb" @@ -2680,9 +2556,9 @@ version = "0.4.4" [[deps.StructArrays]] deps = ["ConstructionBase", "DataAPI", "Tables"] -git-tree-sha1 = "a2c37d815bf00575332b7bd0389f771cb7987214" +git-tree-sha1 = "ad8002667372439f2e3611cfd14097e03fa4bccd" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.7.2" +version = "0.7.3" weakdeps = ["Adapt", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "SparseArrays", "StaticArrays"] [deps.StructArrays.extensions] @@ -2697,6 +2573,10 @@ git-tree-sha1 = "c581be48ae1cbf83e899b14c07a807e1787512cc" uuid = "53d494c1-5632-5724-8f4c-31dff12d585f" version = "0.3.1" +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" + [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" @@ -2704,17 +2584,7 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "7.2.1+1" - -[[deps.SymbolicCompilerPasses]] -deps = ["LinearAlgebra", "PreallocationTools", "StaticArrays", "SymbolicUtils"] -git-tree-sha1 = "b0d41c9e1ab4f81a6e5800bb7d2534330071d520" -uuid = "3384d301-0fbe-4b40-9ae0-b0e68bedb069" -version = "0.1.2" -weakdeps = ["LinearSolve"] - - [deps.SymbolicCompilerPasses.extensions] - SCPLinearSolveExt = ["LinearSolve"] +version = "7.7.0+0" [[deps.SymbolicIndexingInterface]] deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] @@ -2733,10 +2603,10 @@ uuid = "19f23fe9-fdab-4a78-91af-e7b7767979c3" version = "1.1.0" [[deps.SymbolicUtils]] -deps = ["AbstractTrees", "ArrayInterface", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "EnumX", "ExproniconLite", "LinearAlgebra", "MacroTools", "Moshi", "MultivariatePolynomials", "MutableArithmetics", "NaNMath", "PrecompileTools", "ReadOnlyArrays", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "TaskLocalValues", "TermInterface", "WeakCacheSets"] -git-tree-sha1 = "d1c1a41cd8b7ed85559a87ac09b9b0925818aaaa" +deps = ["AbstractTrees", "ArrayInterface", "Combinatorics", "ConstructionBase", "DataStructures", "Dictionaries", "DocStringExtensions", "DynamicPolynomials", "EnumX", "ExproniconLite", "Graphs", "LinearAlgebra", "MacroTools", "Moshi", "MultivariatePolynomials", "MutableArithmetics", "NaNMath", "PrecompileTools", "ReadOnlyArrays", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "TaskLocalValues", "TermInterface", "WeakCacheSets"] +git-tree-sha1 = "ae8741c34009171ee8e46d5c209cf0a15c469928" uuid = "d1185830-fcd6-423d-90d6-eec64667417b" -version = "4.18.5" +version = "4.26.0" [deps.SymbolicUtils.extensions] SymbolicUtilsChainRulesCoreExt = "ChainRulesCore" @@ -2752,9 +2622,9 @@ version = "4.18.5" [[deps.Symbolics]] deps = ["ADTypes", "AbstractPlutoDingetjes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "Moshi", "MultivariatePolynomials", "MutableArithmetics", "NaNMath", "PrecompileTools", "Preferences", "Primes", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLPublic", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] -git-tree-sha1 = "02687bc18b509620a6472cc90f65da9d3f885a2f" +git-tree-sha1 = "85bb4be51a7e90e531b1faa926b9497f436ca535" uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7" -version = "7.15.3" +version = "7.21.0" [deps.Symbolics.extensions] SymbolicsD3TreesExt = "D3Trees" @@ -2830,12 +2700,7 @@ version = "2.0.0" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.ThreadingUtilities]] -deps = ["ManualMemory"] -git-tree-sha1 = "d969183d3d244b6c33796b5ed01ab97328f2db85" -uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" -version = "0.5.5" +version = "1.11.0" [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] @@ -2890,6 +2755,7 @@ version = "1.6.1" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +version = "1.11.0" [[deps.UnPack]] git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" @@ -2898,6 +2764,7 @@ version = "1.0.2" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +version = "1.11.0" [[deps.UnicodeFun]] deps = ["REPL"] @@ -2921,9 +2788,9 @@ weakdeps = ["ConstructionBase", "ForwardDiff", "InverseFunctions", "LaTeXStrings PrintfExt = "Printf" [[deps.UnsafeAtomics]] -git-tree-sha1 = "b13c4edda90890e5b04ba24e20a310fbe6f249ff" +git-tree-sha1 = "0f30765c32d66d58e41f4cb5624d4fc8a82ec13b" uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.3.0" +version = "0.3.1" weakdeps = ["LLVM"] [deps.UnsafeAtomics.extensions] @@ -2964,9 +2831,9 @@ version = "0.10.12" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "9cce64c0fdd1960b597ba7ecda2950b5ed957438" +git-tree-sha1 = "b29c22e245d092b8b4e8d3c09ad7baa586d9f573" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.8.2+0" +version = "5.8.3+0" [[deps.Xorg_libICE_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -3040,6 +2907,12 @@ git-tree-sha1 = "7ed9347888fac59a618302ee38216dd0379c480d" uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" version = "0.9.12+0" +[[deps.Xorg_libpciaccess_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "58972370b81423fc546c56a60ed1a009450177c3" +uuid = "a65dc6b1-eb27-53a1-bb3e-dea574b5389e" +version = "0.19.0+0" + [[deps.Xorg_libxcb_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXau_jll", "Xorg_libXdmcp_jll"] git-tree-sha1 = "bfcaf7ec088eaba362093393fe11aa141fa15422" @@ -3096,9 +2969,9 @@ version = "1.4.7+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "00af7ebdc563c9217ecc67776d1bbf037dbcebf4" +git-tree-sha1 = "429722587208f02b1cecbddcd20133df2f1ed796" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.44.0+0" +version = "2.47.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -3173,9 +3046,9 @@ version = "0.61.1+0" [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" +git-tree-sha1 = "850b06095ee71f0135d644ffd8a52850699581ed" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.13.1+0" +version = "3.13.3+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] @@ -3194,6 +3067,12 @@ git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" version = "0.2.2+0" +[[deps.libdrm_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libpciaccess_jll"] +git-tree-sha1 = "63aac0bcb0b582e11bad965cef4a689905456c03" +uuid = "8e53e030-5e6c-5a89-a30b-be5b7263a166" +version = "2.4.125+1" + [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "56d643b57b188d30cccc25e331d416d3d358e557" @@ -3214,9 +3093,9 @@ version = "1.28.1+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" +git-tree-sha1 = "e51150d5ab85cee6fc36726850f0e627ad2e4aba" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.55+0" +version = "1.6.58+0" [[deps.libsodium_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -3224,6 +3103,12 @@ git-tree-sha1 = "011b0a7331b41c25524b64dc42afc9683ee89026" uuid = "a9144af2-ca23-56d9-984f-0d03f7b5ccf8" version = "1.0.21+0" +[[deps.libva_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll", "Xorg_libXext_jll", "Xorg_libXfixes_jll", "libdrm_jll"] +git-tree-sha1 = "7dbf96baae3310fe2fa0df0ccbb3c6288d5816c9" +uuid = "9a156e7d-b971-5f62-b2c9-67348b8fb97c" +version = "2.23.0+0" + [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5" @@ -3239,7 +3124,7 @@ version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.52.0+1" +version = "1.59.0+0" [[deps.oneTBB_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] diff --git a/benchmarks/AutomaticDifferentiation/Project.toml b/benchmarks/AutomaticDifferentiation/Project.toml index 7e358e00d..32f0a7f10 100644 --- a/benchmarks/AutomaticDifferentiation/Project.toml +++ b/benchmarks/AutomaticDifferentiation/Project.toml @@ -12,6 +12,7 @@ LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" Markdown = "d6f4376e-aef5-505a-96c1-9c027394607a" Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" +OrdinaryDiffEqRosenbrock = "43230ef6-c299-4910-a778-202eb28ce4ce" ParameterizedFunctions = "65888b18-ceab-5e60-b2b9-181511a3b968" Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" PrettyTables = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" @@ -35,7 +36,8 @@ Enzyme = "0.13" FiniteDiff = "2" ForwardDiff = "1" Mooncake = "0.5" -OrdinaryDiffEq = "6" +OrdinaryDiffEq = "7" +OrdinaryDiffEqRosenbrock = "2" ParameterizedFunctions = "5" Plots = "1" PrettyTables = "3" diff --git a/benchmarks/AutomaticDifferentiation/SimpleODEAD.jmd b/benchmarks/AutomaticDifferentiation/SimpleODEAD.jmd index 320f9ebb5..f7ff95490 100644 --- a/benchmarks/AutomaticDifferentiation/SimpleODEAD.jmd +++ b/benchmarks/AutomaticDifferentiation/SimpleODEAD.jmd @@ -7,6 +7,7 @@ From the paper [A Comparison of Automatic Differentiation and Continuous Sensiti ```julia using ParameterizedFunctions, OrdinaryDiffEq, LinearAlgebra, StaticArrays +using OrdinaryDiffEqRosenbrock using SciMLSensitivity, ForwardDiff, FiniteDiff, ReverseDiff, BenchmarkTools, Test using DataFrames, PrettyTables, Markdown tols = (abstol = 1e-5, reltol = 1e-7) @@ -370,7 +371,7 @@ function diffeq_sen( f, u0, tspan, p, alg = Tsit5(); sensalg = ForwardSensitivity(), kwargs...) prob = ODEForwardSensitivityProblem(f, u0, tspan, p, sensalg) sol = solve(prob, alg; save_everystep = false, kwargs...) - extract_local_sensitivities(sol, length(sol))[2] + extract_local_sensitivities(sol, length(sol.t))[2] end function auto_sen(f, u0, tspan, p, alg = Tsit5(); kwargs...) @@ -431,9 +432,9 @@ end _adjoint_methods = ntuple(3) do ii Alg = (InterpolatingAdjoint, QuadratureAdjoint, BacksolveAdjoint)[ii] ( - user = Alg(autodiff = false, autojacvec = false), # user Jacobian - adjc = Alg(autodiff = true, autojacvec = false), # AD Jacobian - advj = Alg(autodiff = true, autojacvec = EnzymeVJP()) # AD vJ + user = Alg(autodiff = AutoFiniteDiff(), autojacvec = false), # user Jacobian + adjc = Alg(autodiff = AutoForwardDiff(), autojacvec = false), # AD Jacobian + advj = Alg(autodiff = AutoForwardDiff(), autojacvec = EnzymeVJP()) # AD vJ ) end |> NamedTuple{(:interp, :quad, :backsol)} @isdefined(ADJOINT_METHODS) || @@ -453,7 +454,7 @@ forward_lv = let t2 = @belapsed auto_sen($lvdf, $u0, $tspan, $p, $(Tsit5()); $tols...) @info " Running CSA user-Jacobian" t3 = @belapsed diffeq_sen($lvdf_with_jacobian, $u0, $tspan, $p, $(Tsit5()); - sensalg = ForwardSensitivity(autodiff = false, autojacvec = false), $tols...) + sensalg = ForwardSensitivity(autodiff = AutoFiniteDiff(), autojacvec = false), $tols...) @info " Running AD-Jacobian" t4 = @belapsed diffeq_sen($lvdf, $u0, $tspan, $p, $(Tsit5()); sensalg = ForwardSensitivity(autojacvec = false), $tols...) @@ -478,34 +479,34 @@ forward_bruss = let sol2 = @time auto_sen( bfun, b_u0, (0.0, 10.0), b_p, Rodas5(), abstol = 1e-5, reltol = 1e-7); @test sol1 ≈ sol2 atol=1e-2 - sol3 = @time diffeq_sen(bfun, b_u0, (0.0, 10.0), b_p, Rodas5(autodiff = false), + sol3 = @time diffeq_sen(bfun, b_u0, (0.0, 10.0), b_p, Rodas5(autodiff = AutoFiniteDiff()), abstol = 1e-5, reltol = 1e-7); @test sol1 ≈ hcat(sol3...) atol=1e-3 sol4 = @time diffeq_sen( ODEFunction{true, SciMLBase.FullSpecialize}(bfun, jac = brusselator_jac), b_u0, - (0.0, 10.0), b_p, Rodas5(autodiff = false), abstol = 1e-5, reltol = 1e-7, - sensalg = ForwardSensitivity(autodiff = false, autojacvec = false)); + (0.0, 10.0), b_p, Rodas5(autodiff = AutoFiniteDiff()), abstol = 1e-5, reltol = 1e-7, + sensalg = ForwardSensitivity(autodiff = AutoFiniteDiff(), autojacvec = false)); @test sol1 ≈ hcat(sol4...) atol=1e-2 - sol5 = @time solve(brusselator_comp, Rodas5(autodiff = false), abstol = 1e-5, reltol = 1e-7); + sol5 = @time solve(brusselator_comp, Rodas5(autodiff = AutoFiniteDiff()), abstol = 1e-5, reltol = 1e-7); @test sol1 ≈ reshape(sol5[end][(2n * n + 1):end], 2n*n, 4n*n) atol=1e-3 # High tolerance to benchmark @info " Running compile-time CSA" - t1 = @belapsed solve($brusselator_comp, $(Rodas5(autodiff = false)); $tols...); + t1 = @belapsed solve($brusselator_comp, $(Rodas5(autodiff = AutoFiniteDiff())); $tols...); @info " Running DSA" t2 = @belapsed auto_sen($bfun, $b_u0, $((0.0, 10.0)), $b_p, $(Rodas5()); $tols...); @info " Running CSA user-Jacobian" t3 = @belapsed diffeq_sen( $(ODEFunction{true, SciMLBase.FullSpecialize}(bfun, jac = brusselator_jac)), - $b_u0, $((0.0, 10.0)), $b_p, $(Rodas5(autodiff = false)); - sensalg = ForwardSensitivity(autodiff = false, autojacvec = false), $tols...); + $b_u0, $((0.0, 10.0)), $b_p, $(Rodas5(autodiff = AutoFiniteDiff())); + sensalg = ForwardSensitivity(autodiff = AutoFiniteDiff(), autojacvec = false), $tols...); @info " Running AD-Jacobian" t4 = @belapsed diffeq_sen( - $bfun, $b_u0, $((0.0, 10.0)), $b_p, $(Rodas5(autodiff = false)); + $bfun, $b_u0, $((0.0, 10.0)), $b_p, $(Rodas5(autodiff = AutoFiniteDiff())); sensalg = ForwardSensitivity(autojacvec = false), $tols...); @info " Running AD-Jv seeding" t5 = @belapsed diffeq_sen( - $bfun, $b_u0, $((0.0, 10.0)), $b_p, $(Rodas5(autodiff = false)); + $bfun, $b_u0, $((0.0, 10.0)), $b_p, $(Rodas5(autodiff = AutoFiniteDiff())); sensalg = ForwardSensitivity(autojacvec = true), $tols...); @info " Running numerical differentiation" t6 = @belapsed numerical_sen($bfun, $b_u0, $((0.0, 10.0)), $b_p, $(Rodas5()); $tols...); @@ -520,22 +521,22 @@ forward_pollution = let pcomp, pu0, pp, pcompu0 = make_pollution() ptspan = (0.0, 60.0) @info " Running compile-time CSA" - t1 = 0#@belapsed solve($(ODEProblem(pcomp, pcompu0, ptspan, pp)), $(Rodas5(autodiff=false)),); + t1 = 0#@belapsed solve($(ODEProblem(pcomp, pcompu0, ptspan, pp)), $(Rodas5(autodiff=AutoFiniteDiff())),); @info " Running DSA" t2 = @belapsed auto_sen($(ODEFunction{true, SciMLBase.FullSpecialize}(pollution.f)), $pu0, $ptspan, $pp, $(Rodas5()); $tols...); @info " Running CSA user-Jacobian" t3 = @belapsed diffeq_sen( $(ODEFunction{true, SciMLBase.FullSpecialize}(pollution.f, jac = pollution.jac)), - $pu0, $ptspan, $pp, $(Rodas5(autodiff = false)); - sensalg = ForwardSensitivity(autodiff = false, autojacvec = false), $tols...); + $pu0, $ptspan, $pp, $(Rodas5(autodiff = AutoFiniteDiff())); + sensalg = ForwardSensitivity(autodiff = AutoFiniteDiff(), autojacvec = false), $tols...); @info " Running AD-Jacobian" t4 = @belapsed diffeq_sen($(ODEFunction{true, SciMLBase.FullSpecialize}(pollution.f)), - $pu0, $ptspan, $pp, $(Rodas5(autodiff = false)); + $pu0, $ptspan, $pp, $(Rodas5(autodiff = AutoFiniteDiff())); sensalg = ForwardSensitivity(autojacvec = false), $tols...); @info " Running AD-Jv seeding" t5 = @belapsed diffeq_sen($(ODEFunction{true, SciMLBase.FullSpecialize}(pollution.f)), - $pu0, $ptspan, $pp, $(Rodas5(autodiff = false)); + $pu0, $ptspan, $pp, $(Rodas5(autodiff = AutoFiniteDiff())); sensalg = ForwardSensitivity(autojacvec = true), $tols...); @info " Running numerical differentiation" t6 = @belapsed numerical_sen( @@ -565,7 +566,7 @@ forward_pkpd = let t3 = @belapsed diffeq_sen( $(ODEFunction{true, SciMLBase.FullSpecialize}(pkpdf.f, jac = pkpdf.jac)), $pkpdu0, $pkpdtspan, $pkpdp, $(Tsit5()); callback = $pkpdcb, tstops = 0:24:240, - sensalg = ForwardSensitivity(autodiff = false, autojacvec = false), $tols...); + sensalg = ForwardSensitivity(autodiff = AutoFiniteDiff(), autojacvec = false), $tols...); @info " Running AD-Jacobian" t4 = @belapsed diffeq_sen($(pkpdf.f), $pkpdu0, $pkpdtspan, $pkpdp, $(Tsit5()); callback = $pkpdcb, tstops = 0:24:240, @@ -639,14 +640,14 @@ adjoint_bruss = let bfun, b_u0, b_p, brusselator_jac, brusselator_comp = makebrusselator(n) @time bsol1 = auto_sen_l2( bfun, b_u0, tspan, b_p, bt, (Rodas5()); diffalg = (ForwardDiff.gradient), tols...); - #@time bsol2 = auto_sen_l2(bfun, b_u0, tspan, b_p, bt, (Rodas5(autodiff=false)); diffalg=(ReverseDiff.gradient), tols...); + #@time bsol2 = auto_sen_l2(bfun, b_u0, tspan, b_p, bt, (Rodas5(autodiff=AutoFiniteDiff())); diffalg=(ReverseDiff.gradient), tols...); #@test maximum(abs, bsol1 .- bsol2)/maximum(abs, bsol1) < 1e-2 @time bsol3 = map(ADJOINT_METHODS) do alg @info "Running $alg" f = SciMLSensitivity.alg_autodiff(alg) ? bfun : ODEFunction{true, SciMLBase.FullSpecialize}(bfun, jac = brusselator_jac) - solver = Rodas5(autodiff = false) + solver = Rodas5(autodiff = AutoFiniteDiff()) diffeq_sen_l2( f, b_u0, tspan, b_p, bt, solver, reltol = 1e-7; sensalg = alg, tols...) end @@ -659,13 +660,13 @@ adjoint_bruss = let @test maximum(abs, bsol1 .- bsol4)/maximum(abs, bsol1) < 2e-2 t1 = @belapsed auto_sen_l2($bfun, $b_u0, $tspan, $b_p, $bt, $(Rodas5()); diffalg = $(ForwardDiff.gradient), $tols...); - #t2 = @belapsed auto_sen_l2($bfun, $b_u0, $tspan, $b_p, $bt, $(Rodas5(autodiff=false)); diffalg=$(ReverseDiff.gradient), $tols...); + #t2 = @belapsed auto_sen_l2($bfun, $b_u0, $tspan, $b_p, $bt, $(Rodas5(autodiff=AutoFiniteDiff())); diffalg=$(ReverseDiff.gradient), $tols...); t2 = NaN t3 = map(ADJOINT_METHODS[1:(2end ÷ 3)]) do alg @info "Running $alg" f = SciMLSensitivity.alg_autodiff(alg) ? bfun : ODEFunction{true, SciMLBase.FullSpecialize}(bfun, jac = brusselator_jac) - solver = Rodas5(autodiff = false) + solver = Rodas5(autodiff = AutoFiniteDiff()) @elapsed diffeq_sen_l2(f, b_u0, tspan, b_p, bt, solver; sensalg = alg, tols...); end t3 = [t3; fill(NaN, length(ADJOINT_METHODS)÷3)] @@ -682,19 +683,19 @@ adjoint_pollution = let pts = 0:0.5:60 @time psol1 = auto_sen_l2( (ODEFunction{true, SciMLBase.FullSpecialize}(pollution.f)), pu0, ptspan, pp, - pts, (Rodas5(autodiff = false)); diffalg = (ForwardDiff.gradient), tols...); - #@time psol2 = auto_sen_l2((ODEFunction{true, SciMLBase.FullSpecialize}(pollution.f)), pu0, ptspan, pp, pts, (Rodas5(autodiff=false)); diffalg=(ReverseDiff.gradient), tols...); + pts, (Rodas5(autodiff = AutoFiniteDiff())); diffalg = (ForwardDiff.gradient), tols...); + #@time psol2 = auto_sen_l2((ODEFunction{true, SciMLBase.FullSpecialize}(pollution.f)), pu0, ptspan, pp, pts, (Rodas5(autodiff=AutoFiniteDiff())); diffalg=(ReverseDiff.gradient), tols...); #@test maximum(abs, psol1 .- psol2)/maximum(abs, psol1) < 1e-2 @time psol3 = map(ADJOINT_METHODS) do alg @info "Running $alg" f = SciMLSensitivity.alg_autodiff(alg) ? pollution.f : ODEFunction{true, SciMLBase.FullSpecialize}(pollution.f, jac = pollution.jac) - solver = Rodas5(autodiff = false) + solver = Rodas5(autodiff = AutoFiniteDiff()) diffeq_sen_l2(f, pu0, ptspan, pp, pts, solver; sensalg = alg, tols...); end @time psol4 = numerical_sen_l2( (ODEFunction{true, SciMLBase.FullSpecialize}(pollution.f)), - pu0, ptspan, pp, pts, (Rodas5(autodiff = false)); tols...); + pu0, ptspan, pp, pts, (Rodas5(autodiff = AutoFiniteDiff())); tols...); # NOTE: backsolve gives unstable results!!! @test all(i->maximum(abs, psol1 .- psol3[i]')/maximum(abs, psol1) < 1e-2, eachindex(ADJOINT_METHODS)[1:(2end ÷ 3)]) @@ -703,20 +704,20 @@ adjoint_pollution = let @test maximum(abs, psol1 .- psol4)/maximum(abs, psol1) < 1e-2 t1 = @belapsed auto_sen_l2( $(ODEFunction{true, SciMLBase.FullSpecialize}(pollution.f)), $pu0, $ptspan, $pp, - $pts, $(Rodas5(autodiff = false)); diffalg = $(ForwardDiff.gradient), $tols...); - #t2 = @belapsed auto_sen_l2($(ODEFunction{true, SciMLBase.FullSpecialize}(pollution.f)), $pu0, $ptspan, $pp, $pts, $(Rodas5(autodiff=false)); diffalg=$(ReverseDiff.gradient), $tols...); + $pts, $(Rodas5(autodiff = AutoFiniteDiff())); diffalg = $(ForwardDiff.gradient), $tols...); + #t2 = @belapsed auto_sen_l2($(ODEFunction{true, SciMLBase.FullSpecialize}(pollution.f)), $pu0, $ptspan, $pp, $pts, $(Rodas5(autodiff=AutoFiniteDiff())); diffalg=$(ReverseDiff.gradient), $tols...); t2 = NaN t3 = map(ADJOINT_METHODS[1:(2end ÷ 3)]) do alg @info "Running $alg" f = SciMLSensitivity.alg_autodiff(alg) ? pollution.f : ODEFunction{true, SciMLBase.FullSpecialize}(pollution.f, jac = pollution.jac) - solver = Rodas5(autodiff = false) + solver = Rodas5(autodiff = AutoFiniteDiff()) @elapsed diffeq_sen_l2(f, pu0, ptspan, pp, pts, solver; sensalg = alg, tols...); end t3 = [t3; fill(NaN, length(ADJOINT_METHODS)÷3)] t4 = @belapsed numerical_sen_l2( $(ODEFunction{true, SciMLBase.FullSpecialize}(pollution.f)), - $pu0, $ptspan, $pp, $pts, $(Rodas5(autodiff = false)); $tols...); + $pu0, $ptspan, $pp, $pts, $(Rodas5(autodiff = AutoFiniteDiff())); $tols...); [t1; t2; t3; t4] end ``` diff --git a/benchmarks/AutomaticDifferentiationSparse/Manifest.toml b/benchmarks/AutomaticDifferentiationSparse/Manifest.toml index 6714d6154..733d7e4b9 100644 --- a/benchmarks/AutomaticDifferentiationSparse/Manifest.toml +++ b/benchmarks/AutomaticDifferentiationSparse/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.10" +julia_version = "1.11.9" manifest_format = "2.0" project_hash = "187c55e1102b63dba7033f3e0efa13faf6fce2e8" [[deps.ADTypes]] -git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" +git-tree-sha1 = "bbc22a9a08a0ef6460041086d8a7b27940ed4ffd" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.21.0" +version = "1.22.0" weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] [deps.ADTypes.extensions] @@ -39,9 +39,9 @@ version = "0.4.5" [[deps.Accessors]] deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] -git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +git-tree-sha1 = "2eeb2c9bef11013efc6f8f97f32ee59b146b09fb" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.43" +version = "0.1.44" [deps.Accessors.extensions] AxisKeysExt = "AxisKeys" @@ -63,9 +63,9 @@ version = "0.1.43" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" +git-tree-sha1 = "0761717147821d696c9470a7a86364b2fbd22fd8" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.4.0" +version = "4.5.2" weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] @@ -86,7 +86,7 @@ version = "0.2.3" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.ArnoldiMethod]] deps = ["LinearAlgebra", "Random", "StaticArrays"] @@ -96,11 +96,12 @@ version = "0.4.0" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" +git-tree-sha1 = "54f895554d05c83e3dd59f6a396671dae8999573" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.22.0" +version = "7.24.0" [deps.ArrayInterface.extensions] + ArrayInterfaceAMDGPUExt = "AMDGPU" ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" @@ -115,6 +116,7 @@ version = "7.22.0" ArrayInterfaceTrackerExt = "Tracker" [deps.ArrayInterface.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" @@ -130,15 +132,17 @@ version = "7.22.0" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +version = "1.11.0" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.BenchmarkTools]] -deps = ["Compat", "JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"] -git-tree-sha1 = "7fecfb1123b8d0232218e2da0c213004ff15358d" +deps = ["Compat", "JSON", "Logging", "PrecompileTools", "Printf", "Profile", "Statistics", "UUIDs"] +git-tree-sha1 = "9670d3febc2b6da60a0ae57846ba74670290653f" uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" -version = "1.6.3" +version = "1.8.0" [[deps.Bijections]] git-tree-sha1 = "a2d308fcd4c2fb90e943cf9cd2fbfa9c32b69733" @@ -162,10 +166,10 @@ uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" version = "0.5.0" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d0efe2c6fdcdaa1c161d206aa8b933788397ec71" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.5+1" +version = "1.18.6+0" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] @@ -175,9 +179,9 @@ version = "1.73.0" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" +git-tree-sha1 = "12177ad6b3cad7fd50c8b3825ce24a99ad61c18f" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.26.0" +version = "1.26.1" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] @@ -210,13 +214,11 @@ deps = ["FixedPointNumbers", "Random"] git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" version = "0.12.1" +weakdeps = ["StyledStrings"] [deps.ColorTypes.extensions] StyledStringsExt = "StyledStrings" - [deps.ColorTypes.weakdeps] - StyledStrings = "f489334b-da3d-4c2e-b8f0-e476e12c162b" - [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" @@ -312,15 +314,15 @@ version = "1.16.0" [[deps.DataFrames]] deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "d8928e9169ff76c6281f39a659f9bca3a573f24c" +git-tree-sha1 = "5fab31e2e01e70ad66e3e24c968c264d1cf166d6" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.8.1" +version = "1.8.2" [[deps.DataStructures]] deps = ["OrderedCollections"] -git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" +git-tree-sha1 = "e86f4a2805f7f19bec5129bc9150c38208e5dc23" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.19.3" +version = "0.19.4" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -330,6 +332,7 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" [[deps.Dbus_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] @@ -343,6 +346,12 @@ git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" version = "1.9.1" +[[deps.Dictionaries]] +deps = ["Indexing", "Random", "Serialization"] +git-tree-sha1 = "a55766a9c8f66cf19ffcdbdb1444e249bb4ace33" +uuid = "85a47980-9c8c-11e8-2b9f-f7ca1fa99fb4" +version = "0.4.6" + [[deps.DiffResults]] deps = ["StaticArraysCore"] git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" @@ -357,9 +366,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +git-tree-sha1 = "d0250552e42bf7cc36479fd38a6e30004c9e8c2b" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.7.16" +version = "0.7.17" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -369,7 +378,7 @@ version = "0.7.16" DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] - DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGPUArraysCoreExt = ["GPUArraysCore", "Adapt"] DifferentiationInterfaceGTPSAExt = "GTPSA" DifferentiationInterfaceMooncakeExt = "Mooncake" DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] @@ -383,6 +392,7 @@ version = "0.7.16" DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] [deps.DifferentiationInterface.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" @@ -441,6 +451,7 @@ weakdeps = ["ChainRulesCore", "EnzymeCore"] [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.DocStringExtensions]] git-tree-sha1 = "7442a5dfe1ebb773c29cc2962a8980f47221d76c" @@ -448,10 +459,10 @@ uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" version = "0.9.5" [[deps.DomainSets]] -deps = ["CompositeTypes", "IntervalSets", "LinearAlgebra", "StaticArrays"] -git-tree-sha1 = "c249d86e97a7e8398ce2068dce4c078a1c3464de" +deps = ["CompositeTypes", "FunctionMaps", "IntervalSets", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "1af39efbaf76fb648432b5efaac0d73af6760407" uuid = "5b8099bc-c8ec-5219-889f-1d9e522a28bf" -version = "0.7.16" +version = "0.8.0" [deps.DomainSets.extensions] DomainSetsMakieExt = "Makie" @@ -467,10 +478,10 @@ uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.6.0" [[deps.DynamicPolynomials]] -deps = ["Future", "LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Reexport", "Test"] -git-tree-sha1 = "3f50fa86c968fc1a9e006c07b6bc40ccbb1b704d" +deps = ["LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Reexport", "StarAlgebras", "Test"] +git-tree-sha1 = "5bfabc3827dfdd164359bad6800c115a81280c00" uuid = "7c1d4256-1411-5781-91ec-d7bc3513ac07" -version = "0.6.4" +version = "0.6.6" [[deps.EnumX]] git-tree-sha1 = "c49898e8438c828577f04b92fc9368c388ac783c" @@ -479,9 +490,9 @@ version = "1.0.7" [[deps.Enzyme]] deps = ["CEnum", "EnzymeCore", "Enzyme_jll", "GPUCompiler", "InteractiveUtils", "LLVM", "Libdl", "LinearAlgebra", "ObjectFile", "PrecompileTools", "Preferences", "Printf", "Random", "SparseArrays"] -git-tree-sha1 = "ea65d3121f09b5f31102542db9445163b7c99182" +git-tree-sha1 = "78704dd8d84c93a7f2ac5af0bbb95d26763ec9b9" uuid = "7da242da-08ed-463a-9acd-ee780be4f1d9" -version = "0.13.129" +version = "0.13.140" [deps.Enzyme.extensions] EnzymeBFloat16sExt = "BFloat16s" @@ -501,9 +512,9 @@ version = "0.13.129" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" [[deps.EnzymeCore]] -git-tree-sha1 = "990991b8aa76d17693a98e3a915ac7aa49f08d1a" +git-tree-sha1 = "c6ee69ee502060982d12dbaaf3d8fcb4e835a0d1" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.8.18" +version = "0.8.20" weakdeps = ["Adapt", "ChainRulesCore"] [deps.EnzymeCore.extensions] @@ -512,9 +523,9 @@ weakdeps = ["Adapt", "ChainRulesCore"] [[deps.Enzyme_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "fea21cfc452db42e3878aab62a76896e76d54d12" +git-tree-sha1 = "d3ad8f5eca369ac8803ff7db660028d47debc75d" uuid = "7cc45869-7501-5eee-bdea-0790c847d4ef" -version = "0.0.249+0" +version = "0.0.258+0" [[deps.EpollShim_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -530,9 +541,9 @@ version = "0.1.11" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "27af30de8b5445644e8ffe3bcb0d72049c089cf1" +git-tree-sha1 = "8f05e9a2e7c2e3eb524102bb2926c5743c07fbe1" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.7.3+0" +version = "2.8.0+0" [[deps.ExprTools]] git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" @@ -551,13 +562,14 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.5" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "01ba9d15e9eae375dc1eb9589df76b3572acd3f2" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libva_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "cac41ca6b2d399adfc95e51240566f8a60a80806" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "8.0.1+0" +version = "8.1.0+0" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" +version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] @@ -596,9 +608,9 @@ version = "1.3.7" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "eef4c86803f47dcb61e9b8790ecaa96956fdd8ae" +git-tree-sha1 = "cddeab6487248a39dae1a960fff0ac17b2a28888" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "1.3.2" +version = "1.3.3" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -606,9 +618,9 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "2c5512e11c791d1baed2049c5652441b28fc6a31" +git-tree-sha1 = "70329abc09b886fd2c5d94ad2d9527639c421e3e" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.4+0" +version = "2.14.3+1" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -616,15 +628,22 @@ git-tree-sha1 = "7a214fdac5ed5f59a22c2d9a885a16da1c74bbc7" uuid = "559328eb-81f9-559d-9380-de523a88c83c" version = "1.0.17+0" +[[deps.FunctionMaps]] +deps = ["CompositeTypes", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "31bd99a57edf98990d1c21486032963955450e8d" +uuid = "a85aefff-f8ca-4649-a888-c8e5398bc76c" +version = "0.1.2" + [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" +version = "1.11.0" [[deps.GLFW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] -git-tree-sha1 = "b7bfd56fa66616138dfe5237da4dc13bbd83c67f" +git-tree-sha1 = "9e0fb9e54594c47f278d75063980e43066e26e20" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.4.1+0" +version = "3.4.1+1" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -634,15 +653,15 @@ version = "0.2.0" [[deps.GPUCompiler]] deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "PrecompileTools", "Preferences", "Scratch", "Serialization", "TOML", "Tracy", "UUIDs"] -git-tree-sha1 = "966946d226e8b676ca6409454718accb18c34c54" +git-tree-sha1 = "fedfe5e7db7035271c3f58359007f971da1dde87" uuid = "61eb1bfa-7361-4325-ad38-22787b887f55" -version = "1.8.2" +version = "1.9.1" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Qt6Wayland_jll", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] -git-tree-sha1 = "ee0585b62671ce88e48d3409733230b401c9775c" +git-tree-sha1 = "44716a1a667cb867ee0e9ec8edc31c3e4aa5afdc" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.73.22" +version = "0.73.24" [deps.GR.extensions] IJuliaExt = "IJulia" @@ -652,9 +671,9 @@ version = "0.73.22" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "7dd7173f7129a1b6f84e0f03e0890cd1189b0659" +git-tree-sha1 = "be8a1b8065959e24fdc1b51402f39f3b6f0f6653" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.73.22+0" +version = "0.73.24+0" [[deps.GettextRuntime_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll"] @@ -682,9 +701,9 @@ version = "1.3.15+0" [[deps.Graphs]] deps = ["ArnoldiMethod", "DataStructures", "Inflate", "LinearAlgebra", "Random", "SimpleTraits", "SparseArrays", "Statistics"] -git-tree-sha1 = "031d63d09bd3e6e319df66bb466f5c3e8d147bee" +git-tree-sha1 = "7eb45fe833a5b7c51cf6d89c5a841d5967e44be3" uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" -version = "1.13.4" +version = "1.14.0" [deps.Graphs.extensions] GraphsSharedArraysExt = "SharedArrays" @@ -700,9 +719,9 @@ version = "1.0.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "PrecompileTools", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5e6fe50ae7f23d171f44e311c2960294aaa0beb5" +git-tree-sha1 = "51059d23c8bb67911a2e6fd5130229113735fc7e" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.19" +version = "1.11.0" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll"] @@ -722,6 +741,11 @@ git-tree-sha1 = "57e9ce6cf68d0abf5cb6b3b4abf9bedf05c939c0" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" version = "0.4.15" +[[deps.Indexing]] +git-tree-sha1 = "ce1566720fd6b19ff3411404d4b977acd4814f9f" +uuid = "313cdc1a-70c2-5d6a-ae34-0150d3930a38" +version = "1.1.1" + [[deps.Inflate]] git-tree-sha1 = "d1b1b796e47d94588b3757fe84fbf65a5ec4a80d" uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9" @@ -748,11 +772,12 @@ version = "0.1.3" [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" +version = "1.11.0" [[deps.IntervalSets]] -git-tree-sha1 = "d966f85b3b7a8e49d034d27a189e9a4874b4391a" +git-tree-sha1 = "79d6bd28c8d9bccc2229784f1bd637689b256377" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.13" +version = "0.7.14" weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] @@ -811,9 +836,9 @@ version = "0.2.1" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "b6893345fd6658c8e475d40155789f4860ac3b21" +git-tree-sha1 = "c0c9b76f3520863909825cbecdef58cd63de705a" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.1.4+0" +version = "3.1.5+0" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -823,15 +848,15 @@ version = "3.100.3+0" [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "aaafe88dccbd957a8d82f7d05be9b69172e0cee3" +git-tree-sha1 = "17b94ecafcfa45e8360a4fc9ca6b583b049e4e37" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "4.0.1+0" +version = "4.1.0+0" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Unicode"] -git-tree-sha1 = "69e4739502b7ab5176117e97e1664ed181c35036" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "PrecompileTools", "Preferences", "Printf", "Unicode"] +git-tree-sha1 = "85592339c4363f40863f0b61f9cba80b885070c3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "9.4.6" +version = "9.7.1" [deps.LLVM.extensions] BFloat16sExt = "BFloat16s" @@ -841,9 +866,9 @@ version = "9.4.6" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "8e76807afb59ebb833e9b131ebf1a8c006510f33" +git-tree-sha1 = "f1d1adfff151fd02b4062d1af82df02052dc4a0c" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.38+0" +version = "0.0.42+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -851,12 +876,6 @@ git-tree-sha1 = "eb62a3deb62fc6d8822c0c4bef73e4412419c5d8" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" version = "18.1.8+0" -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "1c602b1127f4751facb671441ca72715cc95938a" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.3+0" - [[deps.LaTeXStrings]] git-tree-sha1 = "dda21b8cbd6a6c40d9d02a73230f9d70fed6918c" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" @@ -883,6 +902,7 @@ version = "0.16.10" [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" +version = "1.11.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] @@ -892,16 +912,17 @@ version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.4.0+0" +version = "8.6.0+0" [[deps.LibGit2]] deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +version = "1.11.0" [[deps.LibGit2_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.6.4+0" +version = "1.7.2+0" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] @@ -916,6 +937,7 @@ version = "0.13.1+0" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" +version = "1.11.0" [[deps.Libffi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -937,9 +959,9 @@ version = "1.18.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "97bbca976196f2a1eb9607131cb108c69ec3f8a6" +git-tree-sha1 = "cc3ad4faf30015a3e8094c9b5b7f19e85bdf2386" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] @@ -949,13 +971,14 @@ version = "4.7.2+0" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d0205286d9eceadc518742860bf23f703779a3d6" +git-tree-sha1 = "d620582b1f0cbe2c72dd1d5bd195a9ce73370ab1" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +version = "1.11.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] @@ -975,6 +998,7 @@ version = "0.3.29" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" +version = "1.11.0" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] @@ -990,6 +1014,7 @@ version = "0.5.16" [[deps.Markdown]] deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +version = "1.11.0" [[deps.MbedTLS]] deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] @@ -1000,7 +1025,7 @@ version = "1.1.10" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+1" +version = "2.28.6+0" [[deps.Measures]] git-tree-sha1 = "b513cedd20d9c914783d8ad83d08120702bf2c77" @@ -1020,29 +1045,38 @@ version = "2.1.0" [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" +version = "1.11.0" [[deps.Mooncake]] -deps = ["ADTypes", "ChainRules", "ChainRulesCore", "DispatchDoctor", "ExprTools", "Graphs", "LinearAlgebra", "MistyClosures", "Random", "Test"] -git-tree-sha1 = "a773740d2ad29e37da29e778d92b792c10144708" +deps = ["ADTypes", "ChainRulesCore", "DispatchDoctor", "ExprTools", "Graphs", "LinearAlgebra", "MistyClosures", "PrecompileTools", "Random", "Test"] +git-tree-sha1 = "15d436024abcf8c67a4a89347f632f93392dc13d" uuid = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" -version = "0.5.8" +version = "0.5.27" [deps.Mooncake.extensions] MooncakeAllocCheckExt = "AllocCheck" + MooncakeBFloat16sExt = "BFloat16s" MooncakeCUDAExt = "CUDA" + MooncakeChainRulesExt = "ChainRules" + MooncakeDistributionsExt = "Distributions" MooncakeDynamicExpressionsExt = "DynamicExpressions" MooncakeFluxExt = "Flux" MooncakeFunctionWrappersExt = "FunctionWrappers" MooncakeJETExt = "JET" MooncakeLogExpFunctionsExt = "LogExpFunctions" MooncakeLuxLibExt = ["LuxLib", "MLDataDevices", "Static"] + MooncakeLuxLibNNlibExt = ["LuxLib", "NNlib"] MooncakeLuxLibSLEEFPiratesExtension = ["LuxLib", "SLEEFPirates"] - MooncakeNNlibExt = ["NNlib", "GPUArraysCore"] + MooncakeNNlibExt = ["NNlib", "LinearAlgebra"] MooncakeSpecialFunctionsExt = "SpecialFunctions" + MooncakecuDNNExt = ["CUDA", "cuDNN"] [deps.Mooncake.weakdeps] AllocCheck = "9b6a8646-10ed-4001-bbdc-1d2f46dfbb1a" + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" DynamicExpressions = "a40a106e-89c9-4ca8-8020-a735e8728b6b" Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" FunctionWrappers = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" @@ -1055,6 +1089,7 @@ version = "0.5.8" SLEEFPirates = "476501e8-09a2-5ece-8869-fb82de89a1fa" SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b" Static = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" [[deps.Moshi]] deps = ["ExproniconLite", "Jieko"] @@ -1064,13 +1099,13 @@ version = "0.3.7" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2023.1.10" +version = "2023.12.12" [[deps.MultivariatePolynomials]] -deps = ["DataStructures", "LinearAlgebra", "MutableArithmetics"] -git-tree-sha1 = "d38b8653b1cdfac5a7da3b819c0a8d6024f9a18c" +deps = ["DataStructures", "LinearAlgebra", "MutableArithmetics", "StarAlgebras"] +git-tree-sha1 = "4838893d9b035c2f6967c0d533350e1755b58a70" uuid = "102ac46a-7ee4-5c85-9060-abc95bfdeaa3" -version = "0.5.13" +version = "0.5.19" weakdeps = ["ChainRulesCore"] [deps.MultivariatePolynomials.extensions] @@ -1084,9 +1119,9 @@ version = "1.0.21" [[deps.MutableArithmetics]] deps = ["LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "22df8573f8e7c593ac205455ca088989d0a2c7a0" +git-tree-sha1 = "7c25249fc13a070f5ba433c50e21e22bb33c6fb0" uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" -version = "1.6.7" +version = "1.7.1" [[deps.NaNMath]] deps = ["OpenLibm_jll"] @@ -1113,7 +1148,7 @@ version = "1.3.6+0" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.23+4" +version = "0.3.27+1" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] @@ -1128,9 +1163,9 @@ version = "1.6.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "c9cbeda6aceffc52d8a0017e71db27c7a7c0beaf" +git-tree-sha1 = "2ac022577e5eac7da040de17776d51bb770cd895" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.5.5+0" +version = "3.5.6+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -1156,15 +1191,15 @@ version = "10.42.0+1" [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "0662b083e11420952f2e62e17eddae7fc07d5997" +git-tree-sha1 = "58e5ed5e386e156bd93e86b305ebd21ac63d2d04" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" -version = "1.57.0+0" +version = "1.57.1+0" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "7d2f8f21da5db6a806faf7b9b292296da42b2810" +git-tree-sha1 = "5d5e0a78e971354b1c7bff0655d11fdc1b0e12c8" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.3" +version = "2.8.4" [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] @@ -1173,9 +1208,13 @@ uuid = "30392449-352a-5448-841d-b1acce4e97dc" version = "0.44.2+0" [[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.10.0" +version = "1.11.0" +weakdeps = ["REPL"] + + [deps.Pkg.extensions] + REPLExt = "REPL" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1217,9 +1256,9 @@ version = "1.4.3" [[deps.PreallocationTools]] deps = ["Adapt", "ArrayInterface", "PrecompileTools"] -git-tree-sha1 = "dc8d6bde5005a0eac05ae8faf1eceaaca166cfa4" +git-tree-sha1 = "e16b73bf892c55d16d53c9c0dbd0fb31cb7e25da" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "1.1.2" +version = "1.2.0" [deps.PreallocationTools.extensions] PreallocationToolsForwardDiffExt = "ForwardDiff" @@ -1245,9 +1284,9 @@ version = "1.5.2" [[deps.PrettyTables]] deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "REPL", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "211530a7dc76ab59087f4d4d1fc3f086fbe87594" +git-tree-sha1 = "624de6279ab7d94fc9f672f0068107eb6619732c" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "3.2.3" +version = "3.3.2" [deps.PrettyTables.extensions] PrettyTablesTypstryExt = "Typstry" @@ -1264,10 +1303,11 @@ version = "0.5.7" [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" +version = "1.11.0" [[deps.Profile]] -deps = ["Printf"] uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79" +version = "1.11.0" [[deps.ProgressMeter]] deps = ["Distributed", "Printf"] @@ -1282,35 +1322,43 @@ version = "1.4.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "34f7e5d2861083ec7596af8b8c092531facf2192" +git-tree-sha1 = "d7a4bff94f42208ce3cf6bc8e4e7d1d663e7ee8b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.8.2+2" +version = "6.10.2+1" [[deps.Qt6Declarative_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll", "Qt6ShaderTools_jll"] -git-tree-sha1 = "da7adf145cce0d44e892626e647f9dcbe9cb3e10" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll", "Qt6ShaderTools_jll", "Qt6Svg_jll"] +git-tree-sha1 = "d5b7dd0e226774cbd87e2790e34def09245c7eab" uuid = "629bc702-f1f5-5709-abd5-49b8460ea067" -version = "6.8.2+1" +version = "6.10.2+1" [[deps.Qt6ShaderTools_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll"] -git-tree-sha1 = "9eca9fc3fe515d619ce004c83c31ffd3f85c7ccf" +git-tree-sha1 = "4d85eedf69d875982c46643f6b4f66919d7e157b" uuid = "ce943373-25bb-56aa-8eca-768745ed7b5a" -version = "6.8.2+1" +version = "6.10.2+1" + +[[deps.Qt6Svg_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll"] +git-tree-sha1 = "81587ff5ff25a4e1115ce191e36285ede0334c9d" +uuid = "6de9746b-f93d-5813-b365-ba18ad4a9cf3" +version = "6.10.2+0" [[deps.Qt6Wayland_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll", "Qt6Declarative_jll"] -git-tree-sha1 = "8f528b0851b5b7025032818eb5abbeb8a736f853" +git-tree-sha1 = "672c938b4b4e3e0169a07a5f227029d4905456f2" uuid = "e99dba38-086e-5de3-a5b1-6e4c66e897c3" -version = "6.8.2+2" +version = "6.10.2+1" [[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" +version = "1.11.0" [[deps.Random]] deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +version = "1.11.0" [[deps.ReadOnlyArrays]] git-tree-sha1 = "e6f7ddf48cf141cb312b078ca21cb2d29d0dc11d" @@ -1354,9 +1402,9 @@ version = "1.3.1" [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "7257165d5477fd1025f7cb656019dcb6b0512c38" +git-tree-sha1 = "cfcdc949c4660544ab0fdeed169561cb22f835f4" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.17" +version = "0.5.18" [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" @@ -1381,6 +1429,7 @@ version = "1.4.9" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" +version = "1.11.0" [[deps.Setfield]] deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] @@ -1407,6 +1456,7 @@ version = "0.9.5" [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" +version = "1.11.0" [[deps.SortingAlgorithms]] deps = ["DataStructures"] @@ -1417,7 +1467,7 @@ version = "1.2.2" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -version = "1.10.0" +version = "1.11.0" [[deps.SparseConnectivityTracer]] deps = ["ADTypes", "DocStringExtensions", "FillArrays", "LinearAlgebra", "Random", "SparseArrays"] @@ -1447,28 +1497,31 @@ version = "0.1.2" [[deps.SparseMatrixColorings]] deps = ["ADTypes", "DocStringExtensions", "LinearAlgebra", "PrecompileTools", "Random", "SparseArrays"] -git-tree-sha1 = "6ed48d9a3b22417c765dc273ae3e1e4de035e7c8" +git-tree-sha1 = "f63d76c7b7c329cf11badd564fd8ba877b09c3fe" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.4.23" +version = "0.4.27" [deps.SparseMatrixColorings.extensions] - SparseMatrixColoringsCUDAExt = "CUDA" + SparseMatrixColoringsCUDAExt = ["CUDA", "cuSPARSE"] SparseMatrixColoringsCliqueTreesExt = "CliqueTrees" SparseMatrixColoringsColorsExt = "Colors" + SparseMatrixColoringsGPUArraysExt = "GPUArrays" SparseMatrixColoringsJuMPExt = ["JuMP", "MathOptInterface"] [deps.SparseMatrixColorings.weakdeps] CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" + GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" JuMP = "4076af6c-e467-56ae-b986-b466b2749572" MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" + cuSPARSE = "b26da814-b3bc-49ef-b0ee-c816305aa060" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "5acc6a41b3082920f79ca3c759acbcecf18a8d78" +git-tree-sha1 = "2700b235561b0335d5bef7097a111dc513b8655e" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.7.1" +version = "2.7.2" weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] @@ -1480,11 +1533,17 @@ git-tree-sha1 = "4f96c596b8c8258cc7d3b19797854d368f243ddc" uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" version = "1.0.4" +[[deps.StarAlgebras]] +deps = ["LinearAlgebra", "MutableArithmetics", "SparseArrays"] +git-tree-sha1 = "235b1f9d287bbf34083b3d0829343a7942c0ad1c" +uuid = "0c0c59c1-dc5f-42e9-9a8b-b5dc384a6cd1" +version = "0.3.0" + [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "0f529006004a8be48f1be25f3451186579392d47" +git-tree-sha1 = "246a8bb2e6667f832eea063c3a56aef96429a3db" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.17" +version = "1.9.18" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -1497,9 +1556,14 @@ uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" version = "1.4.4" [[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] +deps = ["LinearAlgebra"] +git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.10.0" +version = "1.11.1" +weakdeps = ["SparseArrays"] + + [deps.Statistics.extensions] + SparseArraysExt = ["SparseArrays"] [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1527,9 +1591,9 @@ version = "0.4.4" [[deps.StructArrays]] deps = ["ConstructionBase", "DataAPI", "Tables"] -git-tree-sha1 = "a2c37d815bf00575332b7bd0389f771cb7987214" +git-tree-sha1 = "ad8002667372439f2e3611cfd14097e03fa4bccd" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.7.2" +version = "0.7.3" [deps.StructArrays.extensions] StructArraysAdaptExt = "Adapt" @@ -1551,6 +1615,10 @@ git-tree-sha1 = "c581be48ae1cbf83e899b14c07a807e1787512cc" uuid = "53d494c1-5632-5724-8f4c-31dff12d585f" version = "0.3.1" +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" + [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" @@ -1558,7 +1626,7 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "7.2.1+1" +version = "7.7.0+0" [[deps.SymbolicIndexingInterface]] deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] @@ -1577,10 +1645,10 @@ uuid = "19f23fe9-fdab-4a78-91af-e7b7767979c3" version = "1.1.0" [[deps.SymbolicUtils]] -deps = ["AbstractTrees", "ArrayInterface", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "EnumX", "ExproniconLite", "LinearAlgebra", "MacroTools", "Moshi", "MultivariatePolynomials", "MutableArithmetics", "NaNMath", "PrecompileTools", "ReadOnlyArrays", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "TaskLocalValues", "TermInterface", "WeakCacheSets"] -git-tree-sha1 = "d1c1a41cd8b7ed85559a87ac09b9b0925818aaaa" +deps = ["AbstractTrees", "ArrayInterface", "Combinatorics", "ConstructionBase", "DataStructures", "Dictionaries", "DocStringExtensions", "DynamicPolynomials", "EnumX", "ExproniconLite", "Graphs", "LinearAlgebra", "MacroTools", "Moshi", "MultivariatePolynomials", "MutableArithmetics", "NaNMath", "PrecompileTools", "ReadOnlyArrays", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "TaskLocalValues", "TermInterface", "WeakCacheSets"] +git-tree-sha1 = "ae8741c34009171ee8e46d5c209cf0a15c469928" uuid = "d1185830-fcd6-423d-90d6-eec64667417b" -version = "4.18.5" +version = "4.26.0" [deps.SymbolicUtils.extensions] SymbolicUtilsChainRulesCoreExt = "ChainRulesCore" @@ -1596,9 +1664,9 @@ version = "4.18.5" [[deps.Symbolics]] deps = ["ADTypes", "AbstractPlutoDingetjes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "Moshi", "MultivariatePolynomials", "MutableArithmetics", "NaNMath", "PrecompileTools", "Preferences", "Primes", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLPublic", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] -git-tree-sha1 = "02687bc18b509620a6472cc90f65da9d3f885a2f" +git-tree-sha1 = "85bb4be51a7e90e531b1faa926b9497f436ca535" uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7" -version = "7.15.3" +version = "7.21.0" [deps.Symbolics.extensions] SymbolicsD3TreesExt = "D3Trees" @@ -1668,6 +1736,7 @@ version = "2.0.0" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" +version = "1.11.0" [[deps.Tracy]] deps = ["ExprTools", "LibTracyClient_jll", "Libdl"] @@ -1694,9 +1763,11 @@ version = "1.6.1" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +version = "1.11.0" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +version = "1.11.0" [[deps.UnicodeFun]] deps = ["REPL"] @@ -1734,9 +1805,9 @@ version = "0.10.12" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "9cce64c0fdd1960b597ba7ecda2950b5ed957438" +git-tree-sha1 = "b29c22e245d092b8b4e8d3c09ad7baa586d9f573" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.8.2+0" +version = "5.8.3+0" [[deps.Xorg_libICE_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1810,6 +1881,12 @@ git-tree-sha1 = "7ed9347888fac59a618302ee38216dd0379c480d" uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" version = "0.9.12+0" +[[deps.Xorg_libpciaccess_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "58972370b81423fc546c56a60ed1a009450177c3" +uuid = "a65dc6b1-eb27-53a1-bb3e-dea574b5389e" +version = "0.19.0+0" + [[deps.Xorg_libxcb_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXau_jll", "Xorg_libXdmcp_jll"] git-tree-sha1 = "bfcaf7ec088eaba362093393fe11aa141fa15422" @@ -1866,9 +1943,9 @@ version = "1.4.7+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "00af7ebdc563c9217ecc67776d1bbf037dbcebf4" +git-tree-sha1 = "429722587208f02b1cecbddcd20133df2f1ed796" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.44.0+0" +version = "2.47.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1931,9 +2008,9 @@ version = "0.61.1+0" [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" +git-tree-sha1 = "850b06095ee71f0135d644ffd8a52850699581ed" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.13.1+0" +version = "3.13.3+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] @@ -1952,6 +2029,12 @@ git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" version = "0.2.2+0" +[[deps.libdrm_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libpciaccess_jll"] +git-tree-sha1 = "63aac0bcb0b582e11bad965cef4a689905456c03" +uuid = "8e53e030-5e6c-5a89-a30b-be5b7263a166" +version = "2.4.125+1" + [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "56d643b57b188d30cccc25e331d416d3d358e557" @@ -1972,9 +2055,15 @@ version = "1.28.1+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" +git-tree-sha1 = "e51150d5ab85cee6fc36726850f0e627ad2e4aba" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.55+0" +version = "1.6.58+0" + +[[deps.libva_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll", "Xorg_libXext_jll", "Xorg_libXfixes_jll", "libdrm_jll"] +git-tree-sha1 = "7dbf96baae3310fe2fa0df0ccbb3c6288d5816c9" +uuid = "9a156e7d-b971-5f62-b2c9-67348b8fb97c" +version = "2.23.0+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] @@ -1991,7 +2080,7 @@ version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.52.0+1" +version = "1.59.0+0" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] diff --git a/benchmarks/BayesianInference/Project.toml b/benchmarks/BayesianInference/Project.toml index 7fad92e1b..ef2376c3c 100644 --- a/benchmarks/BayesianInference/Project.toml +++ b/benchmarks/BayesianInference/Project.toml @@ -20,10 +20,10 @@ DiffEqBayes = "3.0.1" DiffEqCallbacks = "4" Distributions = "0.25" DynamicHMC = "3.1" -OrdinaryDiffEq = "6" +OrdinaryDiffEq = "7" ParameterizedFunctions = "5.3" Plots = "1.4" -RecursiveArrayTools = "3" +RecursiveArrayTools = "4" SciMLBenchmarks = "0.1" StanSample = "7" StaticArrays = "1" diff --git a/benchmarks/Bio/BCR.jmd b/benchmarks/Bio/BCR.jmd index eb61485bc..344ace21e 100644 --- a/benchmarks/Bio/BCR.jmd +++ b/benchmarks/Bio/BCR.jmd @@ -17,6 +17,7 @@ using DiffEqBase, OrdinaryDiffEq, Catalyst, ReactionNetworkImporters, Sundials, Plots, DiffEqDevTools, ODEInterface, ODEInterfaceDiffEq, LSODA, TimerOutputs, LinearAlgebra, ModelingToolkit, BenchmarkTools, LinearSolve, RecursiveFactorization +using OrdinaryDiffEqBDF, OrdinaryDiffEqSDIRK gr() datadir = joinpath(dirname(pathof(ReactionNetworkImporters)), "../data/bcr") @@ -197,10 +198,10 @@ plot(wp; label = names) ```julia setups = [ - Dict(:alg=>TRBDF2(autodiff = false)), - Dict(:alg=>QNDF(autodiff = false)), - Dict(:alg=>FBDF(autodiff = false)), - Dict(:alg=>KenCarp4(autodiff = false)) + Dict(:alg=>TRBDF2(autodiff = AutoFiniteDiff())), + Dict(:alg=>QNDF(autodiff = AutoFiniteDiff())), + Dict(:alg=>FBDF(autodiff = AutoFiniteDiff())), + Dict(:alg=>KenCarp4(autodiff = AutoFiniteDiff())) ]; ``` @@ -218,10 +219,10 @@ plot(wp; label = names) ```julia setups = [ - Dict(:alg=>TRBDF2(linsolve = KrylovJL_GMRES(), autodiff = false)), - Dict(:alg=>QNDF(linsolve = KrylovJL_GMRES(), autodiff = false)), - Dict(:alg=>FBDF(linsolve = KrylovJL_GMRES(), autodiff = false)), - Dict(:alg=>KenCarp4(linsolve = KrylovJL_GMRES(), autodiff = false)) + Dict(:alg=>TRBDF2(linsolve = KrylovJL_GMRES(), autodiff = AutoFiniteDiff())), + Dict(:alg=>QNDF(linsolve = KrylovJL_GMRES(), autodiff = AutoFiniteDiff())), + Dict(:alg=>FBDF(linsolve = KrylovJL_GMRES(), autodiff = AutoFiniteDiff())), + Dict(:alg=>KenCarp4(linsolve = KrylovJL_GMRES(), autodiff = AutoFiniteDiff())) ]; ``` @@ -240,11 +241,11 @@ plot(wp; label = names) ```julia setups = [ Dict(:alg=>TRBDF2( - linsolve = KrylovJL_GMRES(), autodiff = false, precs = incompletelu, concrete_jac = true)), - Dict(:alg=>QNDF(linsolve = KrylovJL_GMRES(), autodiff = false, precs = incompletelu, concrete_jac = true)), - Dict(:alg=>FBDF(linsolve = KrylovJL_GMRES(), autodiff = false, precs = incompletelu, concrete_jac = true)), + linsolve = KrylovJL_GMRES(; precs = incompletelu), autodiff = AutoFiniteDiff(), concrete_jac = true)), + Dict(:alg=>QNDF(linsolve = KrylovJL_GMRES(; precs = incompletelu), autodiff = AutoFiniteDiff(), concrete_jac = true)), + Dict(:alg=>FBDF(linsolve = KrylovJL_GMRES(; precs = incompletelu), autodiff = AutoFiniteDiff(), concrete_jac = true)), Dict(:alg=>KenCarp4( - linsolve = KrylovJL_GMRES(), autodiff = false, precs = incompletelu, concrete_jac = true)) + linsolve = KrylovJL_GMRES(; precs = incompletelu), autodiff = AutoFiniteDiff(), concrete_jac = true)) ]; ``` @@ -264,10 +265,10 @@ We designate the solvers we wish to use. ```julia setups = [ - Dict(:alg=>TRBDF2(linsolve = KLUFactorization(), autodiff = false)), - Dict(:alg=>QNDF(linsolve = KLUFactorization(), autodiff = false)), - Dict(:alg=>FBDF(linsolve = KLUFactorization(), autodiff = false)), - Dict(:alg=>KenCarp4(linsolve = KLUFactorization(), autodiff = false)) + Dict(:alg=>TRBDF2(linsolve = KLUFactorization(), autodiff = AutoFiniteDiff())), + Dict(:alg=>QNDF(linsolve = KLUFactorization(), autodiff = AutoFiniteDiff())), + Dict(:alg=>FBDF(linsolve = KLUFactorization(), autodiff = AutoFiniteDiff())), + Dict(:alg=>KenCarp4(linsolve = KLUFactorization(), autodiff = AutoFiniteDiff())) ]; ``` @@ -297,14 +298,14 @@ setups = [ :alg=>CVODE_BDF(linear_solver = :GMRES, prec = precilu, psetup = psetupilu, prec_side = 1), :prob_choice => 2), Dict( - :alg=>QNDF(linsolve = KrylovJL_GMRES(), autodiff = false, precs = incompletelu, concrete_jac = true), + :alg=>QNDF(linsolve = KrylovJL_GMRES(; precs = incompletelu), autodiff = AutoFiniteDiff(), concrete_jac = true), :prob_choice => 3), Dict( - :alg=>FBDF(linsolve = KrylovJL_GMRES(), autodiff = false, precs = incompletelu, concrete_jac = true), + :alg=>FBDF(linsolve = KrylovJL_GMRES(; precs = incompletelu), autodiff = AutoFiniteDiff(), concrete_jac = true), :prob_choice => 3), - Dict(:alg=>QNDF(linsolve = KLUFactorization(), autodiff = false), :prob_choice => 3), - Dict(:alg=>FBDF(linsolve = KLUFactorization(), autodiff = false), :prob_choice => 3), - Dict(:alg=>KenCarp4(linsolve = KLUFactorization(), autodiff = false), :prob_choice => 3) + Dict(:alg=>QNDF(linsolve = KLUFactorization(), autodiff = AutoFiniteDiff()), :prob_choice => 3), + Dict(:alg=>FBDF(linsolve = KLUFactorization(), autodiff = AutoFiniteDiff()), :prob_choice => 3), + Dict(:alg=>KenCarp4(linsolve = KLUFactorization(), autodiff = AutoFiniteDiff()), :prob_choice => 3) ]; ``` diff --git a/benchmarks/Bio/Bidkhori2012.jmd b/benchmarks/Bio/Bidkhori2012.jmd index b476760f0..00c27eea4 100644 --- a/benchmarks/Bio/Bidkhori2012.jmd +++ b/benchmarks/Bio/Bidkhori2012.jmd @@ -13,6 +13,7 @@ using DiffEqBase, OrdinaryDiffEq, Catalyst, ReactionNetworkImporters, Sundials, Plots, DiffEqDevTools, ODEInterface, ODEInterfaceDiffEq, LSODA, TimerOutputs, LinearAlgebra, ModelingToolkit, BenchmarkTools, JLD2, RecursiveFactorization +using OrdinaryDiffEqBDF, OrdinaryDiffEqExtrapolation, OrdinaryDiffEqRosenbrock, OrdinaryDiffEqSDIRK gr() @@ -1438,17 +1439,17 @@ Note that the extrapolation methods currently do not support sparse Jacobians. ```julia setups = [ #Dict(:alg=>CVODE_BDF()), #Fails! - Dict(:alg=>KenCarp4(autodiff = false)), - Dict(:alg=>Rodas4(autodiff = false)), - Dict(:alg=>QNDF(autodiff = false)) #Dict(:alg=>lsoda()), + Dict(:alg=>KenCarp4(autodiff = AutoFiniteDiff())), + Dict(:alg=>Rodas4(autodiff = AutoFiniteDiff())), + Dict(:alg=>QNDF(autodiff = AutoFiniteDiff())) #Dict(:alg=>lsoda()), #Dict(:alg=>radau()), #Dict(:alg=>seulex()), - #Dict(:alg=>ImplicitEulerExtrapolation(autodiff = false,min_order = 8, init_order = 9,threading = OrdinaryDiffEq.PolyesterThreads())), - #Dict(:alg=>ImplicitEulerExtrapolation(autodiff = false,min_order = 8, init_order = 9,threading = false)), - #Dict(:alg=>ImplicitEulerBarycentricExtrapolation(autodiff = false,min_order = 7, init_order = 8,threading = OrdinaryDiffEq.PolyesterThreads())), - #Dict(:alg=>ImplicitEulerBarycentricExtrapolation(autodiff = false,min_order = 7, init_order = 8,threading = false)), - #Dict(:alg=>ImplicitHairerWannerExtrapolation(autodiff = false,init_order = 5,threading = OrdinaryDiffEq.PolyesterThreads())), - #Dict(:alg=>ImplicitHairerWannerExtrapolation(autodiff = false,init_order = 5, threading = false)), + #Dict(:alg=>ImplicitEulerExtrapolation(autodiff = AutoFiniteDiff(),min_order = 8, init_order = 9,threading = OrdinaryDiffEq.PolyesterThreads())), + #Dict(:alg=>ImplicitEulerExtrapolation(autodiff = AutoFiniteDiff(),min_order = 8, init_order = 9,threading = false)), + #Dict(:alg=>ImplicitEulerBarycentricExtrapolation(autodiff = AutoFiniteDiff(),min_order = 7, init_order = 8,threading = OrdinaryDiffEq.PolyesterThreads())), + #Dict(:alg=>ImplicitEulerBarycentricExtrapolation(autodiff = AutoFiniteDiff(),min_order = 7, init_order = 8,threading = false)), + #Dict(:alg=>ImplicitHairerWannerExtrapolation(autodiff = AutoFiniteDiff(),init_order = 5,threading = OrdinaryDiffEq.PolyesterThreads())), + #Dict(:alg=>ImplicitHairerWannerExtrapolation(autodiff = AutoFiniteDiff(),init_order = 5, threading = false)), ] solnames = ["KenCarp4", "Rodas4", "QNDF"#"ImplEulerExtpl (threaded)", "ImplEulerExtpl (non-threaded)", #"ImplEulerBaryExtpl (threaded)","ImplEulerBaryExtpl (non-threaded)","ImplHWExtpl (threaded)","ImplHWExtpl (non-threaded)" diff --git a/benchmarks/Bio/Project.toml b/benchmarks/Bio/Project.toml index fa53b978a..79fef25c6 100644 --- a/benchmarks/Bio/Project.toml +++ b/benchmarks/Bio/Project.toml @@ -11,6 +11,13 @@ ModelingToolkit = "961ee093-0014-501f-94e3-6117800e7a78" ODEInterface = "54ca160b-1b9f-5127-a996-1867f4bc2a2c" ODEInterfaceDiffEq = "09606e27-ecf5-54fc-bb29-004bd9f985bf" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" +OrdinaryDiffEqAdamsBashforthMoulton = "89bda076-bce5-4f1c-845f-551c83cdda9a" +OrdinaryDiffEqBDF = "6ad6398a-0878-4a85-9266-38940aa047c8" +OrdinaryDiffEqExtrapolation = "becaefa8-8ca2-5cf9-886d-c06f3d2bd2c4" +OrdinaryDiffEqRosenbrock = "43230ef6-c299-4910-a778-202eb28ce4ce" +OrdinaryDiffEqSDIRK = "2d112036-d095-4a1e-ab9a-08536f3ecdbf" +OrdinaryDiffEqStabilizedRK = "358294b1-0aab-51c3-aafe-ad5ab194a2ad" +OrdinaryDiffEqVerner = "79d7bb75-1356-48c1-b8c0-6832512096c2" Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" ReactionNetworkImporters = "b4db0fb7-de2a-5028-82bf-5021f5cfa881" RecursiveFactorization = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" @@ -20,20 +27,27 @@ TimerOutputs = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" [compat] BenchmarkTools = "1.2" -Catalyst = "14" -DiffEqBase = "6.100" -DiffEqDevTools = "2.35" +Catalyst = "16" +DiffEqBase = "7" +DiffEqDevTools = "3" IncompleteLU = "0.2" JLD2 = "0.4, 0.5, 0.6" LSODA = "0.7" LinearSolve = "3" -ModelingToolkit = "9" +ModelingToolkit = "11" ODEInterface = "0.5" -ODEInterfaceDiffEq = "3.8" -OrdinaryDiffEq = "6" +ODEInterfaceDiffEq = "4" +OrdinaryDiffEq = "7" +OrdinaryDiffEqAdamsBashforthMoulton = "2" +OrdinaryDiffEqBDF = "2" +OrdinaryDiffEqExtrapolation = "2" +OrdinaryDiffEqRosenbrock = "2" +OrdinaryDiffEqSDIRK = "2" +OrdinaryDiffEqStabilizedRK = "2" +OrdinaryDiffEqVerner = "2" Plots = "1.10" ReactionNetworkImporters = "0.15" RecursiveFactorization = "0.2.23" SciMLBenchmarks = "0.1" -Sundials = "4.4, 5" +Sundials = "6" TimerOutputs = "0.5" diff --git a/benchmarks/Bio/egfr_net.jmd b/benchmarks/Bio/egfr_net.jmd index 0e99eb5de..c62c725bf 100644 --- a/benchmarks/Bio/egfr_net.jmd +++ b/benchmarks/Bio/egfr_net.jmd @@ -18,6 +18,7 @@ using DiffEqBase, OrdinaryDiffEq, Catalyst, ReactionNetworkImporters, Sundials, Plots, DiffEqDevTools, ODEInterface, ODEInterfaceDiffEq, LSODA, TimerOutputs, LinearAlgebra, ModelingToolkit, BenchmarkTools, LinearSolve, RecursiveFactorization +using OrdinaryDiffEqAdamsBashforthMoulton, OrdinaryDiffEqBDF, OrdinaryDiffEqRosenbrock, OrdinaryDiffEqSDIRK, OrdinaryDiffEqStabilizedRK, OrdinaryDiffEqVerner gr() const to = TimerOutput() diff --git a/benchmarks/Bio/fceri_gamma2.jmd b/benchmarks/Bio/fceri_gamma2.jmd index 2f82a2185..b6eb611cd 100644 --- a/benchmarks/Bio/fceri_gamma2.jmd +++ b/benchmarks/Bio/fceri_gamma2.jmd @@ -18,6 +18,7 @@ using DiffEqBase, OrdinaryDiffEq, Catalyst, ReactionNetworkImporters, Sundials, Plots, DiffEqDevTools, ODEInterface, ODEInterfaceDiffEq, LSODA, TimerOutputs, LinearAlgebra, ModelingToolkit, BenchmarkTools, LinearSolve, RecursiveFactorization +using OrdinaryDiffEqAdamsBashforthMoulton, OrdinaryDiffEqBDF, OrdinaryDiffEqSDIRK, OrdinaryDiffEqVerner gr() const to = TimerOutput() @@ -176,10 +177,10 @@ plot(wp; label = names) ```julia setups = [ - Dict(:alg=>TRBDF2(autodiff = false)), - Dict(:alg=>QNDF(autodiff = false)), - Dict(:alg=>FBDF(autodiff = false)), - Dict(:alg=>KenCarp4(autodiff = false)) + Dict(:alg=>TRBDF2(autodiff = AutoFiniteDiff())), + Dict(:alg=>QNDF(autodiff = AutoFiniteDiff())), + Dict(:alg=>FBDF(autodiff = AutoFiniteDiff())), + Dict(:alg=>KenCarp4(autodiff = AutoFiniteDiff())) ]; ``` @@ -197,10 +198,10 @@ plot(wp; label = names) ```julia setups = [ - Dict(:alg=>TRBDF2(linsolve = KrylovJL_GMRES(), autodiff = false)), - Dict(:alg=>QNDF(linsolve = KrylovJL_GMRES(), autodiff = false)), - Dict(:alg=>FBDF(linsolve = KrylovJL_GMRES(), autodiff = false)), - Dict(:alg=>KenCarp4(linsolve = KrylovJL_GMRES(), autodiff = false)) + Dict(:alg=>TRBDF2(linsolve = KrylovJL_GMRES(), autodiff = AutoFiniteDiff())), + Dict(:alg=>QNDF(linsolve = KrylovJL_GMRES(), autodiff = AutoFiniteDiff())), + Dict(:alg=>FBDF(linsolve = KrylovJL_GMRES(), autodiff = AutoFiniteDiff())), + Dict(:alg=>KenCarp4(linsolve = KrylovJL_GMRES(), autodiff = AutoFiniteDiff())) ]; ``` @@ -219,11 +220,11 @@ plot(wp; label = names) ```julia setups = [ Dict(:alg=>TRBDF2( - linsolve = KrylovJL_GMRES(), autodiff = false, precs = incompletelu, concrete_jac = true)), - Dict(:alg=>QNDF(linsolve = KrylovJL_GMRES(), autodiff = false, precs = incompletelu, concrete_jac = true)), - Dict(:alg=>FBDF(linsolve = KrylovJL_GMRES(), autodiff = false, precs = incompletelu, concrete_jac = true)), + linsolve = KrylovJL_GMRES(; precs = incompletelu), autodiff = AutoFiniteDiff(), concrete_jac = true)), + Dict(:alg=>QNDF(linsolve = KrylovJL_GMRES(; precs = incompletelu), autodiff = AutoFiniteDiff(), concrete_jac = true)), + Dict(:alg=>FBDF(linsolve = KrylovJL_GMRES(; precs = incompletelu), autodiff = AutoFiniteDiff(), concrete_jac = true)), Dict(:alg=>KenCarp4( - linsolve = KrylovJL_GMRES(), autodiff = false, precs = incompletelu, concrete_jac = true)) + linsolve = KrylovJL_GMRES(; precs = incompletelu), autodiff = AutoFiniteDiff(), concrete_jac = true)) ]; ``` @@ -243,10 +244,10 @@ We designate the solvers we wish to use. ```julia setups = [ - Dict(:alg=>TRBDF2(linsolve = KLUFactorization(), autodiff = false)), - Dict(:alg=>QNDF(linsolve = KLUFactorization(), autodiff = false)), - Dict(:alg=>FBDF(linsolve = KLUFactorization(), autodiff = false)), - Dict(:alg=>KenCarp4(linsolve = KLUFactorization(), autodiff = false)) + Dict(:alg=>TRBDF2(linsolve = KLUFactorization(), autodiff = AutoFiniteDiff())), + Dict(:alg=>QNDF(linsolve = KLUFactorization(), autodiff = AutoFiniteDiff())), + Dict(:alg=>FBDF(linsolve = KLUFactorization(), autodiff = AutoFiniteDiff())), + Dict(:alg=>KenCarp4(linsolve = KLUFactorization(), autodiff = AutoFiniteDiff())) ]; ``` @@ -308,10 +309,10 @@ setups = [ :alg=>CVODE_BDF(linear_solver = :GMRES, prec = precilu, psetup = psetupilu, prec_side = 1), :prob_choice => 2), Dict( - :alg=>QNDF(linsolve = KrylovJL_GMRES(), autodiff = false, precs = incompletelu, concrete_jac = true), + :alg=>QNDF(linsolve = KrylovJL_GMRES(; precs = incompletelu), autodiff = AutoFiniteDiff(), concrete_jac = true), :prob_choice => 3), Dict( - :alg=>FBDF(linsolve = KrylovJL_GMRES(), autodiff = false, precs = incompletelu, concrete_jac = true), + :alg=>FBDF(linsolve = KrylovJL_GMRES(; precs = incompletelu), autodiff = AutoFiniteDiff(), concrete_jac = true), :prob_choice => 3), Dict(:alg=>Tsit5()) ]; diff --git a/benchmarks/Bio/multisite2.jmd b/benchmarks/Bio/multisite2.jmd index 48f5cec47..37fa0c410 100644 --- a/benchmarks/Bio/multisite2.jmd +++ b/benchmarks/Bio/multisite2.jmd @@ -17,6 +17,7 @@ using DiffEqBase, OrdinaryDiffEq, Catalyst, ReactionNetworkImporters, Sundials, Plots, DiffEqDevTools, ODEInterface, ODEInterfaceDiffEq, LSODA, TimerOutputs, LinearAlgebra, ModelingToolkit, BenchmarkTools, LinearSolve, RecursiveFactorization +using OrdinaryDiffEqAdamsBashforthMoulton, OrdinaryDiffEqBDF, OrdinaryDiffEqRosenbrock, OrdinaryDiffEqSDIRK, OrdinaryDiffEqStabilizedRK, OrdinaryDiffEqVerner gr() const to = TimerOutput() diff --git a/benchmarks/Bio/multistate.jmd b/benchmarks/Bio/multistate.jmd index 41bcea72a..e23ae0203 100644 --- a/benchmarks/Bio/multistate.jmd +++ b/benchmarks/Bio/multistate.jmd @@ -17,6 +17,7 @@ using DiffEqBase, OrdinaryDiffEq, Catalyst, ReactionNetworkImporters, Sundials, Plots, DiffEqDevTools, ODEInterface, ODEInterfaceDiffEq, LSODA, TimerOutputs, LinearAlgebra, ModelingToolkit, BenchmarkTools, RecursiveFactorization +using OrdinaryDiffEqAdamsBashforthMoulton, OrdinaryDiffEqBDF, OrdinaryDiffEqRosenbrock, OrdinaryDiffEqSDIRK, OrdinaryDiffEqStabilizedRK, OrdinaryDiffEqVerner gr() const to = TimerOutput() diff --git a/benchmarks/ComplicatedPDE/Filament.jmd b/benchmarks/ComplicatedPDE/Filament.jmd index 072d03dc8..4109dc5e8 100644 --- a/benchmarks/ComplicatedPDE/Filament.jmd +++ b/benchmarks/ComplicatedPDE/Filament.jmd @@ -14,9 +14,12 @@ First we will show the full model implementation. It is not necessary to underst The model is thus defined as follows: ```julia -using OrdinaryDiffEq, OrdinaryDiffEqStabilizedRK, OrdinaryDiffEqLowOrderRK, OrdinaryDiffEqSDIRK -using ODEInterfaceDiffEq, Sundials, DiffEqDevTools, LSODA, LinearSolve -using LinearAlgebra, RecursiveFactorization, SciMLLogging, ADTypes +using OrdinaryDiffEq, ODEInterfaceDiffEq, Sundials, DiffEqDevTools, LSODA, LinearSolve +using OrdinaryDiffEqBDF, OrdinaryDiffEqExponentialRK, OrdinaryDiffEqExtrapolation, + OrdinaryDiffEqFIRK, OrdinaryDiffEqLowOrderRK, OrdinaryDiffEqRosenbrock, + OrdinaryDiffEqSDIRK, OrdinaryDiffEqStabilizedRK +using SciMLLogging, ADTypes +using LinearAlgebra, RecursiveFactorization using Plots gr() ``` @@ -596,7 +599,7 @@ plot(wp) In the previous cases the analytical Jacobian is given and is used by the solvers. Now we will solve the same problem without the analytical Jacobian. -Note that the pre-caching means that the model is not compatible with autodifferentiation by ForwardDiff. Thus all of the native Julia solvers are set to `autodiff=false` to use DiffEqDiffTools.jl's numerical differentiation backend. We'll only benchmark the methods that did well before. +Note that the pre-caching means that the model is not compatible with autodifferentiation by ForwardDiff. Thus all of the native Julia solvers are set to `autodiff=AutoFiniteDiff()` to use DiffEqDiffTools.jl's numerical differentiation backend. We'll only benchmark the methods that did well before. ```julia N=20 diff --git a/benchmarks/ComplicatedPDE/Manifest.toml b/benchmarks/ComplicatedPDE/Manifest.toml index 747098a43..d33305cc9 100644 --- a/benchmarks/ComplicatedPDE/Manifest.toml +++ b/benchmarks/ComplicatedPDE/Manifest.toml @@ -1,31 +1,38 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.11" +julia_version = "1.11.9" manifest_format = "2.0" -project_hash = "178d80c4fdff4b27fb9d94b0cf98327f6a685399" +project_hash = "610e72053261b6e729295f58269038b922de1d74" [[deps.ADTypes]] -git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" +git-tree-sha1 = "bbc22a9a08a0ef6460041086d8a7b27940ed4ffd" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.21.0" -weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] +version = "1.22.0" [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" ADTypesConstructionBaseExt = "ConstructionBase" ADTypesEnzymeCoreExt = "EnzymeCore" + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] [deps.AbstractFFTs.extensions] AbstractFFTsChainRulesCoreExt = "ChainRulesCore" AbstractFFTsTestExt = "Test" + [deps.AbstractFFTs.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + [[deps.AbstractPlutoDingetjes]] deps = ["Pkg"] git-tree-sha1 = "6e1d2a35f2f90a4bc7c2ed98079b2ba09c35b83a" @@ -39,9 +46,9 @@ version = "0.4.5" [[deps.Accessors]] deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] -git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +git-tree-sha1 = "2eeb2c9bef11013efc6f8f97f32ee59b146b09fb" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.43" +version = "0.1.44" [deps.Accessors.extensions] AxisKeysExt = "AxisKeys" @@ -63,9 +70,9 @@ version = "0.1.43" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" +git-tree-sha1 = "0761717147821d696c9470a7a86364b2fbd22fd8" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.4.0" +version = "4.5.2" weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] @@ -80,7 +87,7 @@ version = "1.1.3" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.ArnoldiMethod]] deps = ["LinearAlgebra", "Random", "StaticArrays"] @@ -102,11 +109,12 @@ version = "3.5.2+0" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" +git-tree-sha1 = "54f895554d05c83e3dd59f6a396671dae8999573" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.22.0" +version = "7.24.0" [deps.ArrayInterface.extensions] + ArrayInterfaceAMDGPUExt = "AMDGPU" ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" @@ -121,6 +129,7 @@ version = "7.22.0" ArrayInterfaceTrackerExt = "Tracker" [deps.ArrayInterface.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" @@ -146,9 +155,25 @@ weakdeps = ["SparseArrays"] [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +version = "1.11.0" + +[[deps.BandedMatrices]] +deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] +git-tree-sha1 = "02fa77c70ba84361b9bc9ff28523bd9d78519265" +uuid = "aae01518-5342-5314-be14-df237901396f" +version = "1.11.0" + + [deps.BandedMatrices.extensions] + BandedMatricesSparseArraysExt = "SparseArrays" + CliqueTreesExt = "CliqueTrees" + + [deps.BandedMatrices.weakdeps] + CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Bijections]] git-tree-sha1 = "a2d308fcd4c2fb90e943cf9cd2fbfa9c32b69733" @@ -181,26 +206,26 @@ deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] git-tree-sha1 = "0f606a9894e2bcda541ceb82a91a13c5d450ed97" uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" version = "1.9.3" +weakdeps = ["Adapt", "BandedMatrices"] [deps.BlockArrays.extensions] BlockArraysAdaptExt = "Adapt" BlockArraysBandedMatricesExt = "BandedMatrices" - [deps.BlockArrays.weakdeps] - Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - [[deps.BracketingNonlinearSolve]] deps = ["CommonSolve", "ConcreteStructs", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "fad1448f07155b299bfb925ebf22f5d553bdfb6e" +git-tree-sha1 = "7ad7171d693ae5552ac43862e7f6b61df4471c2b" uuid = "70df07ce-3d50-431d-a3e7-ca6ddb60ac1e" -version = "1.10.0" -weakdeps = ["ChainRulesCore", "ForwardDiff"] +version = "1.12.1" [deps.BracketingNonlinearSolve.extensions] BracketingNonlinearSolveChainRulesCoreExt = ["ChainRulesCore", "ForwardDiff"] BracketingNonlinearSolveForwardDiffExt = "ForwardDiff" + [deps.BracketingNonlinearSolve.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" @@ -219,20 +244,10 @@ uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" version = "0.2.7" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d0efe2c6fdcdaa1c161d206aa8b933788397ec71" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.5+1" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.26.0" -weakdeps = ["SparseArrays"] - - [deps.ChainRulesCore.extensions] - ChainRulesCoreSparseArraysExt = "SparseArrays" +version = "1.18.6+0" [[deps.CloseOpenIntervals]] deps = ["Static", "StaticArrayInterface"] @@ -257,13 +272,11 @@ deps = ["FixedPointNumbers", "Random"] git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" version = "0.12.1" +weakdeps = ["StyledStrings"] [deps.ColorTypes.extensions] StyledStringsExt = "StyledStrings" - [deps.ColorTypes.weakdeps] - StyledStrings = "f489334b-da3d-4c2e-b8f0-e476e12c162b" - [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" @@ -376,9 +389,9 @@ version = "1.16.0" [[deps.DataStructures]] deps = ["OrderedCollections"] -git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" +git-tree-sha1 = "e86f4a2805f7f19bec5129bc9150c38208e5dc23" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.19.3" +version = "0.19.4" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -388,6 +401,7 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" [[deps.Dbus_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] @@ -401,15 +415,22 @@ git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" version = "1.9.1" +[[deps.Dictionaries]] +deps = ["Indexing", "Random", "Serialization"] +git-tree-sha1 = "a55766a9c8f66cf19ffcdbdb1444e249bb4ace33" +uuid = "85a47980-9c8c-11e8-2b9f-f7ca1fa99fb4" +version = "0.4.6" + [[deps.DiffEqBase]] -deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "63613a73dd21fed5bf5ebb3e3b183e7e902b02b2" +deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "2d7ca58e6ce2d1f7a435773d73d111741e283070" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.210.0" +version = "7.1.0" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" DiffEqBaseChainRulesCoreExt = "ChainRulesCore" + DiffEqBaseDynamicQuantitiesExt = "DynamicQuantities" DiffEqBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] DiffEqBaseFlexUnitsExt = "FlexUnits" DiffEqBaseForwardDiffExt = ["ForwardDiff"] @@ -428,6 +449,7 @@ version = "6.210.0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" + DynamicQuantities = "06fc5a27-2a28-4c7c-a15d-362465fb6821" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FlexUnits = "76e01b6b-c995-4ce6-8559-91e72a3d4e95" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" @@ -444,9 +466,9 @@ version = "6.210.0" [[deps.DiffEqCallbacks]] deps = ["ConcreteStructs", "DataStructures", "DiffEqBase", "DifferentiationInterface", "LinearAlgebra", "Markdown", "PrecompileTools", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "f17b863c2d5d496363fe36c8d8535cc6a33c9952" +git-tree-sha1 = "51f445c25b80c26c83c61520cde214adf8c05227" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "4.12.0" +version = "4.17.0" [deps.DiffEqCallbacks.extensions] DiffEqCallbacksFunctorsExt = "Functors" @@ -455,16 +477,16 @@ version = "4.12.0" Functors = "d9f16b24-f501-4c13-a1f2-28368ffc5196" [[deps.DiffEqDevTools]] -deps = ["CommonSolve", "DiffEqBase", "DiffEqNoiseProcess", "Distributed", "ExplicitImports", "LinearAlgebra", "Logging", "NLsolve", "RecipesBase", "RecursiveArrayTools", "RootedTrees", "SciMLBase", "Statistics", "StructArrays"] -git-tree-sha1 = "aa3bce2cf70194d1a4086b7d47a636d472fc7991" +deps = ["DiffEqBase", "DiffEqNoiseProcess", "Distributed", "LinearAlgebra", "Logging", "NLsolve", "RecipesBase", "RecursiveArrayTools", "RootedTrees", "SciMLBase", "Statistics", "StructArrays"] +git-tree-sha1 = "cc290a2fdad4d332ba6a88953eaf5800687ccd49" uuid = "f3b72e0c-5b89-59e1-b016-84e28bfd966d" -version = "2.50.0" +version = "3.0.0" [[deps.DiffEqNoiseProcess]] deps = ["CommonSolve", "DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "PoissonRandom", "QuadGK", "Random", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "b879ca516034469f28becdf01f85f56b45f518b9" +git-tree-sha1 = "5b5fe6eb9e994ff0de4e84fe149b03c706fd6403" uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" -version = "5.27.0" +version = "5.31.0" [deps.DiffEqNoiseProcess.extensions] DiffEqNoiseProcessOptimExt = "Optim" @@ -488,9 +510,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +git-tree-sha1 = "d0250552e42bf7cc36479fd38a6e30004c9e8c2b" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.7.16" +version = "0.7.17" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -500,7 +522,7 @@ version = "0.7.16" DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] - DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGPUArraysCoreExt = ["GPUArraysCore", "Adapt"] DifferentiationInterfaceGTPSAExt = "GTPSA" DifferentiationInterfaceMooncakeExt = "Mooncake" DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] @@ -514,6 +536,7 @@ version = "0.7.16" DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] [deps.DifferentiationInterface.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" @@ -541,21 +564,25 @@ deps = ["LinearAlgebra", "Statistics", "StatsAPI"] git-tree-sha1 = "c7e3a542b999843086e2f29dac96a618c105be1d" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" version = "0.10.12" -weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] DistancesChainRulesCoreExt = "ChainRulesCore" DistancesSparseArraysExt = "SparseArrays" + [deps.Distances.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" +git-tree-sha1 = "e421c1938fafab0165b04dc1a9dbe2a26272952c" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.123" +version = "0.25.125" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -573,10 +600,10 @@ uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" version = "0.9.5" [[deps.DomainSets]] -deps = ["CompositeTypes", "IntervalSets", "LinearAlgebra", "StaticArrays"] -git-tree-sha1 = "c249d86e97a7e8398ce2068dce4c078a1c3464de" +deps = ["CompositeTypes", "FunctionMaps", "IntervalSets", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "4599e0cd684f3ff6cbbab73c77553a3d01a8d74d" uuid = "5b8099bc-c8ec-5219-889f-1d9e522a28bf" -version = "0.7.16" +version = "0.7.18" [deps.DomainSets.extensions] DomainSetsMakieExt = "Makie" @@ -592,10 +619,10 @@ uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.6.0" [[deps.DynamicPolynomials]] -deps = ["Future", "LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Reexport", "Test"] -git-tree-sha1 = "3f50fa86c968fc1a9e006c07b6bc40ccbb1b704d" +deps = ["LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Reexport", "StarAlgebras", "Test"] +git-tree-sha1 = "5bfabc3827dfdd164359bad6800c115a81280c00" uuid = "7c1d4256-1411-5781-91ec-d7bc3513ac07" -version = "0.6.4" +version = "0.6.6" [[deps.EnumX]] git-tree-sha1 = "c49898e8438c828577f04b92fc9368c388ac783c" @@ -603,15 +630,18 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.7" [[deps.EnzymeCore]] -git-tree-sha1 = "990991b8aa76d17693a98e3a915ac7aa49f08d1a" +git-tree-sha1 = "c6ee69ee502060982d12dbaaf3d8fcb4e835a0d1" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.8.18" -weakdeps = ["Adapt", "ChainRulesCore"] +version = "0.8.20" [deps.EnzymeCore.extensions] AdaptExt = "Adapt" EnzymeCoreChainRulesCoreExt = "ChainRulesCore" + [deps.EnzymeCore.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + [[deps.EpollShim_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "8a4be429317c42cfae6a7fc03c31bad1970c310d" @@ -626,15 +656,9 @@ version = "0.1.11" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "27af30de8b5445644e8ffe3bcb0d72049c089cf1" +git-tree-sha1 = "8f05e9a2e7c2e3eb524102bb2926c5743c07fbe1" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.7.3+0" - -[[deps.ExplicitImports]] -deps = ["Markdown", "Pkg", "PrecompileTools", "TOML", "Test"] -git-tree-sha1 = "a8b6c26bf0ea9f8c4bad71e109a5fa64f34be392" -uuid = "7d51a73a-1435-4ff3-83d9-f097790105c7" -version = "1.15.0" +version = "2.8.0+0" [[deps.ExponentialUtilities]] deps = ["Adapt", "ArrayInterface", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "PrecompileTools", "Printf", "SparseArrays", "libblastrampoline_jll"] @@ -664,9 +688,9 @@ version = "0.4.5" [[deps.FFMPEG_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libva_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "01ba9d15e9eae375dc1eb9589df76b3572acd3f2" +git-tree-sha1 = "cac41ca6b2d399adfc95e51240566f8a60a80806" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "8.0.1+0" +version = "8.1.0+0" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "Libdl", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] @@ -676,15 +700,20 @@ version = "1.10.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6d6219a004b8cf1e0b4dbe27a2860b8e04eba0be" +git-tree-sha1 = "6866aec60ef98e3164cd8d6855225684207e9dff" uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.11+0" +version = "3.3.12+0" [[deps.FastBroadcast]] -deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "ab1b34570bcdf272899062e1a56285a53ecaae08" +deps = ["ArrayInterface", "LinearAlgebra"] +git-tree-sha1 = "7feeed2c9a7fa272189a5561bebf0c4ccaedb6ec" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.3.5" +version = "1.3.2" +weakdeps = ["Polyester", "Static"] + + [deps.FastBroadcast.extensions] + FastBroadcastPolyesterExt = "Polyester" + FastBroadcastStaticExt = "Static" [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" @@ -722,6 +751,7 @@ version = "1.3.1" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" +version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] @@ -744,9 +774,9 @@ version = "1.8.0" [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "9340ca07ca27093ff68418b7558ca37b05f8aeb1" +git-tree-sha1 = "f7017a4f337f8df189fcce98e32b67a1298a2115" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.29.0" +version = "2.31.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -779,9 +809,9 @@ version = "1.3.7" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "eef4c86803f47dcb61e9b8790ecaa96956fdd8ae" +git-tree-sha1 = "cddeab6487248a39dae1a960fff0ac17b2a28888" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "1.3.2" +version = "1.3.3" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -789,9 +819,9 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "2c5512e11c791d1baed2049c5652441b28fc6a31" +git-tree-sha1 = "70329abc09b886fd2c5d94ad2d9527639c421e3e" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.4+0" +version = "2.14.3+1" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -799,26 +829,42 @@ git-tree-sha1 = "7a214fdac5ed5f59a22c2d9a885a16da1c74bbc7" uuid = "559328eb-81f9-559d-9380-de523a88c83c" version = "1.0.17+0" +[[deps.FunctionMaps]] +deps = ["CompositeTypes", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "31bd99a57edf98990d1c21486032963955450e8d" +uuid = "a85aefff-f8ca-4649-a888-c8e5398bc76c" +version = "0.1.2" + [[deps.FunctionWrappers]] git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" version = "1.1.3" [[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +deps = ["FunctionWrappers", "PrecompileTools", "TruncatedStacktraces"] +git-tree-sha1 = "c1b0c3a166a2a393257aa888787ca817532e14ce" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" +version = "1.8.0" + + [deps.FunctionWrappersWrappers.extensions] + FunctionWrappersWrappersEnzymeExt = ["Enzyme", "EnzymeCore"] + FunctionWrappersWrappersMooncakeExt = "Mooncake" + + [deps.FunctionWrappersWrappers.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" +version = "1.11.0" [[deps.GLFW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] -git-tree-sha1 = "b7bfd56fa66616138dfe5237da4dc13bbd83c67f" +git-tree-sha1 = "9e0fb9e54594c47f278d75063980e43066e26e20" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.4.1+0" +version = "3.4.1+1" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -828,9 +874,9 @@ version = "0.2.0" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Qt6Wayland_jll", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] -git-tree-sha1 = "ee0585b62671ce88e48d3409733230b401c9775c" +git-tree-sha1 = "44716a1a667cb867ee0e9ec8edc31c3e4aa5afdc" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.73.22" +version = "0.73.24" weakdeps = ["IJulia"] [deps.GR.extensions] @@ -838,9 +884,9 @@ weakdeps = ["IJulia"] [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "7dd7173f7129a1b6f84e0f03e0890cd1189b0659" +git-tree-sha1 = "be8a1b8065959e24fdc1b51402f39f3b6f0f6653" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.73.22+0" +version = "0.73.24+0" [[deps.GaussianRandomFields]] deps = ["Arpack", "FFTW", "FastGaussQuadrature", "LinearAlgebra", "Random", "RecipesBase", "SpecialFunctions", "Statistics", "StatsBase"] @@ -880,9 +926,9 @@ version = "3.7.0+0" [[deps.Git_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "dc34a3e3d96b4ed305b641e626dc14c12b7824b8" +git-tree-sha1 = "0dd4cfb426924210c8f42742751cbde74b27bfa3" uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb" -version = "2.53.0+0" +version = "2.54.0+0" [[deps.Glib_jll]] deps = ["Artifacts", "GettextRuntime_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] @@ -898,9 +944,9 @@ version = "1.3.15+0" [[deps.Graphs]] deps = ["ArnoldiMethod", "DataStructures", "Inflate", "LinearAlgebra", "Random", "SimpleTraits", "SparseArrays", "Statistics"] -git-tree-sha1 = "031d63d09bd3e6e319df66bb466f5c3e8d147bee" +git-tree-sha1 = "7eb45fe833a5b7c51cf6d89c5a841d5967e44be3" uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" -version = "1.13.4" +version = "1.14.0" [deps.Graphs.extensions] GraphsSharedArraysExt = "SharedArrays" @@ -916,9 +962,9 @@ version = "1.0.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "PrecompileTools", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5e6fe50ae7f23d171f44e311c2960294aaa0beb5" +git-tree-sha1 = "51059d23c8bb67911a2e6fd5130229113735fc7e" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.19" +version = "1.11.0" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll"] @@ -965,9 +1011,14 @@ version = "0.1.1" [[deps.ImplicitDiscreteSolve]] deps = ["ConcreteStructs", "DiffEqBase", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "OrdinaryDiffEqCore", "Reexport", "SciMLBase", "SymbolicIndexingInterface"] -git-tree-sha1 = "2a8b83132a262302305f359d3b50cba598f9785e" +git-tree-sha1 = "dc9f649cbcdd4f2b402d7cbbd5cf61517b45ad5a" uuid = "3263718b-31ed-49cf-8a0f-35a466e8af96" -version = "1.7.0" +version = "2.0.0" + +[[deps.Indexing]] +git-tree-sha1 = "ce1566720fd6b19ff3411404d4b977acd4814f9f" +uuid = "313cdc1a-70c2-5d6a-ae34-0150d3930a38" +version = "1.1.1" [[deps.Inflate]] git-tree-sha1 = "d1b1b796e47d94588b3757fe84fbf65a5ec4a80d" @@ -988,11 +1039,12 @@ version = "2025.2.0+0" [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" +version = "1.11.0" [[deps.IntervalSets]] -git-tree-sha1 = "d966f85b3b7a8e49d034d27a189e9a4874b4391a" +git-tree-sha1 = "79d6bd28c8d9bccc2229784f1bd637689b256377" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.13" +version = "0.7.14" weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] @@ -1046,29 +1098,30 @@ version = "0.2.1" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "b6893345fd6658c8e475d40155789f4860ac3b21" +git-tree-sha1 = "c0c9b76f3520863909825cbecdef58cd63de705a" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.1.4+0" +version = "3.1.5+0" [[deps.JumpProcesses]] deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "PoissonRandom", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "SymbolicIndexingInterface"] -git-tree-sha1 = "3dee0073e2512598de97a98f5f30126cd7bdd9a7" +git-tree-sha1 = "2a8e5b9b90ef0da05f61904d0a39a7b1c0a83310" uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" -version = "9.22.2" +version = "9.28.0" [deps.JumpProcesses.extensions] JumpProcessesKernelAbstractionsExt = ["Adapt", "KernelAbstractions"] + JumpProcessesOrdinaryDiffEqCoreExt = "OrdinaryDiffEqCore" [deps.JumpProcesses.weakdeps] Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" - FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + OrdinaryDiffEqCore = "bbf590c4-e513-4bbe-9b18-05decba2e5d8" [[deps.Krylov]] deps = ["LinearAlgebra", "Printf", "SparseArrays"] -git-tree-sha1 = "125d65fe5042faf078383312dd060adf11d90802" +git-tree-sha1 = "c4d19f51afc7ba2afbe32031b8f2d21b11c9e26e" uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" -version = "0.10.5" +version = "0.10.6" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1078,9 +1131,9 @@ version = "3.100.3+0" [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "aaafe88dccbd957a8d82f7d05be9b69172e0cee3" +git-tree-sha1 = "17b94ecafcfa45e8360a4fc9ca6b583b049e4e37" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "4.0.1+0" +version = "4.1.0+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1090,9 +1143,9 @@ version = "18.1.8+0" [[deps.LSODA]] deps = ["Compat", "DiffEqBase", "LSODA_jll", "LinearAlgebra", "Parameters", "Printf", "SciMLBase"] -git-tree-sha1 = "49c00ced68a8033b30fb1009b8dea7871aa9e928" +git-tree-sha1 = "0a062653ab0a72c7a04f53f4bd6ca83a180937b4" uuid = "7f56f5a3-f504-529b-bc02-0b1fe5e64312" -version = "0.7.5" +version = "0.7.7" [[deps.LSODA_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1100,12 +1153,6 @@ git-tree-sha1 = "3c5277e990a9026f31a35ca6c4acddc8a706a38c" uuid = "aae0fff6-70f8-51e1-979a-8150c7cc74bd" version = "0.1.2+0" -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "1c602b1127f4751facb671441ca72715cc95938a" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.3+0" - [[deps.LaTeXStrings]] git-tree-sha1 = "dda21b8cbd6a6c40d9d02a73230f9d70fed6918c" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" @@ -1138,6 +1185,7 @@ version = "0.1.17" [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" +version = "1.11.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] @@ -1147,16 +1195,17 @@ version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.4.0+0" +version = "8.6.0+0" [[deps.LibGit2]] deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +version = "1.11.0" [[deps.LibGit2_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.6.4+0" +version = "1.7.2+0" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] @@ -1165,6 +1214,7 @@ version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" +version = "1.11.0" [[deps.Libffi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1186,9 +1236,9 @@ version = "1.18.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "97bbca976196f2a1eb9607131cb108c69ec3f8a6" +git-tree-sha1 = "cc3ad4faf30015a3e8094c9b5b7f19e85bdf2386" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] @@ -1198,15 +1248,15 @@ version = "4.7.2+0" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d0205286d9eceadc518742860bf23f703779a3d6" +git-tree-sha1 = "d620582b1f0cbe2c72dd1d5bd195a9ce73370ab1" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.LineSearch]] deps = ["ADTypes", "CommonSolve", "ConcreteStructs", "FastClosures", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "SciMLBase", "SciMLJacobianOperators", "StaticArraysCore"] -git-tree-sha1 = "9f7253c0574b4b585c8909232adb890930da980a" +git-tree-sha1 = "fd58a77c92e7c8f1db25c9839127d52943a49349" uuid = "87fe0de2-c867-4266-b59a-2f0a94fc965b" -version = "0.1.6" +version = "0.1.9" weakdeps = ["LineSearches"] [deps.LineSearch.extensions] @@ -1221,33 +1271,41 @@ version = "7.5.1" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +version = "1.11.0" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "f9e19cacc616da676db6fbb74827d3979ad6c0ae" +deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] +git-tree-sha1 = "42b5cb44317e89ef75dd841c9c8eba9045bf9ff0" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "3.59.1" +version = "3.75.0" [deps.LinearSolve.extensions] LinearSolveAMDGPUExt = "AMDGPU" + LinearSolveAlgebraicMultigridExt = "AlgebraicMultigrid" LinearSolveBLISExt = ["blis_jll", "LAPACK_jll"] LinearSolveBandedMatricesExt = "BandedMatrices" LinearSolveBlockDiagonalsExt = "BlockDiagonals" LinearSolveCUDAExt = "CUDA" LinearSolveCUDSSExt = "CUDSS" LinearSolveCUSOLVERRFExt = ["CUSOLVERRF", "SparseArrays"] + LinearSolveChainRulesCoreExt = "ChainRulesCore" LinearSolveCliqueTreesExt = ["CliqueTrees", "SparseArrays"] + LinearSolveElementalExt = "Elemental" LinearSolveEnzymeExt = ["EnzymeCore", "SparseArrays"] LinearSolveFastAlmostBandedMatricesExt = "FastAlmostBandedMatrices" LinearSolveFastLapackInterfaceExt = "FastLapackInterface" LinearSolveForwardDiffExt = "ForwardDiff" + LinearSolveGinkgoExt = ["Ginkgo", "SparseArrays"] LinearSolveHYPREExt = "HYPRE" LinearSolveIterativeSolversExt = "IterativeSolvers" LinearSolveKernelAbstractionsExt = "KernelAbstractions" LinearSolveKrylovKitExt = "KrylovKit" LinearSolveMetalExt = "Metal" LinearSolveMooncakeExt = "Mooncake" + LinearSolvePETScCSRExt = ["PETSc", "SparseArrays", "SparseMatricesCSR"] LinearSolvePETScExt = ["PETSc", "SparseArrays"] + LinearSolvePETScMPIExt = ["PETSc", "PartitionedArrays", "SparseArrays", "SparseMatricesCSR"] + LinearSolveParUExt = ["ParU_jll", "SparseArrays"] LinearSolvePardisoExt = ["Pardiso", "SparseArrays"] LinearSolveRecursiveFactorizationExt = "RecursiveFactorization" LinearSolveSparseArraysExt = "SparseArrays" @@ -1255,16 +1313,20 @@ version = "3.59.1" [deps.LinearSolve.weakdeps] AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + AlgebraicMultigrid = "2169fc97-5a83-5252-b627-83903c6c433c" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" CUSOLVERRF = "a8cc9031-bad2-4722-94f5-40deabb4245c" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" + Elemental = "902c3f28-d1ec-5e7e-8399-a24c3845ee38" EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" FastLapackInterface = "29a986be-02c6-4525-aec4-84b980013641" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Ginkgo = "4c8bd3c9-ead9-4b5e-a625-08f1338ba0ec" HYPRE = "b5ffcf37-a2bd-41ab-a3da-4bd9bc8ad771" IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" @@ -1273,9 +1335,12 @@ version = "3.59.1" Metal = "dde4c033-4e86-420c-a63e-0dd931031962" Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" PETSc = "ace2c81b-2b5f-4b1e-a30d-d662738edfe0" + ParU_jll = "9e0b026c-e8ce-559c-a2c4-6a3d5c955bc9" Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" + PartitionedArrays = "5a9dfac6-5c52-46f7-8278-5e2210713be9" RecursiveFactorization = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseMatricesCSR = "a0a7dd2c-ebf4-11e9-1f05-cf50bc540ca1" Sparspak = "e56a9233-b9d6-4f03-8d0f-1825330902ac" blis_jll = "6136c539-28a5-5bf0-87cc-b183200dce32" @@ -1297,6 +1362,7 @@ version = "0.3.29" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" +version = "1.11.0" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] @@ -1340,6 +1406,7 @@ version = "0.1.8" [[deps.Markdown]] deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +version = "1.11.0" [[deps.MaybeInplace]] deps = ["ArrayInterface", "LinearAlgebra", "MacroTools"] @@ -1360,7 +1427,7 @@ version = "1.1.10" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.1010+0" +version = "2.28.6+0" [[deps.Measures]] git-tree-sha1 = "b513cedd20d9c914783d8ad83d08120702bf2c77" @@ -1375,24 +1442,31 @@ version = "1.2.0" [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" +version = "1.11.0" [[deps.ModelingToolkit]] -deps = ["ADTypes", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "ConstructionBase", "DataStructures", "DiffEqBase", "DifferentiationInterface", "DocStringExtensions", "FillArrays", "FindFirstFunctions", "ForwardDiff", "Graphs", "InteractiveUtils", "Libdl", "LinearAlgebra", "ModelingToolkitBase", "ModelingToolkitTearing", "Moshi", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "StateSelection", "StaticArrays", "SymbolicCompilerPasses", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] -git-tree-sha1 = "29e0e2c354d8a35f032985a9bb8505bf59e64972" +deps = ["ADTypes", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "ConstructionBase", "DataStructures", "DiffEqBase", "DifferentiationInterface", "DocStringExtensions", "FillArrays", "ForwardDiff", "Graphs", "InteractiveUtils", "Libdl", "LinearAlgebra", "ModelingToolkitBase", "ModelingToolkitTearing", "Moshi", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "StateSelection", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] +git-tree-sha1 = "8527fee82ed8dc6934827b447b0555674c3ba1be" uuid = "961ee093-0014-501f-94e3-6117800e7a78" -version = "11.12.0" +version = "11.24.1" [deps.ModelingToolkit.extensions] MTKFMIExt = "FMIImport" + MTKOrdinaryDiffEqBDFExt = "OrdinaryDiffEqBDF" + MTKOrdinaryDiffEqDefaultExt = "OrdinaryDiffEqDefault" + MTKOrdinaryDiffEqRosenbrockExt = "OrdinaryDiffEqRosenbrock" [deps.ModelingToolkit.weakdeps] FMIImport = "9fcbc62e-52a0-44e9-a616-1359a0008194" + OrdinaryDiffEqBDF = "6ad6398a-0878-4a85-9266-38940aa047c8" + OrdinaryDiffEqDefault = "50262376-6c5a-4cf5-baba-aaf4f84d72d7" + OrdinaryDiffEqRosenbrock = "43230ef6-c299-4910-a778-202eb28ce4ce" [[deps.ModelingToolkitBase]] -deps = ["ADTypes", "AbstractTrees", "ArrayInterface", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffRules", "DifferentiationInterface", "DocStringExtensions", "DomainSets", "EnumX", "EnzymeCore", "ExprTools", "FillArrays", "FindFirstFunctions", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "ImplicitDiscreteSolve", "InteractiveUtils", "JumpProcesses", "Libdl", "LinearAlgebra", "Moshi", "NaNMath", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Random", "ReadOnlyDicts", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "SciMLPublic", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] -git-tree-sha1 = "e664f398456fd452f9f8f49b7920e6482bf85d3e" +deps = ["ADTypes", "AbstractTrees", "ArrayInterface", "BandedMatrices", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffRules", "DifferentiationInterface", "DocStringExtensions", "DomainSets", "EnumX", "EnzymeCore", "ExprTools", "FillArrays", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "ImplicitDiscreteSolve", "InteractiveUtils", "JumpProcesses", "Libdl", "LinearAlgebra", "Moshi", "NaNMath", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Random", "ReadOnlyDicts", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] +git-tree-sha1 = "d52da5508ed6c42b4e7c01356287d7114f3e13db" uuid = "7771a370-6774-4173-bd38-47e70ca0b839" -version = "1.17.0" +version = "1.33.1" [deps.ModelingToolkitBase.extensions] MTKBifurcationKitExt = "BifurcationKit" @@ -1421,10 +1495,10 @@ version = "1.17.0" Pyomo = "0e8e1daf-01b5-4eba-a626-3897743a3816" [[deps.ModelingToolkitTearing]] -deps = ["BipartiteGraphs", "CommonSolve", "DocStringExtensions", "Graphs", "LinearAlgebra", "ModelingToolkitBase", "Moshi", "OffsetArrays", "OrderedCollections", "SciMLBase", "Setfield", "SparseArrays", "StateSelection", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics"] -git-tree-sha1 = "4125939a88a40fb9225bc181a2e3798db50707ba" +deps = ["BipartiteGraphs", "CommonSolve", "DocStringExtensions", "Graphs", "LinearAlgebra", "ModelingToolkitBase", "Moshi", "OffsetArrays", "OrderedCollections", "SciMLBase", "Setfield", "SparseArrays", "StateSelection", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UUIDs"] +git-tree-sha1 = "3ad8028ba31ef212307586416f1b341b5e8d4eb9" uuid = "6bb917b9-1269-42b9-9f7c-b0dca72083ab" -version = "1.4.0" +version = "1.13.3" [[deps.Moshi]] deps = ["ExproniconLite", "Jieko"] @@ -1434,7 +1508,7 @@ version = "0.3.7" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2025.12.2" +version = "2023.12.12" [[deps.MuladdMacro]] git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" @@ -1442,15 +1516,17 @@ uuid = "46d2c3a1-f734-5fdb-9937-b9b9aeba4221" version = "0.2.4" [[deps.MultivariatePolynomials]] -deps = ["DataStructures", "LinearAlgebra", "MutableArithmetics"] -git-tree-sha1 = "d38b8653b1cdfac5a7da3b819c0a8d6024f9a18c" +deps = ["DataStructures", "LinearAlgebra", "MutableArithmetics", "StarAlgebras"] +git-tree-sha1 = "4838893d9b035c2f6967c0d533350e1755b58a70" uuid = "102ac46a-7ee4-5c85-9060-abc95bfdeaa3" -version = "0.5.13" -weakdeps = ["ChainRulesCore"] +version = "0.5.19" [deps.MultivariatePolynomials.extensions] MultivariatePolynomialsChainRulesCoreExt = "ChainRulesCore" + [deps.MultivariatePolynomials.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + [[deps.Mustache]] deps = ["Printf", "Tables"] git-tree-sha1 = "3cbd5dda543bc59f2e482607ccf84b633724fc32" @@ -1459,9 +1535,9 @@ version = "1.0.21" [[deps.MutableArithmetics]] deps = ["LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "22df8573f8e7c593ac205455ca088989d0a2c7a0" +git-tree-sha1 = "7c25249fc13a070f5ba433c50e21e22bb33c6fb0" uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" -version = "1.6.7" +version = "1.7.1" [[deps.NLSolversBase]] deps = ["ADTypes", "DifferentiationInterface", "Distributed", "FiniteDiff", "ForwardDiff"] @@ -1486,10 +1562,10 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.NonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SciMLLogging", "SimpleNonlinearSolve", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "da41d5cd90c1118f5a8914392cf561263a1d09cb" +deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SciMLLogging", "Setfield", "SimpleNonlinearSolve", "StaticArraysCore", "SymbolicIndexingInterface"] +git-tree-sha1 = "ae0b0f875e4dfda538ab6977ec7939126ee9a1fe" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "4.15.0" +version = "4.19.0" [deps.NonlinearSolve.extensions] NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" @@ -1519,10 +1595,10 @@ version = "4.15.0" Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" [[deps.NonlinearSolveBase]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "LinearAlgebra", "LogExpFunctions", "Markdown", "MaybeInplace", "PreallocationTools", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "7208e90967acd77aa6b4d46ac65cc5ac1643794c" +deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "LogExpFunctions", "Markdown", "MaybeInplace", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] +git-tree-sha1 = "a19a5df29ef2b197499fc631fa1a59385ae15262" uuid = "be0214bd-f91f-a760-ac4e-3421ce2b2da0" -version = "2.14.0" +version = "2.25.0" [deps.NonlinearSolveBase.extensions] NonlinearSolveBaseBandedMatricesExt = "BandedMatrices" @@ -1552,15 +1628,15 @@ version = "2.14.0" [[deps.NonlinearSolveFirstOrder]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConcreteStructs", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLJacobianOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "df31d105d8e7254447256a44606f2a7e98b61aba" +git-tree-sha1 = "ce68820a4f421fb5bee7ec4dcf875aff33886bfb" uuid = "5959db7a-ea39-4486-b5fe-2dd0bf03d60d" -version = "1.11.1" +version = "2.1.1" [[deps.NonlinearSolveQuasiNewton]] deps = ["ArrayInterface", "CommonSolve", "ConcreteStructs", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLOperators", "StaticArraysCore"] -git-tree-sha1 = "ade27e8e9566b6cec63ee62f6a6650a11cf9a2eb" +git-tree-sha1 = "538432ca1aea8bf63db02929bf870501f8a7c64c" uuid = "9a2c21bd-3a47-402d-9113-8faf9a0ee114" -version = "1.12.0" +version = "1.13.1" weakdeps = ["ForwardDiff"] [deps.NonlinearSolveQuasiNewton.extensions] @@ -1568,9 +1644,9 @@ weakdeps = ["ForwardDiff"] [[deps.NonlinearSolveSpectralMethods]] deps = ["CommonSolve", "ConcreteStructs", "LineSearch", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "eafd027b5cd768f19bb5de76c0e908a9065ddd36" +git-tree-sha1 = "a3781e12becdf0ce5520bd97ec617e879bf4e9f2" uuid = "26075421-4e9a-44e1-8bd1-420ed7ad02b2" -version = "1.6.0" +version = "1.7.1" weakdeps = ["ForwardDiff"] [deps.NonlinearSolveSpectralMethods.extensions] @@ -1583,10 +1659,10 @@ uuid = "54ca160b-1b9f-5127-a996-1867f4bc2a2c" version = "0.5.0" [[deps.ODEInterfaceDiffEq]] -deps = ["Compat", "DataStructures", "DiffEqBase", "FunctionWrappers", "LinearAlgebra", "ODEInterface", "Reexport", "SciMLBase"] -git-tree-sha1 = "5ae2d633cd00a1957c2f8bbe96b8ae2517605ac1" +deps = ["Compat", "DataStructures", "DiffEqBase", "FunctionWrappers", "LinearAlgebra", "ODEInterface", "Reexport", "SciMLBase", "SciMLLogging"] +git-tree-sha1 = "38fb6b73dcc72515c856cdbdcafb6419b5ea25c2" uuid = "09606e27-ecf5-54fc-bb29-004bd9f985bf" -version = "3.15.0" +version = "4.0.0" [[deps.ODEInterface_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -1611,14 +1687,14 @@ version = "1.3.6+0" [[deps.OpenBLAS32_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6065c4cff8fee6c6770b277af45d5082baacdba1" +git-tree-sha1 = "dd0d9979377e43918a80486a562ddedcc6d9bdf3" uuid = "656ef2d0-ae68-5445-9ca0-591084a874a2" -version = "0.3.24+0" +version = "0.3.33+0" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.23+5" +version = "0.3.27+1" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] @@ -1627,9 +1703,9 @@ version = "0.8.5+0" [[deps.OpenSSH_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "OpenSSL_jll", "Zlib_jll"] -git-tree-sha1 = "301412a644646fdc0ad67d0a87487466b491e53d" +git-tree-sha1 = "57baa4b81a24c2910afbb6d853aa0685e4312bf7" uuid = "9bd350c2-7e96-507f-8002-3f2e150b4e1b" -version = "10.2.1+0" +version = "10.3.1+0" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "NetworkOptions", "OpenSSL_jll", "Sockets"] @@ -1639,9 +1715,9 @@ version = "1.6.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "c9cbeda6aceffc52d8a0017e71db27c7a7c0beaf" +git-tree-sha1 = "2ac022577e5eac7da040de17776d51bb770cd895" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.5.5+0" +version = "3.5.6+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -1661,28 +1737,22 @@ uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.8.1" [[deps.OrdinaryDiffEq]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FillArrays", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "MacroTools", "MuladdMacro", "NonlinearSolve", "OrdinaryDiffEqAdamsBashforthMoulton", "OrdinaryDiffEqBDF", "OrdinaryDiffEqCore", "OrdinaryDiffEqDefault", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqExplicitRK", "OrdinaryDiffEqExponentialRK", "OrdinaryDiffEqExtrapolation", "OrdinaryDiffEqFIRK", "OrdinaryDiffEqFeagin", "OrdinaryDiffEqFunctionMap", "OrdinaryDiffEqHighOrderRK", "OrdinaryDiffEqIMEXMultistep", "OrdinaryDiffEqLinear", "OrdinaryDiffEqLowOrderRK", "OrdinaryDiffEqLowStorageRK", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqNordsieck", "OrdinaryDiffEqPDIRK", "OrdinaryDiffEqPRK", "OrdinaryDiffEqQPRK", "OrdinaryDiffEqRKN", "OrdinaryDiffEqRosenbrock", "OrdinaryDiffEqSDIRK", "OrdinaryDiffEqSSPRK", "OrdinaryDiffEqStabilizedIRK", "OrdinaryDiffEqStabilizedRK", "OrdinaryDiffEqSymplecticRK", "OrdinaryDiffEqTsit5", "OrdinaryDiffEqVerner", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleNonlinearSolve", "SparseArrays", "Static", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "924e1db15095c7df6b844231c00c40d756a7553d" +deps = ["ADTypes", "CommonSolve", "DocStringExtensions", "OrdinaryDiffEqBDF", "OrdinaryDiffEqCore", "OrdinaryDiffEqDefault", "OrdinaryDiffEqRosenbrock", "OrdinaryDiffEqTsit5", "OrdinaryDiffEqVerner", "SciMLBase"] +git-tree-sha1 = "4c411ca0fa291015bc4c23058799a7280c4223e4" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.108.0" - -[[deps.OrdinaryDiffEqAdamsBashforthMoulton]] -deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqLowOrderRK", "Polyester", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static"] -git-tree-sha1 = "8307937159c3aeec5f19f4b661d82d96d25a3ff1" -uuid = "89bda076-bce5-4f1c-845f-551c83cdda9a" -version = "1.9.0" +version = "7.0.0" [[deps.OrdinaryDiffEqBDF]] -deps = ["ADTypes", "ArrayInterface", "DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqSDIRK", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "034977a15cc83d7acb6864e10001f777d15123e2" +deps = ["ADTypes", "ArrayInterface", "DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqSDIRK", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "2a193931b5dc2400f7f4fb7593b23e0aca96a581" uuid = "6ad6398a-0878-4a85-9266-38940aa047c8" -version = "1.21.0" +version = "2.0.0" [[deps.OrdinaryDiffEqCore]] -deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ConcreteStructs", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FillArrays", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "Polyester", "PrecompileTools", "Preferences", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Static", "StaticArrayInterface", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "dc96b003f64b75f87f9cde208c1e5e3234fc241d" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ConcreteStructs", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "PrecompileTools", "Preferences", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "86c210d134f09139a294f0329006d6cc20275650" uuid = "bbf590c4-e513-4bbe-9b18-05decba2e5d8" -version = "3.9.0" +version = "4.0.0" [deps.OrdinaryDiffEqCore.extensions] OrdinaryDiffEqCoreMooncakeExt = "Mooncake" @@ -1694,169 +1764,84 @@ version = "3.9.0" [[deps.OrdinaryDiffEqDefault]] deps = ["ADTypes", "DiffEqBase", "EnumX", "LinearAlgebra", "LinearSolve", "OrdinaryDiffEqBDF", "OrdinaryDiffEqCore", "OrdinaryDiffEqRosenbrock", "OrdinaryDiffEqTsit5", "OrdinaryDiffEqVerner", "PrecompileTools", "Preferences", "Reexport", "SciMLBase"] -git-tree-sha1 = "eef7a901d2a38462c13c12a39da7876c7b9b4a25" +git-tree-sha1 = "c2ad58656aff6d468109df04a246b018e92b21d8" uuid = "50262376-6c5a-4cf5-baba-aaf4f84d72d7" -version = "1.12.0" +version = "2.1.0" [[deps.OrdinaryDiffEqDifferentiation]] -deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "LinearAlgebra", "LinearSolve", "OrdinaryDiffEqCore", "SciMLBase", "SciMLOperators", "SparseMatrixColorings", "StaticArrayInterface", "StaticArrays"] -git-tree-sha1 = "e9c79382bf6c8b93c1d10bbc50b5fe70dffe67c0" +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "LinearAlgebra", "LinearSolve", "OrdinaryDiffEqCore", "SciMLBase", "SciMLOperators", "SparseMatrixColorings", "StaticArraysCore"] +git-tree-sha1 = "faf3fe4824557bc72aa126a845586f71d377a70a" uuid = "4302a76b-040a-498a-8c04-15b101fed76b" -version = "2.1.0" +version = "3.0.0" weakdeps = ["SparseArrays"] [deps.OrdinaryDiffEqDifferentiation.extensions] OrdinaryDiffEqDifferentiationSparseArraysExt = "SparseArrays" -[[deps.OrdinaryDiffEqExplicitRK]] -deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] -git-tree-sha1 = "c5b900878b088776b8d1bd5a7b1d94e301e21c4e" -uuid = "9286f039-9fbf-40e8-bf65-aa933bdc4db0" -version = "1.9.0" - [[deps.OrdinaryDiffEqExponentialRK]] deps = ["ADTypes", "DiffEqBase", "ExponentialUtilities", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "RecursiveArrayTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "72156f954b199ff23dada0e8c0f12c44503b5cf9" +git-tree-sha1 = "689bcd9e3deff96fb551cccf53e31113d0c90325" uuid = "e0540318-69ee-4070-8777-9e2de6de23de" -version = "1.13.0" +version = "2.0.0" [[deps.OrdinaryDiffEqExtrapolation]] -deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "FastPower", "LinearSolve", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "Polyester", "RecursiveArrayTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "2c2b3839d8a7cd116adbce364e13e39f2ddf41b4" +deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "FastPower", "LinearSolve", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "RecursiveArrayTools", "Reexport", "SciMLBase"] +git-tree-sha1 = "8e75d645c06ff4bdd124b3234c3a008fc1053b7b" uuid = "becaefa8-8ca2-5cf9-886d-c06f3d2bd2c4" -version = "1.15.0" +version = "2.0.0" [[deps.OrdinaryDiffEqFIRK]] -deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "FastGaussQuadrature", "FastPower", "LinearAlgebra", "LinearSolve", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "Polyester", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators"] -git-tree-sha1 = "342c716e0c15ab44203f68a78f98800ec560df82" +deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "FastGaussQuadrature", "FastPower", "LinearAlgebra", "LinearSolve", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators"] +git-tree-sha1 = "837e43119bc6a4bd2d193479c590fc5841483535" uuid = "5960d6e9-dd7a-4743-88e7-cf307b64f125" -version = "1.23.0" - -[[deps.OrdinaryDiffEqFeagin]] -deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static"] -git-tree-sha1 = "b123f64a8635a712ceb037a7d2ffe2a1875325d3" -uuid = "101fe9f7-ebb6-4678-b671-3a81e7194747" -version = "1.8.0" - -[[deps.OrdinaryDiffEqFunctionMap]] -deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static"] -git-tree-sha1 = "cbd291508808caf10cf455f974c2025e886ed2a3" -uuid = "d3585ca7-f5d3-4ba6-8057-292ed1abd90f" -version = "1.9.0" - -[[deps.OrdinaryDiffEqHighOrderRK]] -deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static"] -git-tree-sha1 = "9584dcc90cf10216de7aa0f2a1edc0f54d254cf6" -uuid = "d28bc4f8-55e1-4f49-af69-84c1a99f0f58" -version = "1.9.0" - -[[deps.OrdinaryDiffEqIMEXMultistep]] -deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "Reexport", "SciMLBase"] -git-tree-sha1 = "9280abaf9ac36d60dd774113f7ce8a7f826d6e2e" -uuid = "9f002381-b378-40b7-97a6-27a27c83f129" -version = "1.12.0" - -[[deps.OrdinaryDiffEqLinear]] -deps = ["DiffEqBase", "ExponentialUtilities", "LinearAlgebra", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators"] -git-tree-sha1 = "c92913fa5942ed9bc748f3e79a5c693c8ec0c3d7" -uuid = "521117fe-8c41-49f8-b3b6-30780b3f0fb5" -version = "1.10.0" +version = "2.0.0" [[deps.OrdinaryDiffEqLowOrderRK]] -deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static"] -git-tree-sha1 = "78223e34d4988070443465cd3f2bdc38d6bd14b0" +deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase"] +git-tree-sha1 = "def7e70848495f32963316dc2218ea30f0d290e2" uuid = "1344f307-1e59-4825-a18e-ace9aa3fa4c6" -version = "1.10.0" - -[[deps.OrdinaryDiffEqLowStorageRK]] -deps = ["Adapt", "DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static", "StaticArrays"] -git-tree-sha1 = "bd032c73716bc538033af041ca8903df6c813bfd" -uuid = "b0944070-b475-4768-8dec-fb6eb410534d" -version = "1.12.0" +version = "2.0.0" [[deps.OrdinaryDiffEqNonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "DiffEqBase", "FastBroadcast", "FastClosures", "ForwardDiff", "LinearAlgebra", "LinearSolve", "MuladdMacro", "NonlinearSolve", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "PreallocationTools", "RecursiveArrayTools", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleNonlinearSolve", "SparseArrays", "StaticArrays"] -git-tree-sha1 = "a75727e93ffef0f0bc408372988f7bc0767b1781" +deps = ["ADTypes", "ArrayInterface", "DiffEqBase", "FastBroadcast", "FastClosures", "ForwardDiff", "LinearAlgebra", "LinearSolve", "MuladdMacro", "NonlinearSolve", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "PreallocationTools", "RecursiveArrayTools", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleNonlinearSolve", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "c3e92bdb7bf16385e6f7b505f78601a2708eff28" uuid = "127b3ac7-2247-4354-8eb6-78cf4e7c58e8" -version = "1.23.0" - -[[deps.OrdinaryDiffEqNordsieck]] -deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqTsit5", "Polyester", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static"] -git-tree-sha1 = "facea9aaf48eed5e9ba66d8b3246e51417c084d0" -uuid = "c9986a66-5c92-4813-8696-a7ec84c806c8" -version = "1.9.0" - -[[deps.OrdinaryDiffEqPDIRK]] -deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "Polyester", "Reexport", "SciMLBase", "StaticArrays"] -git-tree-sha1 = "c95dd60623e11464e6079b77d2ce604fb399a02d" -uuid = "5dd0a6cf-3d4b-4314-aa06-06d4e299bc89" -version = "1.11.0" - -[[deps.OrdinaryDiffEqPRK]] -deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "Reexport", "SciMLBase"] -git-tree-sha1 = "baa77b7f874cda1f58f8c793fc7a9778e78a91c5" -uuid = "5b33eab2-c0f1-4480-b2c3-94bc1e80bda1" -version = "1.8.0" - -[[deps.OrdinaryDiffEqQPRK]] -deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static"] -git-tree-sha1 = "9e351a8f923c843adb48945318437e051f6ee139" -uuid = "04162be5-8125-4266-98ed-640baecc6514" -version = "1.8.0" - -[[deps.OrdinaryDiffEqRKN]] -deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "RecursiveArrayTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "b086c6d1b4153c9ff4b3f184a9ba7829413cc502" -uuid = "af6ede74-add8-4cfd-b1df-9a4dbb109d7a" -version = "1.10.0" +version = "2.0.0" [[deps.OrdinaryDiffEqRosenbrock]] -deps = ["ADTypes", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static"] -git-tree-sha1 = "f11347f3f01a5b00dae2b565e73795ee138cdc68" +deps = ["ADTypes", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqRosenbrockTableaus", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase"] +git-tree-sha1 = "803334224154e4a2a9d984547dd4449d3ca71c63" uuid = "43230ef6-c299-4910-a778-202eb28ce4ce" -version = "1.25.0" +version = "2.0.0" + +[[deps.OrdinaryDiffEqRosenbrockTableaus]] +git-tree-sha1 = "66acd57301ea9c79ff92b13b72135af258c141ab" +uuid = "b4bd8bb3-f80f-41d2-9b21-73a655b304b9" +version = "2.0.0" [[deps.OrdinaryDiffEqSDIRK]] -deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] -git-tree-sha1 = "0b766d820e3b948881f1f246899de9ef3d329224" +deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "8df990b85ea063a20df3f1b1dddab9d0afec985c" uuid = "2d112036-d095-4a1e-ab9a-08536f3ecdbf" -version = "1.12.0" - -[[deps.OrdinaryDiffEqSSPRK]] -deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static", "StaticArrays"] -git-tree-sha1 = "8abc61382a0c6469aa9c3bff2d61c9925a088320" -uuid = "669c94d9-1f4b-4b64-b377-1aa079aa2388" -version = "1.11.0" - -[[deps.OrdinaryDiffEqStabilizedIRK]] -deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqStabilizedRK", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays"] -git-tree-sha1 = "cf6856c731ddf9866e3e22612cce5e270f071545" -uuid = "e3e12d00-db14-5390-b879-ac3dd2ef6296" -version = "1.11.0" +version = "2.0.0" [[deps.OrdinaryDiffEqStabilizedRK]] -deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays"] -git-tree-sha1 = "d156a972fa7bc37bf8377d33a7d51d152e354d4c" +deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase"] +git-tree-sha1 = "bc420549cf48588a08a684f794a4918db99921ae" uuid = "358294b1-0aab-51c3-aafe-ad5ab194a2ad" -version = "1.8.0" - -[[deps.OrdinaryDiffEqSymplecticRK]] -deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "RecursiveArrayTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "9b783806fe2dc778649231cb3932cb71b63222d9" -uuid = "fa646aed-7ef9-47eb-84c4-9443fc8cbfa8" -version = "1.11.0" +version = "2.0.0" [[deps.OrdinaryDiffEqTsit5]] -deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static", "TruncatedStacktraces"] -git-tree-sha1 = "8be4cba85586cd2efa6c76d1792c548758610901" +deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "d9cedcfa2cdae8859b4510b9d01ada9852cd6d9d" uuid = "b1df2697-797e-41e3-8120-5422d3b24e4a" -version = "1.9.0" +version = "2.0.0" [[deps.OrdinaryDiffEqVerner]] -deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static", "TruncatedStacktraces"] -git-tree-sha1 = "5ca5dbbfea89e14f283ce9fe2301c528ff4ec007" +deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "fb8ae6a290beed2ef61fa2e7571d921e1100c365" uuid = "79d7bb75-1356-48c1-b8c0-6832512096c2" -version = "1.11.0" +version = "2.0.0" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -1875,9 +1860,9 @@ weakdeps = ["StatsBase"] [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "0662b083e11420952f2e62e17eddae7fc07d5997" +git-tree-sha1 = "58e5ed5e386e156bd93e86b305ebd21ac63d2d04" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" -version = "1.57.0+0" +version = "1.57.1+0" [[deps.Parameters]] deps = ["OrderedCollections", "UnPack"] @@ -1887,9 +1872,9 @@ version = "0.12.3" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "7d2f8f21da5db6a806faf7b9b292296da42b2810" +git-tree-sha1 = "5d5e0a78e971354b1c7bff0655d11fdc1b0e12c8" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.3" +version = "2.8.4" [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] @@ -1898,9 +1883,13 @@ uuid = "30392449-352a-5448-841d-b1acce4e97dc" version = "0.44.2+0" [[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.10.0" +version = "1.11.0" +weakdeps = ["REPL"] + + [deps.Pkg.extensions] + REPLExt = "REPL" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1954,9 +1943,9 @@ version = "0.2.2" [[deps.PreallocationTools]] deps = ["Adapt", "ArrayInterface", "PrecompileTools"] -git-tree-sha1 = "dc8d6bde5005a0eac05ae8faf1eceaaca166cfa4" +git-tree-sha1 = "e16b73bf892c55d16d53c9c0dbd0fb31cb7e25da" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "1.1.2" +version = "1.2.0" [deps.PreallocationTools.extensions] PreallocationToolsForwardDiffExt = "ForwardDiff" @@ -1989,6 +1978,7 @@ version = "0.5.7" [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" +version = "1.11.0" [[deps.PtrArrays]] git-tree-sha1 = "4fbbafbc6251b883f4d2705356f3641f3652a7fe" @@ -1997,33 +1987,39 @@ version = "1.4.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "34f7e5d2861083ec7596af8b8c092531facf2192" +git-tree-sha1 = "d7a4bff94f42208ce3cf6bc8e4e7d1d663e7ee8b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.8.2+2" +version = "6.10.2+1" [[deps.Qt6Declarative_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll", "Qt6ShaderTools_jll"] -git-tree-sha1 = "da7adf145cce0d44e892626e647f9dcbe9cb3e10" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll", "Qt6ShaderTools_jll", "Qt6Svg_jll"] +git-tree-sha1 = "d5b7dd0e226774cbd87e2790e34def09245c7eab" uuid = "629bc702-f1f5-5709-abd5-49b8460ea067" -version = "6.8.2+1" +version = "6.10.2+1" [[deps.Qt6ShaderTools_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll"] -git-tree-sha1 = "9eca9fc3fe515d619ce004c83c31ffd3f85c7ccf" +git-tree-sha1 = "4d85eedf69d875982c46643f6b4f66919d7e157b" uuid = "ce943373-25bb-56aa-8eca-768745ed7b5a" -version = "6.8.2+1" +version = "6.10.2+1" + +[[deps.Qt6Svg_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll"] +git-tree-sha1 = "81587ff5ff25a4e1115ce191e36285ede0334c9d" +uuid = "6de9746b-f93d-5813-b365-ba18ad4a9cf3" +version = "6.10.2+0" [[deps.Qt6Wayland_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll", "Qt6Declarative_jll"] -git-tree-sha1 = "8f528b0851b5b7025032818eb5abbeb8a736f853" +git-tree-sha1 = "672c938b4b4e3e0169a07a5f227029d4905456f2" uuid = "e99dba38-086e-5de3-a5b1-6e4c66e897c3" -version = "6.8.2+2" +version = "6.10.2+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9da16da70037ba9d701192e27befedefb91ec284" +git-tree-sha1 = "5e8e8b0ab68215d7a2b14b9921a946fee794749e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.11.2" +version = "2.11.3" [deps.QuadGK.extensions] QuadGKEnzymeExt = "Enzyme" @@ -2032,12 +2028,14 @@ version = "2.11.2" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" [[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" +version = "1.11.0" [[deps.Random]] deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +version = "1.11.0" [[deps.ReadOnlyArrays]] git-tree-sha1 = "e6f7ddf48cf141cb312b078ca21cb2d29d0dc11d" @@ -2064,16 +2062,19 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "LinearAlgebra", "PrecompileTools", "RecipesBase", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "18d2a6fd1ea9a8205cadb3a5704f8e51abdd748b" +git-tree-sha1 = "57b6fb3932fc8d1fc911f840d2c9de5fe3ba5008" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.48.0" +version = "4.3.0" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsCUDAExt = "CUDA" RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsFastBroadcastPolyesterExt = ["FastBroadcast", "Polyester"] RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsKernelAbstractionsExt = "KernelAbstractions" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsMooncakeExt = "Mooncake" RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] RecursiveArrayToolsStatisticsExt = "Statistics" @@ -2083,11 +2084,14 @@ version = "3.48.0" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" @@ -2149,20 +2153,22 @@ weakdeps = ["Plots"] [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "7257165d5477fd1025f7cb656019dcb6b0512c38" +git-tree-sha1 = "cfcdc949c4660544ab0fdeed169561cb22f835f4" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.17" +version = "0.5.18" [[deps.SCCNonlinearSolve]] deps = ["CommonSolve", "PrecompileTools", "Reexport", "SciMLBase", "SymbolicIndexingInterface"] -git-tree-sha1 = "b1fed39f2acdd4524c17b50ce6f4406be61b936d" +git-tree-sha1 = "521a298294a6fd11068df0148b4d57bb31550453" uuid = "9dfe8606-65a1-4bb3-9748-cb89d1561431" -version = "1.11.0" -weakdeps = ["ChainRulesCore"] +version = "1.13.0" [deps.SCCNonlinearSolve.extensions] SCCNonlinearSolveChainRulesCoreExt = "ChainRulesCore" + [deps.SCCNonlinearSolve.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" @@ -2179,10 +2185,10 @@ uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" version = "0.6.43" [[deps.SciMLBase]] -deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Moshi", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "d370a38786ebbb9cd5ec386b76d57e50e88c823c" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "Random", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] +git-tree-sha1 = "450a8405f96d0a7c6caabed0852def06ba8c6bf1" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.144.2" +version = "3.7.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2190,7 +2196,6 @@ version = "2.144.2" SciMLBaseDistributionsExt = "Distributions" SciMLBaseEnzymeExt = "Enzyme" SciMLBaseForwardDiffExt = "ForwardDiff" - SciMLBaseMLStyleExt = "MLStyle" SciMLBaseMakieExt = "Makie" SciMLBaseMeasurementsExt = "Measurements" SciMLBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" @@ -2210,7 +2215,6 @@ version = "2.144.2" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - MLStyle = "d8e11817-5142-5d16-987a-aa16d5891078" Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" @@ -2231,9 +2235,9 @@ version = "0.1.3" [[deps.SciMLJacobianOperators]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DifferentiationInterface", "FastClosures", "LinearAlgebra", "SciMLBase", "SciMLOperators"] -git-tree-sha1 = "e96d5e96debf7f80a50d0b976a13dea556ccfd3a" +git-tree-sha1 = "7156a5b51cba1bea33a82a036939ead4131f92bc" uuid = "19f34311-ddf3-4b8b-af20-060888a46c0e" -version = "0.1.12" +version = "0.1.13" [[deps.SciMLLogging]] deps = ["Logging", "LoggingExtras", "Preferences"] @@ -2249,9 +2253,9 @@ version = "1.9.1" [[deps.SciMLOperators]] deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra"] -git-tree-sha1 = "794c760e6aafe9f40dcd7dd30526ea33f0adc8b7" +git-tree-sha1 = "0e34162268883db01c04f988895a80d0659071bb" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "1.15.1" +version = "1.17.0" weakdeps = ["SparseArrays", "StaticArraysCore"] [deps.SciMLOperators.extensions] @@ -2277,6 +2281,7 @@ version = "1.3.0" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" +version = "1.11.0" [[deps.Setfield]] deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] @@ -2297,9 +2302,9 @@ version = "1.2.0" [[deps.SimpleNonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "744c3f0fb186ad28376199c1e72ca39d0c614b5d" +git-tree-sha1 = "d688de789b7e643326caf9a1051376dadbcd8873" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "2.11.0" +version = "2.11.1" [deps.SimpleNonlinearSolve.extensions] SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" @@ -2319,6 +2324,7 @@ version = "0.9.5" [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" +version = "1.11.0" [[deps.SortingAlgorithms]] deps = ["DataStructures"] @@ -2329,7 +2335,7 @@ version = "1.2.2" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -version = "1.10.0" +version = "1.11.0" [[deps.SparseBandedMatrices]] deps = ["LinearAlgebra", "PrecompileTools"] @@ -2339,44 +2345,55 @@ version = "1.3.0" [[deps.SparseMatrixColorings]] deps = ["ADTypes", "DocStringExtensions", "LinearAlgebra", "PrecompileTools", "Random", "SparseArrays"] -git-tree-sha1 = "6ed48d9a3b22417c765dc273ae3e1e4de035e7c8" +git-tree-sha1 = "f63d76c7b7c329cf11badd564fd8ba877b09c3fe" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.4.23" +version = "0.4.27" [deps.SparseMatrixColorings.extensions] - SparseMatrixColoringsCUDAExt = "CUDA" + SparseMatrixColoringsCUDAExt = ["CUDA", "cuSPARSE"] SparseMatrixColoringsCliqueTreesExt = "CliqueTrees" SparseMatrixColoringsColorsExt = "Colors" + SparseMatrixColoringsGPUArraysExt = "GPUArrays" SparseMatrixColoringsJuMPExt = ["JuMP", "MathOptInterface"] [deps.SparseMatrixColorings.weakdeps] CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" + GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" JuMP = "4076af6c-e467-56ae-b986-b466b2749572" MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" + cuSPARSE = "b26da814-b3bc-49ef-b0ee-c816305aa060" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "5acc6a41b3082920f79ca3c759acbcecf18a8d78" +git-tree-sha1 = "2700b235561b0335d5bef7097a111dc513b8655e" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.7.1" -weakdeps = ["ChainRulesCore"] +version = "2.7.2" [deps.SpecialFunctions.extensions] SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" + [deps.SpecialFunctions.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + [[deps.StableRNGs]] deps = ["Random"] git-tree-sha1 = "4f96c596b8c8258cc7d3b19797854d368f243ddc" uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" version = "1.0.4" +[[deps.StarAlgebras]] +deps = ["LinearAlgebra", "MutableArithmetics", "SparseArrays"] +git-tree-sha1 = "235b1f9d287bbf34083b3d0829343a7942c0ad1c" +uuid = "0c0c59c1-dc5f-42e9-9a8b-b5dc384a6cd1" +version = "0.3.0" + [[deps.StateSelection]] deps = ["BipartiteGraphs", "DocStringExtensions", "FindFirstFunctions", "Graphs", "LinearAlgebra", "OrderedCollections", "Setfield", "SparseArrays"] -git-tree-sha1 = "2482a0ee31419c63be997d8added773d412c42d2" +git-tree-sha1 = "824641f6d414f0885200e034e3853c3c2f61ac43" uuid = "64909d44-ed92-46a8-bbd9-f047dfbdc84b" -version = "1.3.0" +version = "1.9.2" [deps.StateSelection.extensions] StateSelectionDeepDiffsExt = "DeepDiffs" @@ -2386,15 +2403,15 @@ version = "1.3.0" [[deps.Static]] deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools", "SciMLPublic"] -git-tree-sha1 = "49440414711eddc7227724ae6e570c7d5559a086" +git-tree-sha1 = "bb072715f158b59ad8819ff80da5ffa90cce6ceb" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.3.1" +version = "1.4.0" [[deps.StaticArrayInterface]] deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "SciMLPublic", "Static"] -git-tree-sha1 = "aa1ea41b3d45ac449d10477f65e2b40e3197a0d2" +git-tree-sha1 = "2a635e15d5035c53b345077c947f31ff91744078" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.9.0" +version = "1.10.0" weakdeps = ["OffsetArrays", "StaticArrays"] [deps.StaticArrayInterface.extensions] @@ -2403,24 +2420,32 @@ weakdeps = ["OffsetArrays", "StaticArrays"] [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "0f529006004a8be48f1be25f3451186579392d47" +git-tree-sha1 = "246a8bb2e6667f832eea063c3a56aef96429a3db" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.17" -weakdeps = ["ChainRulesCore", "Statistics"] +version = "1.9.18" [deps.StaticArrays.extensions] StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" + [deps.StaticArrays.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" + [[deps.StaticArraysCore]] git-tree-sha1 = "6ab403037779dae8c514bad259f32a447262455a" uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" version = "1.4.4" [[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] +deps = ["LinearAlgebra"] +git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.10.0" +version = "1.11.1" +weakdeps = ["SparseArrays"] + + [deps.Statistics.extensions] + SparseArraysExt = ["SparseArrays"] [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -2439,17 +2464,20 @@ deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Re git-tree-sha1 = "91f091a8716a6bb38417a6e6f274602a19aaa685" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" version = "1.5.2" -weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] StatsFunsChainRulesCoreExt = "ChainRulesCore" StatsFunsInverseFunctionsExt = "InverseFunctions" + [deps.StatsFuns.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" + [[deps.StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "83151ba8065a73f53ca2ae98bc7274d817aa30f2" +git-tree-sha1 = "5316097111523c9a970596a5b33cfea5f92e8581" uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.5.8" +version = "0.5.9" [[deps.StringEncodings]] deps = ["Libiconv_jll"] @@ -2459,9 +2487,9 @@ version = "0.3.7" [[deps.StructArrays]] deps = ["ConstructionBase", "DataAPI", "Tables"] -git-tree-sha1 = "a2c37d815bf00575332b7bd0389f771cb7987214" +git-tree-sha1 = "ad8002667372439f2e3611cfd14097e03fa4bccd" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.7.2" +version = "0.7.3" [deps.StructArrays.extensions] StructArraysAdaptExt = "Adapt" @@ -2478,26 +2506,30 @@ version = "0.7.2" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" + [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse32_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "94fcd6e398534febe67795e7df45c76aa3c34851" +deps = ["Artifacts", "JLLWrappers", "Libdl", "libblastrampoline_jll"] +git-tree-sha1 = "1d43a4874b879f381b8a3a978f0ebe837cfd0922" uuid = "ca45d3f4-326b-53b0-9957-23b75aacb3f2" -version = "5.10.1+0" +version = "7.12.1+0" [[deps.SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "7.2.1+1" +version = "7.7.0+0" [[deps.Sundials]] -deps = ["Accessors", "ArrayInterface", "CEnum", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "LinearSolve", "Logging", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SparseArrays", "Sundials_jll", "SymbolicIndexingInterface"] -git-tree-sha1 = "2d27edb89b7c555a57b8f22bfde92d6828d11cee" +deps = ["Accessors", "ArrayInterface", "CEnum", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "LinearSolve", "Logging", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLLogging", "SparseArrays", "Sundials_jll", "SymbolicIndexingInterface"] +git-tree-sha1 = "4853f12fa4333ab235d939a6d38b368d35f2f492" uuid = "c3572dad-4567-51f8-b174-8c6c989267f4" -version = "5.1.0" +version = "6.1.0" [[deps.Sundials_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS32_jll", "SuiteSparse32_jll"] @@ -2505,16 +2537,6 @@ git-tree-sha1 = "a872f379c836e9cb5734485ca0681b192a59b98b" uuid = "fb77eaff-e24c-56d4-86b1-d163f2edb164" version = "7.5.0+0" -[[deps.SymbolicCompilerPasses]] -deps = ["LinearAlgebra", "PreallocationTools", "StaticArrays", "SymbolicUtils"] -git-tree-sha1 = "b0d41c9e1ab4f81a6e5800bb7d2534330071d520" -uuid = "3384d301-0fbe-4b40-9ae0-b0e68bedb069" -version = "0.1.2" -weakdeps = ["LinearSolve"] - - [deps.SymbolicCompilerPasses.extensions] - SCPLinearSolveExt = ["LinearSolve"] - [[deps.SymbolicIndexingInterface]] deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] git-tree-sha1 = "94c58884e013efff548002e8dc2fdd1cb74dfce5" @@ -2534,10 +2556,10 @@ uuid = "19f23fe9-fdab-4a78-91af-e7b7767979c3" version = "1.1.0" [[deps.SymbolicUtils]] -deps = ["AbstractTrees", "ArrayInterface", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "EnumX", "ExproniconLite", "LinearAlgebra", "MacroTools", "Moshi", "MultivariatePolynomials", "MutableArithmetics", "NaNMath", "PrecompileTools", "ReadOnlyArrays", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "TaskLocalValues", "TermInterface", "WeakCacheSets"] -git-tree-sha1 = "d1c1a41cd8b7ed85559a87ac09b9b0925818aaaa" +deps = ["AbstractTrees", "ArrayInterface", "Combinatorics", "ConstructionBase", "DataStructures", "Dictionaries", "DocStringExtensions", "DynamicPolynomials", "EnumX", "ExproniconLite", "Graphs", "LinearAlgebra", "MacroTools", "Moshi", "MultivariatePolynomials", "MutableArithmetics", "NaNMath", "PrecompileTools", "ReadOnlyArrays", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "TaskLocalValues", "TermInterface", "WeakCacheSets"] +git-tree-sha1 = "ae8741c34009171ee8e46d5c209cf0a15c469928" uuid = "d1185830-fcd6-423d-90d6-eec64667417b" -version = "4.18.5" +version = "4.26.0" [deps.SymbolicUtils.extensions] SymbolicUtilsChainRulesCoreExt = "ChainRulesCore" @@ -2553,9 +2575,9 @@ version = "4.18.5" [[deps.Symbolics]] deps = ["ADTypes", "AbstractPlutoDingetjes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "Moshi", "MultivariatePolynomials", "MutableArithmetics", "NaNMath", "PrecompileTools", "Preferences", "Primes", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLPublic", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] -git-tree-sha1 = "02687bc18b509620a6472cc90f65da9d3f885a2f" +git-tree-sha1 = "85bb4be51a7e90e531b1faa926b9497f436ca535" uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7" -version = "7.15.3" +version = "7.21.0" [deps.Symbolics.extensions] SymbolicsD3TreesExt = "D3Trees" @@ -2625,6 +2647,7 @@ version = "2.0.0" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" +version = "1.11.0" [[deps.ThreadingUtilities]] deps = ["ManualMemory"] @@ -2669,6 +2692,7 @@ version = "1.6.1" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +version = "1.11.0" [[deps.UnPack]] git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" @@ -2677,6 +2701,7 @@ version = "1.0.2" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +version = "1.11.0" [[deps.UnicodeFun]] deps = ["REPL"] @@ -2735,9 +2760,9 @@ version = "0.10.12" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "9cce64c0fdd1960b597ba7ecda2950b5ed957438" +git-tree-sha1 = "b29c22e245d092b8b4e8d3c09ad7baa586d9f573" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.8.2+0" +version = "5.8.3+0" [[deps.Xorg_libICE_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2813,9 +2838,9 @@ version = "0.9.12+0" [[deps.Xorg_libpciaccess_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "4909eb8f1cbf6bd4b1c30dd18b2ead9019ef2fad" +git-tree-sha1 = "58972370b81423fc546c56a60ed1a009450177c3" uuid = "a65dc6b1-eb27-53a1-bb3e-dea574b5389e" -version = "0.18.1+0" +version = "0.19.0+0" [[deps.Xorg_libxcb_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXau_jll", "Xorg_libXdmcp_jll"] @@ -2873,9 +2898,9 @@ version = "1.4.7+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "00af7ebdc563c9217ecc67776d1bbf037dbcebf4" +git-tree-sha1 = "429722587208f02b1cecbddcd20133df2f1ed796" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.44.0+0" +version = "2.47.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2926,9 +2951,9 @@ version = "0.61.1+0" [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" +git-tree-sha1 = "850b06095ee71f0135d644ffd8a52850699581ed" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.13.1+0" +version = "3.13.3+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] @@ -2973,9 +2998,9 @@ version = "1.28.1+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" +git-tree-sha1 = "e51150d5ab85cee6fc36726850f0e627ad2e4aba" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.55+0" +version = "1.6.58+0" [[deps.libsodium_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -3004,7 +3029,7 @@ version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.52.0+1" +version = "1.59.0+0" [[deps.oneTBB_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] @@ -3015,7 +3040,7 @@ version = "2022.0.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.6.1+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] diff --git a/benchmarks/ComplicatedPDE/Project.toml b/benchmarks/ComplicatedPDE/Project.toml index 7148e8d60..0c4c9ed38 100644 --- a/benchmarks/ComplicatedPDE/Project.toml +++ b/benchmarks/ComplicatedPDE/Project.toml @@ -8,27 +8,45 @@ ModelingToolkit = "961ee093-0014-501f-94e3-6117800e7a78" NonlinearSolve = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" ODEInterfaceDiffEq = "09606e27-ecf5-54fc-bb29-004bd9f985bf" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" +OrdinaryDiffEqBDF = "6ad6398a-0878-4a85-9266-38940aa047c8" +OrdinaryDiffEqExponentialRK = "e0540318-69ee-4070-8777-9e2de6de23de" +OrdinaryDiffEqExtrapolation = "becaefa8-8ca2-5cf9-886d-c06f3d2bd2c4" +OrdinaryDiffEqFIRK = "5960d6e9-dd7a-4743-88e7-cf307b64f125" +OrdinaryDiffEqLowOrderRK = "1344f307-1e59-4825-a18e-ace9aa3fa4c6" +OrdinaryDiffEqRosenbrock = "43230ef6-c299-4910-a778-202eb28ce4ce" +OrdinaryDiffEqSDIRK = "2d112036-d095-4a1e-ab9a-08536f3ecdbf" +OrdinaryDiffEqStabilizedRK = "358294b1-0aab-51c3-aafe-ad5ab194a2ad" Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" RecursiveFactorization = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" SciMLBenchmarks = "31c91b34-3c75-11e9-0341-95557aab0344" +SciMLLogging = "a6db7da4-7206-11f0-1eab-35f2a5dbe1d1" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StableRNGs = "860ef19b-820b-49d6-a774-d7a799459cd3" Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" [compat] -DiffEqDevTools = "2" +DiffEqDevTools = "3" GaussianRandomFields = "2" IJulia = "1" LSODA = "0.7" LinearSolve = "3" ModelingToolkit = "11" NonlinearSolve = "4.3.0" -ODEInterfaceDiffEq = "3" -OrdinaryDiffEq = "6" +ODEInterfaceDiffEq = "4" +OrdinaryDiffEq = "7" +OrdinaryDiffEqBDF = "2" +OrdinaryDiffEqExponentialRK = "2" +OrdinaryDiffEqExtrapolation = "2" +OrdinaryDiffEqFIRK = "2" +OrdinaryDiffEqLowOrderRK = "2" +OrdinaryDiffEqRosenbrock = "2" +OrdinaryDiffEqSDIRK = "2" +OrdinaryDiffEqStabilizedRK = "2" Plots = "1" RecursiveFactorization = "0.2.23" SciMLBenchmarks = "0.1" +SciMLLogging = "1, 2" StableRNGs = "1" -Sundials = "5" +Sundials = "6" Symbolics = "7" diff --git a/benchmarks/ComplicatedPDE/SpringBlockNonLinearResistance.jmd b/benchmarks/ComplicatedPDE/SpringBlockNonLinearResistance.jmd index 3d5a21a12..3d2ff8fb5 100644 --- a/benchmarks/ComplicatedPDE/SpringBlockNonLinearResistance.jmd +++ b/benchmarks/ComplicatedPDE/SpringBlockNonLinearResistance.jmd @@ -7,6 +7,7 @@ see https://discourse.julialang.org/t/boundserror-on-odeproblem-accelerated-with ```julia using OrdinaryDiffEq, Symbolics, ModelingToolkit, Sundials, LinearSolve, SparseArrays +using OrdinaryDiffEqRosenbrock, OrdinaryDiffEqSDIRK using NonlinearSolve using GaussianRandomFields using StableRNGs diff --git a/benchmarks/DAE/ChemicalAkzoNobel.jmd b/benchmarks/DAE/ChemicalAkzoNobel.jmd index 8aa5a042b..0bf246afc 100644 --- a/benchmarks/DAE/ChemicalAkzoNobel.jmd +++ b/benchmarks/DAE/ChemicalAkzoNobel.jmd @@ -6,6 +6,7 @@ author: Chris Rackauckas ```julia using OrdinaryDiffEq, DiffEqDevTools, Sundials, ModelingToolkit, ODEInterfaceDiffEq, Plots, DASSL, DASKR +using OrdinaryDiffEqBDF, OrdinaryDiffEqFIRK, OrdinaryDiffEqRosenbrock, OrdinaryDiffEqSDIRK using LinearAlgebra using ModelingToolkit: t_nounits as t, D_nounits as D diff --git a/benchmarks/DAE/LinearDAE.jmd b/benchmarks/DAE/LinearDAE.jmd index 859d1501f..3e00cc87a 100644 --- a/benchmarks/DAE/LinearDAE.jmd +++ b/benchmarks/DAE/LinearDAE.jmd @@ -31,6 +31,7 @@ Each DAE is defined using both ModelingToolkit symbolic form and static array ma ```julia using OrdinaryDiffEq, DiffEqDevTools, Sundials, ModelingToolkit, ODEInterfaceDiffEq, Plots, DASSL, DASKR, StaticArrays +using OrdinaryDiffEqBDF, OrdinaryDiffEqRosenbrock using LinearAlgebra, SparseArrays using ModelingToolkit: t_nounits as t, D_nounits as D const SA = StaticArrays.SA diff --git a/benchmarks/DAE/Manifest.toml b/benchmarks/DAE/Manifest.toml index 8bba42a86..22c911829 100644 --- a/benchmarks/DAE/Manifest.toml +++ b/benchmarks/DAE/Manifest.toml @@ -1,20 +1,24 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.11" +julia_version = "1.11.9" manifest_format = "2.0" -project_hash = "7ce2b7d876ff5d59d2e9152af8e9d8fd5cd2b6f1" +project_hash = "26f5d905ccc09d5c45fc3161e12d6a51f7b219e8" [[deps.ADTypes]] -git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" +git-tree-sha1 = "bbc22a9a08a0ef6460041086d8a7b27940ed4ffd" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.21.0" -weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] +version = "1.22.0" [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" ADTypesConstructionBaseExt = "ConstructionBase" ADTypesEnzymeCoreExt = "EnzymeCore" + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + [[deps.AbstractPlutoDingetjes]] deps = ["Pkg"] git-tree-sha1 = "6e1d2a35f2f90a4bc7c2ed98079b2ba09c35b83a" @@ -28,9 +32,9 @@ version = "0.4.5" [[deps.Accessors]] deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] -git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +git-tree-sha1 = "2eeb2c9bef11013efc6f8f97f32ee59b146b09fb" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.43" +version = "0.1.44" [deps.Accessors.extensions] AxisKeysExt = "AxisKeys" @@ -52,9 +56,9 @@ version = "0.1.43" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "35ea197a51ce46fcd01c4a44befce0578a1aaeca" +git-tree-sha1 = "0761717147821d696c9470a7a86364b2fbd22fd8" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.5.0" +version = "4.5.2" weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] @@ -69,7 +73,7 @@ version = "1.1.3" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.ArnoldiMethod]] deps = ["LinearAlgebra", "Random", "StaticArrays"] @@ -79,9 +83,9 @@ version = "0.4.0" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "78b3a7a536b4b0a747a0f296ea77091ca0a9f9a3" +git-tree-sha1 = "54f895554d05c83e3dd59f6a396671dae8999573" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.23.0" +version = "7.24.0" [deps.ArrayInterface.extensions] ArrayInterfaceAMDGPUExt = "AMDGPU" @@ -125,6 +129,7 @@ weakdeps = ["SparseArrays"] [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +version = "1.11.0" [[deps.BandedMatrices]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] @@ -142,6 +147,7 @@ version = "1.11.0" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Bijections]] git-tree-sha1 = "a2d308fcd4c2fb90e943cf9cd2fbfa9c32b69733" @@ -163,12 +169,6 @@ git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" version = "0.1.9" -[[deps.BitTwiddlingConvenienceFunctions]] -deps = ["Static"] -git-tree-sha1 = "f21cfd4950cb9f0587d5067e69405ad2acd27b87" -uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" -version = "0.1.6" - [[deps.BlockArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] git-tree-sha1 = "0f606a9894e2bcda541ceb82a91a13c5d450ed97" @@ -182,15 +182,18 @@ weakdeps = ["Adapt", "BandedMatrices"] [[deps.BracketingNonlinearSolve]] deps = ["CommonSolve", "ConcreteStructs", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "4999dff8efd76814f6662519b985aeda975a1924" +git-tree-sha1 = "7ad7171d693ae5552ac43862e7f6b61df4471c2b" uuid = "70df07ce-3d50-431d-a3e7-ca6ddb60ac1e" -version = "1.11.0" -weakdeps = ["ChainRulesCore", "ForwardDiff"] +version = "1.12.1" [deps.BracketingNonlinearSolve.extensions] BracketingNonlinearSolveChainRulesCoreExt = ["ChainRulesCore", "ForwardDiff"] BracketingNonlinearSolveForwardDiffExt = "ForwardDiff" + [deps.BracketingNonlinearSolve.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" @@ -202,33 +205,11 @@ git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" version = "0.5.0" -[[deps.CPUSummary]] -deps = ["CpuId", "IfElse", "PrecompileTools", "Preferences", "Static"] -git-tree-sha1 = "f3a21d7fc84ba618a779d1ed2fcca2e682865bab" -uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" -version = "0.2.7" - [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d0efe2c6fdcdaa1c161d206aa8b933788397ec71" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.5+1" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.26.0" -weakdeps = ["SparseArrays"] - - [deps.ChainRulesCore.extensions] - ChainRulesCoreSparseArraysExt = "SparseArrays" - -[[deps.CloseOpenIntervals]] -deps = ["Static", "StaticArrayInterface"] -git-tree-sha1 = "05ba0d07cd4fd8b7a39541e31a7b0254704ea581" -uuid = "fb6a15b2-703c-40df-9091-08a04967cfa9" -version = "0.1.13" +version = "1.18.6+0" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] @@ -247,13 +228,11 @@ deps = ["FixedPointNumbers", "Random"] git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" version = "0.12.1" +weakdeps = ["StyledStrings"] [deps.ColorTypes.extensions] StyledStringsExt = "StyledStrings" - [deps.ColorTypes.weakdeps] - StyledStrings = "f489334b-da3d-4c2e-b8f0-e476e12c162b" - [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" @@ -353,17 +332,11 @@ git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" version = "0.6.3" -[[deps.CpuId]] -deps = ["Markdown"] -git-tree-sha1 = "fcbb72b032692610bfbdb15018ac16a36cf2e406" -uuid = "adafc99b-e345-5852-983c-f28acb93d879" -version = "0.3.1" - [[deps.DASKR]] -deps = ["Compat", "DASKR_jll", "DiffEqBase", "Libdl", "Reexport"] -git-tree-sha1 = "49d1225a3f95f4c72f9f8c21fa7a8e9bde29687d" +deps = ["Compat", "DASKR_jll", "DiffEqBase", "Libdl", "PrecompileTools", "Reexport", "SciMLBase", "SciMLLogging"] +git-tree-sha1 = "d61966b09861d5174cb26e4904af66f7fd3c230a" uuid = "165a45c3-f624-5814-8e85-3bdf39a7becd" -version = "2.9.1" +version = "3.1.0" [[deps.DASKR_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -372,10 +345,10 @@ uuid = "655fdf9c-4522-5e7e-b537-e46a52300ea6" version = "1.0.1+0" [[deps.DASSL]] -deps = ["ArrayInterface", "DiffEqBase", "LinearAlgebra", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "51cccf502959648bd930a1729a8458638ed9e8de" +deps = ["ArrayInterface", "DiffEqBase", "LinearAlgebra", "PrecompileTools", "Reexport", "SciMLBase", "SciMLLogging", "SymbolicIndexingInterface"] +git-tree-sha1 = "764134026a7a21d4d52bed3c46e8f353d409e194" uuid = "e993076c-0cfd-5d6b-a1ac-36489fdf7917" -version = "2.8.0" +version = "3.0.0" [[deps.DataAPI]] git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" @@ -384,9 +357,9 @@ version = "1.16.0" [[deps.DataStructures]] deps = ["OrderedCollections"] -git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" +git-tree-sha1 = "e86f4a2805f7f19bec5129bc9150c38208e5dc23" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.19.3" +version = "0.19.4" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -396,6 +369,7 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" [[deps.Dbus_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] @@ -409,11 +383,17 @@ git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" version = "1.9.1" +[[deps.Dictionaries]] +deps = ["Indexing", "Random", "Serialization"] +git-tree-sha1 = "a55766a9c8f66cf19ffcdbdb1444e249bb4ace33" +uuid = "85a47980-9c8c-11e8-2b9f-f7ca1fa99fb4" +version = "0.4.6" + [[deps.DiffEqBase]] -deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "96e0d3006aac4a322691de81f0baedd38b62a0c4" +deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "2d7ca58e6ce2d1f7a435773d73d111741e283070" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.211.0" +version = "7.1.0" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" @@ -454,9 +434,9 @@ version = "6.211.0" [[deps.DiffEqCallbacks]] deps = ["ConcreteStructs", "DataStructures", "DiffEqBase", "DifferentiationInterface", "LinearAlgebra", "Markdown", "PrecompileTools", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "f17b863c2d5d496363fe36c8d8535cc6a33c9952" +git-tree-sha1 = "51f445c25b80c26c83c61520cde214adf8c05227" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "4.12.0" +version = "4.17.0" [deps.DiffEqCallbacks.extensions] DiffEqCallbacksFunctorsExt = "Functors" @@ -466,15 +446,15 @@ version = "4.12.0" [[deps.DiffEqDevTools]] deps = ["DiffEqBase", "DiffEqNoiseProcess", "Distributed", "LinearAlgebra", "Logging", "NLsolve", "RecipesBase", "RecursiveArrayTools", "RootedTrees", "SciMLBase", "Statistics", "StructArrays"] -git-tree-sha1 = "5ff2f5b04b9504e1bc6aa22d0787091738613148" +git-tree-sha1 = "cc290a2fdad4d332ba6a88953eaf5800687ccd49" uuid = "f3b72e0c-5b89-59e1-b016-84e28bfd966d" -version = "2.49.0" +version = "3.0.0" [[deps.DiffEqNoiseProcess]] deps = ["CommonSolve", "DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "PoissonRandom", "QuadGK", "Random", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "b879ca516034469f28becdf01f85f56b45f518b9" +git-tree-sha1 = "5b5fe6eb9e994ff0de4e84fe149b03c706fd6403" uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" -version = "5.27.0" +version = "5.31.0" [deps.DiffEqNoiseProcess.extensions] DiffEqNoiseProcessOptimExt = "Optim" @@ -498,9 +478,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +git-tree-sha1 = "d0250552e42bf7cc36479fd38a6e30004c9e8c2b" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.7.16" +version = "0.7.17" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -510,7 +490,7 @@ version = "0.7.16" DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] - DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGPUArraysCoreExt = ["GPUArraysCore", "Adapt"] DifferentiationInterfaceGTPSAExt = "GTPSA" DifferentiationInterfaceMooncakeExt = "Mooncake" DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] @@ -524,6 +504,7 @@ version = "0.7.16" DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] [deps.DifferentiationInterface.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" @@ -551,21 +532,25 @@ deps = ["LinearAlgebra", "Statistics", "StatsAPI"] git-tree-sha1 = "c7e3a542b999843086e2f29dac96a618c105be1d" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" version = "0.10.12" -weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] DistancesChainRulesCoreExt = "ChainRulesCore" DistancesSparseArraysExt = "SparseArrays" + [deps.Distances.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" +git-tree-sha1 = "e421c1938fafab0165b04dc1a9dbe2a26272952c" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.123" +version = "0.25.125" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -583,10 +568,10 @@ uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" version = "0.9.5" [[deps.DomainSets]] -deps = ["CompositeTypes", "IntervalSets", "LinearAlgebra", "StaticArrays"] -git-tree-sha1 = "c249d86e97a7e8398ce2068dce4c078a1c3464de" +deps = ["CompositeTypes", "FunctionMaps", "IntervalSets", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "4599e0cd684f3ff6cbbab73c77553a3d01a8d74d" uuid = "5b8099bc-c8ec-5219-889f-1d9e522a28bf" -version = "0.7.16" +version = "0.7.18" [deps.DomainSets.extensions] DomainSetsMakieExt = "Makie" @@ -602,10 +587,10 @@ uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.6.0" [[deps.DynamicPolynomials]] -deps = ["Future", "LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Reexport", "Test"] -git-tree-sha1 = "3f50fa86c968fc1a9e006c07b6bc40ccbb1b704d" +deps = ["LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Reexport", "StarAlgebras", "Test"] +git-tree-sha1 = "5bfabc3827dfdd164359bad6800c115a81280c00" uuid = "7c1d4256-1411-5781-91ec-d7bc3513ac07" -version = "0.6.4" +version = "0.6.6" [[deps.EnumX]] git-tree-sha1 = "c49898e8438c828577f04b92fc9368c388ac783c" @@ -613,15 +598,18 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.7" [[deps.EnzymeCore]] -git-tree-sha1 = "990991b8aa76d17693a98e3a915ac7aa49f08d1a" +git-tree-sha1 = "c6ee69ee502060982d12dbaaf3d8fcb4e835a0d1" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.8.18" -weakdeps = ["Adapt", "ChainRulesCore"] +version = "0.8.20" [deps.EnzymeCore.extensions] AdaptExt = "Adapt" EnzymeCoreChainRulesCoreExt = "ChainRulesCore" + [deps.EnzymeCore.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + [[deps.EpollShim_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "8a4be429317c42cfae6a7fc03c31bad1970c310d" @@ -636,19 +624,9 @@ version = "0.1.11" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "27af30de8b5445644e8ffe3bcb0d72049c089cf1" +git-tree-sha1 = "8f05e9a2e7c2e3eb524102bb2926c5743c07fbe1" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.7.3+0" - -[[deps.ExponentialUtilities]] -deps = ["Adapt", "ArrayInterface", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "PrecompileTools", "Printf", "SparseArrays", "libblastrampoline_jll"] -git-tree-sha1 = "cc294ead6a85e975a8519dd4a0a6cb294eeb18d1" -uuid = "d4d017d3-3776-5f7e-afef-a10c40355c18" -version = "1.30.0" -weakdeps = ["StaticArrays"] - - [deps.ExponentialUtilities.extensions] - ExponentialUtilitiesStaticArraysExt = "StaticArrays" +version = "2.8.0+0" [[deps.ExprTools]] git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" @@ -668,15 +646,23 @@ version = "0.4.5" [[deps.FFMPEG_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libva_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "66381d7059b5f3f6162f28831854008040a4e905" +git-tree-sha1 = "cac41ca6b2d399adfc95e51240566f8a60a80806" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "8.0.1+1" +version = "8.1.0+0" [[deps.FastBroadcast]] -deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "ab1b34570bcdf272899062e1a56285a53ecaae08" +deps = ["ArrayInterface", "LinearAlgebra"] +git-tree-sha1 = "7feeed2c9a7fa272189a5561bebf0c4ccaedb6ec" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.3.5" +version = "1.3.2" + + [deps.FastBroadcast.extensions] + FastBroadcastPolyesterExt = "Polyester" + FastBroadcastStaticExt = "Static" + + [deps.FastBroadcast.weakdeps] + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" + Static = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" @@ -714,6 +700,7 @@ version = "1.3.1" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" +version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] @@ -736,9 +723,9 @@ version = "1.8.0" [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "9340ca07ca27093ff68418b7558ca37b05f8aeb1" +git-tree-sha1 = "f7017a4f337f8df189fcce98e32b67a1298a2115" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.29.0" +version = "2.31.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -771,9 +758,9 @@ version = "1.3.7" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "eef4c86803f47dcb61e9b8790ecaa96956fdd8ae" +git-tree-sha1 = "cddeab6487248a39dae1a960fff0ac17b2a28888" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "1.3.2" +version = "1.3.3" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -781,9 +768,9 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "2c5512e11c791d1baed2049c5652441b28fc6a31" +git-tree-sha1 = "70329abc09b886fd2c5d94ad2d9527639c421e3e" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.4+0" +version = "2.14.3+1" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -791,26 +778,42 @@ git-tree-sha1 = "7a214fdac5ed5f59a22c2d9a885a16da1c74bbc7" uuid = "559328eb-81f9-559d-9380-de523a88c83c" version = "1.0.17+0" +[[deps.FunctionMaps]] +deps = ["CompositeTypes", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "31bd99a57edf98990d1c21486032963955450e8d" +uuid = "a85aefff-f8ca-4649-a888-c8e5398bc76c" +version = "0.1.2" + [[deps.FunctionWrappers]] git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" version = "1.1.3" [[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +deps = ["FunctionWrappers", "PrecompileTools", "TruncatedStacktraces"] +git-tree-sha1 = "c1b0c3a166a2a393257aa888787ca817532e14ce" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" +version = "1.8.0" + + [deps.FunctionWrappersWrappers.extensions] + FunctionWrappersWrappersEnzymeExt = ["Enzyme", "EnzymeCore"] + FunctionWrappersWrappersMooncakeExt = "Mooncake" + + [deps.FunctionWrappersWrappers.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" +version = "1.11.0" [[deps.GLFW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] -git-tree-sha1 = "b7bfd56fa66616138dfe5237da4dc13bbd83c67f" +git-tree-sha1 = "9e0fb9e54594c47f278d75063980e43066e26e20" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.4.1+0" +version = "3.4.1+1" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -834,12 +837,6 @@ git-tree-sha1 = "be8a1b8065959e24fdc1b51402f39f3b6f0f6653" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" version = "0.73.24+0" -[[deps.GenericSchur]] -deps = ["LinearAlgebra", "Printf"] -git-tree-sha1 = "a694e2a57394e409f7a11ee0977362a9fafcb8c7" -uuid = "c145ed77-6b09-5dd9-b285-bf645a82121e" -version = "0.5.6" - [[deps.GettextRuntime_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll"] git-tree-sha1 = "45288942190db7c5f760f59c04495064eedf9340" @@ -866,9 +863,9 @@ version = "3.7.0+0" [[deps.Git_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "dc34a3e3d96b4ed305b641e626dc14c12b7824b8" +git-tree-sha1 = "0dd4cfb426924210c8f42742751cbde74b27bfa3" uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb" -version = "2.53.0+0" +version = "2.54.0+0" [[deps.Glib_jll]] deps = ["Artifacts", "GettextRuntime_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] @@ -938,16 +935,16 @@ version = "1.34.4" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" Revise = "295af30f-e4ad-537b-8983-00126c2a3abe" -[[deps.IfElse]] -git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" -uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" -version = "0.1.1" - [[deps.ImplicitDiscreteSolve]] deps = ["ConcreteStructs", "DiffEqBase", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "OrdinaryDiffEqCore", "Reexport", "SciMLBase", "SymbolicIndexingInterface"] -git-tree-sha1 = "80e108544e96389133758dd014b503d8df3cedb8" +git-tree-sha1 = "dc9f649cbcdd4f2b402d7cbbd5cf61517b45ad5a" uuid = "3263718b-31ed-49cf-8a0f-35a466e8af96" -version = "1.8.0" +version = "2.0.0" + +[[deps.Indexing]] +git-tree-sha1 = "ce1566720fd6b19ff3411404d4b977acd4814f9f" +uuid = "313cdc1a-70c2-5d6a-ae34-0150d3930a38" +version = "1.1.1" [[deps.Inflate]] git-tree-sha1 = "d1b1b796e47d94588b3757fe84fbf65a5ec4a80d" @@ -968,11 +965,12 @@ version = "2025.2.0+0" [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" +version = "1.11.0" [[deps.IntervalSets]] -git-tree-sha1 = "d966f85b3b7a8e49d034d27a189e9a4874b4391a" +git-tree-sha1 = "79d6bd28c8d9bccc2229784f1bd637689b256377" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.13" +version = "0.7.14" weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] @@ -1026,15 +1024,15 @@ version = "0.2.1" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "b6893345fd6658c8e475d40155789f4860ac3b21" +git-tree-sha1 = "c0c9b76f3520863909825cbecdef58cd63de705a" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.1.4+0" +version = "3.1.5+0" [[deps.JumpProcesses]] deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "PoissonRandom", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "SymbolicIndexingInterface"] -git-tree-sha1 = "1d9e36e530080a9f097de67c2576c3f83d418dd0" +git-tree-sha1 = "2a8e5b9b90ef0da05f61904d0a39a7b1c0a83310" uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" -version = "9.23.2" +version = "9.28.0" [deps.JumpProcesses.extensions] JumpProcessesKernelAbstractionsExt = ["Adapt", "KernelAbstractions"] @@ -1042,7 +1040,6 @@ version = "9.23.2" [deps.JumpProcesses.weakdeps] Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" - FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" OrdinaryDiffEqCore = "bbf590c4-e513-4bbe-9b18-05decba2e5d8" @@ -1060,9 +1057,9 @@ version = "3.100.3+0" [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "aaafe88dccbd957a8d82f7d05be9b69172e0cee3" +git-tree-sha1 = "17b94ecafcfa45e8360a4fc9ca6b583b049e4e37" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "4.0.1+0" +version = "4.1.0+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1070,12 +1067,6 @@ git-tree-sha1 = "eb62a3deb62fc6d8822c0c4bef73e4412419c5d8" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" version = "18.1.8+0" -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "1c602b1127f4751facb671441ca72715cc95938a" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.3+0" - [[deps.LaTeXStrings]] git-tree-sha1 = "dda21b8cbd6a6c40d9d02a73230f9d70fed6918c" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" @@ -1099,15 +1090,10 @@ version = "0.16.10" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" tectonic_jll = "d7dd28d6-a5e6-559c-9131-7eb760cdacc5" -[[deps.LayoutPointers]] -deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "a9eaadb366f5493a5654e843864c13d8b107548c" -uuid = "10f19ff3-798f-405d-979b-55457f8fc047" -version = "0.1.17" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" +version = "1.11.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] @@ -1117,16 +1103,17 @@ version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.4.0+0" +version = "8.6.0+0" [[deps.LibGit2]] deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +version = "1.11.0" [[deps.LibGit2_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.6.4+0" +version = "1.7.2+0" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] @@ -1135,6 +1122,7 @@ version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" +version = "1.11.0" [[deps.Libffi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1156,9 +1144,9 @@ version = "1.18.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "97bbca976196f2a1eb9607131cb108c69ec3f8a6" +git-tree-sha1 = "cc3ad4faf30015a3e8094c9b5b7f19e85bdf2386" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] @@ -1168,15 +1156,15 @@ version = "4.7.2+0" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d0205286d9eceadc518742860bf23f703779a3d6" +git-tree-sha1 = "d620582b1f0cbe2c72dd1d5bd195a9ce73370ab1" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.LineSearch]] deps = ["ADTypes", "CommonSolve", "ConcreteStructs", "FastClosures", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "SciMLBase", "SciMLJacobianOperators", "StaticArraysCore"] -git-tree-sha1 = "9f7253c0574b4b585c8909232adb890930da980a" +git-tree-sha1 = "fd58a77c92e7c8f1db25c9839127d52943a49349" uuid = "87fe0de2-c867-4266-b59a-2f0a94fc965b" -version = "0.1.6" +version = "0.1.9" weakdeps = ["LineSearches"] [deps.LineSearch.extensions] @@ -1191,12 +1179,13 @@ version = "7.5.1" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +version = "1.11.0" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "57a7bea58da7de6906f2621294ea35656cb40c5f" +deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] +git-tree-sha1 = "42b5cb44317e89ef75dd841c9c8eba9045bf9ff0" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "3.66.0" +version = "3.75.0" [deps.LinearSolve.extensions] LinearSolveAMDGPUExt = "AMDGPU" @@ -1207,7 +1196,9 @@ version = "3.66.0" LinearSolveCUDAExt = "CUDA" LinearSolveCUDSSExt = "CUDSS" LinearSolveCUSOLVERRFExt = ["CUSOLVERRF", "SparseArrays"] + LinearSolveChainRulesCoreExt = "ChainRulesCore" LinearSolveCliqueTreesExt = ["CliqueTrees", "SparseArrays"] + LinearSolveElementalExt = "Elemental" LinearSolveEnzymeExt = ["EnzymeCore", "SparseArrays"] LinearSolveFastAlmostBandedMatricesExt = "FastAlmostBandedMatrices" LinearSolveFastLapackInterfaceExt = "FastLapackInterface" @@ -1219,7 +1210,9 @@ version = "3.66.0" LinearSolveKrylovKitExt = "KrylovKit" LinearSolveMetalExt = "Metal" LinearSolveMooncakeExt = "Mooncake" + LinearSolvePETScCSRExt = ["PETSc", "SparseArrays", "SparseMatricesCSR"] LinearSolvePETScExt = ["PETSc", "SparseArrays"] + LinearSolvePETScMPIExt = ["PETSc", "PartitionedArrays", "SparseArrays", "SparseMatricesCSR"] LinearSolveParUExt = ["ParU_jll", "SparseArrays"] LinearSolvePardisoExt = ["Pardiso", "SparseArrays"] LinearSolveRecursiveFactorizationExt = "RecursiveFactorization" @@ -1234,7 +1227,9 @@ version = "3.66.0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" CUSOLVERRF = "a8cc9031-bad2-4722-94f5-40deabb4245c" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" + Elemental = "902c3f28-d1ec-5e7e-8399-a24c3845ee38" EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" FastLapackInterface = "29a986be-02c6-4525-aec4-84b980013641" @@ -1250,8 +1245,10 @@ version = "3.66.0" PETSc = "ace2c81b-2b5f-4b1e-a30d-d662738edfe0" ParU_jll = "9e0b026c-e8ce-559c-a2c4-6a3d5c955bc9" Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" + PartitionedArrays = "5a9dfac6-5c52-46f7-8278-5e2210713be9" RecursiveFactorization = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseMatricesCSR = "a0a7dd2c-ebf4-11e9-1f05-cf50bc540ca1" Sparspak = "e56a9233-b9d6-4f03-8d0f-1825330902ac" blis_jll = "6136c539-28a5-5bf0-87cc-b183200dce32" @@ -1273,6 +1270,7 @@ version = "0.3.29" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" +version = "1.11.0" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] @@ -1291,14 +1289,10 @@ git-tree-sha1 = "1e0228a030642014fe5cfe68c2c0a818f9e3f522" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" version = "0.5.16" -[[deps.ManualMemory]] -git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" -uuid = "d125e4d3-2237-4719-b19c-fa641b8a4667" -version = "0.1.8" - [[deps.Markdown]] deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +version = "1.11.0" [[deps.MaybeInplace]] deps = ["ArrayInterface", "LinearAlgebra", "MacroTools"] @@ -1319,7 +1313,7 @@ version = "1.1.10" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.1010+0" +version = "2.28.6+0" [[deps.Measures]] git-tree-sha1 = "b513cedd20d9c914783d8ad83d08120702bf2c77" @@ -1334,12 +1328,13 @@ version = "1.2.0" [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" +version = "1.11.0" [[deps.ModelingToolkit]] -deps = ["ADTypes", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "ConstructionBase", "DataStructures", "DiffEqBase", "DifferentiationInterface", "DocStringExtensions", "FillArrays", "FindFirstFunctions", "ForwardDiff", "Graphs", "InteractiveUtils", "Libdl", "LinearAlgebra", "ModelingToolkitBase", "ModelingToolkitTearing", "Moshi", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "StateSelection", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] -git-tree-sha1 = "8a8425f770317bd9a14200bf57f2462c6ce846d3" +deps = ["ADTypes", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "ConstructionBase", "DataStructures", "DiffEqBase", "DifferentiationInterface", "DocStringExtensions", "FillArrays", "ForwardDiff", "Graphs", "InteractiveUtils", "Libdl", "LinearAlgebra", "ModelingToolkitBase", "ModelingToolkitTearing", "Moshi", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "StateSelection", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] +git-tree-sha1 = "8527fee82ed8dc6934827b447b0555674c3ba1be" uuid = "961ee093-0014-501f-94e3-6117800e7a78" -version = "11.17.0" +version = "11.24.1" [deps.ModelingToolkit.extensions] MTKFMIExt = "FMIImport" @@ -1354,10 +1349,10 @@ version = "11.17.0" OrdinaryDiffEqRosenbrock = "43230ef6-c299-4910-a778-202eb28ce4ce" [[deps.ModelingToolkitBase]] -deps = ["ADTypes", "AbstractTrees", "ArrayInterface", "BandedMatrices", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffRules", "DifferentiationInterface", "DocStringExtensions", "DomainSets", "EnumX", "EnzymeCore", "ExprTools", "FillArrays", "FindFirstFunctions", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "ImplicitDiscreteSolve", "InteractiveUtils", "JumpProcesses", "Libdl", "LinearAlgebra", "Moshi", "NaNMath", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Random", "ReadOnlyDicts", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] -git-tree-sha1 = "0967487a5375f4b51ddc503d7a19f325094d212e" +deps = ["ADTypes", "AbstractTrees", "ArrayInterface", "BandedMatrices", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffRules", "DifferentiationInterface", "DocStringExtensions", "DomainSets", "EnumX", "EnzymeCore", "ExprTools", "FillArrays", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "ImplicitDiscreteSolve", "InteractiveUtils", "JumpProcesses", "Libdl", "LinearAlgebra", "Moshi", "NaNMath", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Random", "ReadOnlyDicts", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] +git-tree-sha1 = "d52da5508ed6c42b4e7c01356287d7114f3e13db" uuid = "7771a370-6774-4173-bd38-47e70ca0b839" -version = "1.24.0" +version = "1.33.1" [deps.ModelingToolkitBase.extensions] MTKBifurcationKitExt = "BifurcationKit" @@ -1387,9 +1382,9 @@ version = "1.24.0" [[deps.ModelingToolkitTearing]] deps = ["BipartiteGraphs", "CommonSolve", "DocStringExtensions", "Graphs", "LinearAlgebra", "ModelingToolkitBase", "Moshi", "OffsetArrays", "OrderedCollections", "SciMLBase", "Setfield", "SparseArrays", "StateSelection", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UUIDs"] -git-tree-sha1 = "85205b6ac778a6acfd6190cb2579214d114f6daf" +git-tree-sha1 = "3ad8028ba31ef212307586416f1b341b5e8d4eb9" uuid = "6bb917b9-1269-42b9-9f7c-b0dca72083ab" -version = "1.9.0" +version = "1.13.3" [[deps.Moshi]] deps = ["ExproniconLite", "Jieko"] @@ -1399,7 +1394,7 @@ version = "0.3.7" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2025.12.2" +version = "2023.12.12" [[deps.MuladdMacro]] git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" @@ -1407,15 +1402,17 @@ uuid = "46d2c3a1-f734-5fdb-9937-b9b9aeba4221" version = "0.2.4" [[deps.MultivariatePolynomials]] -deps = ["DataStructures", "LinearAlgebra", "MutableArithmetics"] -git-tree-sha1 = "139071bb741eeaa3ee7d4109f1299e9282882d79" +deps = ["DataStructures", "LinearAlgebra", "MutableArithmetics", "StarAlgebras"] +git-tree-sha1 = "4838893d9b035c2f6967c0d533350e1755b58a70" uuid = "102ac46a-7ee4-5c85-9060-abc95bfdeaa3" -version = "0.5.14" -weakdeps = ["ChainRulesCore"] +version = "0.5.19" [deps.MultivariatePolynomials.extensions] MultivariatePolynomialsChainRulesCoreExt = "ChainRulesCore" + [deps.MultivariatePolynomials.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + [[deps.Mustache]] deps = ["Printf", "Tables"] git-tree-sha1 = "3cbd5dda543bc59f2e482607ccf84b633724fc32" @@ -1424,9 +1421,9 @@ version = "1.0.21" [[deps.MutableArithmetics]] deps = ["LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "22df8573f8e7c593ac205455ca088989d0a2c7a0" +git-tree-sha1 = "7c25249fc13a070f5ba433c50e21e22bb33c6fb0" uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" -version = "1.6.7" +version = "1.7.1" [[deps.NLSolversBase]] deps = ["ADTypes", "DifferentiationInterface", "Distributed", "FiniteDiff", "ForwardDiff"] @@ -1451,10 +1448,10 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.NonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SciMLLogging", "SimpleNonlinearSolve", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "d27bcf0cebf8786edcc2eaa4455c959e680334e7" +deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SciMLLogging", "Setfield", "SimpleNonlinearSolve", "StaticArraysCore", "SymbolicIndexingInterface"] +git-tree-sha1 = "ae0b0f875e4dfda538ab6977ec7939126ee9a1fe" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "4.16.0" +version = "4.19.0" [deps.NonlinearSolve.extensions] NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" @@ -1484,10 +1481,10 @@ version = "4.16.0" Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" [[deps.NonlinearSolveBase]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "LinearAlgebra", "LogExpFunctions", "Markdown", "MaybeInplace", "PreallocationTools", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "4f595a0977d6e048fa1e3c382b088b950f8c7934" +deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "LogExpFunctions", "Markdown", "MaybeInplace", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] +git-tree-sha1 = "a19a5df29ef2b197499fc631fa1a59385ae15262" uuid = "be0214bd-f91f-a760-ac4e-3421ce2b2da0" -version = "2.15.0" +version = "2.25.0" [deps.NonlinearSolveBase.extensions] NonlinearSolveBaseBandedMatricesExt = "BandedMatrices" @@ -1517,15 +1514,15 @@ version = "2.15.0" [[deps.NonlinearSolveFirstOrder]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConcreteStructs", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLJacobianOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "eea7cbe389b168c77df7ff779fb7277019c685c8" +git-tree-sha1 = "ce68820a4f421fb5bee7ec4dcf875aff33886bfb" uuid = "5959db7a-ea39-4486-b5fe-2dd0bf03d60d" -version = "2.0.0" +version = "2.1.1" [[deps.NonlinearSolveQuasiNewton]] deps = ["ArrayInterface", "CommonSolve", "ConcreteStructs", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLOperators", "StaticArraysCore"] -git-tree-sha1 = "ade27e8e9566b6cec63ee62f6a6650a11cf9a2eb" +git-tree-sha1 = "538432ca1aea8bf63db02929bf870501f8a7c64c" uuid = "9a2c21bd-3a47-402d-9113-8faf9a0ee114" -version = "1.12.0" +version = "1.13.1" weakdeps = ["ForwardDiff"] [deps.NonlinearSolveQuasiNewton.extensions] @@ -1533,9 +1530,9 @@ weakdeps = ["ForwardDiff"] [[deps.NonlinearSolveSpectralMethods]] deps = ["CommonSolve", "ConcreteStructs", "LineSearch", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "eafd027b5cd768f19bb5de76c0e908a9065ddd36" +git-tree-sha1 = "a3781e12becdf0ce5520bd97ec617e879bf4e9f2" uuid = "26075421-4e9a-44e1-8bd1-420ed7ad02b2" -version = "1.6.0" +version = "1.7.1" weakdeps = ["ForwardDiff"] [deps.NonlinearSolveSpectralMethods.extensions] @@ -1548,10 +1545,10 @@ uuid = "54ca160b-1b9f-5127-a996-1867f4bc2a2c" version = "0.5.0" [[deps.ODEInterfaceDiffEq]] -deps = ["Compat", "DataStructures", "DiffEqBase", "FunctionWrappers", "LinearAlgebra", "ODEInterface", "Reexport", "SciMLBase"] -git-tree-sha1 = "461a47df8a942ee454a7d71b657d8460c2e339d2" +deps = ["Compat", "DataStructures", "DiffEqBase", "FunctionWrappers", "LinearAlgebra", "ODEInterface", "Reexport", "SciMLBase", "SciMLLogging"] +git-tree-sha1 = "38fb6b73dcc72515c856cdbdcafb6419b5ea25c2" uuid = "09606e27-ecf5-54fc-bb29-004bd9f985bf" -version = "3.16.0" +version = "4.0.0" [[deps.ODEInterface_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -1576,14 +1573,14 @@ version = "1.3.6+0" [[deps.OpenBLAS32_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6065c4cff8fee6c6770b277af45d5082baacdba1" +git-tree-sha1 = "dd0d9979377e43918a80486a562ddedcc6d9bdf3" uuid = "656ef2d0-ae68-5445-9ca0-591084a874a2" -version = "0.3.24+0" +version = "0.3.33+0" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.23+5" +version = "0.3.27+1" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] @@ -1592,9 +1589,9 @@ version = "0.8.5+0" [[deps.OpenSSH_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "OpenSSL_jll", "Zlib_jll"] -git-tree-sha1 = "301412a644646fdc0ad67d0a87487466b491e53d" +git-tree-sha1 = "57baa4b81a24c2910afbb6d853aa0685e4312bf7" uuid = "9bd350c2-7e96-507f-8002-3f2e150b4e1b" -version = "10.2.1+0" +version = "10.3.1+0" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "NetworkOptions", "OpenSSL_jll", "Sockets"] @@ -1604,9 +1601,9 @@ version = "1.6.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "c9cbeda6aceffc52d8a0017e71db27c7a7c0beaf" +git-tree-sha1 = "2ac022577e5eac7da040de17776d51bb770cd895" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.5.5+0" +version = "3.5.6+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -1626,28 +1623,22 @@ uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.8.1" [[deps.OrdinaryDiffEq]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FillArrays", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "MacroTools", "MuladdMacro", "NonlinearSolve", "OrdinaryDiffEqAdamsBashforthMoulton", "OrdinaryDiffEqBDF", "OrdinaryDiffEqCore", "OrdinaryDiffEqDefault", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqExplicitRK", "OrdinaryDiffEqExponentialRK", "OrdinaryDiffEqExtrapolation", "OrdinaryDiffEqFIRK", "OrdinaryDiffEqFeagin", "OrdinaryDiffEqFunctionMap", "OrdinaryDiffEqHighOrderRK", "OrdinaryDiffEqIMEXMultistep", "OrdinaryDiffEqLinear", "OrdinaryDiffEqLowOrderRK", "OrdinaryDiffEqLowStorageRK", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqNordsieck", "OrdinaryDiffEqPDIRK", "OrdinaryDiffEqPRK", "OrdinaryDiffEqQPRK", "OrdinaryDiffEqRKN", "OrdinaryDiffEqRosenbrock", "OrdinaryDiffEqSDIRK", "OrdinaryDiffEqSSPRK", "OrdinaryDiffEqStabilizedIRK", "OrdinaryDiffEqStabilizedRK", "OrdinaryDiffEqSymplecticRK", "OrdinaryDiffEqTsit5", "OrdinaryDiffEqVerner", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleNonlinearSolve", "SparseArrays", "Static", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "924e1db15095c7df6b844231c00c40d756a7553d" +deps = ["ADTypes", "CommonSolve", "DocStringExtensions", "OrdinaryDiffEqBDF", "OrdinaryDiffEqCore", "OrdinaryDiffEqDefault", "OrdinaryDiffEqRosenbrock", "OrdinaryDiffEqTsit5", "OrdinaryDiffEqVerner", "SciMLBase"] +git-tree-sha1 = "4c411ca0fa291015bc4c23058799a7280c4223e4" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.108.0" - -[[deps.OrdinaryDiffEqAdamsBashforthMoulton]] -deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqLowOrderRK", "Polyester", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static"] -git-tree-sha1 = "8307937159c3aeec5f19f4b661d82d96d25a3ff1" -uuid = "89bda076-bce5-4f1c-845f-551c83cdda9a" -version = "1.9.0" +version = "7.0.0" [[deps.OrdinaryDiffEqBDF]] -deps = ["ADTypes", "ArrayInterface", "DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqSDIRK", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "22b0c4f7939af140b7f7f4ce2cce90d9f72fa515" +deps = ["ADTypes", "ArrayInterface", "DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqSDIRK", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "2a193931b5dc2400f7f4fb7593b23e0aca96a581" uuid = "6ad6398a-0878-4a85-9266-38940aa047c8" -version = "1.22.0" +version = "2.0.0" [[deps.OrdinaryDiffEqCore]] -deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ConcreteStructs", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FillArrays", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "Polyester", "PrecompileTools", "Preferences", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Static", "StaticArrayInterface", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "b4a8d9b96931c2fc69126233bbe6d1a11b053d77" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ConcreteStructs", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "PrecompileTools", "Preferences", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "86c210d134f09139a294f0329006d6cc20275650" uuid = "bbf590c4-e513-4bbe-9b18-05decba2e5d8" -version = "3.22.0" +version = "4.0.0" [deps.OrdinaryDiffEqCore.extensions] OrdinaryDiffEqCoreMooncakeExt = "Mooncake" @@ -1659,169 +1650,60 @@ version = "3.22.0" [[deps.OrdinaryDiffEqDefault]] deps = ["ADTypes", "DiffEqBase", "EnumX", "LinearAlgebra", "LinearSolve", "OrdinaryDiffEqBDF", "OrdinaryDiffEqCore", "OrdinaryDiffEqRosenbrock", "OrdinaryDiffEqTsit5", "OrdinaryDiffEqVerner", "PrecompileTools", "Preferences", "Reexport", "SciMLBase"] -git-tree-sha1 = "0f40d969dd10d1b226c864bf7dc4b4b8933bc130" +git-tree-sha1 = "c2ad58656aff6d468109df04a246b018e92b21d8" uuid = "50262376-6c5a-4cf5-baba-aaf4f84d72d7" -version = "1.13.0" +version = "2.1.0" [[deps.OrdinaryDiffEqDifferentiation]] -deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "LinearAlgebra", "LinearSolve", "OrdinaryDiffEqCore", "SciMLBase", "SciMLOperators", "SparseMatrixColorings", "StaticArrayInterface", "StaticArrays"] -git-tree-sha1 = "c85968ea296acaff5de6ed0d9b64ddb00f4ea01f" +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "LinearAlgebra", "LinearSolve", "OrdinaryDiffEqCore", "SciMLBase", "SciMLOperators", "SparseMatrixColorings", "StaticArraysCore"] +git-tree-sha1 = "faf3fe4824557bc72aa126a845586f71d377a70a" uuid = "4302a76b-040a-498a-8c04-15b101fed76b" -version = "2.2.1" +version = "3.0.0" weakdeps = ["SparseArrays"] [deps.OrdinaryDiffEqDifferentiation.extensions] OrdinaryDiffEqDifferentiationSparseArraysExt = "SparseArrays" -[[deps.OrdinaryDiffEqExplicitRK]] -deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] -git-tree-sha1 = "c5b900878b088776b8d1bd5a7b1d94e301e21c4e" -uuid = "9286f039-9fbf-40e8-bf65-aa933bdc4db0" -version = "1.9.0" - -[[deps.OrdinaryDiffEqExponentialRK]] -deps = ["ADTypes", "DiffEqBase", "ExponentialUtilities", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "RecursiveArrayTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "72156f954b199ff23dada0e8c0f12c44503b5cf9" -uuid = "e0540318-69ee-4070-8777-9e2de6de23de" -version = "1.13.0" - -[[deps.OrdinaryDiffEqExtrapolation]] -deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "FastPower", "LinearSolve", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "Polyester", "RecursiveArrayTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "129730b7b6cb60cc9c18e0db5861f4a7ed2c30b9" -uuid = "becaefa8-8ca2-5cf9-886d-c06f3d2bd2c4" -version = "1.16.0" - [[deps.OrdinaryDiffEqFIRK]] -deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "FastGaussQuadrature", "FastPower", "LinearAlgebra", "LinearSolve", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "Polyester", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators"] -git-tree-sha1 = "342c716e0c15ab44203f68a78f98800ec560df82" +deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "FastGaussQuadrature", "FastPower", "LinearAlgebra", "LinearSolve", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators"] +git-tree-sha1 = "837e43119bc6a4bd2d193479c590fc5841483535" uuid = "5960d6e9-dd7a-4743-88e7-cf307b64f125" -version = "1.23.0" - -[[deps.OrdinaryDiffEqFeagin]] -deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static"] -git-tree-sha1 = "b123f64a8635a712ceb037a7d2ffe2a1875325d3" -uuid = "101fe9f7-ebb6-4678-b671-3a81e7194747" -version = "1.8.0" - -[[deps.OrdinaryDiffEqFunctionMap]] -deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static"] -git-tree-sha1 = "cbd291508808caf10cf455f974c2025e886ed2a3" -uuid = "d3585ca7-f5d3-4ba6-8057-292ed1abd90f" -version = "1.9.0" - -[[deps.OrdinaryDiffEqHighOrderRK]] -deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static"] -git-tree-sha1 = "9584dcc90cf10216de7aa0f2a1edc0f54d254cf6" -uuid = "d28bc4f8-55e1-4f49-af69-84c1a99f0f58" -version = "1.9.0" - -[[deps.OrdinaryDiffEqIMEXMultistep]] -deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "Reexport", "SciMLBase"] -git-tree-sha1 = "9280abaf9ac36d60dd774113f7ce8a7f826d6e2e" -uuid = "9f002381-b378-40b7-97a6-27a27c83f129" -version = "1.12.0" - -[[deps.OrdinaryDiffEqLinear]] -deps = ["DiffEqBase", "ExponentialUtilities", "LinearAlgebra", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators"] -git-tree-sha1 = "c92913fa5942ed9bc748f3e79a5c693c8ec0c3d7" -uuid = 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"OrdinaryDiffEqDifferentiation", "PreallocationTools", "RecursiveArrayTools", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleNonlinearSolve", "SparseArrays", "StaticArrays"] -git-tree-sha1 = "a75727e93ffef0f0bc408372988f7bc0767b1781" +deps = ["ADTypes", "ArrayInterface", "DiffEqBase", "FastBroadcast", "FastClosures", "ForwardDiff", "LinearAlgebra", "LinearSolve", "MuladdMacro", "NonlinearSolve", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "PreallocationTools", "RecursiveArrayTools", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleNonlinearSolve", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "c3e92bdb7bf16385e6f7b505f78601a2708eff28" uuid = "127b3ac7-2247-4354-8eb6-78cf4e7c58e8" -version = "1.23.0" - -[[deps.OrdinaryDiffEqNordsieck]] -deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqTsit5", "Polyester", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static"] -git-tree-sha1 = 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"OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqRosenbrockTableaus", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase"] +git-tree-sha1 = "803334224154e4a2a9d984547dd4449d3ca71c63" uuid = "43230ef6-c299-4910-a778-202eb28ce4ce" -version = "1.25.0" +version = "2.0.0" + +[[deps.OrdinaryDiffEqRosenbrockTableaus]] +git-tree-sha1 = "66acd57301ea9c79ff92b13b72135af258c141ab" +uuid = "b4bd8bb3-f80f-41d2-9b21-73a655b304b9" +version = "2.0.0" [[deps.OrdinaryDiffEqSDIRK]] -deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] -git-tree-sha1 = "0b766d820e3b948881f1f246899de9ef3d329224" +deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "8df990b85ea063a20df3f1b1dddab9d0afec985c" uuid = "2d112036-d095-4a1e-ab9a-08536f3ecdbf" -version = "1.12.0" - -[[deps.OrdinaryDiffEqSSPRK]] -deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static", "StaticArrays"] -git-tree-sha1 = "8abc61382a0c6469aa9c3bff2d61c9925a088320" -uuid = "669c94d9-1f4b-4b64-b377-1aa079aa2388" -version = "1.11.0" - -[[deps.OrdinaryDiffEqStabilizedIRK]] -deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqStabilizedRK", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays"] -git-tree-sha1 = "cf6856c731ddf9866e3e22612cce5e270f071545" -uuid = "e3e12d00-db14-5390-b879-ac3dd2ef6296" -version = 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"MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "d9cedcfa2cdae8859b4510b9d01ada9852cd6d9d" uuid = "b1df2697-797e-41e3-8120-5422d3b24e4a" -version = "1.9.0" +version = "2.0.0" [[deps.OrdinaryDiffEqVerner]] -deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static", "TruncatedStacktraces"] -git-tree-sha1 = "5ca5dbbfea89e14f283ce9fe2301c528ff4ec007" +deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "fb8ae6a290beed2ef61fa2e7571d921e1100c365" uuid = "79d7bb75-1356-48c1-b8c0-6832512096c2" -version = "1.11.0" +version = "2.0.0" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -1840,15 +1722,15 @@ weakdeps = ["StatsBase"] [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "0662b083e11420952f2e62e17eddae7fc07d5997" +git-tree-sha1 = "58e5ed5e386e156bd93e86b305ebd21ac63d2d04" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" -version = "1.57.0+0" +version = "1.57.1+0" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "7d2f8f21da5db6a806faf7b9b292296da42b2810" +git-tree-sha1 = "5d5e0a78e971354b1c7bff0655d11fdc1b0e12c8" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.3" +version = "2.8.4" [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] @@ -1857,9 +1739,13 @@ uuid = "30392449-352a-5448-841d-b1acce4e97dc" version = "0.44.2+0" [[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.10.0" +version = "1.11.0" +weakdeps = ["REPL"] + + [deps.Pkg.extensions] + REPLExt = "REPL" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1899,23 +1785,11 @@ git-tree-sha1 = "67afbcbe9e184d6729a92a022147ed4cf972ca7b" uuid = "e409e4f3-bfea-5376-8464-e040bb5c01ab" version = "0.4.7" -[[deps.Polyester]] -deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "16bbc30b5ebea91e9ce1671adc03de2832cff552" -uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.19" - -[[deps.PolyesterWeave]] -deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] -git-tree-sha1 = "645bed98cd47f72f67316fd42fc47dee771aefcd" -uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad" -version = "0.2.2" - [[deps.PreallocationTools]] deps = ["Adapt", "ArrayInterface", "PrecompileTools"] -git-tree-sha1 = "dc8d6bde5005a0eac05ae8faf1eceaaca166cfa4" +git-tree-sha1 = "e16b73bf892c55d16d53c9c0dbd0fb31cb7e25da" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "1.1.2" +version = "1.2.0" [deps.PreallocationTools.extensions] PreallocationToolsForwardDiffExt = "ForwardDiff" @@ -1948,6 +1822,7 @@ version = "0.5.7" [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" +version = "1.11.0" [[deps.PtrArrays]] git-tree-sha1 = "4fbbafbc6251b883f4d2705356f3641f3652a7fe" @@ -1986,9 +1861,9 @@ version = "6.10.2+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9da16da70037ba9d701192e27befedefb91ec284" +git-tree-sha1 = "5e8e8b0ab68215d7a2b14b9921a946fee794749e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.11.2" +version = "2.11.3" [deps.QuadGK.extensions] QuadGKEnzymeExt = "Enzyme" @@ -1997,12 +1872,14 @@ version = "2.11.2" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" [[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" +version = "1.11.0" [[deps.Random]] deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +version = "1.11.0" [[deps.ReadOnlyArrays]] git-tree-sha1 = "e6f7ddf48cf141cb312b078ca21cb2d29d0dc11d" @@ -2029,16 +1906,19 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "LinearAlgebra", "PrecompileTools", "RecipesBase", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "18d2a6fd1ea9a8205cadb3a5704f8e51abdd748b" +git-tree-sha1 = "57b6fb3932fc8d1fc911f840d2c9de5fe3ba5008" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.48.0" +version = "4.3.0" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsCUDAExt = "CUDA" RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsFastBroadcastPolyesterExt = ["FastBroadcast", "Polyester"] RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsKernelAbstractionsExt = "KernelAbstractions" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsMooncakeExt = "Mooncake" RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] RecursiveArrayToolsStatisticsExt = "Statistics" @@ -2048,11 +1928,14 @@ version = "3.48.0" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" @@ -2108,34 +1991,31 @@ weakdeps = ["Plots"] [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "7257165d5477fd1025f7cb656019dcb6b0512c38" +git-tree-sha1 = "cfcdc949c4660544ab0fdeed169561cb22f835f4" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.17" +version = "0.5.18" [[deps.SCCNonlinearSolve]] deps = ["CommonSolve", "PrecompileTools", "Reexport", "SciMLBase", "SymbolicIndexingInterface"] -git-tree-sha1 = "b1fed39f2acdd4524c17b50ce6f4406be61b936d" +git-tree-sha1 = "521a298294a6fd11068df0148b4d57bb31550453" uuid = "9dfe8606-65a1-4bb3-9748-cb89d1561431" -version = "1.11.0" -weakdeps = ["ChainRulesCore"] +version = "1.13.0" [deps.SCCNonlinearSolve.extensions] SCCNonlinearSolveChainRulesCoreExt = "ChainRulesCore" + [deps.SCCNonlinearSolve.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" -[[deps.SIMDTypes]] -git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" -uuid = "94e857df-77ce-4151-89e5-788b33177be4" -version = "0.1.0" - [[deps.SciMLBase]] -deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Moshi", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "0be0208add9b6836a701e0ac3ad30bda72fee51d" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "Random", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] +git-tree-sha1 = "450a8405f96d0a7c6caabed0852def06ba8c6bf1" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.150.0" +version = "3.7.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2143,7 +2023,6 @@ version = "2.150.0" SciMLBaseDistributionsExt = "Distributions" SciMLBaseEnzymeExt = "Enzyme" SciMLBaseForwardDiffExt = "ForwardDiff" - SciMLBaseMLStyleExt = "MLStyle" SciMLBaseMakieExt = "Makie" SciMLBaseMeasurementsExt = "Measurements" SciMLBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" @@ -2163,7 +2042,6 @@ version = "2.150.0" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - MLStyle = "d8e11817-5142-5d16-987a-aa16d5891078" Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" @@ -2184,9 +2062,9 @@ version = "0.1.3" [[deps.SciMLJacobianOperators]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DifferentiationInterface", "FastClosures", "LinearAlgebra", "SciMLBase", "SciMLOperators"] -git-tree-sha1 = "e96d5e96debf7f80a50d0b976a13dea556ccfd3a" +git-tree-sha1 = "7156a5b51cba1bea33a82a036939ead4131f92bc" uuid = "19f34311-ddf3-4b8b-af20-060888a46c0e" -version = "0.1.12" +version = "0.1.13" [[deps.SciMLLogging]] deps = ["Logging", "LoggingExtras", "Preferences"] @@ -2202,9 +2080,9 @@ version = "1.9.1" [[deps.SciMLOperators]] deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra"] -git-tree-sha1 = "794c760e6aafe9f40dcd7dd30526ea33f0adc8b7" +git-tree-sha1 = "0e34162268883db01c04f988895a80d0659071bb" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "1.15.1" +version = "1.17.0" weakdeps = ["SparseArrays", "StaticArraysCore"] [deps.SciMLOperators.extensions] @@ -2230,6 +2108,7 @@ version = "1.3.0" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" +version = "1.11.0" [[deps.Setfield]] deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] @@ -2250,9 +2129,9 @@ version = "1.2.0" [[deps.SimpleNonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "744c3f0fb186ad28376199c1e72ca39d0c614b5d" +git-tree-sha1 = "d688de789b7e643326caf9a1051376dadbcd8873" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "2.11.0" +version = "2.11.1" [deps.SimpleNonlinearSolve.extensions] SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" @@ -2272,6 +2151,7 @@ version = "0.9.5" [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" +version = "1.11.0" [[deps.SortingAlgorithms]] deps = ["DataStructures"] @@ -2282,48 +2162,59 @@ version = "1.2.2" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -version = "1.10.0" +version = "1.11.0" [[deps.SparseMatrixColorings]] deps = ["ADTypes", "DocStringExtensions", "LinearAlgebra", "PrecompileTools", "Random", "SparseArrays"] -git-tree-sha1 = "fa43a02c01e3e3cb065c89bf9b648b89e3c06f18" +git-tree-sha1 = "f63d76c7b7c329cf11badd564fd8ba877b09c3fe" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.4.25" +version = "0.4.27" [deps.SparseMatrixColorings.extensions] - SparseMatrixColoringsCUDAExt = "CUDA" + SparseMatrixColoringsCUDAExt = ["CUDA", "cuSPARSE"] SparseMatrixColoringsCliqueTreesExt = "CliqueTrees" SparseMatrixColoringsColorsExt = "Colors" + SparseMatrixColoringsGPUArraysExt = "GPUArrays" SparseMatrixColoringsJuMPExt = ["JuMP", "MathOptInterface"] [deps.SparseMatrixColorings.weakdeps] CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" + GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" JuMP = "4076af6c-e467-56ae-b986-b466b2749572" MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" + cuSPARSE = "b26da814-b3bc-49ef-b0ee-c816305aa060" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "5acc6a41b3082920f79ca3c759acbcecf18a8d78" +git-tree-sha1 = "2700b235561b0335d5bef7097a111dc513b8655e" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.7.1" -weakdeps = ["ChainRulesCore"] +version = "2.7.2" [deps.SpecialFunctions.extensions] SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" + [deps.SpecialFunctions.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + [[deps.StableRNGs]] deps = ["Random"] git-tree-sha1 = "4f96c596b8c8258cc7d3b19797854d368f243ddc" uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" version = "1.0.4" +[[deps.StarAlgebras]] +deps = ["LinearAlgebra", "MutableArithmetics", "SparseArrays"] +git-tree-sha1 = "235b1f9d287bbf34083b3d0829343a7942c0ad1c" +uuid = "0c0c59c1-dc5f-42e9-9a8b-b5dc384a6cd1" +version = "0.3.0" + [[deps.StateSelection]] deps = ["BipartiteGraphs", "DocStringExtensions", "FindFirstFunctions", "Graphs", "LinearAlgebra", "OrderedCollections", "Setfield", "SparseArrays"] -git-tree-sha1 = "ae58a0d7f72dd4bb77574d8247b84b11f5517aea" +git-tree-sha1 = "824641f6d414f0885200e034e3853c3c2f61ac43" uuid = "64909d44-ed92-46a8-bbd9-f047dfbdc84b" -version = "1.5.1" +version = "1.9.2" [deps.StateSelection.extensions] StateSelectionDeepDiffsExt = "DeepDiffs" @@ -2331,43 +2222,34 @@ version = "1.5.1" [deps.StateSelection.weakdeps] DeepDiffs = "ab62b9b5-e342-54a8-a765-a90f495de1a6" -[[deps.Static]] -deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools", "SciMLPublic"] -git-tree-sha1 = "49440414711eddc7227724ae6e570c7d5559a086" -uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.3.1" - -[[deps.StaticArrayInterface]] -deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "SciMLPublic", "Static"] -git-tree-sha1 = "aa1ea41b3d45ac449d10477f65e2b40e3197a0d2" -uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.9.0" -weakdeps = ["OffsetArrays", "StaticArrays"] - - [deps.StaticArrayInterface.extensions] - StaticArrayInterfaceOffsetArraysExt = "OffsetArrays" - StaticArrayInterfaceStaticArraysExt = "StaticArrays" - [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] git-tree-sha1 = "246a8bb2e6667f832eea063c3a56aef96429a3db" uuid = "90137ffa-7385-5640-81b9-e52037218182" version = "1.9.18" -weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" + [deps.StaticArrays.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" + [[deps.StaticArraysCore]] git-tree-sha1 = "6ab403037779dae8c514bad259f32a447262455a" uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" version = "1.4.4" [[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] +deps = ["LinearAlgebra"] +git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.10.0" +version = "1.11.1" +weakdeps = ["SparseArrays"] + + [deps.Statistics.extensions] + SparseArraysExt = ["SparseArrays"] [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -2386,17 +2268,14 @@ deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Re git-tree-sha1 = "91f091a8716a6bb38417a6e6f274602a19aaa685" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" version = "1.5.2" -weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] StatsFunsChainRulesCoreExt = "ChainRulesCore" StatsFunsInverseFunctionsExt = "InverseFunctions" -[[deps.StrideArraysCore]] -deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "83151ba8065a73f53ca2ae98bc7274d817aa30f2" -uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.5.8" + [deps.StatsFuns.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" [[deps.StringEncodings]] deps = ["Libiconv_jll"] @@ -2406,9 +2285,9 @@ version = "0.3.7" [[deps.StructArrays]] deps = ["ConstructionBase", "DataAPI", "Tables"] -git-tree-sha1 = "a2c37d815bf00575332b7bd0389f771cb7987214" +git-tree-sha1 = "ad8002667372439f2e3611cfd14097e03fa4bccd" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.7.2" +version = "0.7.3" [deps.StructArrays.extensions] StructArraysAdaptExt = "Adapt" @@ -2425,26 +2304,30 @@ version = "0.7.2" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" + [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse32_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "94fcd6e398534febe67795e7df45c76aa3c34851" +deps = ["Artifacts", "JLLWrappers", "Libdl", "libblastrampoline_jll"] +git-tree-sha1 = "1d43a4874b879f381b8a3a978f0ebe837cfd0922" uuid = "ca45d3f4-326b-53b0-9957-23b75aacb3f2" -version = "5.10.1+0" +version = "7.12.1+0" [[deps.SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "7.2.1+1" +version = "7.7.0+0" [[deps.Sundials]] -deps = ["Accessors", "ArrayInterface", "CEnum", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "LinearSolve", "Logging", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SparseArrays", "Sundials_jll", "SymbolicIndexingInterface"] -git-tree-sha1 = "2d27edb89b7c555a57b8f22bfde92d6828d11cee" +deps = ["Accessors", "ArrayInterface", "CEnum", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "LinearSolve", "Logging", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLLogging", "SparseArrays", "Sundials_jll", "SymbolicIndexingInterface"] +git-tree-sha1 = "4853f12fa4333ab235d939a6d38b368d35f2f492" uuid = "c3572dad-4567-51f8-b174-8c6c989267f4" -version = "5.1.0" +version = "6.1.0" [[deps.Sundials_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS32_jll", "SuiteSparse32_jll"] @@ -2471,10 +2354,10 @@ uuid = "19f23fe9-fdab-4a78-91af-e7b7767979c3" version = "1.1.0" [[deps.SymbolicUtils]] -deps = ["AbstractTrees", "ArrayInterface", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "EnumX", "ExproniconLite", "LinearAlgebra", "MacroTools", "Moshi", "MultivariatePolynomials", "MutableArithmetics", "NaNMath", "PrecompileTools", "ReadOnlyArrays", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "TaskLocalValues", "TermInterface", "WeakCacheSets"] -git-tree-sha1 = "0ed9311359e871309a5af77eb614836bd8097259" +deps = ["AbstractTrees", "ArrayInterface", "Combinatorics", "ConstructionBase", "DataStructures", "Dictionaries", "DocStringExtensions", "DynamicPolynomials", "EnumX", "ExproniconLite", "Graphs", "LinearAlgebra", "MacroTools", "Moshi", "MultivariatePolynomials", "MutableArithmetics", "NaNMath", "PrecompileTools", "ReadOnlyArrays", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "TaskLocalValues", "TermInterface", "WeakCacheSets"] +git-tree-sha1 = "ae8741c34009171ee8e46d5c209cf0a15c469928" uuid = "d1185830-fcd6-423d-90d6-eec64667417b" -version = "4.20.2" +version = "4.26.0" [deps.SymbolicUtils.extensions] SymbolicUtilsChainRulesCoreExt = "ChainRulesCore" @@ -2490,9 +2373,9 @@ version = "4.20.2" [[deps.Symbolics]] deps = ["ADTypes", "AbstractPlutoDingetjes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "Moshi", "MultivariatePolynomials", "MutableArithmetics", "NaNMath", "PrecompileTools", "Preferences", "Primes", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLPublic", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] -git-tree-sha1 = "0a3bbbf97e7204e93b3a9f4c392d2df41069c3ed" +git-tree-sha1 = "85bb4be51a7e90e531b1faa926b9497f436ca535" uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7" -version = "7.16.0" +version = "7.21.0" [deps.Symbolics.extensions] SymbolicsD3TreesExt = "D3Trees" @@ -2562,12 +2445,7 @@ version = "2.0.0" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.ThreadingUtilities]] -deps = ["ManualMemory"] -git-tree-sha1 = "d969183d3d244b6c33796b5ed01ab97328f2db85" -uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" -version = "0.5.5" +version = "1.11.0" [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] @@ -2600,6 +2478,7 @@ version = "1.6.1" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +version = "1.11.0" [[deps.UnPack]] git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" @@ -2608,6 +2487,7 @@ version = "1.0.2" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +version = "1.11.0" [[deps.UnicodeFun]] deps = ["REPL"] @@ -2650,9 +2530,9 @@ version = "0.10.12" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "9cce64c0fdd1960b597ba7ecda2950b5ed957438" +git-tree-sha1 = "b29c22e245d092b8b4e8d3c09ad7baa586d9f573" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.8.2+0" +version = "5.8.3+0" [[deps.Xorg_libICE_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2728,9 +2608,9 @@ version = "0.9.12+0" [[deps.Xorg_libpciaccess_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "4909eb8f1cbf6bd4b1c30dd18b2ead9019ef2fad" +git-tree-sha1 = "58972370b81423fc546c56a60ed1a009450177c3" uuid = "a65dc6b1-eb27-53a1-bb3e-dea574b5389e" -version = "0.18.1+0" +version = "0.19.0+0" [[deps.Xorg_libxcb_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXau_jll", "Xorg_libXdmcp_jll"] @@ -2788,9 +2668,9 @@ version = "1.4.7+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "00af7ebdc563c9217ecc67776d1bbf037dbcebf4" +git-tree-sha1 = "429722587208f02b1cecbddcd20133df2f1ed796" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.44.0+0" +version = "2.47.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2841,9 +2721,9 @@ version = "0.61.1+0" [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" +git-tree-sha1 = "850b06095ee71f0135d644ffd8a52850699581ed" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.13.1+0" +version = "3.13.3+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] @@ -2888,9 +2768,9 @@ version = "1.28.1+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" +git-tree-sha1 = "e51150d5ab85cee6fc36726850f0e627ad2e4aba" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.55+0" +version = "1.6.58+0" [[deps.libsodium_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2919,7 +2799,7 @@ version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.52.0+1" +version = "1.59.0+0" [[deps.oneTBB_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] @@ -2930,7 +2810,7 @@ version = "2022.0.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.6.1+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] diff --git a/benchmarks/DAE/NANDGateProblem.jmd b/benchmarks/DAE/NANDGateProblem.jmd index 652936893..c647ee8d1 100644 --- a/benchmarks/DAE/NANDGateProblem.jmd +++ b/benchmarks/DAE/NANDGateProblem.jmd @@ -6,6 +6,7 @@ author: Jayant Pranjal ```julia using OrdinaryDiffEq, DiffEqDevTools, ModelingToolkit, ODEInterfaceDiffEq, Plots, Sundials, DASSL, DASKR +using OrdinaryDiffEqBDF, OrdinaryDiffEqFIRK, OrdinaryDiffEqRosenbrock using LinearAlgebra using ModelingToolkit: t_nounits as t, D_nounits as D ``` diff --git a/benchmarks/DAE/OregoDAE.jmd b/benchmarks/DAE/OregoDAE.jmd index 568ff0f90..8a4a0ef04 100644 --- a/benchmarks/DAE/OregoDAE.jmd +++ b/benchmarks/DAE/OregoDAE.jmd @@ -6,6 +6,7 @@ author: Chris Rackauckas ```julia using OrdinaryDiffEq, DiffEqDevTools, Sundials, ModelingToolkit, ODEInterfaceDiffEq, Plots, DASSL, DASKR +using OrdinaryDiffEqBDF, OrdinaryDiffEqFIRK, OrdinaryDiffEqRosenbrock, OrdinaryDiffEqSDIRK using LinearAlgebra using ModelingToolkit: t_nounits as t, D_nounits as D diff --git a/benchmarks/DAE/Project.toml b/benchmarks/DAE/Project.toml index 2812036e2..4233db90d 100644 --- a/benchmarks/DAE/Project.toml +++ b/benchmarks/DAE/Project.toml @@ -5,6 +5,10 @@ DiffEqDevTools = "f3b72e0c-5b89-59e1-b016-84e28bfd966d" ModelingToolkit = "961ee093-0014-501f-94e3-6117800e7a78" ODEInterfaceDiffEq = "09606e27-ecf5-54fc-bb29-004bd9f985bf" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" +OrdinaryDiffEqBDF = "6ad6398a-0878-4a85-9266-38940aa047c8" +OrdinaryDiffEqFIRK = "5960d6e9-dd7a-4743-88e7-cf307b64f125" +OrdinaryDiffEqRosenbrock = "43230ef6-c299-4910-a778-202eb28ce4ce" +OrdinaryDiffEqSDIRK = "2d112036-d095-4a1e-ab9a-08536f3ecdbf" Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" SciMLBenchmarks = "31c91b34-3c75-11e9-0341-95557aab0344" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" @@ -13,16 +17,20 @@ Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" [compat] -DASKR = "2" -DASSL = "2" -DiffEqDevTools = "2.30" +DASKR = "3.1" +DASSL = "3" +DiffEqDevTools = "3" ModelingToolkit = "11" -ODEInterfaceDiffEq = "3.16" -OrdinaryDiffEq = "6.19" +ODEInterfaceDiffEq = "4" +OrdinaryDiffEq = "7" +OrdinaryDiffEqBDF = "2" +OrdinaryDiffEqFIRK = "2" +OrdinaryDiffEqRosenbrock = "2" +OrdinaryDiffEqSDIRK = "2" Plots = "1" SciMLBenchmarks = "0.1" StaticArrays = "1" Statistics = "1" -Sundials = "5" +Sundials = "6" Symbolics = "7" julia = "1.10" diff --git a/benchmarks/DAE/ROBERDAE.jmd b/benchmarks/DAE/ROBERDAE.jmd index 64d0bc5bd..e6c5a8d00 100644 --- a/benchmarks/DAE/ROBERDAE.jmd +++ b/benchmarks/DAE/ROBERDAE.jmd @@ -6,6 +6,7 @@ author: Chris Rackauckas ```julia using OrdinaryDiffEq, DiffEqDevTools, Sundials, ModelingToolkit, ODEInterfaceDiffEq, Plots, DASSL, DASKR +using OrdinaryDiffEqBDF, OrdinaryDiffEqFIRK, OrdinaryDiffEqRosenbrock, OrdinaryDiffEqSDIRK using LinearAlgebra using ModelingToolkit: t_nounits as t, D_nounits as D diff --git a/benchmarks/DAE/TransistorAmplifier.jmd b/benchmarks/DAE/TransistorAmplifier.jmd index 45ac82dee..86afa3e1b 100644 --- a/benchmarks/DAE/TransistorAmplifier.jmd +++ b/benchmarks/DAE/TransistorAmplifier.jmd @@ -6,6 +6,7 @@ author: Aayush Sabharwal, Polic Marko ```julia using DiffEqDevTools, ODEInterfaceDiffEq, Plots using ModelingToolkit, OrdinaryDiffEq, Symbolics +using OrdinaryDiffEqBDF, OrdinaryDiffEqFIRK, OrdinaryDiffEqRosenbrock using ModelingToolkit: t_nounits as t, D_nounits as D using LinearAlgebra diff --git a/benchmarks/DAE/andrews_mechanism.jmd b/benchmarks/DAE/andrews_mechanism.jmd index 7d312e372..1c33922d9 100644 --- a/benchmarks/DAE/andrews_mechanism.jmd +++ b/benchmarks/DAE/andrews_mechanism.jmd @@ -44,6 +44,7 @@ http://www.dm.uniba.it/~testset/ ```julia using OrdinaryDiffEq, Sundials, DiffEqDevTools, ModelingToolkit, Plots +using OrdinaryDiffEqRosenbrock using ODEInterfaceDiffEq, LinearAlgebra using ModelingToolkit: t_nounits as t, D_nounits as D ``` @@ -521,8 +522,8 @@ Jacobian. ```julia println("=== Mass-Matrix ODE Form ===") -for (name, alg) in [("Rodas5P(autodiff=false)", Rodas5P(autodiff = false)), - ("FBDF(autodiff=false)", FBDF(autodiff = false)), +for (name, alg) in [("Rodas5P(autodiff=AutoFiniteDiff())", Rodas5P(autodiff = AutoFiniteDiff())), + ("FBDF(autodiff=AutoFiniteDiff())", FBDF(autodiff = AutoFiniteDiff())), ("radau()", radau()), ("radau5()", radau5())] print(" $name: ") diff --git a/benchmarks/DAE/caraxis.jmd b/benchmarks/DAE/caraxis.jmd index 5058949ab..8e0995d4e 100644 --- a/benchmarks/DAE/caraxis.jmd +++ b/benchmarks/DAE/caraxis.jmd @@ -68,6 +68,7 @@ $$ ```julia using OrdinaryDiffEq, DiffEqDevTools, Sundials, ModelingToolkit, ODEInterfaceDiffEq, Plots, DASSL, DASKR +using OrdinaryDiffEqBDF, OrdinaryDiffEqFIRK, OrdinaryDiffEqRosenbrock using LinearAlgebra using ModelingToolkit: t_nounits as t, D_nounits as D diff --git a/benchmarks/DAE/charge_pump.jmd b/benchmarks/DAE/charge_pump.jmd index 010f92fcc..e5d099017 100644 --- a/benchmarks/DAE/charge_pump.jmd +++ b/benchmarks/DAE/charge_pump.jmd @@ -277,7 +277,7 @@ crossing points (e.g., when $V_{in}(t)$ crosses $V_{T0} = 0.2\,$V). ```julia mtkprob = ODEProblem(sys, [], tspan) -mtk_test = solve(mtkprob, Rodas5P(autodiff = false), abstol = 1e-4, reltol = 1e-4, +mtk_test = solve(mtkprob, Rodas5P(autodiff = AutoFiniteDiff()), abstol = 1e-4, reltol = 1e-4, tstops = disc_times, maxiters = Int(1e6), dt = 1e-15) println("Rodas5P on MTK-reduced system: retcode = $(mtk_test.retcode), ", "steps = $(length(mtk_test.t)), final t = $(mtk_test.t[end])") diff --git a/benchmarks/DAE/fekete.jmd b/benchmarks/DAE/fekete.jmd index b7fa13e65..52177c8f6 100644 --- a/benchmarks/DAE/fekete.jmd +++ b/benchmarks/DAE/fekete.jmd @@ -45,6 +45,7 @@ algebraic equations. IMM-DTU, Tech. Report (1999). Available at the ```julia using OrdinaryDiffEq, DiffEqDevTools, Sundials, ModelingToolkit, ODEInterfaceDiffEq, Plots, DASKR +using OrdinaryDiffEqBDF, OrdinaryDiffEqFIRK, OrdinaryDiffEqRosenbrock using ModelingToolkit: t_nounits as t, D_nounits as D using LinearAlgebra, Statistics ``` diff --git a/benchmarks/DAE/slider_crank.jmd b/benchmarks/DAE/slider_crank.jmd index a6d2e2f0c..dcb69bdd6 100644 --- a/benchmarks/DAE/slider_crank.jmd +++ b/benchmarks/DAE/slider_crank.jmd @@ -31,6 +31,7 @@ system of DAEs and PDEs, Math. Modelling of Systems 2, 1-18 (1996). ```julia using OrdinaryDiffEq, Sundials, DiffEqDevTools, ModelingToolkit, Plots +using OrdinaryDiffEqRosenbrock using LinearAlgebra using ModelingToolkit: t_nounits as t, D_nounits as D diff --git a/benchmarks/DAE/two_bit_adder.jmd b/benchmarks/DAE/two_bit_adder.jmd index 1b4396b9f..94ce06988 100644 --- a/benchmarks/DAE/two_bit_adder.jmd +++ b/benchmarks/DAE/two_bit_adder.jmd @@ -43,6 +43,7 @@ http://www.dm.uniba.it/~testset/ ```julia using OrdinaryDiffEq, DiffEqDevTools, Sundials, ModelingToolkit, Plots +using OrdinaryDiffEqBDF, OrdinaryDiffEqFIRK, OrdinaryDiffEqRosenbrock using DASSL, DASKR using LinearAlgebra, SparseArrays ``` diff --git a/benchmarks/DAE/water_tube.jmd b/benchmarks/DAE/water_tube.jmd index 7a118676e..b5c89c227 100644 --- a/benchmarks/DAE/water_tube.jmd +++ b/benchmarks/DAE/water_tube.jmd @@ -39,6 +39,7 @@ Release 2.4, University of Bari, 2006. ```julia using OrdinaryDiffEq, Sundials, DiffEqDevTools, ModelingToolkit, ODEInterfaceDiffEq, Plots, DASSL, DASKR +using OrdinaryDiffEqBDF, OrdinaryDiffEqFIRK, OrdinaryDiffEqRosenbrock using LinearAlgebra using ModelingToolkit: t_nounits as t, D_nounits as D ``` diff --git a/benchmarks/DAE/wheelset.jmd b/benchmarks/DAE/wheelset.jmd index a52aeb4da..0df74cb14 100644 --- a/benchmarks/DAE/wheelset.jmd +++ b/benchmarks/DAE/wheelset.jmd @@ -40,6 +40,7 @@ in vehicle system dynamics. Surv. Math. Ind., 1:1–37 (1991). ```julia using OrdinaryDiffEq, DiffEqDevTools, Sundials, ODEInterfaceDiffEq, Plots, DASSL, DASKR, ModelingToolkit +using OrdinaryDiffEqBDF, OrdinaryDiffEqFIRK, OrdinaryDiffEqRosenbrock using ModelingToolkit: t_nounits as t, D_nounits as D using LinearAlgebra ``` diff --git a/benchmarks/DynamicalODE/Henon-Heiles_energy_conservation_benchmark.jmd b/benchmarks/DynamicalODE/Henon-Heiles_energy_conservation_benchmark.jmd index 2ff15a901..18ebff8a5 100644 --- a/benchmarks/DynamicalODE/Henon-Heiles_energy_conservation_benchmark.jmd +++ b/benchmarks/DynamicalODE/Henon-Heiles_energy_conservation_benchmark.jmd @@ -17,6 +17,7 @@ In order to separate these two, we will use `iip` for the in-place names and `oo ```julia using OrdinaryDiffEq, Plots, DiffEqCallbacks +using OrdinaryDiffEqRKN, OrdinaryDiffEqSymplecticRK using OrdinaryDiffEqTaylorSeries using SciMLBenchmarks using TaylorIntegration, LinearAlgebra, StaticArrays diff --git a/benchmarks/DynamicalODE/Manifest.toml b/benchmarks/DynamicalODE/Manifest.toml index 96173f0e7..4b5af6abb 100644 --- a/benchmarks/DynamicalODE/Manifest.toml +++ b/benchmarks/DynamicalODE/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.11" +julia_version = "1.11.9" manifest_format = "2.0" -project_hash = "86afdaa54968a3f20ac07b2fed0d5cfb837d738a" +project_hash = "fd647a2cb72514330c29e4a56116a4aae60982c4" [[deps.ADTypes]] -git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" +git-tree-sha1 = "bbc22a9a08a0ef6460041086d8a7b27940ed4ffd" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.21.0" +version = "1.22.0" weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] [deps.ADTypes.extensions] @@ -28,9 +28,9 @@ version = "0.4.5" [[deps.Accessors]] deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] -git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +git-tree-sha1 = "2eeb2c9bef11013efc6f8f97f32ee59b146b09fb" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.43" +version = "0.1.44" [deps.Accessors.extensions] AxisKeysExt = "AxisKeys" @@ -52,9 +52,9 @@ version = "0.1.43" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "35ea197a51ce46fcd01c4a44befce0578a1aaeca" +git-tree-sha1 = "0761717147821d696c9470a7a86364b2fbd22fd8" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.5.0" +version = "4.5.2" weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] @@ -69,7 +69,7 @@ version = "1.1.3" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.ArnoldiMethod]] deps = ["LinearAlgebra", "Random", "StaticArrays"] @@ -79,9 +79,9 @@ version = "0.4.0" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "78b3a7a536b4b0a747a0f296ea77091ca0a9f9a3" +git-tree-sha1 = "54f895554d05c83e3dd59f6a396671dae8999573" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.23.0" +version = "7.24.0" [deps.ArrayInterface.extensions] ArrayInterfaceAMDGPUExt = "AMDGPU" @@ -125,9 +125,25 @@ weakdeps = ["SparseArrays"] [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +version = "1.11.0" + +[[deps.BandedMatrices]] +deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] +git-tree-sha1 = "02fa77c70ba84361b9bc9ff28523bd9d78519265" +uuid = "aae01518-5342-5314-be14-df237901396f" +version = "1.11.0" + + [deps.BandedMatrices.extensions] + BandedMatricesSparseArraysExt = "SparseArrays" + CliqueTreesExt = "CliqueTrees" + + [deps.BandedMatrices.weakdeps] + CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Bijections]] git-tree-sha1 = "a2d308fcd4c2fb90e943cf9cd2fbfa9c32b69733" @@ -149,31 +165,22 @@ git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" version = "0.1.9" -[[deps.BitTwiddlingConvenienceFunctions]] -deps = ["Static"] -git-tree-sha1 = "f21cfd4950cb9f0587d5067e69405ad2acd27b87" -uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" -version = "0.1.6" - [[deps.BlockArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] git-tree-sha1 = "0f606a9894e2bcda541ceb82a91a13c5d450ed97" uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" version = "1.9.3" +weakdeps = ["Adapt", "BandedMatrices"] [deps.BlockArrays.extensions] BlockArraysAdaptExt = "Adapt" BlockArraysBandedMatricesExt = "BandedMatrices" - [deps.BlockArrays.weakdeps] - Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - [[deps.BracketingNonlinearSolve]] deps = ["CommonSolve", "ConcreteStructs", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "4999dff8efd76814f6662519b985aeda975a1924" +git-tree-sha1 = "7ad7171d693ae5552ac43862e7f6b61df4471c2b" uuid = "70df07ce-3d50-431d-a3e7-ca6ddb60ac1e" -version = "1.11.0" +version = "1.12.1" weakdeps = ["ChainRulesCore", "ForwardDiff"] [deps.BracketingNonlinearSolve.extensions] @@ -186,17 +193,11 @@ git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" version = "1.0.9+0" -[[deps.CPUSummary]] -deps = ["CpuId", "IfElse", "PrecompileTools", "Preferences", "Static"] -git-tree-sha1 = "f3a21d7fc84ba618a779d1ed2fcca2e682865bab" -uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" -version = "0.2.7" - [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d0efe2c6fdcdaa1c161d206aa8b933788397ec71" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.5+1" +version = "1.18.6+0" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] @@ -206,20 +207,14 @@ version = "1.73.0" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" +git-tree-sha1 = "12177ad6b3cad7fd50c8b3825ce24a99ad61c18f" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.26.0" +version = "1.26.1" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] ChainRulesCoreSparseArraysExt = "SparseArrays" -[[deps.CloseOpenIntervals]] -deps = ["Static", "StaticArrayInterface"] -git-tree-sha1 = "05ba0d07cd4fd8b7a39541e31a7b0254704ea581" -uuid = "fb6a15b2-703c-40df-9091-08a04967cfa9" -version = "0.1.13" - [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" @@ -242,13 +237,11 @@ deps = ["FixedPointNumbers", "Random"] git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" version = "0.12.1" +weakdeps = ["StyledStrings"] [deps.ColorTypes.extensions] StyledStringsExt = "StyledStrings" - [deps.ColorTypes.weakdeps] - StyledStrings = "f489334b-da3d-4c2e-b8f0-e476e12c162b" - [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" @@ -348,12 +341,6 @@ git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" version = "0.6.3" -[[deps.CpuId]] -deps = ["Markdown"] -git-tree-sha1 = "fcbb72b032692610bfbdb15018ac16a36cf2e406" -uuid = "adafc99b-e345-5852-983c-f28acb93d879" -version = "0.3.1" - [[deps.DataAPI]] git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" @@ -361,9 +348,9 @@ version = "1.16.0" [[deps.DataStructures]] deps = ["OrderedCollections"] -git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" +git-tree-sha1 = "e86f4a2805f7f19bec5129bc9150c38208e5dc23" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.19.3" +version = "0.19.4" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -373,6 +360,7 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" [[deps.Dbus_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] @@ -386,15 +374,22 @@ git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" version = "1.9.1" +[[deps.Dictionaries]] +deps = ["Indexing", "Random", "Serialization"] +git-tree-sha1 = "a55766a9c8f66cf19ffcdbdb1444e249bb4ace33" +uuid = "85a47980-9c8c-11e8-2b9f-f7ca1fa99fb4" +version = "0.4.6" + [[deps.DiffEqBase]] -deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "1719cd1b0a12e01775dc6db1577dd6ace1798fee" +deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "2d7ca58e6ce2d1f7a435773d73d111741e283070" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.210.1" +version = "7.1.0" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" DiffEqBaseChainRulesCoreExt = "ChainRulesCore" + DiffEqBaseDynamicQuantitiesExt = "DynamicQuantities" DiffEqBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] DiffEqBaseFlexUnitsExt = "FlexUnits" DiffEqBaseForwardDiffExt = ["ForwardDiff"] @@ -413,6 +408,7 @@ version = "6.210.1" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" + DynamicQuantities = "06fc5a27-2a28-4c7c-a15d-362465fb6821" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FlexUnits = "76e01b6b-c995-4ce6-8559-91e72a3d4e95" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" @@ -429,9 +425,9 @@ version = "6.210.1" [[deps.DiffEqCallbacks]] deps = ["ConcreteStructs", "DataStructures", "DiffEqBase", "DifferentiationInterface", "LinearAlgebra", "Markdown", "PrecompileTools", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "f17b863c2d5d496363fe36c8d8535cc6a33c9952" +git-tree-sha1 = "51f445c25b80c26c83c61520cde214adf8c05227" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "4.12.0" +version = "4.17.0" [deps.DiffEqCallbacks.extensions] DiffEqCallbacksFunctorsExt = "Functors" @@ -440,10 +436,10 @@ version = "4.12.0" Functors = "d9f16b24-f501-4c13-a1f2-28368ffc5196" [[deps.DiffEqPhysics]] -deps = ["DiffEqBase", "DiffEqCallbacks", "ForwardDiff", "LinearAlgebra", "Printf", "Random", "RecipesBase", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "f7f861718cf904f218915fe1d809ecc9ffc77067" +deps = ["DiffEqBase", "DiffEqCallbacks", "ForwardDiff", "RecipesBase", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArraysCore"] +git-tree-sha1 = "ec20c3c4f01e155e85c5ebf10e299335868485af" uuid = "055956cb-9e8b-5191-98cc-73ae4a59e68a" -version = "3.15.1" +version = "3.18.0" [[deps.DiffResults]] deps = ["StaticArraysCore"] @@ -459,9 +455,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +git-tree-sha1 = "d0250552e42bf7cc36479fd38a6e30004c9e8c2b" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.7.16" +version = "0.7.17" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -471,7 +467,7 @@ version = "0.7.16" DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] - DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGPUArraysCoreExt = ["GPUArraysCore", "Adapt"] DifferentiationInterfaceGTPSAExt = "GTPSA" DifferentiationInterfaceMooncakeExt = "Mooncake" DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] @@ -485,6 +481,7 @@ version = "0.7.16" DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] [deps.DifferentiationInterface.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" @@ -510,6 +507,7 @@ version = "0.7.16" [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.DocStringExtensions]] git-tree-sha1 = "7442a5dfe1ebb773c29cc2962a8980f47221d76c" @@ -517,10 +515,10 @@ uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" version = "0.9.5" [[deps.DomainSets]] -deps = ["CompositeTypes", "IntervalSets", "LinearAlgebra", "StaticArrays"] -git-tree-sha1 = "c249d86e97a7e8398ce2068dce4c078a1c3464de" +deps = ["CompositeTypes", "FunctionMaps", "IntervalSets", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "4599e0cd684f3ff6cbbab73c77553a3d01a8d74d" uuid = "5b8099bc-c8ec-5219-889f-1d9e522a28bf" -version = "0.7.16" +version = "0.7.18" [deps.DomainSets.extensions] DomainSetsMakieExt = "Makie" @@ -536,10 +534,10 @@ uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.6.0" [[deps.DynamicPolynomials]] -deps = ["Future", "LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Reexport", "Test"] -git-tree-sha1 = "3f50fa86c968fc1a9e006c07b6bc40ccbb1b704d" +deps = ["LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Reexport", "StarAlgebras", "Test"] +git-tree-sha1 = "5bfabc3827dfdd164359bad6800c115a81280c00" uuid = "7c1d4256-1411-5781-91ec-d7bc3513ac07" -version = "0.6.4" +version = "0.6.6" [[deps.Elliptic]] git-tree-sha1 = "71c79e77221ab3a29918aaf6db4f217b89138608" @@ -552,9 +550,9 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.7" [[deps.EnzymeCore]] -git-tree-sha1 = "990991b8aa76d17693a98e3a915ac7aa49f08d1a" +git-tree-sha1 = "c6ee69ee502060982d12dbaaf3d8fcb4e835a0d1" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.8.18" +version = "0.8.20" weakdeps = ["Adapt", "ChainRulesCore"] [deps.EnzymeCore.extensions] @@ -581,19 +579,9 @@ version = "0.1.11" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "27af30de8b5445644e8ffe3bcb0d72049c089cf1" +git-tree-sha1 = "8f05e9a2e7c2e3eb524102bb2926c5743c07fbe1" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.7.3+0" - -[[deps.ExponentialUtilities]] -deps = ["Adapt", "ArrayInterface", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "PrecompileTools", "Printf", "SparseArrays", "libblastrampoline_jll"] -git-tree-sha1 = "cc294ead6a85e975a8519dd4a0a6cb294eeb18d1" -uuid = "d4d017d3-3776-5f7e-afef-a10c40355c18" -version = "1.30.0" -weakdeps = ["StaticArrays"] - - [deps.ExponentialUtilities.extensions] - ExponentialUtilitiesStaticArraysExt = "StaticArrays" +version = "2.8.0+0" [[deps.ExprTools]] git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" @@ -613,27 +601,29 @@ version = "0.4.5" [[deps.FFMPEG_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libva_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "66381d7059b5f3f6162f28831854008040a4e905" +git-tree-sha1 = "cac41ca6b2d399adfc95e51240566f8a60a80806" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "8.0.1+1" +version = "8.1.0+0" [[deps.FastBroadcast]] -deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "ab1b34570bcdf272899062e1a56285a53ecaae08" +deps = ["ArrayInterface", "LinearAlgebra"] +git-tree-sha1 = "7feeed2c9a7fa272189a5561bebf0c4ccaedb6ec" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.3.5" +version = "1.3.2" + + [deps.FastBroadcast.extensions] + FastBroadcastPolyesterExt = "Polyester" + FastBroadcastStaticExt = "Static" + + [deps.FastBroadcast.weakdeps] + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" + Static = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" version = "0.3.2" -[[deps.FastGaussQuadrature]] -deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "0044e9f5e49a57e88205e8f30ab73928b05fe5b6" -uuid = "442a2c76-b920-505d-bb47-c5924d526838" -version = "1.1.0" - [[deps.FastPower]] git-tree-sha1 = "862831f78c7a48681a074ecc9aac09f2de563f71" uuid = "a4df4552-cc26-4903-aec0-212e50a0e84b" @@ -659,6 +649,7 @@ version = "1.3.1" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" +version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] @@ -686,9 +677,9 @@ version = "1.8.0" [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "9340ca07ca27093ff68418b7558ca37b05f8aeb1" +git-tree-sha1 = "f7017a4f337f8df189fcce98e32b67a1298a2115" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.29.0" +version = "2.31.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -732,9 +723,9 @@ version = "1.3.7" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "eef4c86803f47dcb61e9b8790ecaa96956fdd8ae" +git-tree-sha1 = "cddeab6487248a39dae1a960fff0ac17b2a28888" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "1.3.2" +version = "1.3.3" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -742,9 +733,9 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "2c5512e11c791d1baed2049c5652441b28fc6a31" +git-tree-sha1 = "70329abc09b886fd2c5d94ad2d9527639c421e3e" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.4+0" +version = "2.14.3+1" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -752,26 +743,42 @@ git-tree-sha1 = "7a214fdac5ed5f59a22c2d9a885a16da1c74bbc7" uuid = "559328eb-81f9-559d-9380-de523a88c83c" version = "1.0.17+0" +[[deps.FunctionMaps]] +deps = ["CompositeTypes", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "31bd99a57edf98990d1c21486032963955450e8d" +uuid = "a85aefff-f8ca-4649-a888-c8e5398bc76c" +version = "0.1.2" + [[deps.FunctionWrappers]] git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" version = "1.1.3" [[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +deps = ["FunctionWrappers", "PrecompileTools", "TruncatedStacktraces"] +git-tree-sha1 = "c1b0c3a166a2a393257aa888787ca817532e14ce" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" +version = "1.8.0" + + [deps.FunctionWrappersWrappers.extensions] + FunctionWrappersWrappersEnzymeExt = ["Enzyme", "EnzymeCore"] + FunctionWrappersWrappersMooncakeExt = "Mooncake" + + [deps.FunctionWrappersWrappers.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" +version = "1.11.0" [[deps.GLFW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] -git-tree-sha1 = "b7bfd56fa66616138dfe5237da4dc13bbd83c67f" +git-tree-sha1 = "9e0fb9e54594c47f278d75063980e43066e26e20" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.4.1+0" +version = "3.4.1+1" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -795,12 +802,6 @@ git-tree-sha1 = "be8a1b8065959e24fdc1b51402f39f3b6f0f6653" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" version = "0.73.24+0" -[[deps.GenericSchur]] -deps = ["LinearAlgebra", "Printf"] -git-tree-sha1 = "a694e2a57394e409f7a11ee0977362a9fafcb8c7" -uuid = "c145ed77-6b09-5dd9-b285-bf645a82121e" -version = "0.5.6" - [[deps.GettextRuntime_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll"] git-tree-sha1 = "45288942190db7c5f760f59c04495064eedf9340" @@ -827,9 +828,9 @@ version = "3.7.0+0" [[deps.Git_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "dc34a3e3d96b4ed305b641e626dc14c12b7824b8" +git-tree-sha1 = "0dd4cfb426924210c8f42742751cbde74b27bfa3" uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb" -version = "2.53.0+0" +version = "2.54.0+0" [[deps.Glib_jll]] deps = ["Artifacts", "GettextRuntime_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] @@ -893,16 +894,16 @@ version = "1.34.4" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" Revise = "295af30f-e4ad-537b-8983-00126c2a3abe" -[[deps.IfElse]] -git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" -uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" -version = "0.1.1" - [[deps.ImplicitDiscreteSolve]] deps = ["ConcreteStructs", "DiffEqBase", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "OrdinaryDiffEqCore", "Reexport", "SciMLBase", "SymbolicIndexingInterface"] -git-tree-sha1 = "80e108544e96389133758dd014b503d8df3cedb8" +git-tree-sha1 = "dc9f649cbcdd4f2b402d7cbbd5cf61517b45ad5a" uuid = "3263718b-31ed-49cf-8a0f-35a466e8af96" -version = "1.8.0" +version = "2.0.0" + +[[deps.Indexing]] +git-tree-sha1 = "ce1566720fd6b19ff3411404d4b977acd4814f9f" +uuid = "313cdc1a-70c2-5d6a-ae34-0150d3930a38" +version = "1.1.1" [[deps.Inflate]] git-tree-sha1 = "d1b1b796e47d94588b3757fe84fbf65a5ec4a80d" @@ -923,11 +924,12 @@ version = "2025.2.0+0" [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" +version = "1.11.0" [[deps.IntervalSets]] -git-tree-sha1 = "d966f85b3b7a8e49d034d27a189e9a4874b4391a" +git-tree-sha1 = "79d6bd28c8d9bccc2229784f1bd637689b256377" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.13" +version = "0.7.14" weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] @@ -981,23 +983,24 @@ version = "0.2.1" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "b6893345fd6658c8e475d40155789f4860ac3b21" +git-tree-sha1 = "c0c9b76f3520863909825cbecdef58cd63de705a" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.1.4+0" +version = "3.1.5+0" [[deps.JumpProcesses]] deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "PoissonRandom", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "SymbolicIndexingInterface"] -git-tree-sha1 = "310fc6ddd46db8946f988b142fc2821f2f6456ff" +git-tree-sha1 = "2a8e5b9b90ef0da05f61904d0a39a7b1c0a83310" uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" -version = "9.23.1" +version = "9.28.0" [deps.JumpProcesses.extensions] JumpProcessesKernelAbstractionsExt = ["Adapt", "KernelAbstractions"] + JumpProcessesOrdinaryDiffEqCoreExt = "OrdinaryDiffEqCore" [deps.JumpProcesses.weakdeps] Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" - FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + OrdinaryDiffEqCore = "bbf590c4-e513-4bbe-9b18-05decba2e5d8" [[deps.Krylov]] deps = ["LinearAlgebra", "Printf", "SparseArrays"] @@ -1013,9 +1016,9 @@ version = "3.100.3+0" [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "aaafe88dccbd957a8d82f7d05be9b69172e0cee3" +git-tree-sha1 = "17b94ecafcfa45e8360a4fc9ca6b583b049e4e37" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "4.0.1+0" +version = "4.1.0+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1023,12 +1026,6 @@ git-tree-sha1 = "eb62a3deb62fc6d8822c0c4bef73e4412419c5d8" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" version = "18.1.8+0" -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "1c602b1127f4751facb671441ca72715cc95938a" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.3+0" - [[deps.LaTeXStrings]] git-tree-sha1 = "dda21b8cbd6a6c40d9d02a73230f9d70fed6918c" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" @@ -1052,15 +1049,10 @@ version = "0.16.10" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" tectonic_jll = "d7dd28d6-a5e6-559c-9131-7eb760cdacc5" -[[deps.LayoutPointers]] -deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "a9eaadb366f5493a5654e843864c13d8b107548c" -uuid = "10f19ff3-798f-405d-979b-55457f8fc047" -version = "0.1.17" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" +version = "1.11.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] @@ -1070,16 +1062,17 @@ version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.4.0+0" +version = "8.6.0+0" [[deps.LibGit2]] deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +version = "1.11.0" [[deps.LibGit2_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.6.4+0" +version = "1.7.2+0" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] @@ -1088,6 +1081,7 @@ version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" +version = "1.11.0" [[deps.Libffi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1109,9 +1103,9 @@ version = "1.18.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "97bbca976196f2a1eb9607131cb108c69ec3f8a6" +git-tree-sha1 = "cc3ad4faf30015a3e8094c9b5b7f19e85bdf2386" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] @@ -1121,35 +1115,32 @@ version = "4.7.2+0" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d0205286d9eceadc518742860bf23f703779a3d6" +git-tree-sha1 = "d620582b1f0cbe2c72dd1d5bd195a9ce73370ab1" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.LineSearch]] deps = ["ADTypes", "CommonSolve", "ConcreteStructs", "FastClosures", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "SciMLBase", "SciMLJacobianOperators", "StaticArraysCore"] -git-tree-sha1 = "9f7253c0574b4b585c8909232adb890930da980a" +git-tree-sha1 = "fd58a77c92e7c8f1db25c9839127d52943a49349" uuid = "87fe0de2-c867-4266-b59a-2f0a94fc965b" -version = "0.1.6" -weakdeps = ["LineSearches"] +version = "0.1.9" [deps.LineSearch.extensions] LineSearchLineSearchesExt = "LineSearches" -[[deps.LineSearches]] -deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Printf"] -git-tree-sha1 = "738bdcacfef25b3a9e4a39c28613717a6b23751e" -uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.6.0" + [deps.LineSearch.weakdeps] + LineSearches = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +version = "1.11.0" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "86b5b25ca3b97d248133d055463c31ebc4de2bbb" +deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] +git-tree-sha1 = "42b5cb44317e89ef75dd841c9c8eba9045bf9ff0" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "3.65.0" +version = "3.75.0" [deps.LinearSolve.extensions] LinearSolveAMDGPUExt = "AMDGPU" @@ -1160,7 +1151,9 @@ version = "3.65.0" LinearSolveCUDAExt = "CUDA" LinearSolveCUDSSExt = "CUDSS" LinearSolveCUSOLVERRFExt = ["CUSOLVERRF", "SparseArrays"] + LinearSolveChainRulesCoreExt = "ChainRulesCore" LinearSolveCliqueTreesExt = ["CliqueTrees", "SparseArrays"] + LinearSolveElementalExt = "Elemental" LinearSolveEnzymeExt = ["EnzymeCore", "SparseArrays"] LinearSolveFastAlmostBandedMatricesExt = "FastAlmostBandedMatrices" LinearSolveFastLapackInterfaceExt = "FastLapackInterface" @@ -1172,7 +1165,9 @@ version = "3.65.0" LinearSolveKrylovKitExt = "KrylovKit" LinearSolveMetalExt = "Metal" LinearSolveMooncakeExt = "Mooncake" + LinearSolvePETScCSRExt = ["PETSc", "SparseArrays", "SparseMatricesCSR"] LinearSolvePETScExt = ["PETSc", "SparseArrays"] + LinearSolvePETScMPIExt = ["PETSc", "PartitionedArrays", "SparseArrays", "SparseMatricesCSR"] LinearSolveParUExt = ["ParU_jll", "SparseArrays"] LinearSolvePardisoExt = ["Pardiso", "SparseArrays"] LinearSolveRecursiveFactorizationExt = "RecursiveFactorization" @@ -1187,7 +1182,9 @@ version = "3.65.0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" CUSOLVERRF = "a8cc9031-bad2-4722-94f5-40deabb4245c" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" + Elemental = "902c3f28-d1ec-5e7e-8399-a24c3845ee38" EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" FastLapackInterface = "29a986be-02c6-4525-aec4-84b980013641" @@ -1203,8 +1200,10 @@ version = "3.65.0" PETSc = "ace2c81b-2b5f-4b1e-a30d-d662738edfe0" ParU_jll = "9e0b026c-e8ce-559c-a2c4-6a3d5c955bc9" Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" + PartitionedArrays = "5a9dfac6-5c52-46f7-8278-5e2210713be9" RecursiveFactorization = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseMatricesCSR = "a0a7dd2c-ebf4-11e9-1f05-cf50bc540ca1" Sparspak = "e56a9233-b9d6-4f03-8d0f-1825330902ac" blis_jll = "6136c539-28a5-5bf0-87cc-b183200dce32" @@ -1226,6 +1225,7 @@ version = "0.3.29" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" +version = "1.11.0" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] @@ -1244,14 +1244,10 @@ git-tree-sha1 = "1e0228a030642014fe5cfe68c2c0a818f9e3f522" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" version = "0.5.16" -[[deps.ManualMemory]] -git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" -uuid = "d125e4d3-2237-4719-b19c-fa641b8a4667" -version = "0.1.8" - [[deps.Markdown]] deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +version = "1.11.0" [[deps.MaybeInplace]] deps = ["ArrayInterface", "LinearAlgebra", "MacroTools"] @@ -1272,7 +1268,7 @@ version = "1.1.10" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.1010+0" +version = "2.28.6+0" [[deps.Measures]] git-tree-sha1 = "b513cedd20d9c914783d8ad83d08120702bf2c77" @@ -1287,12 +1283,13 @@ version = "1.2.0" [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" +version = "1.11.0" [[deps.ModelingToolkit]] -deps = ["ADTypes", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "ConstructionBase", "DataStructures", "DiffEqBase", "DifferentiationInterface", "DocStringExtensions", "FillArrays", "FindFirstFunctions", "ForwardDiff", "Graphs", "InteractiveUtils", "Libdl", "LinearAlgebra", "ModelingToolkitBase", "ModelingToolkitTearing", "Moshi", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "StateSelection", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] -git-tree-sha1 = "ee93ecc56a697f67b803789530aaa83cc0f9179e" +deps = ["ADTypes", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "ConstructionBase", "DataStructures", "DiffEqBase", "DifferentiationInterface", "DocStringExtensions", "FillArrays", "ForwardDiff", "Graphs", "InteractiveUtils", "Libdl", "LinearAlgebra", "ModelingToolkitBase", "ModelingToolkitTearing", "Moshi", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "StateSelection", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] +git-tree-sha1 = "8527fee82ed8dc6934827b447b0555674c3ba1be" uuid = "961ee093-0014-501f-94e3-6117800e7a78" -version = "11.16.0" +version = "11.24.1" [deps.ModelingToolkit.extensions] MTKFMIExt = "FMIImport" @@ -1307,10 +1304,10 @@ version = "11.16.0" OrdinaryDiffEqRosenbrock = "43230ef6-c299-4910-a778-202eb28ce4ce" [[deps.ModelingToolkitBase]] -deps = ["ADTypes", "AbstractTrees", "ArrayInterface", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffRules", "DifferentiationInterface", "DocStringExtensions", "DomainSets", "EnumX", "EnzymeCore", "ExprTools", "FillArrays", "FindFirstFunctions", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "ImplicitDiscreteSolve", "InteractiveUtils", "JumpProcesses", "Libdl", "LinearAlgebra", "Moshi", "NaNMath", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Random", "ReadOnlyDicts", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] -git-tree-sha1 = "fe505fcd3aa6fff18669127fdab602a3e7268e44" +deps = ["ADTypes", "AbstractTrees", "ArrayInterface", "BandedMatrices", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffRules", "DifferentiationInterface", "DocStringExtensions", "DomainSets", "EnumX", "EnzymeCore", "ExprTools", "FillArrays", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "ImplicitDiscreteSolve", "InteractiveUtils", "JumpProcesses", "Libdl", "LinearAlgebra", "Moshi", "NaNMath", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Random", "ReadOnlyDicts", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] +git-tree-sha1 = "d52da5508ed6c42b4e7c01356287d7114f3e13db" uuid = "7771a370-6774-4173-bd38-47e70ca0b839" -version = "1.23.0" +version = "1.33.1" [deps.ModelingToolkitBase.extensions] MTKBifurcationKitExt = "BifurcationKit" @@ -1340,9 +1337,9 @@ version = "1.23.0" [[deps.ModelingToolkitTearing]] deps = ["BipartiteGraphs", "CommonSolve", "DocStringExtensions", "Graphs", "LinearAlgebra", "ModelingToolkitBase", "Moshi", "OffsetArrays", "OrderedCollections", "SciMLBase", "Setfield", "SparseArrays", "StateSelection", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UUIDs"] -git-tree-sha1 = "c09ec15dc4a44810451222ddaf29f6f90dfb7530" +git-tree-sha1 = "3ad8028ba31ef212307586416f1b341b5e8d4eb9" uuid = "6bb917b9-1269-42b9-9f7c-b0dca72083ab" -version = "1.7.0" +version = "1.13.3" [[deps.Moshi]] deps = ["ExproniconLite", "Jieko"] @@ -1352,7 +1349,7 @@ version = "0.3.7" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2025.12.2" +version = "2023.12.12" [[deps.MuladdMacro]] git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" @@ -1360,10 +1357,10 @@ uuid = "46d2c3a1-f734-5fdb-9937-b9b9aeba4221" version = "0.2.4" [[deps.MultivariatePolynomials]] -deps = ["DataStructures", "LinearAlgebra", "MutableArithmetics"] -git-tree-sha1 = "139071bb741eeaa3ee7d4109f1299e9282882d79" +deps = ["DataStructures", "LinearAlgebra", "MutableArithmetics", "StarAlgebras"] +git-tree-sha1 = "4838893d9b035c2f6967c0d533350e1755b58a70" uuid = "102ac46a-7ee4-5c85-9060-abc95bfdeaa3" -version = "0.5.14" +version = "0.5.19" weakdeps = ["ChainRulesCore"] [deps.MultivariatePolynomials.extensions] @@ -1377,15 +1374,9 @@ version = "1.0.21" [[deps.MutableArithmetics]] deps = ["LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "22df8573f8e7c593ac205455ca088989d0a2c7a0" +git-tree-sha1 = "7c25249fc13a070f5ba433c50e21e22bb33c6fb0" uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" -version = "1.6.7" - -[[deps.NLSolversBase]] -deps = ["ADTypes", "DifferentiationInterface", "FiniteDiff", "LinearAlgebra"] -git-tree-sha1 = "b3f76b463c7998473062992b246045e6961a074e" -uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" -version = "8.0.0" +version = "1.7.1" [[deps.NaNMath]] deps = ["OpenLibm_jll"] @@ -1398,10 +1389,10 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.NonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SciMLLogging", "SimpleNonlinearSolve", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "d27bcf0cebf8786edcc2eaa4455c959e680334e7" +deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SciMLLogging", "Setfield", "SimpleNonlinearSolve", "StaticArraysCore", "SymbolicIndexingInterface"] +git-tree-sha1 = "ae0b0f875e4dfda538ab6977ec7939126ee9a1fe" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "4.16.0" +version = "4.19.0" [deps.NonlinearSolve.extensions] NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" @@ -1431,10 +1422,10 @@ version = "4.16.0" Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" [[deps.NonlinearSolveBase]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "LinearAlgebra", "LogExpFunctions", "Markdown", "MaybeInplace", "PreallocationTools", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "4f595a0977d6e048fa1e3c382b088b950f8c7934" +deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "LogExpFunctions", "Markdown", "MaybeInplace", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] +git-tree-sha1 = "a19a5df29ef2b197499fc631fa1a59385ae15262" uuid = "be0214bd-f91f-a760-ac4e-3421ce2b2da0" -version = "2.15.0" +version = "2.25.0" [deps.NonlinearSolveBase.extensions] NonlinearSolveBaseBandedMatricesExt = "BandedMatrices" @@ -1464,15 +1455,15 @@ version = "2.15.0" [[deps.NonlinearSolveFirstOrder]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConcreteStructs", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLJacobianOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "eea7cbe389b168c77df7ff779fb7277019c685c8" +git-tree-sha1 = "ce68820a4f421fb5bee7ec4dcf875aff33886bfb" uuid = "5959db7a-ea39-4486-b5fe-2dd0bf03d60d" -version = "2.0.0" +version = "2.1.1" [[deps.NonlinearSolveQuasiNewton]] deps = ["ArrayInterface", "CommonSolve", "ConcreteStructs", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLOperators", "StaticArraysCore"] -git-tree-sha1 = "ade27e8e9566b6cec63ee62f6a6650a11cf9a2eb" +git-tree-sha1 = "538432ca1aea8bf63db02929bf870501f8a7c64c" uuid = 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["Artifacts", "JLLWrappers", "Libdl", "OpenSSL_jll", "Zlib_jll"] -git-tree-sha1 = "301412a644646fdc0ad67d0a87487466b491e53d" +git-tree-sha1 = "57baa4b81a24c2910afbb6d853aa0685e4312bf7" uuid = "9bd350c2-7e96-507f-8002-3f2e150b4e1b" -version = "10.2.1+0" +version = "10.3.1+0" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "NetworkOptions", "OpenSSL_jll", "Sockets"] @@ -1527,9 +1518,9 @@ version = "1.6.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "c9cbeda6aceffc52d8a0017e71db27c7a7c0beaf" +git-tree-sha1 = "2ac022577e5eac7da040de17776d51bb770cd895" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.5.5+0" +version = "3.5.6+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -1549,28 +1540,22 @@ uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.8.1" [[deps.OrdinaryDiffEq]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "DataStructures", 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"RecursiveArrayTools", "Reexport", "SciMLBase"] +git-tree-sha1 = "d9b4c0113394ab960dcb0c44d80bfd3bf4722a06" uuid = "fa646aed-7ef9-47eb-84c4-9443fc8cbfa8" -version = "1.11.0" +version = "2.0.0" [[deps.OrdinaryDiffEqTaylorSeries]] -deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static", "SymbolicUtils", "Symbolics", "TaylorDiff", "TruncatedStacktraces"] -git-tree-sha1 = "91d50e7a4ef7d5d347ee1ee9e4c567d9c227c037" +deps = ["DiffEqBase", "FastBroadcast", "FunctionWrappers", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SymbolicUtils", "Symbolics", "TaylorDiff", "TruncatedStacktraces"] +git-tree-sha1 = "cb71d3ba9dc1282c3c40cdcb7f947142ab072e2c" uuid = "9c7f1690-dd92-42a3-8318-297ee24d8d39" -version = "1.10.0" +version = "2.0.0" [[deps.OrdinaryDiffEqTsit5]] -deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static", "TruncatedStacktraces"] -git-tree-sha1 = "8be4cba85586cd2efa6c76d1792c548758610901" +deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "d9cedcfa2cdae8859b4510b9d01ada9852cd6d9d" uuid = "b1df2697-797e-41e3-8120-5422d3b24e4a" -version = "1.9.0" +version = "2.0.0" [[deps.OrdinaryDiffEqVerner]] -deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static", "TruncatedStacktraces"] -git-tree-sha1 = "5ca5dbbfea89e14f283ce9fe2301c528ff4ec007" +deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "fb8ae6a290beed2ef61fa2e7571d921e1100c365" uuid = "79d7bb75-1356-48c1-b8c0-6832512096c2" -version = "1.11.0" +version = "2.0.0" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -1759,15 +1641,15 @@ version = "10.42.0+1" [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "0662b083e11420952f2e62e17eddae7fc07d5997" +git-tree-sha1 = "58e5ed5e386e156bd93e86b305ebd21ac63d2d04" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" -version = "1.57.0+0" +version = "1.57.1+0" [[deps.ParameterizedFunctions]] deps = ["DataStructures", "DiffEqBase", "DocStringExtensions", "Latexify", "LinearAlgebra", "ModelingToolkit", "ModelingToolkitBase", "Reexport", "SciMLBase", "SymbolicUtils", "Symbolics"] -git-tree-sha1 = "a09136faf71469ce2545949c8466ab46f3878cb7" +git-tree-sha1 = "42fd879e2e662070397bd067a94ce9c98f8353f0" uuid = "65888b18-ceab-5e60-b2b9-181511a3b968" -version = "5.22.0" +version = "5.24.0" [[deps.Parameters]] deps = ["OrderedCollections", "UnPack"] @@ -1777,9 +1659,9 @@ version = "0.12.3" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "7d2f8f21da5db6a806faf7b9b292296da42b2810" +git-tree-sha1 = "5d5e0a78e971354b1c7bff0655d11fdc1b0e12c8" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.3" +version = "2.8.4" [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] @@ -1788,9 +1670,13 @@ uuid = "30392449-352a-5448-841d-b1acce4e97dc" version = "0.44.2+0" [[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.10.0" +version = "1.11.0" +weakdeps = ["REPL"] + + [deps.Pkg.extensions] + REPLExt = "REPL" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1830,23 +1716,11 @@ git-tree-sha1 = "67afbcbe9e184d6729a92a022147ed4cf972ca7b" uuid = "e409e4f3-bfea-5376-8464-e040bb5c01ab" version = "0.4.7" -[[deps.Polyester]] -deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "16bbc30b5ebea91e9ce1671adc03de2832cff552" -uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.19" - -[[deps.PolyesterWeave]] -deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] -git-tree-sha1 = "645bed98cd47f72f67316fd42fc47dee771aefcd" -uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad" -version = "0.2.2" - [[deps.PreallocationTools]] deps = ["Adapt", "ArrayInterface", "PrecompileTools"] -git-tree-sha1 = "dc8d6bde5005a0eac05ae8faf1eceaaca166cfa4" +git-tree-sha1 = "e16b73bf892c55d16d53c9c0dbd0fb31cb7e25da" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "1.1.2" +version = "1.2.0" [deps.PreallocationTools.extensions] PreallocationToolsForwardDiffExt = "ForwardDiff" @@ -1879,6 +1753,7 @@ version = "0.5.7" [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" +version = "1.11.0" [[deps.PtrArrays]] git-tree-sha1 = "4fbbafbc6251b883f4d2705356f3641f3652a7fe" @@ -1916,12 +1791,14 @@ uuid = "e99dba38-086e-5de3-a5b1-6e4c66e897c3" version = "6.10.2+1" [[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" +version = "1.11.0" [[deps.Random]] deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +version = "1.11.0" [[deps.ReadOnlyArrays]] git-tree-sha1 = "e6f7ddf48cf141cb312b078ca21cb2d29d0dc11d" @@ -1954,16 +1831,19 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "LinearAlgebra", "PrecompileTools", "RecipesBase", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "18d2a6fd1ea9a8205cadb3a5704f8e51abdd748b" +git-tree-sha1 = "57b6fb3932fc8d1fc911f840d2c9de5fe3ba5008" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.48.0" +version = "4.3.0" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsCUDAExt = "CUDA" RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsFastBroadcastPolyesterExt = ["FastBroadcast", "Polyester"] RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsKernelAbstractionsExt = "KernelAbstractions" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsMooncakeExt = "Mooncake" RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] RecursiveArrayToolsStatisticsExt = "Statistics" @@ -1973,11 +1853,14 @@ version = "3.48.0" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" @@ -2005,15 +1888,15 @@ version = "1.3.1" [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "7257165d5477fd1025f7cb656019dcb6b0512c38" +git-tree-sha1 = "cfcdc949c4660544ab0fdeed169561cb22f835f4" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.17" +version = "0.5.18" [[deps.SCCNonlinearSolve]] deps = ["CommonSolve", "PrecompileTools", "Reexport", "SciMLBase", "SymbolicIndexingInterface"] -git-tree-sha1 = "b1fed39f2acdd4524c17b50ce6f4406be61b936d" +git-tree-sha1 = "521a298294a6fd11068df0148b4d57bb31550453" uuid = "9dfe8606-65a1-4bb3-9748-cb89d1561431" -version = "1.11.0" +version = "1.13.0" weakdeps = ["ChainRulesCore"] [deps.SCCNonlinearSolve.extensions] @@ -2023,16 +1906,11 @@ weakdeps = ["ChainRulesCore"] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" -[[deps.SIMDTypes]] -git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" -uuid = "94e857df-77ce-4151-89e5-788b33177be4" -version = "0.1.0" - [[deps.SciMLBase]] -deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Moshi", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "8787e28326c99b0c9c706b51da525ad09d03c56f" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "Random", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] +git-tree-sha1 = "450a8405f96d0a7c6caabed0852def06ba8c6bf1" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.149.0" +version = "3.7.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2040,7 +1918,6 @@ version = "2.149.0" SciMLBaseDistributionsExt = "Distributions" SciMLBaseEnzymeExt = "Enzyme" SciMLBaseForwardDiffExt = "ForwardDiff" - SciMLBaseMLStyleExt = "MLStyle" SciMLBaseMakieExt = "Makie" SciMLBaseMeasurementsExt = "Measurements" SciMLBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" @@ -2060,7 +1937,6 @@ version = "2.149.0" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - MLStyle = "d8e11817-5142-5d16-987a-aa16d5891078" Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" @@ -2081,9 +1957,9 @@ version = "0.1.3" [[deps.SciMLJacobianOperators]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DifferentiationInterface", "FastClosures", "LinearAlgebra", "SciMLBase", "SciMLOperators"] -git-tree-sha1 = "e96d5e96debf7f80a50d0b976a13dea556ccfd3a" +git-tree-sha1 = "7156a5b51cba1bea33a82a036939ead4131f92bc" uuid = "19f34311-ddf3-4b8b-af20-060888a46c0e" -version = "0.1.12" +version = "0.1.13" [[deps.SciMLLogging]] deps = ["Logging", "LoggingExtras", "Preferences"] @@ -2099,9 +1975,9 @@ version = "1.9.1" [[deps.SciMLOperators]] deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra"] -git-tree-sha1 = "794c760e6aafe9f40dcd7dd30526ea33f0adc8b7" +git-tree-sha1 = "0e34162268883db01c04f988895a80d0659071bb" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "1.15.1" +version = "1.17.0" weakdeps = ["SparseArrays", "StaticArraysCore"] [deps.SciMLOperators.extensions] @@ -2127,6 +2003,7 @@ version = "1.3.0" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" +version = "1.11.0" [[deps.Setfield]] deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] @@ -2147,9 +2024,9 @@ version = "1.2.0" [[deps.SimpleNonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "744c3f0fb186ad28376199c1e72ca39d0c614b5d" +git-tree-sha1 = "d688de789b7e643326caf9a1051376dadbcd8873" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "2.11.0" +version = "2.11.1" [deps.SimpleNonlinearSolve.extensions] SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" @@ -2169,6 +2046,7 @@ version = "0.9.5" [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" +version = "1.11.0" [[deps.SortingAlgorithms]] deps = ["DataStructures"] @@ -2179,7 +2057,7 @@ version = "1.2.2" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -version = "1.10.0" +version = "1.11.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] @@ -2189,28 +2067,31 @@ version = "0.1.2" [[deps.SparseMatrixColorings]] deps = ["ADTypes", "DocStringExtensions", "LinearAlgebra", "PrecompileTools", "Random", "SparseArrays"] -git-tree-sha1 = "7b2263c87aa890bf6d18ae05cedbe259754e3f34" +git-tree-sha1 = "f63d76c7b7c329cf11badd564fd8ba877b09c3fe" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.4.24" +version = "0.4.27" [deps.SparseMatrixColorings.extensions] - SparseMatrixColoringsCUDAExt = "CUDA" + SparseMatrixColoringsCUDAExt = ["CUDA", "cuSPARSE"] SparseMatrixColoringsCliqueTreesExt = "CliqueTrees" SparseMatrixColoringsColorsExt = "Colors" + SparseMatrixColoringsGPUArraysExt = "GPUArrays" SparseMatrixColoringsJuMPExt = ["JuMP", "MathOptInterface"] [deps.SparseMatrixColorings.weakdeps] CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" + GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" JuMP = "4076af6c-e467-56ae-b986-b466b2749572" MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" + cuSPARSE = "b26da814-b3bc-49ef-b0ee-c816305aa060" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "5acc6a41b3082920f79ca3c759acbcecf18a8d78" +git-tree-sha1 = "2700b235561b0335d5bef7097a111dc513b8655e" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.7.1" +version = "2.7.2" weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] @@ -2222,11 +2103,17 @@ git-tree-sha1 = "4f96c596b8c8258cc7d3b19797854d368f243ddc" uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" version = "1.0.4" +[[deps.StarAlgebras]] +deps = ["LinearAlgebra", "MutableArithmetics", "SparseArrays"] +git-tree-sha1 = "235b1f9d287bbf34083b3d0829343a7942c0ad1c" +uuid = "0c0c59c1-dc5f-42e9-9a8b-b5dc384a6cd1" +version = "0.3.0" + [[deps.StateSelection]] deps = ["BipartiteGraphs", "DocStringExtensions", "FindFirstFunctions", "Graphs", "LinearAlgebra", "OrderedCollections", "Setfield", "SparseArrays"] -git-tree-sha1 = "df66e4914036af4285f6cb9f744dd8d2736e7c41" +git-tree-sha1 = "824641f6d414f0885200e034e3853c3c2f61ac43" uuid = "64909d44-ed92-46a8-bbd9-f047dfbdc84b" -version = "1.5.0" +version = "1.9.2" [deps.StateSelection.extensions] StateSelectionDeepDiffsExt = "DeepDiffs" @@ -2234,23 +2121,6 @@ version = "1.5.0" [deps.StateSelection.weakdeps] DeepDiffs = "ab62b9b5-e342-54a8-a765-a90f495de1a6" -[[deps.Static]] -deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools", "SciMLPublic"] -git-tree-sha1 = "49440414711eddc7227724ae6e570c7d5559a086" -uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.3.1" - -[[deps.StaticArrayInterface]] -deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "SciMLPublic", "Static"] -git-tree-sha1 = "aa1ea41b3d45ac449d10477f65e2b40e3197a0d2" -uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.9.0" -weakdeps = ["OffsetArrays", "StaticArrays"] - - [deps.StaticArrayInterface.extensions] - StaticArrayInterfaceOffsetArraysExt = "OffsetArrays" - StaticArrayInterfaceStaticArraysExt = "StaticArrays" - [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] git-tree-sha1 = "246a8bb2e6667f832eea063c3a56aef96429a3db" @@ -2268,9 +2138,14 @@ uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" version = "1.4.4" [[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] +deps = ["LinearAlgebra"] +git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.10.0" +version = "1.11.1" +weakdeps = ["SparseArrays"] + + [deps.Statistics.extensions] + SparseArraysExt = ["SparseArrays"] [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -2284,12 +2159,6 @@ git-tree-sha1 = "aceda6f4e598d331548e04cc6b2124a6148138e3" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" version = "0.34.10" -[[deps.StrideArraysCore]] -deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "83151ba8065a73f53ca2ae98bc7274d817aa30f2" -uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.5.8" - [[deps.StringEncodings]] deps = ["Libiconv_jll"] git-tree-sha1 = "b765e46ba27ecf6b44faf70df40c57aa3a547dcb" @@ -2298,9 +2167,9 @@ version = "0.3.7" [[deps.StructArrays]] deps = ["ConstructionBase", "DataAPI", "Tables"] -git-tree-sha1 = "a2c37d815bf00575332b7bd0389f771cb7987214" +git-tree-sha1 = "ad8002667372439f2e3611cfd14097e03fa4bccd" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.7.2" +version = "0.7.3" [deps.StructArrays.extensions] StructArraysAdaptExt = "Adapt" @@ -2317,6 +2186,10 @@ version = "0.7.2" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" + [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" @@ -2324,7 +2197,7 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "7.2.1+1" +version = "7.7.0+0" [[deps.SymbolicIndexingInterface]] deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] @@ -2345,10 +2218,10 @@ uuid = "19f23fe9-fdab-4a78-91af-e7b7767979c3" version = "1.1.0" [[deps.SymbolicUtils]] -deps = ["AbstractTrees", "ArrayInterface", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "EnumX", "ExproniconLite", "LinearAlgebra", "MacroTools", "Moshi", "MultivariatePolynomials", "MutableArithmetics", "NaNMath", "PrecompileTools", "ReadOnlyArrays", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "TaskLocalValues", "TermInterface", "WeakCacheSets"] -git-tree-sha1 = "16eaca1bf86172d26913398958bc346d0861ac80" +deps = ["AbstractTrees", "ArrayInterface", "Combinatorics", "ConstructionBase", "DataStructures", "Dictionaries", "DocStringExtensions", "DynamicPolynomials", "EnumX", "ExproniconLite", "Graphs", "LinearAlgebra", "MacroTools", "Moshi", "MultivariatePolynomials", "MutableArithmetics", "NaNMath", "PrecompileTools", "ReadOnlyArrays", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "TaskLocalValues", "TermInterface", "WeakCacheSets"] +git-tree-sha1 = "ae8741c34009171ee8e46d5c209cf0a15c469928" uuid = "d1185830-fcd6-423d-90d6-eec64667417b" -version = "4.20.1" +version = "4.26.0" [deps.SymbolicUtils.extensions] SymbolicUtilsChainRulesCoreExt = "ChainRulesCore" @@ -2364,9 +2237,9 @@ version = "4.20.1" [[deps.Symbolics]] deps = ["ADTypes", "AbstractPlutoDingetjes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "Moshi", "MultivariatePolynomials", "MutableArithmetics", "NaNMath", "PrecompileTools", "Preferences", "Primes", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLPublic", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] -git-tree-sha1 = "02687bc18b509620a6472cc90f65da9d3f885a2f" +git-tree-sha1 = "85bb4be51a7e90e531b1faa926b9497f436ca535" uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7" -version = "7.15.3" +version = "7.21.0" [deps.Symbolics.extensions] SymbolicsD3TreesExt = "D3Trees" @@ -2439,24 +2312,25 @@ version = "0.3.5" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.TaylorIntegration]] -deps = ["DiffEqBase", "Espresso", "InteractiveUtils", "LinearAlgebra", "Markdown", "Parameters", "RecursiveArrayTools", "Reexport", "StaticArrays", "TaylorSeries"] -git-tree-sha1 = "38ed42dcf490c97a9b5f881cf0fc5fc67ca7e53a" +deps = ["Espresso", "InteractiveUtils", "LinearAlgebra", "Markdown", "Parameters", "RecursiveArrayTools", "Reexport", "StaticArrays", "TaylorSeries"] +git-tree-sha1 = "5d601f93830a843b63aa51491a797942a8d7dbaf" uuid = "92b13dbe-c966-51a2-8445-caca9f8a7d42" -version = "0.18.3" +version = "0.18.4" [deps.TaylorIntegration.extensions] - TaylorIntegrationDiffEqExt = "OrdinaryDiffEq" + TaylorIntegrationDiffEqExt = ["DiffEqBase", "OrdinaryDiffEqCore"] TaylorIntegrationIAExt = "IntervalArithmetic" [deps.TaylorIntegration.weakdeps] + DiffEqBase = "2b5f629d-d688-5b77-993f-72d75c75574e" IntervalArithmetic = "d1acc4aa-44c8-5952-acd4-ba5d80a2a253" - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" + OrdinaryDiffEqCore = "bbf590c4-e513-4bbe-9b18-05decba2e5d8" [[deps.TaylorSeries]] deps = ["FixedSizeArrays", "LinearAlgebra", "Markdown", "Reexport", "SparseArrays"] -git-tree-sha1 = "88c4d79aac1bbe7465373d8469710b046ad9930c" +git-tree-sha1 = "e97b2b85c3b31fbc6350c0889975152e1c64a0f8" uuid = "6aa5eb33-94cf-58f4-a9d0-e4b2c4fc25ea" -version = "0.21.2" +version = "0.21.6" [deps.TaylorSeries.extensions] TaylorSeriesIAExt = "IntervalArithmetic" @@ -2484,12 +2358,7 @@ version = "2.0.0" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.ThreadingUtilities]] -deps = ["ManualMemory"] -git-tree-sha1 = "d969183d3d244b6c33796b5ed01ab97328f2db85" -uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" -version = "0.5.5" +version = "1.11.0" [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] @@ -2522,6 +2391,7 @@ version = "1.6.1" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +version = "1.11.0" [[deps.UnPack]] git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" @@ -2530,6 +2400,7 @@ version = "1.0.2" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +version = "1.11.0" [[deps.UnicodeFun]] deps = ["REPL"] @@ -2572,9 +2443,9 @@ version = "0.10.12" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "9cce64c0fdd1960b597ba7ecda2950b5ed957438" +git-tree-sha1 = "b29c22e245d092b8b4e8d3c09ad7baa586d9f573" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.8.2+0" +version = "5.8.3+0" [[deps.Xorg_libICE_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2650,9 +2521,9 @@ version = "0.9.12+0" [[deps.Xorg_libpciaccess_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "4909eb8f1cbf6bd4b1c30dd18b2ead9019ef2fad" +git-tree-sha1 = "58972370b81423fc546c56a60ed1a009450177c3" uuid = "a65dc6b1-eb27-53a1-bb3e-dea574b5389e" -version = "0.18.1+0" +version = "0.19.0+0" [[deps.Xorg_libxcb_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXau_jll", "Xorg_libXdmcp_jll"] @@ -2710,9 +2581,9 @@ version = "1.4.7+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "00af7ebdc563c9217ecc67776d1bbf037dbcebf4" +git-tree-sha1 = "429722587208f02b1cecbddcd20133df2f1ed796" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.44.0+0" +version = "2.47.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2763,9 +2634,9 @@ version = "0.61.1+0" [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" +git-tree-sha1 = "850b06095ee71f0135d644ffd8a52850699581ed" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.13.1+0" +version = "3.13.3+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] @@ -2810,9 +2681,9 @@ version = "1.28.1+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" +git-tree-sha1 = "e51150d5ab85cee6fc36726850f0e627ad2e4aba" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.55+0" +version = "1.6.58+0" [[deps.libsodium_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2841,7 +2712,7 @@ version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.52.0+1" +version = "1.59.0+0" [[deps.oneTBB_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] @@ -2852,7 +2723,7 @@ version = "2022.0.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.6.1+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] diff --git a/benchmarks/DynamicalODE/Project.toml b/benchmarks/DynamicalODE/Project.toml index c20522531..9cbb1a3df 100644 --- a/benchmarks/DynamicalODE/Project.toml +++ b/benchmarks/DynamicalODE/Project.toml @@ -4,6 +4,8 @@ DiffEqPhysics = "055956cb-9e8b-5191-98cc-73ae4a59e68a" Elliptic = "b305315f-e792-5b7a-8f41-49f472929428" LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" +OrdinaryDiffEqRKN = "af6ede74-add8-4cfd-b1df-9a4dbb109d7a" +OrdinaryDiffEqSymplecticRK = "fa646aed-7ef9-47eb-84c4-9443fc8cbfa8" OrdinaryDiffEqTaylorSeries = "9c7f1690-dd92-42a3-8318-297ee24d8d39" ParameterizedFunctions = "65888b18-ceab-5e60-b2b9-181511a3b968" Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" @@ -17,8 +19,10 @@ TaylorIntegration = "92b13dbe-c966-51a2-8445-caca9f8a7d42" DiffEqCallbacks = "4.2.2" DiffEqPhysics = "3.2" Elliptic = "1.0" -OrdinaryDiffEq = "6" -OrdinaryDiffEqTaylorSeries = "1.10" +OrdinaryDiffEq = "7" +OrdinaryDiffEqRKN = "2" +OrdinaryDiffEqSymplecticRK = "2" +OrdinaryDiffEqTaylorSeries = "2" ParameterizedFunctions = "5.3" Plots = "1.4" SciMLBenchmarks = "0.1" diff --git a/benchmarks/DynamicalODE/Quadrupole_boson_Hamiltonian_energy_conservation_benchmark.jmd b/benchmarks/DynamicalODE/Quadrupole_boson_Hamiltonian_energy_conservation_benchmark.jmd index c3d5044ed..2b1b956b1 100644 --- a/benchmarks/DynamicalODE/Quadrupole_boson_Hamiltonian_energy_conservation_benchmark.jmd +++ b/benchmarks/DynamicalODE/Quadrupole_boson_Hamiltonian_energy_conservation_benchmark.jmd @@ -12,6 +12,7 @@ The aim of this benchmark is to see what happens with the energy error when high ```julia using OrdinaryDiffEq, Plots, DiffEqCallbacks, LinearAlgebra +using OrdinaryDiffEqRKN, OrdinaryDiffEqSymplecticRK using OrdinaryDiffEqTaylorSeries using TaylorIntegration using ParameterizedFunctions diff --git a/benchmarks/DynamicalODE/single_pendulums.jmd b/benchmarks/DynamicalODE/single_pendulums.jmd index c01923e7c..e9c0c88ed 100644 --- a/benchmarks/DynamicalODE/single_pendulums.jmd +++ b/benchmarks/DynamicalODE/single_pendulums.jmd @@ -39,6 +39,7 @@ $$y(t) = \sin(q(t)/2) = k\,\mathrm{sn}(t,k), \quad y_{\max} = k.$$ # Single pendulums shall be solved numerically. # using OrdinaryDiffEq, Elliptic, Printf, DiffEqPhysics, Statistics +using OrdinaryDiffEqSymplecticRK sol2q(sol) = [sol.u[i][j] for i in 1:length(sol.u), j in 1:(length(sol.u[1]) ÷ 2)] function sol2p(sol) diff --git a/benchmarks/GlobalOptimization/Manifest.toml b/benchmarks/GlobalOptimization/Manifest.toml index 72f86a362..c37ef2120 100644 --- a/benchmarks/GlobalOptimization/Manifest.toml +++ b/benchmarks/GlobalOptimization/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.10" +julia_version = "1.11.9" manifest_format = "2.0" -project_hash = "76ea4e510f3650c0bc87efebc9152499acad21d5" +project_hash = "f2550a86b87d9937850c74f53042eb559228450d" [[deps.ADTypes]] -git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" +git-tree-sha1 = "bbc22a9a08a0ef6460041086d8a7b27940ed4ffd" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.21.0" +version = "1.22.0" [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" @@ -32,9 +32,9 @@ version = "0.4.5" [[deps.Accessors]] deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] -git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +git-tree-sha1 = "2eeb2c9bef11013efc6f8f97f32ee59b146b09fb" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.43" +version = "0.1.44" [deps.Accessors.extensions] AxisKeysExt = "AxisKeys" @@ -56,9 +56,9 @@ version = "0.1.43" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "35ea197a51ce46fcd01c4a44befce0578a1aaeca" +git-tree-sha1 = "0761717147821d696c9470a7a86364b2fbd22fd8" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.5.0" +version = "4.5.2" [deps.Adapt.extensions] AdaptSparseArraysExt = "SparseArrays" @@ -76,13 +76,13 @@ version = "1.1.3" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "78b3a7a536b4b0a747a0f296ea77091ca0a9f9a3" +git-tree-sha1 = "54f895554d05c83e3dd59f6a396671dae8999573" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.23.0" +version = "7.24.0" [deps.ArrayInterface.extensions] ArrayInterfaceAMDGPUExt = "AMDGPU" @@ -116,15 +116,11 @@ version = "7.23.0" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +version = "1.11.0" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.BenchmarkTools]] -deps = ["Compat", "JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"] -git-tree-sha1 = "7fecfb1123b8d0232218e2da0c213004ff15358d" -uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" -version = "1.6.3" +version = "1.11.0" [[deps.BitFlags]] git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" @@ -156,16 +152,16 @@ uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" version = "0.5.0" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d0efe2c6fdcdaa1c161d206aa8b933788397ec71" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.5+1" +version = "1.18.6+0" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" +git-tree-sha1 = "12177ad6b3cad7fd50c8b3825ce24a99ad61c18f" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.26.0" +version = "1.26.1" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] @@ -194,13 +190,11 @@ deps = ["FixedPointNumbers", "Random"] git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" version = "0.12.1" +weakdeps = ["StyledStrings"] [deps.ColorTypes.extensions] StyledStringsExt = "StyledStrings" - [deps.ColorTypes.weakdeps] - StyledStrings = "f489334b-da3d-4c2e-b8f0-e476e12c162b" - [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" @@ -308,9 +302,9 @@ version = "1.16.0" [[deps.DataStructures]] deps = ["OrderedCollections"] -git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" +git-tree-sha1 = "e86f4a2805f7f19bec5129bc9150c38208e5dc23" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.19.3" +version = "0.19.4" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -320,6 +314,7 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" [[deps.Dbus_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] @@ -347,9 +342,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +git-tree-sha1 = "d0250552e42bf7cc36479fd38a6e30004c9e8c2b" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.7.16" +version = "0.7.17" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -359,7 +354,7 @@ version = "0.7.16" DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] - DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGPUArraysCoreExt = ["GPUArraysCore", "Adapt"] DifferentiationInterfaceGTPSAExt = "GTPSA" DifferentiationInterfaceMooncakeExt = "Mooncake" DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] @@ -373,6 +368,7 @@ version = "0.7.16" DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] [deps.DifferentiationInterface.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" @@ -409,12 +405,13 @@ weakdeps = ["ChainRulesCore", "SparseArrays"] [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" +git-tree-sha1 = "e421c1938fafab0165b04dc1a9dbe2a26272952c" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.123" +version = "0.25.125" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -461,9 +458,9 @@ version = "0.1.11" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "27af30de8b5445644e8ffe3bcb0d72049c089cf1" +git-tree-sha1 = "8f05e9a2e7c2e3eb524102bb2926c5743c07fbe1" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.7.3+0" +version = "2.8.0+0" [[deps.ExprTools]] git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" @@ -483,9 +480,9 @@ version = "0.4.5" [[deps.FFMPEG_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libva_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "66381d7059b5f3f6162f28831854008040a4e905" +git-tree-sha1 = "cac41ca6b2d399adfc95e51240566f8a60a80806" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "8.0.1+1" +version = "8.1.0+0" [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" @@ -494,6 +491,7 @@ version = "0.3.2" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" +version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] @@ -515,9 +513,9 @@ version = "1.16.0" [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "9340ca07ca27093ff68418b7558ca37b05f8aeb1" +git-tree-sha1 = "f7017a4f337f8df189fcce98e32b67a1298a2115" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.29.0" +version = "2.31.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -550,9 +548,9 @@ version = "1.3.7" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "eef4c86803f47dcb61e9b8790ecaa96956fdd8ae" +git-tree-sha1 = "cddeab6487248a39dae1a960fff0ac17b2a28888" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "1.3.2" +version = "1.3.3" [deps.ForwardDiff.extensions] ForwardDiffStaticArraysExt = "StaticArrays" @@ -562,9 +560,9 @@ version = "1.3.2" [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "2c5512e11c791d1baed2049c5652441b28fc6a31" +git-tree-sha1 = "70329abc09b886fd2c5d94ad2d9527639c421e3e" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.4+0" +version = "2.14.3+1" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -578,10 +576,19 @@ uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" version = "1.1.3" [[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +deps = ["FunctionWrappers", "PrecompileTools", "TruncatedStacktraces"] +git-tree-sha1 = "c1b0c3a166a2a393257aa888787ca817532e14ce" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" +version = "1.8.0" + + [deps.FunctionWrappersWrappers.extensions] + FunctionWrappersWrappersEnzymeExt = ["Enzyme", "EnzymeCore"] + FunctionWrappersWrappersMooncakeExt = "Mooncake" + + [deps.FunctionWrappersWrappers.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" [[deps.Functors]] deps = ["Compat", "ConstructionBase", "LinearAlgebra", "Random"] @@ -592,12 +599,13 @@ version = "0.5.2" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" +version = "1.11.0" [[deps.GLFW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] -git-tree-sha1 = "b7bfd56fa66616138dfe5237da4dc13bbd83c67f" +git-tree-sha1 = "9e0fb9e54594c47f278d75063980e43066e26e20" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.4.1+0" +version = "3.4.1+1" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -647,9 +655,9 @@ version = "3.7.0+0" [[deps.Git_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "dc34a3e3d96b4ed305b641e626dc14c12b7824b8" +git-tree-sha1 = "0dd4cfb426924210c8f42742751cbde74b27bfa3" uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb" -version = "2.53.0+0" +version = "2.54.0+0" [[deps.Glib_jll]] deps = ["Artifacts", "GettextRuntime_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] @@ -709,6 +717,7 @@ version = "1.34.4" [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" +version = "1.11.0" [[deps.InverseFunctions]] git-tree-sha1 = "a779299d77cd080bf77b97535acecd73e1c5e5cb" @@ -774,9 +783,9 @@ version = "0.2.1" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "b6893345fd6658c8e475d40155789f4860ac3b21" +git-tree-sha1 = "c0c9b76f3520863909825cbecdef58cd63de705a" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.1.4+0" +version = "3.1.5+0" [[deps.Krylov]] deps = ["LinearAlgebra", "Printf", "SparseArrays"] @@ -792,15 +801,15 @@ version = "3.100.3+0" [[deps.LDLFactorizations]] deps = ["AMD", "LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "70f582b446a1c3ad82cf87e62b878668beef9d13" +git-tree-sha1 = "d75c5cb8d6ac9c359ae9eb8e87e446ba9f221dd4" uuid = "40e66cde-538c-5869-a4ad-c39174c6795b" -version = "0.10.1" +version = "0.10.2" [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "aaafe88dccbd957a8d82f7d05be9b69172e0cee3" +git-tree-sha1 = "17b94ecafcfa45e8360a4fc9ca6b583b049e4e37" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "4.0.1+0" +version = "4.1.0+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -808,12 +817,6 @@ git-tree-sha1 = "eb62a3deb62fc6d8822c0c4bef73e4412419c5d8" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" version = "18.1.8+0" -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "1c602b1127f4751facb671441ca72715cc95938a" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.3+0" - [[deps.LaTeXStrings]] git-tree-sha1 = "dda21b8cbd6a6c40d9d02a73230f9d70fed6918c" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" @@ -840,6 +843,7 @@ version = "0.16.10" [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" +version = "1.11.0" [[deps.LeftChildRightSiblingTrees]] deps = ["AbstractTrees"] @@ -855,16 +859,17 @@ version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.4.0+0" +version = "8.6.0+0" [[deps.LibGit2]] deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +version = "1.11.0" [[deps.LibGit2_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.6.4+0" +version = "1.7.2+0" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] @@ -873,6 +878,7 @@ version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" +version = "1.11.0" [[deps.Libffi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -894,9 +900,9 @@ version = "1.18.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "97bbca976196f2a1eb9607131cb108c69ec3f8a6" +git-tree-sha1 = "cc3ad4faf30015a3e8094c9b5b7f19e85bdf2386" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] @@ -906,9 +912,9 @@ version = "4.7.2+0" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d0205286d9eceadc518742860bf23f703779a3d6" +git-tree-sha1 = "d620582b1f0cbe2c72dd1d5bd195a9ce73370ab1" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.LineSearches]] deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Printf"] @@ -919,6 +925,7 @@ version = "7.5.1" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +version = "1.11.0" [[deps.LinearOperators]] deps = ["FastClosures", "LinearAlgebra", "Printf", "SparseArrays", "TimerOutputs"] @@ -960,6 +967,7 @@ version = "0.3.29" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" +version = "1.11.0" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] @@ -975,12 +983,21 @@ version = "0.5.16" [[deps.Markdown]] deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +version = "1.11.0" [[deps.MathOptInterface]] -deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test"] -git-tree-sha1 = "7fb98657926ccb4de8f9bb96cda453700ca39a8b" +deps = ["CodecBzip2", "CodecZlib", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test"] +git-tree-sha1 = "73939c06e863f8d68322106fdc2464f3443b5e1a" uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" -version = "1.49.0" +version = "1.51.0" + + [deps.MathOptInterface.extensions] + MathOptInterfaceBenchmarkToolsExt = "BenchmarkTools" + MathOptInterfaceCliqueTreesExt = "CliqueTrees" + + [deps.MathOptInterface.weakdeps] + BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" [[deps.MbedTLS]] deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] @@ -991,7 +1008,7 @@ version = "1.1.10" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+1" +version = "2.28.6+0" [[deps.Measures]] git-tree-sha1 = "b513cedd20d9c914783d8ad83d08120702bf2c77" @@ -1024,6 +1041,7 @@ version = "1.2.0" [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" +version = "1.11.0" [[deps.Moshi]] deps = ["ExproniconLite", "Jieko"] @@ -1033,7 +1051,7 @@ version = "0.3.7" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2023.1.10" +version = "2023.12.12" [[deps.Mustache]] deps = ["Printf", "Tables"] @@ -1043,9 +1061,9 @@ version = "1.0.21" [[deps.MutableArithmetics]] deps = ["LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "22df8573f8e7c593ac205455ca088989d0a2c7a0" +git-tree-sha1 = "7c25249fc13a070f5ba433c50e21e22bb33c6fb0" uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" -version = "1.6.7" +version = "1.7.1" [[deps.NLSolversBase]] deps = ["ADTypes", "DifferentiationInterface", "Distributed", "FiniteDiff", "ForwardDiff"] @@ -1109,7 +1127,7 @@ version = "1.3.6+0" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.23+4" +version = "0.3.27+1" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] @@ -1118,9 +1136,9 @@ version = "0.8.5+0" [[deps.OpenSSH_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "OpenSSL_jll", "Zlib_jll"] -git-tree-sha1 = "301412a644646fdc0ad67d0a87487466b491e53d" +git-tree-sha1 = "57baa4b81a24c2910afbb6d853aa0685e4312bf7" uuid = "9bd350c2-7e96-507f-8002-3f2e150b4e1b" -version = "10.2.1+0" +version = "10.3.1+0" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "NetworkOptions", "OpenSSL_jll", "Sockets"] @@ -1130,9 +1148,9 @@ version = "1.6.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "c9cbeda6aceffc52d8a0017e71db27c7a7c0beaf" +git-tree-sha1 = "2ac022577e5eac7da040de17776d51bb770cd895" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.5.5+0" +version = "3.5.6+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -1306,15 +1324,15 @@ version = "0.7.1+0" [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "0662b083e11420952f2e62e17eddae7fc07d5997" +git-tree-sha1 = "58e5ed5e386e156bd93e86b305ebd21ac63d2d04" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" -version = "1.57.0+0" +version = "1.57.1+0" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "7d2f8f21da5db6a806faf7b9b292296da42b2810" +git-tree-sha1 = "5d5e0a78e971354b1c7bff0655d11fdc1b0e12c8" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.3" +version = "2.8.4" [[deps.Pidfile]] deps = ["FileWatching", "Test"] @@ -1329,9 +1347,13 @@ uuid = "30392449-352a-5448-841d-b1acce4e97dc" version = "0.44.2+0" [[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.10.0" +version = "1.11.0" +weakdeps = ["REPL"] + + [deps.Pkg.extensions] + REPLExt = "REPL" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1373,9 +1395,9 @@ version = "0.2.4" [[deps.PreallocationTools]] deps = ["Adapt", "ArrayInterface", "PrecompileTools"] -git-tree-sha1 = "dc8d6bde5005a0eac05ae8faf1eceaaca166cfa4" +git-tree-sha1 = "e16b73bf892c55d16d53c9c0dbd0fb31cb7e25da" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "1.1.2" +version = "1.2.0" [deps.PreallocationTools.extensions] PreallocationToolsForwardDiffExt = "ForwardDiff" @@ -1402,10 +1424,7 @@ version = "1.5.2" [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.Profile]] -deps = ["Printf"] -uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79" +version = "1.11.0" [[deps.ProgressLogging]] deps = ["Logging", "SHA", "UUIDs"] @@ -1476,9 +1495,9 @@ version = "6.10.2+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9da16da70037ba9d701192e27befedefb91ec284" +git-tree-sha1 = "5e8e8b0ab68215d7a2b14b9921a946fee794749e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.11.2" +version = "2.11.3" [deps.QuadGK.extensions] QuadGKEnzymeExt = "Enzyme" @@ -1487,12 +1506,14 @@ version = "2.11.2" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" [[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" +version = "1.11.0" [[deps.Random]] deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +version = "1.11.0" [[deps.RecipesBase]] deps = ["PrecompileTools"] @@ -1508,12 +1529,13 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "LinearAlgebra", "PrecompileTools", "RecipesBase", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "18d2a6fd1ea9a8205cadb3a5704f8e51abdd748b" +git-tree-sha1 = "d0282d612f22dcad7b81cf487b746e63aa2a6709" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.48.0" +version = "3.54.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsFastBroadcastPolyesterExt = ["FastBroadcast", "Polyester"] RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsKernelAbstractionsExt = "KernelAbstractions" RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -1532,6 +1554,7 @@ version = "3.48.0" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" @@ -1571,9 +1594,9 @@ version = "0.5.1+0" [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "7257165d5477fd1025f7cb656019dcb6b0512c38" +git-tree-sha1 = "cfcdc949c4660544ab0fdeed169561cb22f835f4" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.17" +version = "0.5.18" [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" @@ -1581,9 +1604,9 @@ version = "0.7.0" [[deps.SciMLBase]] deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Moshi", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "8787e28326c99b0c9c706b51da525ad09d03c56f" +git-tree-sha1 = "a017ed325ac5e11438c888864fe83b124bb171b7" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.149.0" +version = "2.155.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1644,9 +1667,9 @@ version = "1.9.1" [[deps.SciMLOperators]] deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra"] -git-tree-sha1 = "794c760e6aafe9f40dcd7dd30526ea33f0adc8b7" +git-tree-sha1 = "0e34162268883db01c04f988895a80d0659071bb" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "1.15.1" +version = "1.17.0" weakdeps = ["SparseArrays", "StaticArraysCore"] [deps.SciMLOperators.extensions] @@ -1678,6 +1701,7 @@ version = "0.2.0" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" +version = "1.11.0" [[deps.Setfield]] deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] @@ -1704,6 +1728,7 @@ version = "1.0.3" [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" +version = "1.11.0" [[deps.SortingAlgorithms]] deps = ["DataStructures"] @@ -1714,7 +1739,7 @@ version = "1.2.2" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -version = "1.10.0" +version = "1.11.0" [[deps.SparseConnectivityTracer]] deps = ["ADTypes", "DocStringExtensions", "FillArrays", "LinearAlgebra", "Random", "SparseArrays"] @@ -1738,22 +1763,25 @@ version = "1.2.1" [[deps.SparseMatrixColorings]] deps = ["ADTypes", "DocStringExtensions", "LinearAlgebra", "PrecompileTools", "Random", "SparseArrays"] -git-tree-sha1 = "7b2263c87aa890bf6d18ae05cedbe259754e3f34" +git-tree-sha1 = "f63d76c7b7c329cf11badd564fd8ba877b09c3fe" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.4.24" +version = "0.4.27" [deps.SparseMatrixColorings.extensions] - SparseMatrixColoringsCUDAExt = "CUDA" + SparseMatrixColoringsCUDAExt = ["CUDA", "cuSPARSE"] SparseMatrixColoringsCliqueTreesExt = "CliqueTrees" SparseMatrixColoringsColorsExt = "Colors" + SparseMatrixColoringsGPUArraysExt = "GPUArrays" SparseMatrixColoringsJuMPExt = ["JuMP", "MathOptInterface"] [deps.SparseMatrixColorings.weakdeps] CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" + GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" JuMP = "4076af6c-e467-56ae-b986-b466b2749572" MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" + cuSPARSE = "b26da814-b3bc-49ef-b0ee-c816305aa060" [[deps.SpatialIndexing]] git-tree-sha1 = "84efe17c77e1f2156a7a0d8a7c163c1e1c7bdaed" @@ -1762,9 +1790,9 @@ version = "0.1.6" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "5acc6a41b3082920f79ca3c759acbcecf18a8d78" +git-tree-sha1 = "2700b235561b0335d5bef7097a111dc513b8655e" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.7.1" +version = "2.7.2" weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] @@ -1788,9 +1816,14 @@ uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" version = "1.4.4" [[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] +deps = ["LinearAlgebra"] +git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.10.0" +version = "1.11.1" +weakdeps = ["SparseArrays"] + + [deps.Statistics.extensions] + SparseArraysExt = ["SparseArrays"] [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1827,6 +1860,10 @@ git-tree-sha1 = "159331b30e94d7b11379037feeb9b690950cace8" uuid = "856f2bd8-1eba-4b0a-8007-ebc267875bd4" version = "1.11.0" +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" + [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" @@ -1834,7 +1871,7 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "7.2.1+1" +version = "7.7.0+0" [[deps.SymbolicIndexingInterface]] deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] @@ -1885,6 +1922,7 @@ version = "0.1.7" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" +version = "1.11.0" [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] @@ -1903,6 +1941,12 @@ git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" version = "0.11.3" +[[deps.TruncatedStacktraces]] +deps = ["InteractiveUtils", "MacroTools", "Preferences"] +git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" +uuid = "781d530d-4396-4725-bb49-402e4bee1e77" +version = "1.4.0" + [[deps.Tulip]] deps = ["CodecBzip2", "CodecZlib", "Krylov", "LDLFactorizations", "LinearAlgebra", "LinearOperators", "Logging", "MathOptInterface", "Printf", "QPSReader", "SparseArrays", "SuiteSparse", "TOML", "Test", "TimerOutputs"] git-tree-sha1 = "d9415a833b926da3f753133a50d5ce316c51bc67" @@ -1931,6 +1975,7 @@ version = "1.6.1" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +version = "1.11.0" [[deps.UnPack]] git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" @@ -1939,6 +1984,7 @@ version = "1.0.2" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +version = "1.11.0" [[deps.UnicodeFun]] deps = ["REPL"] @@ -1981,9 +2027,9 @@ version = "0.10.12" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "9cce64c0fdd1960b597ba7ecda2950b5ed957438" +git-tree-sha1 = "b29c22e245d092b8b4e8d3c09ad7baa586d9f573" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.8.2+0" +version = "5.8.3+0" [[deps.Xorg_libICE_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2059,9 +2105,9 @@ version = "0.9.12+0" [[deps.Xorg_libpciaccess_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "4909eb8f1cbf6bd4b1c30dd18b2ead9019ef2fad" +git-tree-sha1 = "58972370b81423fc546c56a60ed1a009450177c3" uuid = "a65dc6b1-eb27-53a1-bb3e-dea574b5389e" -version = "0.18.1+0" +version = "0.19.0+0" [[deps.Xorg_libxcb_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXau_jll", "Xorg_libXdmcp_jll"] @@ -2119,9 +2165,9 @@ version = "1.4.7+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "00af7ebdc563c9217ecc67776d1bbf037dbcebf4" +git-tree-sha1 = "429722587208f02b1cecbddcd20133df2f1ed796" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.44.0+0" +version = "2.47.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2172,9 +2218,9 @@ version = "0.61.1+0" [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" +git-tree-sha1 = "850b06095ee71f0135d644ffd8a52850699581ed" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.13.1+0" +version = "3.13.3+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] @@ -2219,9 +2265,9 @@ version = "1.28.1+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" +git-tree-sha1 = "e51150d5ab85cee6fc36726850f0e627ad2e4aba" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.55+0" +version = "1.6.58+0" [[deps.libsodium_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2256,7 +2302,7 @@ version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.52.0+1" +version = "1.59.0+0" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] diff --git a/benchmarks/HybridJumps/MultivariateHawkes.jmd b/benchmarks/HybridJumps/MultivariateHawkes.jmd index 0aeb0a445..907a94dd3 100644 --- a/benchmarks/HybridJumps/MultivariateHawkes.jmd +++ b/benchmarks/HybridJumps/MultivariateHawkes.jmd @@ -7,6 +7,7 @@ weave_options: ```julia using JumpProcesses, Graphs, Statistics, BenchmarkTools, Plots +using SciMLLogging using OrdinaryDiffEq: Tsit5 fmt = :png width_px, height_px = default(:size); @@ -409,7 +410,7 @@ if BENCHMARK_PYTHON adjacency = [i in j ? α / β : 0.0 for j in g, i in 1:length(u), u in 1:1], decays = [β], end_time = tspan[2], - verbose = false, + verbose = SciMLLogging.None(), force_simulation = true ) return jprob diff --git a/benchmarks/HybridJumps/Project.toml b/benchmarks/HybridJumps/Project.toml index 28549cd42..b04fbd125 100644 --- a/benchmarks/HybridJumps/Project.toml +++ b/benchmarks/HybridJumps/Project.toml @@ -18,6 +18,7 @@ Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" SciMLBenchmarks = "31c91b34-3c75-11e9-0341-95557aab0344" +SciMLLogging = "a6db7da4-7206-11f0-1eab-35f2a5dbe1d1" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StableRNGs = "860ef19b-820b-49d6-a774-d7a799459cd3" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" @@ -25,23 +26,24 @@ StochasticDiffEq = "789caeaf-c7a9-5a7d-9973-96adeb23e2a0" [compat] BenchmarkTools = "1.4" -Catalyst = "15" +Catalyst = "16" Conda = "1" DataStructures = "0.18, 0.19" -DiffEqBase = "6" +DiffEqBase = "7" DiffEqCallbacks = "4" Distributions = "0.25" Graphs = "1" JumpProcesses = "9.9" LazySets = "4, 5" LinearSolve = "3" -OrdinaryDiffEq = "6.58" +OrdinaryDiffEq = "7" Parameters = "0.12" PiecewiseDeterministicMarkovProcesses = "0.0.10" Plots = "1.39" PyCall = "1" -RecursiveArrayTools = "3" +RecursiveArrayTools = "4" SciMLBenchmarks = "0.1" +SciMLLogging = "1, 2" StableRNGs = "1" StaticArrays = "1.7" -StochasticDiffEq = "6" +StochasticDiffEq = "7" diff --git a/benchmarks/HybridJumps/Synapse.jmd b/benchmarks/HybridJumps/Synapse.jmd index 3ee1b68d5..42794711f 100644 --- a/benchmarks/HybridJumps/Synapse.jmd +++ b/benchmarks/HybridJumps/Synapse.jmd @@ -1980,7 +1980,7 @@ function (affect!::SavingAffect)(integrator, force_save = false) Val{false} ) end - u_modified!(integrator, false) + derivative_discontinuity!(integrator, false) end # adapted from DiffEqCallbacks.jl/src/saving.jl diff --git a/benchmarks/IntervalNonlinearProblem/Manifest.toml b/benchmarks/IntervalNonlinearProblem/Manifest.toml index e8ea222e8..5d5d2c1a2 100644 --- a/benchmarks/IntervalNonlinearProblem/Manifest.toml +++ b/benchmarks/IntervalNonlinearProblem/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.12.5" +julia_version = "1.11.9" manifest_format = "2.0" -project_hash = "ca6eba13a4bf42495e524f26d519f7a5d10ea228" +project_hash = "aaeedf534529e75680ab10e93ea72f251a1d2bba" [[deps.ADTypes]] -git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" +git-tree-sha1 = "bbc22a9a08a0ef6460041086d8a7b27940ed4ffd" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.21.0" +version = "1.22.0" [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" @@ -21,9 +21,9 @@ version = "1.21.0" [[deps.Accessors]] deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] -git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +git-tree-sha1 = "2eeb2c9bef11013efc6f8f97f32ee59b146b09fb" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.43" +version = "0.1.44" [deps.Accessors.extensions] AxisKeysExt = "AxisKeys" @@ -45,9 +45,9 @@ version = "0.1.43" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" +git-tree-sha1 = "0761717147821d696c9470a7a86364b2fbd22fd8" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.4.0" +version = "4.5.2" [deps.Adapt.extensions] AdaptSparseArraysExt = "SparseArrays" @@ -63,11 +63,12 @@ version = "1.1.2" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" +git-tree-sha1 = "54f895554d05c83e3dd59f6a396671dae8999573" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.22.0" +version = "7.24.0" [deps.ArrayInterface.extensions] + ArrayInterfaceAMDGPUExt = "AMDGPU" ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" @@ -82,6 +83,7 @@ version = "7.22.0" ArrayInterfaceTrackerExt = "Tracker" [deps.ArrayInterface.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" @@ -104,16 +106,16 @@ uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" version = "1.11.0" [[deps.BenchmarkTools]] -deps = ["Compat", "JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"] -git-tree-sha1 = "7fecfb1123b8d0232218e2da0c213004ff15358d" +deps = ["Compat", "JSON", "Logging", "PrecompileTools", "Printf", "Profile", "Statistics", "UUIDs"] +git-tree-sha1 = "9670d3febc2b6da60a0ae57846ba74670290653f" uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" -version = "1.6.3" +version = "1.8.0" [[deps.BracketingNonlinearSolve]] deps = ["CommonSolve", "ConcreteStructs", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "82d41295a372b28304cca05187080a5a4a26afbb" +git-tree-sha1 = "7ad7171d693ae5552ac43862e7f6b61df4471c2b" uuid = "70df07ce-3d50-431d-a3e7-ca6ddb60ac1e" -version = "1.7.0" +version = "1.12.1" [deps.BracketingNonlinearSolve.extensions] BracketingNonlinearSolveChainRulesCoreExt = ["ChainRulesCore", "ForwardDiff"] @@ -123,18 +125,6 @@ version = "1.7.0" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" -[[deps.CSV]] -deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] -git-tree-sha1 = "deddd8725e5e1cc49ee205a1964256043720a6c3" -uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" -version = "0.10.15" - -[[deps.CodecZlib]] -deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" -uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.8" - [[deps.CommonSolve]] git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" @@ -159,7 +149,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.3.0+1" +version = "1.1.1+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -196,28 +186,11 @@ version = "1.6.0" LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" - [[deps.DataAPI]] git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" version = "1.16.0" -[[deps.DataFrames]] -deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "d8928e9169ff76c6281f39a659f9bca3a573f24c" -uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.8.1" - -[[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "4e1fe97fdaed23e9dc21d4d664bea76b65fc50a0" -uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.22" - [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" uuid = "e2d170a0-9d28-54be-80f0-106bbe20a464" @@ -242,9 +215,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +git-tree-sha1 = "d0250552e42bf7cc36479fd38a6e30004c9e8c2b" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.7.16" +version = "0.7.17" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -254,7 +227,7 @@ version = "0.7.16" DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] - DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGPUArraysCoreExt = ["GPUArraysCore", "Adapt"] DifferentiationInterfaceGTPSAExt = "GTPSA" DifferentiationInterfaceMooncakeExt = "Mooncake" DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] @@ -268,6 +241,7 @@ version = "0.7.16" DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] [deps.DifferentiationInterface.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" @@ -303,17 +277,17 @@ version = "0.9.5" [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.7.0" +version = "1.6.0" [[deps.EnumX]] -git-tree-sha1 = "7bebc8aad6ee6217c78c5ddcf7ed289d65d0263e" +git-tree-sha1 = "c49898e8438c828577f04b92fc9368c388ac783c" uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.6" +version = "1.0.7" [[deps.EnzymeCore]] -git-tree-sha1 = "990991b8aa76d17693a98e3a915ac7aa49f08d1a" +git-tree-sha1 = "c6ee69ee502060982d12dbaaf3d8fcb4e835a0d1" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.8.18" +version = "0.8.20" [deps.EnzymeCore.extensions] AdaptExt = "Adapt" @@ -325,48 +299,29 @@ version = "0.8.18" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "27af30de8b5445644e8ffe3bcb0d72049c089cf1" +git-tree-sha1 = "8f05e9a2e7c2e3eb524102bb2926c5743c07fbe1" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.7.3+0" +version = "2.8.0+0" [[deps.ExprTools]] git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" version = "0.1.10" -[[deps.ExproniconLite]] -git-tree-sha1 = "c13f0b150373771b0fdc1713c97860f8df12e6c2" -uuid = "55351af7-c7e9-48d6-89ff-24e801d99491" -version = "0.10.14" - [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" version = "0.3.2" -[[deps.FilePathsBase]] -deps = ["Compat", "Dates"] -git-tree-sha1 = "3bab2c5aa25e7840a4b065805c0cdfc01f3068d2" -uuid = "48062228-2e41-5def-b9a4-89aafe57970f" -version = "0.9.24" - - [deps.FilePathsBase.extensions] - FilePathsBaseMmapExt = "Mmap" - FilePathsBaseTestExt = "Test" - - [deps.FilePathsBase.weakdeps] - Mmap = "a63ad114-7e13-5084-954f-fe012c677804" - Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" version = "1.11.0" [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "9340ca07ca27093ff68418b7558ca37b05f8aeb1" +git-tree-sha1 = "f7017a4f337f8df189fcce98e32b67a1298a2115" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.29.0" +version = "2.31.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -382,9 +337,9 @@ version = "2.29.0" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "eef4c86803f47dcb61e9b8790ecaa96956fdd8ae" +git-tree-sha1 = "cddeab6487248a39dae1a960fff0ac17b2a28888" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "1.3.2" +version = "1.3.3" [deps.ForwardDiff.extensions] ForwardDiffStaticArraysExt = "StaticArrays" @@ -398,10 +353,19 @@ uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" version = "1.1.3" [[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +deps = ["FunctionWrappers", "PrecompileTools", "TruncatedStacktraces"] +git-tree-sha1 = "c1b0c3a166a2a393257aa888787ca817532e14ce" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" +version = "1.8.0" + + [deps.FunctionWrappersWrappers.extensions] + FunctionWrappersWrappersEnzymeExt = ["Enzyme", "EnzymeCore"] + FunctionWrappersWrappersMooncakeExt = "Mooncake" + + [deps.FunctionWrappersWrappers.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" [[deps.Future]] deps = ["Random"] @@ -428,9 +392,9 @@ version = "3.7.0+0" [[deps.Git_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "dc34a3e3d96b4ed305b641e626dc14c12b7824b8" +git-tree-sha1 = "0dd4cfb426924210c8f42742751cbde74b27bfa3" uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb" -version = "2.53.0+0" +version = "2.54.0+0" [[deps.Highlights]] deps = ["DocStringExtensions", "InteractiveUtils", "REPL"] @@ -440,9 +404,9 @@ version = "0.5.3" [[deps.IJulia]] deps = ["Base64", "Conda", "Dates", "InteractiveUtils", "Logging", "Markdown", "Pkg", "PrecompileTools", "Printf", "REPL", "Random", "SHA", "Sockets", "UUIDs", "ZMQ"] -git-tree-sha1 = "4909c2fbc99972c57e0921b6848f8669abc58a34" +git-tree-sha1 = "102656c4efc9737f892e1bca7e66ae374c650740" uuid = "7073ff75-c697-5162-941a-fcdaad2a7d2a" -version = "1.34.3" +version = "1.34.4" [deps.IJulia.extensions] IJuliaPythonCallExt = "PythonCall" @@ -452,19 +416,6 @@ version = "1.34.3" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" Revise = "295af30f-e4ad-537b-8983-00126c2a3abe" -[[deps.InlineStrings]] -git-tree-sha1 = "8f3d257792a522b4601c24a577954b0a8cd7334d" -uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" -version = "1.4.5" - - [deps.InlineStrings.extensions] - ArrowTypesExt = "ArrowTypes" - ParsersExt = "Parsers" - - [deps.InlineStrings.weakdeps] - ArrowTypes = "31f734f8-188a-4ce0-8406-c8a06bd891cd" - Parsers = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" - [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" @@ -483,11 +434,6 @@ version = "0.1.17" Dates = "ade2ca70-3891-5945-98fb-dc099432e06a" Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" -[[deps.InvertedIndices]] -git-tree-sha1 = "6da3c4316095de0f5ee2ebd875df8721e7e0bdbe" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.1" - [[deps.IrrationalConstants]] git-tree-sha1 = "b2d91fe939cae05960e760110b328288867b5758" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" @@ -510,46 +456,30 @@ git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.4" -[[deps.Jieko]] -deps = ["ExproniconLite"] -git-tree-sha1 = "2f05ed29618da60c06a87e9c033982d4f71d0b6c" -uuid = "ae98c720-c025-4a4a-838c-29b094483192" -version = "0.2.1" - -[[deps.JuliaSyntaxHighlighting]] -deps = ["StyledStrings"] -uuid = "ac6e5ff7-fb65-4e79-a425-ec3bc9c03011" -version = "1.12.0" - -[[deps.LaTeXStrings]] -git-tree-sha1 = "dda21b8cbd6a6c40d9d02a73230f9d70fed6918c" -uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.4.0" - [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" version = "0.6.4" [[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "OpenSSL_jll", "Zlib_jll", "nghttp2_jll"] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.15.0+0" +version = "8.6.0+0" [[deps.LibGit2]] -deps = ["LibGit2_jll", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" version = "1.11.0" [[deps.LibGit2_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "OpenSSL_jll"] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.9.0+0" +version = "1.7.2+0" [[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "OpenSSL_jll"] +deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.11.3+1" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -561,17 +491,11 @@ git-tree-sha1 = "be484f5c92fad0bd8acfef35fe017900b0b73809" uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" version = "1.18.0+0" -[[deps.LightXML]] -deps = ["Libdl", "XML2_jll"] -git-tree-sha1 = "aa971a09f0f1fe92fe772713a564aa48abe510df" -uuid = "9c8b4983-aa76-5018-a973-4c85ecc9e179" -version = "0.9.3" - [[deps.LineSearch]] deps = ["ADTypes", "CommonSolve", "ConcreteStructs", "FastClosures", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "SciMLBase", "SciMLJacobianOperators", "StaticArraysCore"] -git-tree-sha1 = "9f7253c0574b4b585c8909232adb890930da980a" +git-tree-sha1 = "fd58a77c92e7c8f1db25c9839127d52943a49349" uuid = "87fe0de2-c867-4266-b59a-2f0a94fc965b" -version = "0.1.6" +version = "0.1.9" [deps.LineSearch.extensions] LineSearchLineSearchesExt = "LineSearches" @@ -582,7 +506,7 @@ version = "0.1.6" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" -version = "1.12.0" +version = "1.11.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] @@ -616,7 +540,7 @@ uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" version = "0.5.16" [[deps.Markdown]] -deps = ["Base64", "JuliaSyntaxHighlighting", "StyledStrings"] +deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" version = "1.11.0" @@ -632,25 +556,18 @@ version = "0.1.4" [deps.MaybeInplace.weakdeps] SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -[[deps.Missings]] -deps = ["DataAPI"] -git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" -uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.2.0" +[[deps.MbedTLS_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" +version = "2.28.6+0" [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" version = "1.11.0" -[[deps.Moshi]] -deps = ["ExproniconLite", "Jieko"] -git-tree-sha1 = "53f817d3e84537d84545e0ad749e483412dd6b2a" -uuid = "2e0e35c7-a2e4-4343-998d-7ef72827ed2d" -version = "0.3.7" - [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2025.11.4" +version = "2023.12.12" [[deps.Mustache]] deps = ["Printf", "Tables"] @@ -666,13 +583,13 @@ version = "1.1.3" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.3.0" +version = "1.2.0" [[deps.NonlinearSolveBase]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "LinearAlgebra", "LogExpFunctions", "Markdown", "MaybeInplace", "PreallocationTools", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "37fafbc6299df165db942a4f1dc057f6f688827c" +deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "LogExpFunctions", "Markdown", "MaybeInplace", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] +git-tree-sha1 = "a19a5df29ef2b197499fc631fa1a59385ae15262" uuid = "be0214bd-f91f-a760-ac4e-3421ce2b2da0" -version = "2.12.0" +version = "2.25.0" [deps.NonlinearSolveBase.extensions] NonlinearSolveBaseBandedMatricesExt = "BandedMatrices" @@ -700,32 +617,27 @@ version = "2.12.0" SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -[[deps.OMJulia]] -deps = ["DataFrames", "DataStructures", "LightXML", "Random", "ZMQ"] -git-tree-sha1 = "5f2b4eb7fed3c1ac9108c72996bd1ac47da1c940" -uuid = "0f4fe800-344e-11e9-2949-fb537ad918e1" -version = "0.3.2" - [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.29+0" +version = "0.3.27+1" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.7+0" +version = "0.8.5+0" [[deps.OpenSSH_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "OpenSSL_jll", "Zlib_jll"] -git-tree-sha1 = "301412a644646fdc0ad67d0a87487466b491e53d" +git-tree-sha1 = "57baa4b81a24c2910afbb6d853aa0685e4312bf7" uuid = "9bd350c2-7e96-507f-8002-3f2e150b4e1b" -version = "10.2.1+0" +version = "10.3.1+0" [[deps.OpenSSL_jll]] -deps = ["Artifacts", "Libdl"] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "2ac022577e5eac7da040de17776d51bb770cd895" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.5.4+0" +version = "3.5.6+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -741,34 +653,28 @@ version = "1.8.1" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.44.0+1" +version = "10.42.0+1" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "7d2f8f21da5db6a806faf7b9b292296da42b2810" +git-tree-sha1 = "5d5e0a78e971354b1c7bff0655d11fdc1b0e12c8" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.3" +version = "2.8.4" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.12.1" +version = "1.11.0" weakdeps = ["REPL"] [deps.Pkg.extensions] REPLExt = "REPL" -[[deps.PooledArrays]] -deps = ["DataAPI", "Future"] -git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" -uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720" -version = "1.4.3" - [[deps.PreallocationTools]] deps = ["Adapt", "ArrayInterface", "PrecompileTools"] -git-tree-sha1 = "dc8d6bde5005a0eac05ae8faf1eceaaca166cfa4" +git-tree-sha1 = "e16b73bf892c55d16d53c9c0dbd0fb31cb7e25da" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "1.1.2" +version = "1.2.0" [deps.PreallocationTools.extensions] PreallocationToolsForwardDiffExt = "ForwardDiff" @@ -782,27 +688,15 @@ version = "1.1.2" [[deps.PrecompileTools]] deps = ["Preferences"] -git-tree-sha1 = "07a921781cab75691315adc645096ed5e370cb77" +git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.3.3" +version = "1.2.1" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "522f093a29b31a93e34eaea17ba055d850edea28" +git-tree-sha1 = "8b770b60760d4451834fe79dd483e318eee709c4" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.5.1" - -[[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "REPL", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "211530a7dc76ab59087f4d4d1fc3f086fbe87594" -uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "3.2.3" - - [deps.PrettyTables.extensions] - PrettyTablesTypstryExt = "Typstry" - - [deps.PrettyTables.weakdeps] - Typstry = "f0ed7684-a786-439e-b1e3-3b82803b501e" +version = "1.5.2" [[deps.Printf]] deps = ["Unicode"] @@ -810,12 +704,11 @@ uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" version = "1.11.0" [[deps.Profile]] -deps = ["StyledStrings"] uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79" version = "1.11.0" [[deps.REPL]] -deps = ["InteractiveUtils", "JuliaSyntaxHighlighting", "Markdown", "Sockets", "StyledStrings", "Unicode"] +deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" version = "1.11.0" @@ -832,16 +725,19 @@ version = "1.3.4" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "LinearAlgebra", "PrecompileTools", "RecipesBase", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "18d2a6fd1ea9a8205cadb3a5704f8e51abdd748b" +git-tree-sha1 = "57b6fb3932fc8d1fc911f840d2c9de5fe3ba5008" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.48.0" +version = "4.3.0" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsCUDAExt = "CUDA" RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsFastBroadcastPolyesterExt = ["FastBroadcast", "Polyester"] RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsKernelAbstractionsExt = "KernelAbstractions" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsMooncakeExt = "Mooncake" RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] RecursiveArrayToolsStatisticsExt = "Statistics" @@ -851,11 +747,14 @@ version = "3.48.0" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" @@ -883,9 +782,9 @@ version = "1.3.1" [[deps.Roots]] deps = ["Accessors", "CommonSolve", "Printf"] -git-tree-sha1 = "8a433b1ede5e9be9a7ba5b1cc6698daa8d718f1d" +git-tree-sha1 = "3eff988b9bd09543783e2e051b0a1eef11f65c2d" uuid = "f2b01f46-fcfa-551c-844a-d8ac1e96c665" -version = "2.2.10" +version = "2.3.0" [deps.Roots.extensions] RootsChainRulesCoreExt = "ChainRulesCore" @@ -905,19 +804,19 @@ version = "2.2.10" [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "7257165d5477fd1025f7cb656019dcb6b0512c38" +git-tree-sha1 = "cfcdc949c4660544ab0fdeed169561cb22f835f4" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.17" +version = "0.5.18" [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" [[deps.SciMLBase]] -deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Moshi", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "f2c5ddf74a49c1fd74e511d31168f0354c6c1e19" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "Random", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] +git-tree-sha1 = "450a8405f96d0a7c6caabed0852def06ba8c6bf1" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.138.1" +version = "3.7.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -925,7 +824,6 @@ version = "2.138.1" SciMLBaseDistributionsExt = "Distributions" SciMLBaseEnzymeExt = "Enzyme" SciMLBaseForwardDiffExt = "ForwardDiff" - SciMLBaseMLStyleExt = "MLStyle" SciMLBaseMakieExt = "Makie" SciMLBaseMeasurementsExt = "Measurements" SciMLBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" @@ -945,7 +843,6 @@ version = "2.138.1" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - MLStyle = "d8e11817-5142-5d16-987a-aa16d5891078" Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" @@ -959,28 +856,34 @@ version = "2.138.1" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLBenchmarks]] -deps = ["CSV", "DataFrames", "Git", "IJulia", "InteractiveUtils", "Markdown", "OMJulia", "Pkg", "PrecompileTools", "Weave"] -path = "../.." +deps = ["Git", "IJulia", "InteractiveUtils", "Markdown", "Pkg", "Weave"] +git-tree-sha1 = "f4076dd5a103010d48bb6c4e50c5526f6622fa96" uuid = "31c91b34-3c75-11e9-0341-95557aab0344" version = "0.1.3" [[deps.SciMLJacobianOperators]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DifferentiationInterface", "FastClosures", "LinearAlgebra", "SciMLBase", "SciMLOperators"] -git-tree-sha1 = "e96d5e96debf7f80a50d0b976a13dea556ccfd3a" +git-tree-sha1 = "7156a5b51cba1bea33a82a036939ead4131f92bc" uuid = "19f34311-ddf3-4b8b-af20-060888a46c0e" -version = "0.1.12" +version = "0.1.13" [[deps.SciMLLogging]] deps = ["Logging", "LoggingExtras", "Preferences"] -git-tree-sha1 = "7eebb9985e35b123e12025a3a2ad020cd6059f71" +git-tree-sha1 = "0161be062570af4042cf6f69e3d5d0b0555b6927" uuid = "a6db7da4-7206-11f0-1eab-35f2a5dbe1d1" -version = "1.8.0" +version = "1.9.1" + + [deps.SciMLLogging.extensions] + SciMLLoggingTracyExt = "Tracy" + + [deps.SciMLLogging.weakdeps] + Tracy = "e689c965-62c8-4b79-b2c5-8359227902fd" [[deps.SciMLOperators]] deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra"] -git-tree-sha1 = "794c760e6aafe9f40dcd7dd30526ea33f0adc8b7" +git-tree-sha1 = "0e34162268883db01c04f988895a80d0659071bb" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "1.15.1" +version = "1.17.0" [deps.SciMLOperators.extensions] SciMLOperatorsSparseArraysExt = "SparseArrays" @@ -1007,12 +910,6 @@ git-tree-sha1 = "9b81b8393e50b7d4e6d0a9f14e192294d3b7c109" uuid = "6c6a2e73-6563-6170-7368-637461726353" version = "1.3.0" -[[deps.SentinelArrays]] -deps = ["Dates", "Random"] -git-tree-sha1 = "ebe7e59b37c400f694f52b58c93d26201387da70" -uuid = "91c51154-3ec4-41a3-a24f-3f23e20d615c" -version = "1.4.9" - [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" version = "1.11.0" @@ -1025,9 +922,9 @@ version = "1.1.2" [[deps.SimpleNonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "315da09948861edbc6d18e066c08903487bb580d" +git-tree-sha1 = "d688de789b7e643326caf9a1051376dadbcd8873" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "2.10.0" +version = "2.11.1" [deps.SimpleNonlinearSolve.extensions] SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" @@ -1043,17 +940,11 @@ version = "2.10.0" uuid = "6462fe0b-24de-5631-8697-dd941f90decc" version = "1.11.0" -[[deps.SortingAlgorithms]] -deps = ["DataStructures"] -git-tree-sha1 = "64d974c2e6fdf07f8155b5b2ca2ffa9069b608d9" -uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.2.2" - [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "5acc6a41b3082920f79ca3c759acbcecf18a8d78" +git-tree-sha1 = "2700b235561b0335d5bef7097a111dc513b8655e" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.7.1" +version = "2.7.2" [deps.SpecialFunctions.extensions] SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" @@ -1084,12 +975,6 @@ git-tree-sha1 = "b765e46ba27ecf6b44faf70df40c57aa3a547dcb" uuid = "69024149-9ee7-55f6-a4c4-859efe599b68" version = "0.3.7" -[[deps.StringManipulation]] -deps = ["PrecompileTools"] -git-tree-sha1 = "a3c1536470bf8c5e02096ad4853606d7c8f62721" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.4.2" - [[deps.StyledStrings]] uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" version = "1.11.0" @@ -1099,11 +984,13 @@ deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArray git-tree-sha1 = "94c58884e013efff548002e8dc2fdd1cb74dfce5" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" version = "0.3.46" -weakdeps = ["PrettyTables"] [deps.SymbolicIndexingInterface.extensions] SymbolicIndexingInterfacePrettyTablesExt = "PrettyTables" + [deps.SymbolicIndexingInterface.weakdeps] + PrettyTables = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" + [[deps.TOML]] deps = ["Dates"] uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" @@ -1138,10 +1025,11 @@ version = "0.5.29" [deps.TimerOutputs.weakdeps] FlameGraphs = "08572546-2f56-4bcf-ba4e-bab62c3a3f89" -[[deps.TranscodingStreams]] -git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742" -uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.11.3" +[[deps.TruncatedStacktraces]] +deps = ["InteractiveUtils", "MacroTools", "Preferences"] +git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" +uuid = "781d530d-4396-4725-bb49-402e4bee1e77" +version = "1.4.0" [[deps.UUIDs]] deps = ["Random", "SHA"] @@ -1157,29 +1045,12 @@ git-tree-sha1 = "58d6e80b4ee071f5efd07fda82cb9fbe17200868" uuid = "81def892-9a0e-5fdd-b105-ffc91e053289" version = "1.3.0" -[[deps.WeakRefStrings]] -deps = ["DataAPI", "InlineStrings", "Parsers"] -git-tree-sha1 = "b1be2855ed9ed8eac54e5caff2afcdb442d52c23" -uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5" -version = "1.4.2" - [[deps.Weave]] deps = ["Base64", "Dates", "Highlights", "JSON", "Markdown", "Mustache", "Pkg", "Printf", "REPL", "RelocatableFolders", "Requires", "Serialization", "YAML"] git-tree-sha1 = "092217eb5443926d200ae9325f103906efbb68b1" uuid = "44d3d7a6-8a23-5bf8-98c5-b353f8df5ec9" version = "0.10.12" -[[deps.WorkerUtilities]] -git-tree-sha1 = "cd1659ba0d57b71a464a29e64dbc67cfe83d54e7" -uuid = "76eceee3-57b5-4d4a-8e66-0e911cebbf60" -version = "1.6.1" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "5c959b708667b34cb758e8d7c6f8e69b94c32deb" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.15.1+0" - [[deps.YAML]] deps = ["Base64", "Dates", "Printf", "StringEncodings"] git-tree-sha1 = "a1c0c7585346251353cddede21f180b96388c403" @@ -1201,12 +1072,12 @@ version = "4.3.6+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.3.1+2" +version = "1.2.13+1" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.15.0+0" +version = "5.11.0+0" [[deps.libsodium_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1217,9 +1088,9 @@ version = "1.0.21+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.64.0+1" +version = "1.59.0+0" [[deps.p7zip_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.7.0+0" +version = "17.4.0+2" diff --git a/benchmarks/Jumps/Project.toml b/benchmarks/Jumps/Project.toml index 7562773dd..36ae1acbc 100644 --- a/benchmarks/Jumps/Project.toml +++ b/benchmarks/Jumps/Project.toml @@ -24,22 +24,22 @@ Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" [compat] BenchmarkTools = "1.4" -Catalyst = "15" +Catalyst = "16" Conda = "1.9.1" DataFrames = "1.3.4" -DifferentialEquations = "7" +DifferentialEquations = "8" Distributions = "0.25" Graphs = "1" JumpProblemLibrary = "1.0.0" JumpProcesses = "9.9" -ModelingToolkit = "9" -OrdinaryDiffEq = "6.5" +ModelingToolkit = "11" +OrdinaryDiffEq = "7" PiecewiseDeterministicMarkovProcesses = "0.0.10" Plots = "1.39" PyCall = "1.96.4" -ReactionNetworkImporters = "0.16" +ReactionNetworkImporters = "1" SciMLBenchmarks = "0.1" StableRNGs = "1" Statistics = "1" StatsPlots = "0.15" -Sundials = "4, 5" +Sundials = "6" diff --git a/benchmarks/MethodOfLinesPDE/Manifest.toml b/benchmarks/MethodOfLinesPDE/Manifest.toml index 4e9624871..3e733cf05 100644 --- a/benchmarks/MethodOfLinesPDE/Manifest.toml +++ b/benchmarks/MethodOfLinesPDE/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.11" +julia_version = "1.11.9" manifest_format = "2.0" -project_hash = "413b8503e8b6eb0b4d4d05b2938cb61528c70596" +project_hash = "6cc6c0f32af941cc496ec249d56f030c40d85360" [[deps.ADTypes]] -git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" +git-tree-sha1 = "bbc22a9a08a0ef6460041086d8a7b27940ed4ffd" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.21.0" +version = "1.22.0" weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] [deps.ADTypes.extensions] @@ -28,9 +28,9 @@ version = "0.4.5" [[deps.Accessors]] deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] -git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +git-tree-sha1 = "2eeb2c9bef11013efc6f8f97f32ee59b146b09fb" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.43" +version = "0.1.44" [deps.Accessors.extensions] AxisKeysExt = "AxisKeys" @@ -52,9 +52,9 @@ version = "0.1.43" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "35ea197a51ce46fcd01c4a44befce0578a1aaeca" +git-tree-sha1 = "0761717147821d696c9470a7a86364b2fbd22fd8" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.5.0" +version = "4.5.2" weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] @@ -69,7 +69,7 @@ version = "1.1.3" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.ArnoldiMethod]] deps = ["LinearAlgebra", "Random", "StaticArrays"] @@ -79,9 +79,9 @@ version = "0.4.0" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "78b3a7a536b4b0a747a0f296ea77091ca0a9f9a3" +git-tree-sha1 = "54f895554d05c83e3dd59f6a396671dae8999573" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.23.0" +version = "7.24.0" [deps.ArrayInterface.extensions] ArrayInterfaceAMDGPUExt = "AMDGPU" @@ -125,6 +125,7 @@ weakdeps = ["SparseArrays"] [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +version = "1.11.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] @@ -148,6 +149,7 @@ version = "1.11.0" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Bijections]] git-tree-sha1 = "a2d308fcd4c2fb90e943cf9cd2fbfa9c32b69733" @@ -188,9 +190,9 @@ weakdeps = ["Adapt", "BandedMatrices"] [[deps.BracketingNonlinearSolve]] deps = ["CommonSolve", "ConcreteStructs", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "4999dff8efd76814f6662519b985aeda975a1924" +git-tree-sha1 = "7ad7171d693ae5552ac43862e7f6b61df4471c2b" uuid = "70df07ce-3d50-431d-a3e7-ca6ddb60ac1e" -version = "1.11.0" +version = "1.12.1" weakdeps = ["ChainRulesCore", "ForwardDiff"] [deps.BracketingNonlinearSolve.extensions] @@ -215,16 +217,16 @@ uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" version = "0.2.7" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d0efe2c6fdcdaa1c161d206aa8b933788397ec71" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.5+1" +version = "1.18.6+0" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" +git-tree-sha1 = "12177ad6b3cad7fd50c8b3825ce24a99ad61c18f" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.26.0" +version = "1.26.1" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] @@ -253,13 +255,11 @@ deps = ["FixedPointNumbers", "Random"] git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" version = "0.12.1" +weakdeps = ["StyledStrings"] [deps.ColorTypes.extensions] StyledStringsExt = "StyledStrings" - [deps.ColorTypes.weakdeps] - StyledStrings = "f489334b-da3d-4c2e-b8f0-e476e12c162b" - [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" @@ -372,9 +372,9 @@ version = "1.16.0" [[deps.DataStructures]] deps = ["OrderedCollections"] -git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" +git-tree-sha1 = "e86f4a2805f7f19bec5129bc9150c38208e5dc23" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.19.3" +version = "0.19.4" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -384,6 +384,7 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" [[deps.Dbus_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] @@ -397,11 +398,17 @@ git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" version = "1.9.1" +[[deps.Dictionaries]] +deps = ["Indexing", "Random", "Serialization"] +git-tree-sha1 = "a55766a9c8f66cf19ffcdbdb1444e249bb4ace33" +uuid = "85a47980-9c8c-11e8-2b9f-f7ca1fa99fb4" +version = "0.4.6" + [[deps.DiffEqBase]] -deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "96e0d3006aac4a322691de81f0baedd38b62a0c4" +deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "b86b6a1269fa822bd0cfdb3118f91674e92595ec" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.211.0" +version = "7.2.0" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" @@ -442,9 +449,9 @@ version = "6.211.0" [[deps.DiffEqCallbacks]] deps = ["ConcreteStructs", "DataStructures", "DiffEqBase", "DifferentiationInterface", "LinearAlgebra", "Markdown", "PrecompileTools", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "f17b863c2d5d496363fe36c8d8535cc6a33c9952" +git-tree-sha1 = "51f445c25b80c26c83c61520cde214adf8c05227" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "4.12.0" +version = "4.17.0" [deps.DiffEqCallbacks.extensions] DiffEqCallbacksFunctorsExt = "Functors" @@ -454,15 +461,15 @@ version = "4.12.0" [[deps.DiffEqDevTools]] deps = ["DiffEqBase", "DiffEqNoiseProcess", "Distributed", "LinearAlgebra", "Logging", "NLsolve", "RecipesBase", "RecursiveArrayTools", "RootedTrees", "SciMLBase", "Statistics", "StructArrays"] -git-tree-sha1 = "5ff2f5b04b9504e1bc6aa22d0787091738613148" +git-tree-sha1 = "cc290a2fdad4d332ba6a88953eaf5800687ccd49" uuid = "f3b72e0c-5b89-59e1-b016-84e28bfd966d" -version = "2.49.0" +version = "3.0.0" [[deps.DiffEqNoiseProcess]] deps = ["CommonSolve", "DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "PoissonRandom", "QuadGK", "Random", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "b879ca516034469f28becdf01f85f56b45f518b9" +git-tree-sha1 = "5b5fe6eb9e994ff0de4e84fe149b03c706fd6403" uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" -version = "5.27.0" +version = "5.31.0" [deps.DiffEqNoiseProcess.extensions] DiffEqNoiseProcessOptimExt = "Optim" @@ -486,9 +493,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +git-tree-sha1 = "d0250552e42bf7cc36479fd38a6e30004c9e8c2b" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.7.16" +version = "0.7.17" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -498,7 +505,7 @@ version = "0.7.16" DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] - DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGPUArraysCoreExt = ["GPUArraysCore", "Adapt"] DifferentiationInterfaceGTPSAExt = "GTPSA" DifferentiationInterfaceMooncakeExt = "Mooncake" DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] @@ -512,6 +519,7 @@ version = "0.7.16" DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] [deps.DifferentiationInterface.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" @@ -548,12 +556,13 @@ weakdeps = ["ChainRulesCore", "SparseArrays"] [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" +git-tree-sha1 = "e421c1938fafab0165b04dc1a9dbe2a26272952c" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.123" +version = "0.25.125" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -571,10 +580,10 @@ uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" version = "0.9.5" [[deps.DomainSets]] -deps = ["CompositeTypes", "IntervalSets", "LinearAlgebra", "StaticArrays"] -git-tree-sha1 = "c249d86e97a7e8398ce2068dce4c078a1c3464de" +deps = ["CompositeTypes", "FunctionMaps", "IntervalSets", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "4599e0cd684f3ff6cbbab73c77553a3d01a8d74d" uuid = "5b8099bc-c8ec-5219-889f-1d9e522a28bf" -version = "0.7.16" +version = "0.7.18" [deps.DomainSets.extensions] DomainSetsMakieExt = "Makie" @@ -590,10 +599,10 @@ uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.6.0" [[deps.DynamicPolynomials]] -deps = ["Future", "LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Reexport", "Test"] -git-tree-sha1 = "3f50fa86c968fc1a9e006c07b6bc40ccbb1b704d" +deps = ["LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Reexport", "StarAlgebras", "Test"] +git-tree-sha1 = "5bfabc3827dfdd164359bad6800c115a81280c00" uuid = "7c1d4256-1411-5781-91ec-d7bc3513ac07" -version = "0.6.4" +version = "0.6.6" [[deps.EnumX]] git-tree-sha1 = "c49898e8438c828577f04b92fc9368c388ac783c" @@ -601,9 +610,9 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.7" [[deps.EnzymeCore]] -git-tree-sha1 = "990991b8aa76d17693a98e3a915ac7aa49f08d1a" +git-tree-sha1 = "c6ee69ee502060982d12dbaaf3d8fcb4e835a0d1" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.8.18" +version = "0.8.20" weakdeps = ["Adapt", "ChainRulesCore"] [deps.EnzymeCore.extensions] @@ -624,19 +633,9 @@ version = "0.1.11" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "27af30de8b5445644e8ffe3bcb0d72049c089cf1" +git-tree-sha1 = "8f05e9a2e7c2e3eb524102bb2926c5743c07fbe1" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.7.3+0" - -[[deps.ExponentialUtilities]] -deps = ["Adapt", "ArrayInterface", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "PrecompileTools", "Printf", "SparseArrays", "libblastrampoline_jll"] -git-tree-sha1 = "cc294ead6a85e975a8519dd4a0a6cb294eeb18d1" -uuid = "d4d017d3-3776-5f7e-afef-a10c40355c18" -version = "1.30.0" -weakdeps = ["StaticArrays"] - - [deps.ExponentialUtilities.extensions] - ExponentialUtilitiesStaticArraysExt = "StaticArrays" +version = "2.8.0+0" [[deps.ExprTools]] git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" @@ -656,27 +655,26 @@ version = "0.4.5" [[deps.FFMPEG_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libva_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "66381d7059b5f3f6162f28831854008040a4e905" +git-tree-sha1 = "cac41ca6b2d399adfc95e51240566f8a60a80806" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "8.0.1+1" +version = "8.1.0+0" [[deps.FastBroadcast]] -deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "ab1b34570bcdf272899062e1a56285a53ecaae08" +deps = ["ArrayInterface", "LinearAlgebra"] +git-tree-sha1 = "7feeed2c9a7fa272189a5561bebf0c4ccaedb6ec" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.3.5" +version = "1.3.2" +weakdeps = ["Polyester", "Static"] + + [deps.FastBroadcast.extensions] + FastBroadcastPolyesterExt = "Polyester" + FastBroadcastStaticExt = "Static" [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" version = "0.3.2" -[[deps.FastGaussQuadrature]] -deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "0044e9f5e49a57e88205e8f30ab73928b05fe5b6" -uuid = "442a2c76-b920-505d-bb47-c5924d526838" -version = "1.1.0" - [[deps.FastPower]] git-tree-sha1 = "862831f78c7a48681a074ecc9aac09f2de563f71" uuid = "a4df4552-cc26-4903-aec0-212e50a0e84b" @@ -702,6 +700,7 @@ version = "1.3.1" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" +version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] @@ -724,9 +723,9 @@ version = "1.8.0" [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "9340ca07ca27093ff68418b7558ca37b05f8aeb1" +git-tree-sha1 = "f7017a4f337f8df189fcce98e32b67a1298a2115" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.29.0" +version = "2.31.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -759,9 +758,9 @@ version = "1.3.7" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "eef4c86803f47dcb61e9b8790ecaa96956fdd8ae" +git-tree-sha1 = "cddeab6487248a39dae1a960fff0ac17b2a28888" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "1.3.2" +version = "1.3.3" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -769,9 +768,9 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "2c5512e11c791d1baed2049c5652441b28fc6a31" +git-tree-sha1 = "70329abc09b886fd2c5d94ad2d9527639c421e3e" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.4+0" +version = "2.14.3+1" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -779,26 +778,42 @@ git-tree-sha1 = "7a214fdac5ed5f59a22c2d9a885a16da1c74bbc7" uuid = "559328eb-81f9-559d-9380-de523a88c83c" version = "1.0.17+0" +[[deps.FunctionMaps]] +deps = ["CompositeTypes", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "31bd99a57edf98990d1c21486032963955450e8d" +uuid = "a85aefff-f8ca-4649-a888-c8e5398bc76c" +version = "0.1.2" + [[deps.FunctionWrappers]] git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" version = "1.1.3" [[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +deps = ["FunctionWrappers", "PrecompileTools", "TruncatedStacktraces"] +git-tree-sha1 = "c1b0c3a166a2a393257aa888787ca817532e14ce" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" +version = "1.8.0" + + [deps.FunctionWrappersWrappers.extensions] + FunctionWrappersWrappersEnzymeExt = ["Enzyme", "EnzymeCore"] + FunctionWrappersWrappersMooncakeExt = "Mooncake" + + [deps.FunctionWrappersWrappers.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" +version = "1.11.0" [[deps.GLFW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] -git-tree-sha1 = "b7bfd56fa66616138dfe5237da4dc13bbd83c67f" +git-tree-sha1 = "9e0fb9e54594c47f278d75063980e43066e26e20" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.4.1+0" +version = "3.4.1+1" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -822,12 +837,6 @@ git-tree-sha1 = "be8a1b8065959e24fdc1b51402f39f3b6f0f6653" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" version = "0.73.24+0" -[[deps.GenericSchur]] -deps = ["LinearAlgebra", "Printf"] -git-tree-sha1 = "a694e2a57394e409f7a11ee0977362a9fafcb8c7" -uuid = "c145ed77-6b09-5dd9-b285-bf645a82121e" -version = "0.5.6" - [[deps.GettextRuntime_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll"] git-tree-sha1 = "45288942190db7c5f760f59c04495064eedf9340" @@ -854,9 +863,9 @@ version = "3.7.0+0" [[deps.Git_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "dc34a3e3d96b4ed305b641e626dc14c12b7824b8" +git-tree-sha1 = "0dd4cfb426924210c8f42742751cbde74b27bfa3" uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb" -version = "2.53.0+0" +version = "2.54.0+0" [[deps.Glib_jll]] deps = ["Artifacts", "GettextRuntime_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] @@ -936,9 +945,14 @@ version = "0.1.1" [[deps.ImplicitDiscreteSolve]] deps = ["ConcreteStructs", "DiffEqBase", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "OrdinaryDiffEqCore", "Reexport", "SciMLBase", "SymbolicIndexingInterface"] -git-tree-sha1 = "80e108544e96389133758dd014b503d8df3cedb8" +git-tree-sha1 = "dc9f649cbcdd4f2b402d7cbbd5cf61517b45ad5a" uuid = "3263718b-31ed-49cf-8a0f-35a466e8af96" -version = "1.8.0" +version = "2.0.0" + +[[deps.Indexing]] +git-tree-sha1 = "ce1566720fd6b19ff3411404d4b977acd4814f9f" +uuid = "313cdc1a-70c2-5d6a-ae34-0150d3930a38" +version = "1.1.1" [[deps.Inflate]] git-tree-sha1 = "d1b1b796e47d94588b3757fe84fbf65a5ec4a80d" @@ -959,6 +973,7 @@ version = "2025.2.0+0" [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" +version = "1.11.0" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] @@ -975,9 +990,9 @@ version = "0.16.2" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.IntervalSets]] -git-tree-sha1 = "d966f85b3b7a8e49d034d27a189e9a4874b4391a" +git-tree-sha1 = "79d6bd28c8d9bccc2229784f1bd637689b256377" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.13" +version = "0.7.14" weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] @@ -1031,15 +1046,15 @@ version = "0.2.1" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "b6893345fd6658c8e475d40155789f4860ac3b21" +git-tree-sha1 = "c0c9b76f3520863909825cbecdef58cd63de705a" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.1.4+0" +version = "3.1.5+0" [[deps.JumpProcesses]] deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "PoissonRandom", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "SymbolicIndexingInterface"] -git-tree-sha1 = "1d9e36e530080a9f097de67c2576c3f83d418dd0" +git-tree-sha1 = "2a8e5b9b90ef0da05f61904d0a39a7b1c0a83310" uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" -version = "9.23.2" +version = "9.28.0" [deps.JumpProcesses.extensions] JumpProcessesKernelAbstractionsExt = ["Adapt", "KernelAbstractions"] @@ -1047,7 +1062,6 @@ version = "9.23.2" [deps.JumpProcesses.weakdeps] Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" - FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" OrdinaryDiffEqCore = "bbf590c4-e513-4bbe-9b18-05decba2e5d8" @@ -1065,9 +1079,9 @@ version = "3.100.3+0" [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "aaafe88dccbd957a8d82f7d05be9b69172e0cee3" +git-tree-sha1 = "17b94ecafcfa45e8360a4fc9ca6b583b049e4e37" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "4.0.1+0" +version = "4.1.0+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1075,12 +1089,6 @@ git-tree-sha1 = "eb62a3deb62fc6d8822c0c4bef73e4412419c5d8" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" version = "18.1.8+0" -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "1c602b1127f4751facb671441ca72715cc95938a" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.3+0" - [[deps.LaTeXStrings]] git-tree-sha1 = "dda21b8cbd6a6c40d9d02a73230f9d70fed6918c" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" @@ -1113,6 +1121,7 @@ version = "0.1.17" [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" +version = "1.11.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] @@ -1122,16 +1131,17 @@ version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.4.0+0" +version = "8.6.0+0" [[deps.LibGit2]] deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +version = "1.11.0" [[deps.LibGit2_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.6.4+0" +version = "1.7.2+0" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] @@ -1140,6 +1150,7 @@ version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" +version = "1.11.0" [[deps.Libffi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1161,9 +1172,9 @@ version = "1.18.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "97bbca976196f2a1eb9607131cb108c69ec3f8a6" +git-tree-sha1 = "cc3ad4faf30015a3e8094c9b5b7f19e85bdf2386" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] @@ -1173,15 +1184,15 @@ version = "4.7.2+0" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d0205286d9eceadc518742860bf23f703779a3d6" +git-tree-sha1 = "d620582b1f0cbe2c72dd1d5bd195a9ce73370ab1" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.LineSearch]] deps = ["ADTypes", "CommonSolve", "ConcreteStructs", "FastClosures", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "SciMLBase", "SciMLJacobianOperators", "StaticArraysCore"] -git-tree-sha1 = "9f7253c0574b4b585c8909232adb890930da980a" +git-tree-sha1 = "fd58a77c92e7c8f1db25c9839127d52943a49349" uuid = "87fe0de2-c867-4266-b59a-2f0a94fc965b" -version = "0.1.6" +version = "0.1.9" weakdeps = ["LineSearches"] [deps.LineSearch.extensions] @@ -1196,12 +1207,13 @@ version = "7.5.1" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +version = "1.11.0" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "57a7bea58da7de6906f2621294ea35656cb40c5f" +deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] +git-tree-sha1 = "42b5cb44317e89ef75dd841c9c8eba9045bf9ff0" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "3.66.0" +version = "3.75.0" [deps.LinearSolve.extensions] LinearSolveAMDGPUExt = "AMDGPU" @@ -1212,7 +1224,9 @@ version = "3.66.0" LinearSolveCUDAExt = "CUDA" LinearSolveCUDSSExt = "CUDSS" LinearSolveCUSOLVERRFExt = ["CUSOLVERRF", "SparseArrays"] + LinearSolveChainRulesCoreExt = "ChainRulesCore" LinearSolveCliqueTreesExt = ["CliqueTrees", "SparseArrays"] + LinearSolveElementalExt = "Elemental" LinearSolveEnzymeExt = ["EnzymeCore", "SparseArrays"] LinearSolveFastAlmostBandedMatricesExt = "FastAlmostBandedMatrices" LinearSolveFastLapackInterfaceExt = "FastLapackInterface" @@ -1224,7 +1238,9 @@ version = "3.66.0" LinearSolveKrylovKitExt = "KrylovKit" LinearSolveMetalExt = "Metal" LinearSolveMooncakeExt = "Mooncake" + LinearSolvePETScCSRExt = ["PETSc", "SparseArrays", "SparseMatricesCSR"] LinearSolvePETScExt = ["PETSc", "SparseArrays"] + LinearSolvePETScMPIExt = ["PETSc", "PartitionedArrays", "SparseArrays", "SparseMatricesCSR"] LinearSolveParUExt = ["ParU_jll", "SparseArrays"] LinearSolvePardisoExt = ["Pardiso", "SparseArrays"] LinearSolveRecursiveFactorizationExt = "RecursiveFactorization" @@ -1239,7 +1255,9 @@ version = "3.66.0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" CUSOLVERRF = "a8cc9031-bad2-4722-94f5-40deabb4245c" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" + Elemental = "902c3f28-d1ec-5e7e-8399-a24c3845ee38" EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" FastLapackInterface = "29a986be-02c6-4525-aec4-84b980013641" @@ -1255,8 +1273,10 @@ version = "3.66.0" PETSc = "ace2c81b-2b5f-4b1e-a30d-d662738edfe0" ParU_jll = "9e0b026c-e8ce-559c-a2c4-6a3d5c955bc9" Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" + PartitionedArrays = "5a9dfac6-5c52-46f7-8278-5e2210713be9" RecursiveFactorization = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseMatricesCSR = "a0a7dd2c-ebf4-11e9-1f05-cf50bc540ca1" Sparspak = "e56a9233-b9d6-4f03-8d0f-1825330902ac" blis_jll = "6136c539-28a5-5bf0-87cc-b183200dce32" @@ -1278,6 +1298,7 @@ version = "0.3.29" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" +version = "1.11.0" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] @@ -1321,6 +1342,7 @@ version = "0.1.8" [[deps.Markdown]] deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +version = "1.11.0" [[deps.MaybeInplace]] deps = ["ArrayInterface", "LinearAlgebra", "MacroTools"] @@ -1341,7 +1363,7 @@ version = "1.1.10" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.1010+0" +version = "2.28.6+0" [[deps.Measures]] git-tree-sha1 = "b513cedd20d9c914783d8ad83d08120702bf2c77" @@ -1350,9 +1372,9 @@ version = "0.3.3" [[deps.MethodOfLines]] deps = ["Combinatorics", "DiffEqBase", "DomainSets", "IfElse", "Interpolations", "Latexify", "LinearAlgebra", "ModelingToolkit", "OrdinaryDiffEq", "PDEBase", "PrecompileTools", "RuntimeGeneratedFunctions", "SciMLBase", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics"] -git-tree-sha1 = "19acd88632ec1540b38b8e44148a7e0c11e2f068" +git-tree-sha1 = "9956fdf30e0555a111b6a7f985497fec351b1a08" uuid = "94925ecb-adb7-4558-8ed8-f975c56a0bf4" -version = "0.11.11" +version = "0.11.12" [[deps.Missings]] deps = ["DataAPI"] @@ -1362,12 +1384,13 @@ version = "1.2.0" [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" +version = "1.11.0" [[deps.ModelingToolkit]] -deps = ["ADTypes", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "ConstructionBase", "DataStructures", "DiffEqBase", "DifferentiationInterface", "DocStringExtensions", "FillArrays", "FindFirstFunctions", "ForwardDiff", "Graphs", "InteractiveUtils", "Libdl", "LinearAlgebra", "ModelingToolkitBase", "ModelingToolkitTearing", "Moshi", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "StateSelection", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] -git-tree-sha1 = "8a8425f770317bd9a14200bf57f2462c6ce846d3" +deps = ["ADTypes", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "ConstructionBase", "DataStructures", "DiffEqBase", "DifferentiationInterface", "DocStringExtensions", "FillArrays", "ForwardDiff", "Graphs", "InteractiveUtils", "Libdl", "LinearAlgebra", "ModelingToolkitBase", "ModelingToolkitTearing", "Moshi", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "StateSelection", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] +git-tree-sha1 = "76bf90b282af752d3402eaac895aeb0edcd9a21c" uuid = "961ee093-0014-501f-94e3-6117800e7a78" -version = "11.17.0" +version = "11.25.0" [deps.ModelingToolkit.extensions] MTKFMIExt = "FMIImport" @@ -1382,10 +1405,10 @@ version = "11.17.0" OrdinaryDiffEqRosenbrock = "43230ef6-c299-4910-a778-202eb28ce4ce" [[deps.ModelingToolkitBase]] -deps = ["ADTypes", "AbstractTrees", "ArrayInterface", "BandedMatrices", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffRules", "DifferentiationInterface", "DocStringExtensions", "DomainSets", "EnumX", "EnzymeCore", "ExprTools", "FillArrays", "FindFirstFunctions", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "ImplicitDiscreteSolve", "InteractiveUtils", "JumpProcesses", "Libdl", "LinearAlgebra", "Moshi", "NaNMath", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Random", "ReadOnlyDicts", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] -git-tree-sha1 = "0967487a5375f4b51ddc503d7a19f325094d212e" +deps = ["ADTypes", "AbstractTrees", "ArrayInterface", "BandedMatrices", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffRules", "DifferentiationInterface", "DocStringExtensions", "DomainSets", "EnumX", "EnzymeCore", "ExprTools", "FillArrays", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "ImplicitDiscreteSolve", "InteractiveUtils", "JumpProcesses", "Libdl", "LinearAlgebra", "Moshi", "NaNMath", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Random", "ReadOnlyDicts", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] +git-tree-sha1 = "48b65d18b9731f427ed33f5e8e4ee3cd7a653741" uuid = "7771a370-6774-4173-bd38-47e70ca0b839" -version = "1.24.0" +version = "1.34.0" [deps.ModelingToolkitBase.extensions] MTKBifurcationKitExt = "BifurcationKit" @@ -1415,9 +1438,9 @@ version = "1.24.0" [[deps.ModelingToolkitTearing]] deps = ["BipartiteGraphs", "CommonSolve", "DocStringExtensions", "Graphs", "LinearAlgebra", "ModelingToolkitBase", "Moshi", "OffsetArrays", "OrderedCollections", "SciMLBase", "Setfield", "SparseArrays", "StateSelection", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UUIDs"] -git-tree-sha1 = "85205b6ac778a6acfd6190cb2579214d114f6daf" +git-tree-sha1 = "3ad8028ba31ef212307586416f1b341b5e8d4eb9" uuid = "6bb917b9-1269-42b9-9f7c-b0dca72083ab" -version = "1.9.0" +version = "1.13.3" [[deps.Moshi]] deps = ["ExproniconLite", "Jieko"] @@ -1427,7 +1450,7 @@ version = "0.3.7" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2025.12.2" +version = "2023.12.12" [[deps.MuladdMacro]] git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" @@ -1435,10 +1458,10 @@ uuid = "46d2c3a1-f734-5fdb-9937-b9b9aeba4221" version = "0.2.4" [[deps.MultivariatePolynomials]] -deps = ["DataStructures", "LinearAlgebra", "MutableArithmetics"] -git-tree-sha1 = "139071bb741eeaa3ee7d4109f1299e9282882d79" +deps = ["DataStructures", "LinearAlgebra", "MutableArithmetics", "StarAlgebras"] +git-tree-sha1 = "4838893d9b035c2f6967c0d533350e1755b58a70" uuid = "102ac46a-7ee4-5c85-9060-abc95bfdeaa3" -version = "0.5.14" +version = "0.5.19" weakdeps = ["ChainRulesCore"] [deps.MultivariatePolynomials.extensions] @@ -1452,9 +1475,9 @@ version = "1.0.21" [[deps.MutableArithmetics]] deps = ["LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "22df8573f8e7c593ac205455ca088989d0a2c7a0" +git-tree-sha1 = "7c25249fc13a070f5ba433c50e21e22bb33c6fb0" uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" -version = "1.6.7" +version = "1.7.1" [[deps.NLSolversBase]] deps = ["ADTypes", "DifferentiationInterface", "Distributed", "FiniteDiff", "ForwardDiff"] @@ -1479,10 +1502,10 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.NonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SciMLLogging", "SimpleNonlinearSolve", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "d27bcf0cebf8786edcc2eaa4455c959e680334e7" +deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SciMLLogging", "Setfield", "SimpleNonlinearSolve", "StaticArraysCore", "SymbolicIndexingInterface"] +git-tree-sha1 = "ae0b0f875e4dfda538ab6977ec7939126ee9a1fe" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "4.16.0" +version = "4.19.0" [deps.NonlinearSolve.extensions] NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" @@ -1512,10 +1535,10 @@ version = "4.16.0" Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" [[deps.NonlinearSolveBase]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "LinearAlgebra", "LogExpFunctions", "Markdown", "MaybeInplace", "PreallocationTools", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "4f595a0977d6e048fa1e3c382b088b950f8c7934" +deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "LogExpFunctions", "Markdown", "MaybeInplace", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] +git-tree-sha1 = "a19a5df29ef2b197499fc631fa1a59385ae15262" uuid = "be0214bd-f91f-a760-ac4e-3421ce2b2da0" -version = "2.15.0" +version = "2.25.0" [deps.NonlinearSolveBase.extensions] NonlinearSolveBaseBandedMatricesExt = "BandedMatrices" @@ -1545,15 +1568,15 @@ version = "2.15.0" [[deps.NonlinearSolveFirstOrder]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConcreteStructs", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLJacobianOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "eea7cbe389b168c77df7ff779fb7277019c685c8" +git-tree-sha1 = "ce68820a4f421fb5bee7ec4dcf875aff33886bfb" uuid = "5959db7a-ea39-4486-b5fe-2dd0bf03d60d" -version = "2.0.0" +version = "2.1.1" [[deps.NonlinearSolveQuasiNewton]] deps = ["ArrayInterface", "CommonSolve", "ConcreteStructs", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLOperators", "StaticArraysCore"] -git-tree-sha1 = "ade27e8e9566b6cec63ee62f6a6650a11cf9a2eb" +git-tree-sha1 = "538432ca1aea8bf63db02929bf870501f8a7c64c" uuid = "9a2c21bd-3a47-402d-9113-8faf9a0ee114" -version = "1.12.0" +version = "1.13.1" weakdeps = ["ForwardDiff"] [deps.NonlinearSolveQuasiNewton.extensions] @@ -1561,9 +1584,9 @@ weakdeps = ["ForwardDiff"] [[deps.NonlinearSolveSpectralMethods]] deps = ["CommonSolve", "ConcreteStructs", "LineSearch", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "eafd027b5cd768f19bb5de76c0e908a9065ddd36" +git-tree-sha1 = "a3781e12becdf0ce5520bd97ec617e879bf4e9f2" uuid = "26075421-4e9a-44e1-8bd1-420ed7ad02b2" -version = "1.6.0" +version = "1.7.1" weakdeps = ["ForwardDiff"] [deps.NonlinearSolveSpectralMethods.extensions] @@ -1586,14 +1609,14 @@ version = "1.3.6+0" [[deps.OpenBLAS32_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6065c4cff8fee6c6770b277af45d5082baacdba1" +git-tree-sha1 = "dd0d9979377e43918a80486a562ddedcc6d9bdf3" uuid = "656ef2d0-ae68-5445-9ca0-591084a874a2" -version = "0.3.24+0" +version = "0.3.33+0" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.23+5" +version = "0.3.27+1" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] @@ -1602,9 +1625,9 @@ version = "0.8.5+0" [[deps.OpenSSH_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "OpenSSL_jll", "Zlib_jll"] -git-tree-sha1 = "301412a644646fdc0ad67d0a87487466b491e53d" +git-tree-sha1 = "57baa4b81a24c2910afbb6d853aa0685e4312bf7" uuid = "9bd350c2-7e96-507f-8002-3f2e150b4e1b" -version = "10.2.1+0" +version = "10.3.1+0" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "NetworkOptions", "OpenSSL_jll", "Sockets"] @@ -1614,9 +1637,9 @@ version = "1.6.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "c9cbeda6aceffc52d8a0017e71db27c7a7c0beaf" +git-tree-sha1 = "2ac022577e5eac7da040de17776d51bb770cd895" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.5.5+0" +version = "3.5.6+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -1636,28 +1659,22 @@ uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.8.1" [[deps.OrdinaryDiffEq]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FillArrays", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "MacroTools", "MuladdMacro", "NonlinearSolve", 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"StaticArrays"] -git-tree-sha1 = "d156a972fa7bc37bf8377d33a7d51d152e354d4c" -uuid = "358294b1-0aab-51c3-aafe-ad5ab194a2ad" -version = "1.8.0" - -[[deps.OrdinaryDiffEqSymplecticRK]] -deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "RecursiveArrayTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "9b783806fe2dc778649231cb3932cb71b63222d9" -uuid = "fa646aed-7ef9-47eb-84c4-9443fc8cbfa8" -version = "1.11.0" +version = "2.0.0" [[deps.OrdinaryDiffEqTsit5]] -deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static", "TruncatedStacktraces"] -git-tree-sha1 = "8be4cba85586cd2efa6c76d1792c548758610901" +deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "d9cedcfa2cdae8859b4510b9d01ada9852cd6d9d" uuid = "b1df2697-797e-41e3-8120-5422d3b24e4a" -version = "1.9.0" +version = "2.0.0" [[deps.OrdinaryDiffEqVerner]] -deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static", "TruncatedStacktraces"] -git-tree-sha1 = "5ca5dbbfea89e14f283ce9fe2301c528ff4ec007" +deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "fb8ae6a290beed2ef61fa2e7571d921e1100c365" uuid = "79d7bb75-1356-48c1-b8c0-6832512096c2" -version = "1.11.0" +version = "2.0.0" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -1840,15 +1742,13 @@ version = "10.42.0+1" [[deps.PDEBase]] deps = ["DomainSets", "ModelingToolkit", "PrecompileTools", "SciMLBase", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics"] -git-tree-sha1 = "cbd53a441ed933eff3bb89c1974b3ac986a378d3" +git-tree-sha1 = "5bc617e9282d047a76990e5fe07cec14a99274ea" uuid = "a7812802-0625-4b9e-961c-d332478797e5" -version = "0.1.22" +version = "0.1.23" [[deps.PDESystemLibrary]] -deps = ["DomainSets", "IfElse", "Interpolations", "Markdown", "ModelingToolkit", "OrdinaryDiffEq", "Random", "SciMLBase"] -git-tree-sha1 = "1545bf504279a39ea0eb49583f0a01655a64cd13" -repo-rev = "master" -repo-url = "https://github.com/SciML/PDESystemLibrary.jl" +deps = ["DomainSets", "IfElse", "Interpolations", "Markdown", "ModelingToolkit", "OrdinaryDiffEq", "OrdinaryDiffEqSDIRK", "Random", "SciMLBase"] +git-tree-sha1 = "08f1d43b1533c9de4ad1b1e03d93f38f89521f5a" uuid = "d14f9848-fe58-4297-bd22-c1aba6f3000d" version = "0.1.1" @@ -1864,15 +1764,15 @@ weakdeps = ["StatsBase"] [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "0662b083e11420952f2e62e17eddae7fc07d5997" +git-tree-sha1 = "58e5ed5e386e156bd93e86b305ebd21ac63d2d04" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" -version = "1.57.0+0" +version = "1.57.1+0" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "7d2f8f21da5db6a806faf7b9b292296da42b2810" +git-tree-sha1 = "5d5e0a78e971354b1c7bff0655d11fdc1b0e12c8" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.3" +version = "2.8.4" [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] @@ -1881,9 +1781,13 @@ uuid = "30392449-352a-5448-841d-b1acce4e97dc" version = "0.44.2+0" [[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.10.0" +version = "1.11.0" +weakdeps = ["REPL"] + + [deps.Pkg.extensions] + REPLExt = "REPL" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1937,9 +1841,9 @@ version = "0.2.2" [[deps.PreallocationTools]] deps = ["Adapt", "ArrayInterface", "PrecompileTools"] -git-tree-sha1 = "dc8d6bde5005a0eac05ae8faf1eceaaca166cfa4" +git-tree-sha1 = "e16b73bf892c55d16d53c9c0dbd0fb31cb7e25da" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "1.1.2" +version = "1.2.0" [deps.PreallocationTools.extensions] PreallocationToolsForwardDiffExt = "ForwardDiff" @@ -1972,6 +1876,7 @@ version = "0.5.7" [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" +version = "1.11.0" [[deps.PtrArrays]] git-tree-sha1 = "4fbbafbc6251b883f4d2705356f3641f3652a7fe" @@ -2010,9 +1915,9 @@ version = "6.10.2+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9da16da70037ba9d701192e27befedefb91ec284" +git-tree-sha1 = "5e8e8b0ab68215d7a2b14b9921a946fee794749e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.11.2" +version = "2.11.3" [deps.QuadGK.extensions] QuadGKEnzymeExt = "Enzyme" @@ -2021,12 +1926,14 @@ version = "2.11.2" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" [[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" +version = "1.11.0" [[deps.Random]] deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +version = "1.11.0" [[deps.Ratios]] deps = ["Requires"] @@ -2063,16 +1970,19 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "LinearAlgebra", "PrecompileTools", "RecipesBase", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "18d2a6fd1ea9a8205cadb3a5704f8e51abdd748b" +git-tree-sha1 = "57b6fb3932fc8d1fc911f840d2c9de5fe3ba5008" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.48.0" +version = "4.3.0" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsCUDAExt = "CUDA" RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsFastBroadcastPolyesterExt = ["FastBroadcast", "Polyester"] RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsKernelAbstractionsExt = "KernelAbstractions" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsMooncakeExt = "Mooncake" RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] RecursiveArrayToolsStatisticsExt = "Statistics" @@ -2082,11 +1992,14 @@ version = "3.48.0" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" @@ -2148,15 +2061,15 @@ weakdeps = ["Plots"] [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "7257165d5477fd1025f7cb656019dcb6b0512c38" +git-tree-sha1 = "cfcdc949c4660544ab0fdeed169561cb22f835f4" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.17" +version = "0.5.18" [[deps.SCCNonlinearSolve]] deps = ["CommonSolve", "PrecompileTools", "Reexport", "SciMLBase", "SymbolicIndexingInterface"] -git-tree-sha1 = "b1fed39f2acdd4524c17b50ce6f4406be61b936d" +git-tree-sha1 = "521a298294a6fd11068df0148b4d57bb31550453" uuid = "9dfe8606-65a1-4bb3-9748-cb89d1561431" -version = "1.11.0" +version = "1.13.0" weakdeps = ["ChainRulesCore"] [deps.SCCNonlinearSolve.extensions] @@ -2178,10 +2091,10 @@ uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" version = "0.6.43" [[deps.SciMLBase]] -deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Moshi", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "0be0208add9b6836a701e0ac3ad30bda72fee51d" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "Random", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] +git-tree-sha1 = "450a8405f96d0a7c6caabed0852def06ba8c6bf1" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.150.0" +version = "3.7.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2189,7 +2102,6 @@ version = "2.150.0" SciMLBaseDistributionsExt = "Distributions" SciMLBaseEnzymeExt = "Enzyme" SciMLBaseForwardDiffExt = "ForwardDiff" - SciMLBaseMLStyleExt = "MLStyle" SciMLBaseMakieExt = "Makie" SciMLBaseMeasurementsExt = "Measurements" SciMLBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" @@ -2209,7 +2121,6 @@ version = "2.150.0" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - MLStyle = "d8e11817-5142-5d16-987a-aa16d5891078" Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" @@ -2230,9 +2141,9 @@ version = "0.1.3" [[deps.SciMLJacobianOperators]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DifferentiationInterface", "FastClosures", "LinearAlgebra", "SciMLBase", "SciMLOperators"] -git-tree-sha1 = "e96d5e96debf7f80a50d0b976a13dea556ccfd3a" +git-tree-sha1 = "7156a5b51cba1bea33a82a036939ead4131f92bc" uuid = "19f34311-ddf3-4b8b-af20-060888a46c0e" -version = "0.1.12" +version = "0.1.13" [[deps.SciMLLogging]] deps = ["Logging", "LoggingExtras", "Preferences"] @@ -2248,9 +2159,9 @@ version = "1.9.1" [[deps.SciMLOperators]] deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra"] -git-tree-sha1 = "794c760e6aafe9f40dcd7dd30526ea33f0adc8b7" +git-tree-sha1 = "4a3bd21622633a70fde04bc6d072f59e482ff66f" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "1.15.1" +version = "1.18.0" weakdeps = ["SparseArrays", "StaticArraysCore"] [deps.SciMLOperators.extensions] @@ -2276,6 +2187,7 @@ version = "1.3.0" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" +version = "1.11.0" [[deps.Setfield]] deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] @@ -2286,6 +2198,7 @@ version = "1.1.2" [[deps.SharedArrays]] deps = ["Distributed", "Mmap", "Random", "Serialization"] uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" +version = "1.11.0" [[deps.Showoff]] deps = ["Dates", "Grisu"] @@ -2300,9 +2213,9 @@ version = "1.2.0" [[deps.SimpleNonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "744c3f0fb186ad28376199c1e72ca39d0c614b5d" +git-tree-sha1 = "d688de789b7e643326caf9a1051376dadbcd8873" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "2.11.0" +version = "2.11.1" [deps.SimpleNonlinearSolve.extensions] SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" @@ -2322,6 +2235,7 @@ version = "0.9.5" [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" +version = "1.11.0" [[deps.SortingAlgorithms]] deps = ["DataStructures"] @@ -2332,7 +2246,7 @@ version = "1.2.2" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -version = "1.10.0" +version = "1.11.0" [[deps.SparseBandedMatrices]] deps = ["LinearAlgebra", "PrecompileTools"] @@ -2342,28 +2256,31 @@ version = "1.3.0" [[deps.SparseMatrixColorings]] deps = ["ADTypes", "DocStringExtensions", "LinearAlgebra", "PrecompileTools", "Random", "SparseArrays"] -git-tree-sha1 = "fa43a02c01e3e3cb065c89bf9b648b89e3c06f18" +git-tree-sha1 = "f63d76c7b7c329cf11badd564fd8ba877b09c3fe" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.4.25" +version = "0.4.27" [deps.SparseMatrixColorings.extensions] - SparseMatrixColoringsCUDAExt = "CUDA" + SparseMatrixColoringsCUDAExt = ["CUDA", "cuSPARSE"] SparseMatrixColoringsCliqueTreesExt = "CliqueTrees" SparseMatrixColoringsColorsExt = "Colors" + SparseMatrixColoringsGPUArraysExt = "GPUArrays" SparseMatrixColoringsJuMPExt = ["JuMP", "MathOptInterface"] [deps.SparseMatrixColorings.weakdeps] CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" + GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" JuMP = "4076af6c-e467-56ae-b986-b466b2749572" MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" + cuSPARSE = "b26da814-b3bc-49ef-b0ee-c816305aa060" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "5acc6a41b3082920f79ca3c759acbcecf18a8d78" +git-tree-sha1 = "2700b235561b0335d5bef7097a111dc513b8655e" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.7.1" +version = "2.7.2" weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] @@ -2375,11 +2292,17 @@ git-tree-sha1 = "4f96c596b8c8258cc7d3b19797854d368f243ddc" uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" version = "1.0.4" +[[deps.StarAlgebras]] +deps = ["LinearAlgebra", "MutableArithmetics", "SparseArrays"] +git-tree-sha1 = "235b1f9d287bbf34083b3d0829343a7942c0ad1c" +uuid = "0c0c59c1-dc5f-42e9-9a8b-b5dc384a6cd1" +version = "0.3.0" + [[deps.StateSelection]] deps = ["BipartiteGraphs", "DocStringExtensions", "FindFirstFunctions", "Graphs", "LinearAlgebra", "OrderedCollections", "Setfield", "SparseArrays"] -git-tree-sha1 = "ae58a0d7f72dd4bb77574d8247b84b11f5517aea" +git-tree-sha1 = "824641f6d414f0885200e034e3853c3c2f61ac43" uuid = "64909d44-ed92-46a8-bbd9-f047dfbdc84b" -version = "1.5.1" +version = "1.9.2" [deps.StateSelection.extensions] StateSelectionDeepDiffsExt = "DeepDiffs" @@ -2389,15 +2312,15 @@ version = "1.5.1" [[deps.Static]] deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools", "SciMLPublic"] -git-tree-sha1 = "49440414711eddc7227724ae6e570c7d5559a086" +git-tree-sha1 = "bb072715f158b59ad8819ff80da5ffa90cce6ceb" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.3.1" +version = "1.4.0" [[deps.StaticArrayInterface]] deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "SciMLPublic", "Static"] -git-tree-sha1 = "aa1ea41b3d45ac449d10477f65e2b40e3197a0d2" +git-tree-sha1 = "2a635e15d5035c53b345077c947f31ff91744078" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.9.0" +version = "1.10.0" weakdeps = ["OffsetArrays", "StaticArrays"] [deps.StaticArrayInterface.extensions] @@ -2421,9 +2344,14 @@ uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" version = "1.4.4" [[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] +deps = ["LinearAlgebra"] +git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.10.0" +version = "1.11.1" +weakdeps = ["SparseArrays"] + + [deps.Statistics.extensions] + SparseArraysExt = ["SparseArrays"] [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -2450,9 +2378,9 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] [[deps.StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "83151ba8065a73f53ca2ae98bc7274d817aa30f2" +git-tree-sha1 = "5316097111523c9a970596a5b33cfea5f92e8581" uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.5.8" +version = "0.5.9" [[deps.StringEncodings]] deps = ["Libiconv_jll"] @@ -2462,9 +2390,9 @@ version = "0.3.7" [[deps.StructArrays]] deps = ["ConstructionBase", "DataAPI", "Tables"] -git-tree-sha1 = "a2c37d815bf00575332b7bd0389f771cb7987214" +git-tree-sha1 = "ad8002667372439f2e3611cfd14097e03fa4bccd" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.7.2" +version = "0.7.3" [deps.StructArrays.extensions] StructArraysAdaptExt = "Adapt" @@ -2481,26 +2409,30 @@ version = "0.7.2" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" + [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse32_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "94fcd6e398534febe67795e7df45c76aa3c34851" +deps = ["Artifacts", "JLLWrappers", "Libdl", "libblastrampoline_jll"] +git-tree-sha1 = "1d43a4874b879f381b8a3a978f0ebe837cfd0922" uuid = "ca45d3f4-326b-53b0-9957-23b75aacb3f2" -version = "5.10.1+0" +version = "7.12.1+0" [[deps.SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "7.2.1+1" +version = "7.7.0+0" [[deps.Sundials]] -deps = ["Accessors", "ArrayInterface", "CEnum", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "LinearSolve", "Logging", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SparseArrays", "Sundials_jll", "SymbolicIndexingInterface"] -git-tree-sha1 = "2d27edb89b7c555a57b8f22bfde92d6828d11cee" +deps = ["Accessors", "ArrayInterface", "CEnum", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "LinearSolve", "Logging", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLLogging", "SparseArrays", "Sundials_jll", "SymbolicIndexingInterface"] +git-tree-sha1 = "4853f12fa4333ab235d939a6d38b368d35f2f492" uuid = "c3572dad-4567-51f8-b174-8c6c989267f4" -version = "5.1.0" +version = "6.1.0" [[deps.Sundials_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS32_jll", "SuiteSparse32_jll"] @@ -2527,10 +2459,10 @@ uuid = "19f23fe9-fdab-4a78-91af-e7b7767979c3" version = "1.1.0" [[deps.SymbolicUtils]] -deps = ["AbstractTrees", "ArrayInterface", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "EnumX", "ExproniconLite", "LinearAlgebra", "MacroTools", "Moshi", "MultivariatePolynomials", "MutableArithmetics", "NaNMath", "PrecompileTools", "ReadOnlyArrays", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "TaskLocalValues", "TermInterface", "WeakCacheSets"] -git-tree-sha1 = "0ed9311359e871309a5af77eb614836bd8097259" +deps = ["AbstractTrees", "ArrayInterface", "Combinatorics", "ConstructionBase", "DataStructures", "Dictionaries", "DocStringExtensions", "DynamicPolynomials", "EnumX", "ExproniconLite", "Graphs", "LinearAlgebra", "MacroTools", "Moshi", "MultivariatePolynomials", "MutableArithmetics", "NaNMath", "PrecompileTools", "ReadOnlyArrays", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "TaskLocalValues", "TermInterface", "WeakCacheSets"] +git-tree-sha1 = "a768eebd98bee75a02e4cb9891fd9d999673b62f" uuid = "d1185830-fcd6-423d-90d6-eec64667417b" -version = "4.20.2" +version = "4.27.0" [deps.SymbolicUtils.extensions] SymbolicUtilsChainRulesCoreExt = "ChainRulesCore" @@ -2546,9 +2478,9 @@ version = "4.20.2" [[deps.Symbolics]] deps = ["ADTypes", "AbstractPlutoDingetjes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "Moshi", "MultivariatePolynomials", "MutableArithmetics", "NaNMath", "PrecompileTools", "Preferences", "Primes", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLPublic", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] -git-tree-sha1 = "0a3bbbf97e7204e93b3a9f4c392d2df41069c3ed" +git-tree-sha1 = "85bb4be51a7e90e531b1faa926b9497f436ca535" uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7" -version = "7.16.0" +version = "7.21.0" [deps.Symbolics.extensions] SymbolicsD3TreesExt = "D3Trees" @@ -2618,6 +2550,7 @@ version = "2.0.0" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" +version = "1.11.0" [[deps.ThreadingUtilities]] deps = ["ManualMemory"] @@ -2662,6 +2595,7 @@ version = "1.6.1" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +version = "1.11.0" [[deps.UnPack]] git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" @@ -2670,6 +2604,7 @@ version = "1.0.2" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +version = "1.11.0" [[deps.UnicodeFun]] deps = ["REPL"] @@ -2734,9 +2669,9 @@ version = "1.1.0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "9cce64c0fdd1960b597ba7ecda2950b5ed957438" +git-tree-sha1 = "b29c22e245d092b8b4e8d3c09ad7baa586d9f573" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.8.2+0" +version = "5.8.3+0" [[deps.Xorg_libICE_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2812,9 +2747,9 @@ version = "0.9.12+0" [[deps.Xorg_libpciaccess_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "4909eb8f1cbf6bd4b1c30dd18b2ead9019ef2fad" +git-tree-sha1 = "58972370b81423fc546c56a60ed1a009450177c3" uuid = "a65dc6b1-eb27-53a1-bb3e-dea574b5389e" -version = "0.18.1+0" +version = "0.19.0+0" [[deps.Xorg_libxcb_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXau_jll", "Xorg_libXdmcp_jll"] @@ -2872,9 +2807,9 @@ version = "1.4.7+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "00af7ebdc563c9217ecc67776d1bbf037dbcebf4" +git-tree-sha1 = "429722587208f02b1cecbddcd20133df2f1ed796" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.44.0+0" +version = "2.47.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2925,9 +2860,9 @@ version = "0.61.1+0" [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" +git-tree-sha1 = "850b06095ee71f0135d644ffd8a52850699581ed" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.13.1+0" +version = "3.13.3+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] @@ -2972,9 +2907,9 @@ version = "1.28.1+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" +git-tree-sha1 = "e51150d5ab85cee6fc36726850f0e627ad2e4aba" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.55+0" +version = "1.6.58+0" [[deps.libsodium_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -3003,7 +2938,7 @@ version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.52.0+1" +version = "1.59.0+0" [[deps.oneTBB_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] @@ -3014,7 +2949,7 @@ version = "2022.0.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.6.1+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] diff --git a/benchmarks/MethodOfLinesPDE/Project.toml b/benchmarks/MethodOfLinesPDE/Project.toml index 4c1593f6c..be10b168b 100644 --- a/benchmarks/MethodOfLinesPDE/Project.toml +++ b/benchmarks/MethodOfLinesPDE/Project.toml @@ -12,14 +12,14 @@ SciMLBenchmarks = "31c91b34-3c75-11e9-0341-95557aab0344" Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" [compat] -DiffEqDevTools = "2" +DiffEqDevTools = "3" DomainSets = "0.7" LinearSolve = "3" MethodOfLines = "0.11" ModelingToolkit = "11" -OrdinaryDiffEq = "6" +OrdinaryDiffEq = "7" PDESystemLibrary = "0.1" Plots = "1" RecursiveFactorization = "0.2" SciMLBenchmarks = "0.1" -Sundials = "5" +Sundials = "6" diff --git a/benchmarks/ModelingToolkit/Manifest.toml b/benchmarks/ModelingToolkit/Manifest.toml index 87cbd6199..45a8d8d9d 100644 --- a/benchmarks/ModelingToolkit/Manifest.toml +++ b/benchmarks/ModelingToolkit/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.12.4" +julia_version = "1.11.9" manifest_format = "2.0" -project_hash = "5a1e291d3dc5e28d096cef9030715dc7f27db6c1" +project_hash = "5e382d71d1a7e8497b007ef288180fa30fbb5267" [[deps.ADTypes]] -git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" +git-tree-sha1 = "bbc22a9a08a0ef6460041086d8a7b27940ed4ffd" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.21.0" +version = "1.22.0" weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] [deps.ADTypes.extensions] @@ -63,9 +63,9 @@ version = "0.1.44" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "35ea197a51ce46fcd01c4a44befce0578a1aaeca" +git-tree-sha1 = "0761717147821d696c9470a7a86364b2fbd22fd8" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.5.0" +version = "4.5.2" weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] @@ -101,9 +101,9 @@ version = "0.4.0" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "78b3a7a536b4b0a747a0f296ea77091ca0a9f9a3" +git-tree-sha1 = "54f895554d05c83e3dd59f6a396671dae8999573" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.23.0" +version = "7.24.0" [deps.ArrayInterface.extensions] ArrayInterfaceAMDGPUExt = "AMDGPU" @@ -191,10 +191,10 @@ uuid = "18cc8868-cbac-4acf-b575-c8ff214dc66f" version = "1.3.2" [[deps.BenchmarkTools]] -deps = ["Compat", "JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"] -git-tree-sha1 = "7fecfb1123b8d0232218e2da0c213004ff15358d" +deps = ["Compat", "JSON", "Logging", "PrecompileTools", "Printf", "Profile", "Statistics", "UUIDs"] +git-tree-sha1 = "9670d3febc2b6da60a0ae57846ba74670290653f" uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" -version = "1.6.3" +version = "1.8.0" [[deps.Bijections]] git-tree-sha1 = "a2d308fcd4c2fb90e943cf9cd2fbfa9c32b69733" @@ -211,12 +211,6 @@ weakdeps = ["SparseArrays"] [deps.BipartiteGraphs.extensions] BipartiteGraphsSparseArraysExt = "SparseArrays" -[[deps.BitTwiddlingConvenienceFunctions]] -deps = ["Static"] -git-tree-sha1 = "f21cfd4950cb9f0587d5067e69405ad2acd27b87" -uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" -version = "0.1.6" - [[deps.BlockArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] git-tree-sha1 = "0f606a9894e2bcda541ceb82a91a13c5d450ed97" @@ -230,9 +224,9 @@ weakdeps = ["Adapt", "BandedMatrices"] [[deps.BracketingNonlinearSolve]] deps = ["CommonSolve", "ConcreteStructs", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "4999dff8efd76814f6662519b985aeda975a1924" +git-tree-sha1 = "7ad7171d693ae5552ac43862e7f6b61df4471c2b" uuid = "70df07ce-3d50-431d-a3e7-ca6ddb60ac1e" -version = "1.11.0" +version = "1.12.1" weakdeps = ["ChainRulesCore", "ForwardDiff"] [deps.BracketingNonlinearSolve.extensions] @@ -250,12 +244,6 @@ git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" version = "0.5.0" -[[deps.CPUSummary]] -deps = ["CpuId", "IfElse", "PrecompileTools", "Preferences", "Static"] -git-tree-sha1 = "f3a21d7fc84ba618a779d1ed2fcca2e682865bab" -uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" -version = "0.2.7" - [[deps.CRC32c]] uuid = "8bf52ea8-c179-5cab-976a-9e18b702a9bc" version = "1.11.0" @@ -286,38 +274,38 @@ version = "1.1.1" [[deps.CairoMakie]] deps = ["CRC32c", "Cairo", "Cairo_jll", "Colors", "FileIO", "FreeType", "GeometryBasics", "LinearAlgebra", "Makie", "PrecompileTools"] -git-tree-sha1 = "fa072933899aae6dc61dde934febed8254e66c6a" +git-tree-sha1 = "bf2d9cd1ec0c4ce3e0b5aaad192074969413f626" uuid = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0" -version = "0.15.9" +version = "0.15.10" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d0efe2c6fdcdaa1c161d206aa8b933788397ec71" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.5+1" +version = "1.18.6+0" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" +git-tree-sha1 = "12177ad6b3cad7fd50c8b3825ce24a99ad61c18f" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.26.0" +version = "1.26.1" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] ChainRulesCoreSparseArraysExt = "SparseArrays" -[[deps.CloseOpenIntervals]] -deps = ["Static", "StaticArrayInterface"] -git-tree-sha1 = "05ba0d07cd4fd8b7a39541e31a7b0254704ea581" -uuid = "fb6a15b2-703c-40df-9091-08a04967cfa9" -version = "0.1.13" - [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" version = "0.7.8" +[[deps.CodecZstd]] +deps = ["TranscodingStreams", "Zstd_jll"] +git-tree-sha1 = "da54a6cd93c54950c15adf1d336cfd7d71f51a56" +uuid = "6b39b394-51ab-5f42-8807-6242bab2b4c2" +version = "0.8.7" + [[deps.ColorBrewer]] deps = ["Colors", "JSON"] git-tree-sha1 = "07da79661b919001e6863b81fc572497daa58349" @@ -390,7 +378,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.3.0+1" +version = "1.1.1+0" [[deps.CompositeTypes]] git-tree-sha1 = "bce26c3dab336582805503bed209faab1c279768" @@ -439,11 +427,17 @@ git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" version = "0.6.3" -[[deps.CpuId]] -deps = ["Markdown"] -git-tree-sha1 = "fcbb72b032692610bfbdb15018ac16a36cf2e406" -uuid = "adafc99b-e345-5852-983c-f28acb93d879" -version = "0.3.1" +[[deps.CoreMath]] +deps = ["CoreMath_jll"] +git-tree-sha1 = "8c0480f92b1b1796239156a1b9b1bfb1b39499b4" +uuid = "b7a15901-be09-4a0e-87d2-2e66b0e09b5a" +version = "0.1.0" + +[[deps.CoreMath_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a692a4c1dc59a4b8bc0b6403876eb3250fde2bc3" +uuid = "a38c48d9-6df1-5ac9-9223-b6ada3b5572b" +version = "0.1.0+0" [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" @@ -457,15 +451,15 @@ version = "1.16.0" [[deps.DataFrames]] deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "d8928e9169ff76c6281f39a659f9bca3a573f24c" +git-tree-sha1 = "5fab31e2e01e70ad66e3e24c968c264d1cf166d6" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.8.1" +version = "1.8.2" [[deps.DataStructures]] deps = ["OrderedCollections"] -git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" +git-tree-sha1 = "e86f4a2805f7f19bec5129bc9150c38208e5dc23" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.19.3" +version = "0.19.4" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -483,11 +477,17 @@ git-tree-sha1 = "c55f5a9fd67bdbc8e089b5a3111fe4292986a8e8" uuid = "927a84f5-c5f4-47a5-9785-b46e178433df" version = "1.6.6" +[[deps.Dictionaries]] +deps = ["Indexing", "Random", "Serialization"] +git-tree-sha1 = "a55766a9c8f66cf19ffcdbdb1444e249bb4ace33" +uuid = "85a47980-9c8c-11e8-2b9f-f7ca1fa99fb4" +version = "0.4.6" + [[deps.DiffEqBase]] -deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "96e0d3006aac4a322691de81f0baedd38b62a0c4" +deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "2d7ca58e6ce2d1f7a435773d73d111741e283070" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.211.0" +version = "7.1.0" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" @@ -528,9 +528,9 @@ version = "6.211.0" [[deps.DiffEqCallbacks]] deps = ["ConcreteStructs", "DataStructures", "DiffEqBase", "DifferentiationInterface", "LinearAlgebra", "Markdown", "PrecompileTools", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "f17b863c2d5d496363fe36c8d8535cc6a33c9952" +git-tree-sha1 = "51f445c25b80c26c83c61520cde214adf8c05227" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "4.12.0" +version = "4.17.0" [deps.DiffEqCallbacks.extensions] DiffEqCallbacksFunctorsExt = "Functors" @@ -552,9 +552,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +git-tree-sha1 = "d0250552e42bf7cc36479fd38a6e30004c9e8c2b" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.7.16" +version = "0.7.17" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -564,7 +564,7 @@ version = "0.7.16" DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] - DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGPUArraysCoreExt = ["GPUArraysCore", "Adapt"] DifferentiationInterfaceGTPSAExt = "GTPSA" DifferentiationInterfaceMooncakeExt = "Mooncake" DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] @@ -578,6 +578,7 @@ version = "0.7.16" DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] [deps.DifferentiationInterface.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" @@ -607,9 +608,9 @@ version = "1.11.0" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" +git-tree-sha1 = "e421c1938fafab0165b04dc1a9dbe2a26272952c" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.123" +version = "0.25.125" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -627,10 +628,10 @@ uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" version = "0.9.5" [[deps.DomainSets]] -deps = ["CompositeTypes", "IntervalSets", "LinearAlgebra", "StaticArrays"] -git-tree-sha1 = "c249d86e97a7e8398ce2068dce4c078a1c3464de" +deps = ["CompositeTypes", "FunctionMaps", "IntervalSets", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "4599e0cd684f3ff6cbbab73c77553a3d01a8d74d" uuid = "5b8099bc-c8ec-5219-889f-1d9e522a28bf" -version = "0.7.16" +version = "0.7.18" weakdeps = ["Makie", "Random"] [deps.DomainSets.extensions] @@ -640,13 +641,13 @@ weakdeps = ["Makie", "Random"] [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.7.0" +version = "1.6.0" [[deps.DynamicPolynomials]] -deps = ["Future", "LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Reexport", "Test"] -git-tree-sha1 = "3f50fa86c968fc1a9e006c07b6bc40ccbb1b704d" +deps = ["LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Reexport", "StarAlgebras", "Test"] +git-tree-sha1 = "5bfabc3827dfdd164359bad6800c115a81280c00" uuid = "7c1d4256-1411-5781-91ec-d7bc3513ac07" -version = "0.6.4" +version = "0.6.6" [[deps.EarCut_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -660,9 +661,9 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.7" [[deps.EnzymeCore]] -git-tree-sha1 = "990991b8aa76d17693a98e3a915ac7aa49f08d1a" +git-tree-sha1 = "c6ee69ee502060982d12dbaaf3d8fcb4e835a0d1" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.8.18" +version = "0.8.20" weakdeps = ["Adapt", "ChainRulesCore"] [deps.EnzymeCore.extensions] @@ -677,19 +678,9 @@ version = "2.2.9" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "27af30de8b5445644e8ffe3bcb0d72049c089cf1" +git-tree-sha1 = "8f05e9a2e7c2e3eb524102bb2926c5743c07fbe1" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.7.3+0" - -[[deps.ExponentialUtilities]] -deps = ["Adapt", "ArrayInterface", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "PrecompileTools", "Printf", "SparseArrays", "libblastrampoline_jll"] -git-tree-sha1 = "cc294ead6a85e975a8519dd4a0a6cb294eeb18d1" -uuid = "d4d017d3-3776-5f7e-afef-a10c40355c18" -version = "1.30.0" -weakdeps = ["StaticArrays"] - - [deps.ExponentialUtilities.extensions] - ExponentialUtilitiesStaticArraysExt = "StaticArrays" +version = "2.8.0+0" [[deps.ExprTools]] git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" @@ -708,9 +699,9 @@ version = "0.1.6" [[deps.FFMPEG_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libva_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "66381d7059b5f3f6162f28831854008040a4e905" +git-tree-sha1 = "cac41ca6b2d399adfc95e51240566f8a60a80806" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "8.0.1+1" +version = "8.1.0+0" [[deps.FFTA]] deps = ["AbstractFFTs", "DocStringExtensions", "LinearAlgebra", "MuladdMacro", "Primes", "Random", "Reexport"] @@ -719,22 +710,24 @@ uuid = "b86e33f2-c0db-4aa1-a6e0-ab43e668529e" version = "0.3.1" [[deps.FastBroadcast]] -deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "ab1b34570bcdf272899062e1a56285a53ecaae08" +deps = ["ArrayInterface", "LinearAlgebra"] +git-tree-sha1 = "7feeed2c9a7fa272189a5561bebf0c4ccaedb6ec" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.3.5" +version = "1.3.2" + + [deps.FastBroadcast.extensions] + FastBroadcastPolyesterExt = "Polyester" + FastBroadcastStaticExt = "Static" + + [deps.FastBroadcast.weakdeps] + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" + Static = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" version = "0.3.2" -[[deps.FastGaussQuadrature]] -deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "0044e9f5e49a57e88205e8f30ab73928b05fe5b6" -uuid = "442a2c76-b920-505d-bb47-c5924d526838" -version = "1.1.0" - [[deps.FastPower]] git-tree-sha1 = "862831f78c7a48681a074ecc9aac09f2de563f71" uuid = "a4df4552-cc26-4903-aec0-212e50a0e84b" @@ -760,9 +753,9 @@ version = "1.3.1" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "6522cfb3b8fe97bec632252263057996cbd3de20" +git-tree-sha1 = "8e9c059d6857607253e837730dbf780b6b151acd" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.18.0" +version = "1.19.0" [deps.FileIO.extensions] HTTPExt = "HTTP" @@ -822,9 +815,9 @@ version = "1.8.0" [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "9340ca07ca27093ff68418b7558ca37b05f8aeb1" +git-tree-sha1 = "f7017a4f337f8df189fcce98e32b67a1298a2115" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.29.0" +version = "2.31.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -889,16 +882,31 @@ git-tree-sha1 = "7a214fdac5ed5f59a22c2d9a885a16da1c74bbc7" uuid = "559328eb-81f9-559d-9380-de523a88c83c" version = "1.0.17+0" +[[deps.FunctionMaps]] +deps = ["CompositeTypes", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "31bd99a57edf98990d1c21486032963955450e8d" +uuid = "a85aefff-f8ca-4649-a888-c8e5398bc76c" +version = "0.1.2" + [[deps.FunctionWrappers]] git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" version = "1.1.3" [[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +deps = ["FunctionWrappers", "PrecompileTools", "TruncatedStacktraces"] +git-tree-sha1 = "c1b0c3a166a2a393257aa888787ca817532e14ce" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" +version = "1.8.0" + + [deps.FunctionWrappersWrappers.extensions] + FunctionWrappersWrappersEnzymeExt = ["Enzyme", "EnzymeCore"] + FunctionWrappersWrappersMooncakeExt = "Mooncake" + + [deps.FunctionWrappersWrappers.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" [[deps.Future]] deps = ["Random"] @@ -911,12 +919,6 @@ git-tree-sha1 = "83cf05ab16a73219e5f6bd1bdfa9848fa24ac627" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" version = "0.2.0" -[[deps.GenericSchur]] -deps = ["LinearAlgebra", "Printf"] -git-tree-sha1 = "a694e2a57394e409f7a11ee0977362a9fafcb8c7" -uuid = "c145ed77-6b09-5dd9-b285-bf645a82121e" -version = "0.5.6" - [[deps.GeometryBasics]] deps = ["EarCut_jll", "Extents", "IterTools", "LinearAlgebra", "PrecompileTools", "Random", "StaticArrays"] git-tree-sha1 = "1f5a80f4ed9f5a4aada88fc2db456e637676414b" @@ -955,9 +957,9 @@ version = "3.7.0+0" [[deps.Git_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "dc34a3e3d96b4ed305b641e626dc14c12b7824b8" +git-tree-sha1 = "0dd4cfb426924210c8f42742751cbde74b27bfa3" uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb" -version = "2.53.0+0" +version = "2.54.0+0" [[deps.Glib_jll]] deps = ["Artifacts", "GettextRuntime_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] @@ -1073,9 +1075,14 @@ version = "3.2.2+0" [[deps.ImplicitDiscreteSolve]] deps = ["ConcreteStructs", "DiffEqBase", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "OrdinaryDiffEqCore", "Reexport", "SciMLBase", "SymbolicIndexingInterface"] -git-tree-sha1 = "01eb732749884b8c481fc165c62c0b9652fd673a" +git-tree-sha1 = "dc9f649cbcdd4f2b402d7cbbd5cf61517b45ad5a" uuid = "3263718b-31ed-49cf-8a0f-35a466e8af96" -version = "1.9.0" +version = "2.0.0" + +[[deps.Indexing]] +git-tree-sha1 = "ce1566720fd6b19ff3411404d4b977acd4814f9f" +uuid = "313cdc1a-70c2-5d6a-ae34-0150d3930a38" +version = "1.1.1" [[deps.IndirectArrays]] git-tree-sha1 = "012e604e1c7458645cb8b436f8fba789a51b257f" @@ -1128,16 +1135,17 @@ weakdeps = ["ForwardDiff", "Unitful"] InterpolationsUnitfulExt = "Unitful" [[deps.IntervalArithmetic]] -deps = ["CRlibm", "MacroTools", "OpenBLASConsistentFPCSR_jll", "Printf", "Random", "RoundingEmulator"] -git-tree-sha1 = "2cce1fed119ca7b6cc230c4a3b85202478af7924" +deps = ["CRlibm", "CoreMath", "MacroTools", "OpenBLASConsistentFPCSR_jll", "Printf", "Random", "RoundingEmulator"] +git-tree-sha1 = "3e6273749a2df3a5c9067657510ad01ba5039a92" uuid = "d1acc4aa-44c8-5952-acd4-ba5d80a2a253" -version = "1.0.3" +version = "1.0.8" [deps.IntervalArithmetic.extensions] IntervalArithmeticArblibExt = "Arblib" IntervalArithmeticDiffRulesExt = "DiffRules" IntervalArithmeticForwardDiffExt = "ForwardDiff" IntervalArithmeticIntervalSetsExt = "IntervalSets" + IntervalArithmeticIrrationalConstantsExt = "IrrationalConstants" IntervalArithmeticLinearAlgebraExt = "LinearAlgebra" IntervalArithmeticRecipesBaseExt = "RecipesBase" IntervalArithmeticSparseArraysExt = "SparseArrays" @@ -1147,14 +1155,15 @@ version = "1.0.3" DiffRules = "b552c78f-8df3-52c6-915a-8e097449b14b" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + IrrationalConstants = "92d709cd-6900-40b7-9082-c6be49f344b6" LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[deps.IntervalSets]] -git-tree-sha1 = "d966f85b3b7a8e49d034d27a189e9a4874b4391a" +git-tree-sha1 = "79d6bd28c8d9bccc2229784f1bd637689b256377" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.13" +version = "0.7.14" weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] @@ -1224,20 +1233,15 @@ version = "0.1.6" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "b6893345fd6658c8e475d40155789f4860ac3b21" +git-tree-sha1 = "c0c9b76f3520863909825cbecdef58cd63de705a" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.1.4+0" - -[[deps.JuliaSyntaxHighlighting]] -deps = ["StyledStrings"] -uuid = "ac6e5ff7-fb65-4e79-a425-ec3bc9c03011" -version = "1.12.0" +version = "3.1.5+0" [[deps.JumpProcesses]] deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "PoissonRandom", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "SymbolicIndexingInterface"] -git-tree-sha1 = "1d9e36e530080a9f097de67c2576c3f83d418dd0" +git-tree-sha1 = "2a8e5b9b90ef0da05f61904d0a39a7b1c0a83310" uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" -version = "9.23.2" +version = "9.28.0" [deps.JumpProcesses.extensions] JumpProcessesKernelAbstractionsExt = ["Adapt", "KernelAbstractions"] @@ -1245,7 +1249,6 @@ version = "9.23.2" [deps.JumpProcesses.weakdeps] Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" - FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" OrdinaryDiffEqCore = "bbf590c4-e513-4bbe-9b18-05decba2e5d8" @@ -1269,9 +1272,9 @@ version = "3.100.3+0" [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "aaafe88dccbd957a8d82f7d05be9b69172e0cee3" +git-tree-sha1 = "17b94ecafcfa45e8360a4fc9ca6b583b049e4e37" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "4.0.1+0" +version = "4.1.0+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1279,23 +1282,11 @@ git-tree-sha1 = "eb62a3deb62fc6d8822c0c4bef73e4412419c5d8" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" version = "18.1.8+0" -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "1c602b1127f4751facb671441ca72715cc95938a" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.3+0" - [[deps.LaTeXStrings]] git-tree-sha1 = "dda21b8cbd6a6c40d9d02a73230f9d70fed6918c" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" version = "1.4.0" -[[deps.LayoutPointers]] -deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "a9eaadb366f5493a5654e843864c13d8b107548c" -uuid = "10f19ff3-798f-405d-979b-55457f8fc047" -version = "0.1.17" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -1312,24 +1303,24 @@ uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" version = "0.6.4" [[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "OpenSSL_jll", "Zlib_jll", "nghttp2_jll"] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.15.0+0" +version = "8.6.0+0" [[deps.LibGit2]] -deps = ["LibGit2_jll", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" version = "1.11.0" [[deps.LibGit2_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "OpenSSL_jll"] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.9.0+0" +version = "1.7.2+0" [[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "OpenSSL_jll"] +deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.11.3+1" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -1355,9 +1346,9 @@ version = "1.18.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "97bbca976196f2a1eb9607131cb108c69ec3f8a6" +git-tree-sha1 = "cc3ad4faf30015a3e8094c9b5b7f19e85bdf2386" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] @@ -1367,9 +1358,9 @@ version = "4.7.2+0" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d0205286d9eceadc518742860bf23f703779a3d6" +git-tree-sha1 = "d620582b1f0cbe2c72dd1d5bd195a9ce73370ab1" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.LightXML]] deps = ["Libdl", "XML2_jll"] @@ -1379,30 +1370,26 @@ version = "0.9.3" [[deps.LineSearch]] deps = ["ADTypes", "CommonSolve", "ConcreteStructs", "FastClosures", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "SciMLBase", "SciMLJacobianOperators", "StaticArraysCore"] -git-tree-sha1 = "9f7253c0574b4b585c8909232adb890930da980a" +git-tree-sha1 = "fd58a77c92e7c8f1db25c9839127d52943a49349" uuid = "87fe0de2-c867-4266-b59a-2f0a94fc965b" -version = "0.1.6" -weakdeps = ["LineSearches"] +version = "0.1.9" [deps.LineSearch.extensions] LineSearchLineSearchesExt = "LineSearches" -[[deps.LineSearches]] -deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Printf"] -git-tree-sha1 = "738bdcacfef25b3a9e4a39c28613717a6b23751e" -uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.6.0" + [deps.LineSearch.weakdeps] + LineSearches = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" -version = "1.12.0" +version = "1.11.0" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "adbd4c44ef9361c67dd5dc192b66ac12b9e1be85" +deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] +git-tree-sha1 = "42b5cb44317e89ef75dd841c9c8eba9045bf9ff0" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "3.68.0" +version = "3.75.0" [deps.LinearSolve.extensions] LinearSolveAMDGPUExt = "AMDGPU" @@ -1413,7 +1400,9 @@ version = "3.68.0" LinearSolveCUDAExt = "CUDA" LinearSolveCUDSSExt = "CUDSS" LinearSolveCUSOLVERRFExt = ["CUSOLVERRF", "SparseArrays"] + LinearSolveChainRulesCoreExt = "ChainRulesCore" LinearSolveCliqueTreesExt = ["CliqueTrees", "SparseArrays"] + LinearSolveElementalExt = "Elemental" LinearSolveEnzymeExt = ["EnzymeCore", "SparseArrays"] LinearSolveFastAlmostBandedMatricesExt = "FastAlmostBandedMatrices" LinearSolveFastLapackInterfaceExt = "FastLapackInterface" @@ -1425,7 +1414,9 @@ version = "3.68.0" LinearSolveKrylovKitExt = "KrylovKit" LinearSolveMetalExt = "Metal" LinearSolveMooncakeExt = "Mooncake" + LinearSolvePETScCSRExt = ["PETSc", "SparseArrays", "SparseMatricesCSR"] LinearSolvePETScExt = ["PETSc", "SparseArrays"] + LinearSolvePETScMPIExt = ["PETSc", "PartitionedArrays", "SparseArrays", "SparseMatricesCSR"] LinearSolveParUExt = ["ParU_jll", "SparseArrays"] LinearSolvePardisoExt = ["Pardiso", "SparseArrays"] LinearSolveRecursiveFactorizationExt = "RecursiveFactorization" @@ -1440,7 +1431,9 @@ version = "3.68.0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" CUSOLVERRF = "a8cc9031-bad2-4722-94f5-40deabb4245c" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" + Elemental = "902c3f28-d1ec-5e7e-8399-a24c3845ee38" EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" FastLapackInterface = "29a986be-02c6-4525-aec4-84b980013641" @@ -1456,8 +1449,10 @@ version = "3.68.0" PETSc = "ace2c81b-2b5f-4b1e-a30d-d662738edfe0" ParU_jll = "9e0b026c-e8ce-559c-a2c4-6a3d5c955bc9" Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" + PartitionedArrays = "5a9dfac6-5c52-46f7-8278-5e2210713be9" RecursiveFactorization = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseMatricesCSR = "a0a7dd2c-ebf4-11e9-1f05-cf50bc540ca1" Sparspak = "e56a9233-b9d6-4f03-8d0f-1825330902ac" blis_jll = "6136c539-28a5-5bf0-87cc-b183200dce32" @@ -1500,9 +1495,9 @@ version = "0.5.16" [[deps.Makie]] deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "ComputePipeline", "Contour", "Dates", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FilePaths", "FixedPointNumbers", "Format", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageBase", "ImageIO", "InteractiveUtils", "Interpolations", "IntervalSets", "InverseFunctions", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "Markdown", "MathTeXEngine", "Observables", "OffsetArrays", "PNGFiles", "Packing", "Pkg", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Scratch", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun", "Unitful"] -git-tree-sha1 = "68af66ec16af8b152309310251ecb4fbfe39869f" +git-tree-sha1 = "0708c6a1f3cb18ba6482c4174058084c8d6deaf4" uuid = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" -version = "0.24.9" +version = "0.24.10" [deps.Makie.extensions] MakieDynamicQuantitiesExt = "DynamicQuantities" @@ -1510,18 +1505,13 @@ version = "0.24.9" [deps.Makie.weakdeps] DynamicQuantities = "06fc5a27-2a28-4c7c-a15d-362465fb6821" -[[deps.ManualMemory]] -git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" -uuid = "d125e4d3-2237-4719-b19c-fa641b8a4667" -version = "0.1.8" - [[deps.MappedArrays]] git-tree-sha1 = "0ee4497a4e80dbd29c058fcee6493f5219556f40" uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" version = "0.4.3" [[deps.Markdown]] -deps = ["Base64", "JuliaSyntaxHighlighting", "StyledStrings"] +deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" version = "1.11.0" @@ -1541,6 +1531,11 @@ weakdeps = ["SparseArrays"] [deps.MaybeInplace.extensions] MaybeInplaceSparseArraysExt = "SparseArrays" +[[deps.MbedTLS_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" +version = "2.28.6+0" + [[deps.Missings]] deps = ["DataAPI"] git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" @@ -1552,10 +1547,10 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" version = "1.11.0" [[deps.ModelingToolkit]] -deps = ["ADTypes", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "ConstructionBase", "DataStructures", "DiffEqBase", "DifferentiationInterface", "DocStringExtensions", "FillArrays", "FindFirstFunctions", "ForwardDiff", "Graphs", "InteractiveUtils", "Libdl", "LinearAlgebra", "ModelingToolkitBase", "ModelingToolkitTearing", "Moshi", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "StateSelection", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] -git-tree-sha1 = "8a8425f770317bd9a14200bf57f2462c6ce846d3" +deps = ["ADTypes", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "ConstructionBase", "DataStructures", "DiffEqBase", "DifferentiationInterface", "DocStringExtensions", "FillArrays", "ForwardDiff", "Graphs", "InteractiveUtils", "Libdl", "LinearAlgebra", "ModelingToolkitBase", "ModelingToolkitTearing", "Moshi", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "StateSelection", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] +git-tree-sha1 = "8527fee82ed8dc6934827b447b0555674c3ba1be" uuid = "961ee093-0014-501f-94e3-6117800e7a78" -version = "11.17.0" +version = "11.24.1" [deps.ModelingToolkit.extensions] MTKFMIExt = "FMIImport" @@ -1570,10 +1565,10 @@ version = "11.17.0" OrdinaryDiffEqRosenbrock = "43230ef6-c299-4910-a778-202eb28ce4ce" [[deps.ModelingToolkitBase]] -deps = ["ADTypes", "AbstractTrees", "ArrayInterface", "BandedMatrices", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffRules", "DifferentiationInterface", "DocStringExtensions", "DomainSets", "EnumX", "EnzymeCore", "ExprTools", "FillArrays", "FindFirstFunctions", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "ImplicitDiscreteSolve", "InteractiveUtils", "JumpProcesses", "Libdl", "LinearAlgebra", "Moshi", "NaNMath", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Random", "ReadOnlyDicts", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] -git-tree-sha1 = "0967487a5375f4b51ddc503d7a19f325094d212e" +deps = ["ADTypes", "AbstractTrees", "ArrayInterface", "BandedMatrices", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffRules", "DifferentiationInterface", "DocStringExtensions", "DomainSets", "EnumX", "EnzymeCore", "ExprTools", "FillArrays", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "ImplicitDiscreteSolve", "InteractiveUtils", "JumpProcesses", "Libdl", "LinearAlgebra", "Moshi", "NaNMath", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Random", "ReadOnlyDicts", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] +git-tree-sha1 = "d52da5508ed6c42b4e7c01356287d7114f3e13db" uuid = "7771a370-6774-4173-bd38-47e70ca0b839" -version = "1.24.0" +version = "1.33.1" [deps.ModelingToolkitBase.extensions] MTKBifurcationKitExt = "BifurcationKit" @@ -1603,15 +1598,15 @@ version = "1.24.0" [[deps.ModelingToolkitStandardLibrary]] deps = ["ChainRulesCore", "DiffEqBase", "IfElse", "LinearAlgebra", "ModelingToolkitBase", "PreallocationTools", "Symbolics"] -git-tree-sha1 = "f81e19513ea8f29ac7edaebad5071f57c6aef394" +git-tree-sha1 = "5470d211f8b756c9dd62dacf35e53f231db74567" uuid = "16a59e39-deab-5bd0-87e4-056b12336739" -version = "2.27.0" +version = "2.28.0" [[deps.ModelingToolkitTearing]] deps = ["BipartiteGraphs", "CommonSolve", "DocStringExtensions", "Graphs", "LinearAlgebra", "ModelingToolkitBase", "Moshi", "OffsetArrays", "OrderedCollections", "SciMLBase", "Setfield", "SparseArrays", "StateSelection", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UUIDs"] -git-tree-sha1 = "7f10f991a1c8d392872163cea3344260932a906c" +git-tree-sha1 = "3ad8028ba31ef212307586416f1b341b5e8d4eb9" uuid = "6bb917b9-1269-42b9-9f7c-b0dca72083ab" -version = "1.10.2" +version = "1.13.3" [[deps.MosaicViews]] deps = ["MappedArrays", "OffsetArrays", "PaddedViews", "StackViews"] @@ -1627,7 +1622,7 @@ version = "0.3.7" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2025.11.4" +version = "2023.12.12" [[deps.MuladdMacro]] git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" @@ -1635,10 +1630,10 @@ uuid = "46d2c3a1-f734-5fdb-9937-b9b9aeba4221" version = "0.2.4" [[deps.MultivariatePolynomials]] -deps = ["DataStructures", "LinearAlgebra", "MutableArithmetics"] -git-tree-sha1 = "139071bb741eeaa3ee7d4109f1299e9282882d79" +deps = ["DataStructures", "LinearAlgebra", "MutableArithmetics", "StarAlgebras"] +git-tree-sha1 = "4838893d9b035c2f6967c0d533350e1755b58a70" uuid = "102ac46a-7ee4-5c85-9060-abc95bfdeaa3" -version = "0.5.14" +version = "0.5.19" weakdeps = ["ChainRulesCore"] [deps.MultivariatePolynomials.extensions] @@ -1652,15 +1647,9 @@ version = "1.0.21" [[deps.MutableArithmetics]] deps = ["LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "22df8573f8e7c593ac205455ca088989d0a2c7a0" +git-tree-sha1 = "7c25249fc13a070f5ba433c50e21e22bb33c6fb0" uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" -version = "1.6.7" - -[[deps.NLSolversBase]] -deps = ["ADTypes", "DifferentiationInterface", "FiniteDiff", "LinearAlgebra"] -git-tree-sha1 = "b3f76b463c7998473062992b246045e6961a074e" -uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" -version = "8.0.0" +version = "1.7.1" [[deps.NaNMath]] deps = ["OpenLibm_jll"] @@ -1676,13 +1665,13 @@ version = "1.1.1" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.3.0" +version = "1.2.0" [[deps.NonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SciMLLogging", "SimpleNonlinearSolve", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "d27bcf0cebf8786edcc2eaa4455c959e680334e7" +deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SciMLLogging", "Setfield", "SimpleNonlinearSolve", "StaticArraysCore", "SymbolicIndexingInterface"] +git-tree-sha1 = "ae0b0f875e4dfda538ab6977ec7939126ee9a1fe" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "4.16.0" +version = "4.19.0" [deps.NonlinearSolve.extensions] NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" @@ -1712,10 +1701,10 @@ version = "4.16.0" Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" [[deps.NonlinearSolveBase]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "LinearAlgebra", "LogExpFunctions", "Markdown", "MaybeInplace", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "28ddfd7d136564c5b2a09d28759feccc2005dbea" +deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "LogExpFunctions", "Markdown", "MaybeInplace", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] +git-tree-sha1 = "a19a5df29ef2b197499fc631fa1a59385ae15262" uuid = "be0214bd-f91f-a760-ac4e-3421ce2b2da0" -version = "2.16.0" +version = "2.25.0" [deps.NonlinearSolveBase.extensions] NonlinearSolveBaseBandedMatricesExt = "BandedMatrices" @@ -1745,15 +1734,15 @@ version = "2.16.0" [[deps.NonlinearSolveFirstOrder]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConcreteStructs", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLJacobianOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "eea7cbe389b168c77df7ff779fb7277019c685c8" +git-tree-sha1 = "ce68820a4f421fb5bee7ec4dcf875aff33886bfb" uuid = "5959db7a-ea39-4486-b5fe-2dd0bf03d60d" -version = "2.0.0" +version = "2.1.1" [[deps.NonlinearSolveQuasiNewton]] deps = ["ArrayInterface", "CommonSolve", "ConcreteStructs", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLOperators", "StaticArraysCore"] -git-tree-sha1 = "ade27e8e9566b6cec63ee62f6a6650a11cf9a2eb" +git-tree-sha1 = "538432ca1aea8bf63db02929bf870501f8a7c64c" uuid = "9a2c21bd-3a47-402d-9113-8faf9a0ee114" -version = "1.12.0" +version = "1.13.1" weakdeps = ["ForwardDiff"] [deps.NonlinearSolveQuasiNewton.extensions] @@ -1761,9 +1750,9 @@ weakdeps = ["ForwardDiff"] [[deps.NonlinearSolveSpectralMethods]] deps = ["CommonSolve", "ConcreteStructs", "LineSearch", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "eafd027b5cd768f19bb5de76c0e908a9065ddd36" +git-tree-sha1 = "a3781e12becdf0ce5520bd97ec617e879bf4e9f2" uuid = "26075421-4e9a-44e1-8bd1-420ed7ad02b2" -version = "1.6.0" +version = "1.7.1" weakdeps = ["ForwardDiff"] [deps.NonlinearSolveSpectralMethods.extensions] @@ -1797,14 +1786,14 @@ version = "1.3.6+0" [[deps.OpenBLASConsistentFPCSR_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f2b3b9e52a5eb6a3434c8cca67ad2dde011194f4" +git-tree-sha1 = "3287ec88df50429a934ebc6cf14606215e27b987" uuid = "6cdc7f73-28fd-5e50-80fb-958a8875b1af" -version = "0.3.30+0" +version = "0.3.33+0" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.29+0" +version = "0.3.27+1" [[deps.OpenEXR]] deps = ["Colors", "FileIO", "OpenEXR_jll"] @@ -1814,25 +1803,26 @@ version = "0.3.3" [[deps.OpenEXR_jll]] deps = ["Artifacts", "Imath_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "df9b7c88c2e7a2e77146223c526bf9e236d5f450" +git-tree-sha1 = 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= "1.8.1" [[deps.OrdinaryDiffEq]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FillArrays", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "MacroTools", "MuladdMacro", "NonlinearSolve", "OrdinaryDiffEqAdamsBashforthMoulton", "OrdinaryDiffEqBDF", "OrdinaryDiffEqCore", "OrdinaryDiffEqDefault", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqExplicitRK", "OrdinaryDiffEqExponentialRK", "OrdinaryDiffEqExtrapolation", "OrdinaryDiffEqFIRK", "OrdinaryDiffEqFeagin", "OrdinaryDiffEqFunctionMap", "OrdinaryDiffEqHighOrderRK", "OrdinaryDiffEqIMEXMultistep", "OrdinaryDiffEqLinear", "OrdinaryDiffEqLowOrderRK", "OrdinaryDiffEqLowStorageRK", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqNordsieck", "OrdinaryDiffEqPDIRK", "OrdinaryDiffEqPRK", "OrdinaryDiffEqQPRK", 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"Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "2a193931b5dc2400f7f4fb7593b23e0aca96a581" uuid = "6ad6398a-0878-4a85-9266-38940aa047c8" -version = "1.23.0" +version = "2.0.0" [[deps.OrdinaryDiffEqCore]] -deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ConcreteStructs", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FillArrays", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "Polyester", "PrecompileTools", "Preferences", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Static", "StaticArrayInterface", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "a045f288671d99e23efc4ea32564cedd0fc7373d" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ConcreteStructs", "DataStructures", "DiffEqBase", 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"PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static"] -git-tree-sha1 = "a70c74cbc0d7f83329359d9a229bc798ee768aa0" +deps = ["ADTypes", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqRosenbrockTableaus", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase"] +git-tree-sha1 = "803334224154e4a2a9d984547dd4449d3ca71c63" uuid = "43230ef6-c299-4910-a778-202eb28ce4ce" -version = "1.26.0" +version = "2.0.0" + +[[deps.OrdinaryDiffEqRosenbrockTableaus]] +git-tree-sha1 = "66acd57301ea9c79ff92b13b72135af258c141ab" +uuid = "b4bd8bb3-f80f-41d2-9b21-73a655b304b9" +version = "2.0.0" [[deps.OrdinaryDiffEqSDIRK]] deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] -git-tree-sha1 = "ccc883881d5c74e08b28b299bb135c38d3496381" +git-tree-sha1 = "8df990b85ea063a20df3f1b1dddab9d0afec985c" uuid = "2d112036-d095-4a1e-ab9a-08536f3ecdbf" -version = "1.13.0" - -[[deps.OrdinaryDiffEqSSPRK]] -deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static", "StaticArrays"] -git-tree-sha1 = "5cad7fb244bf163df45deff09be5be9f05b32d29" -uuid = "669c94d9-1f4b-4b64-b377-1aa079aa2388" -version = "1.12.0" - -[[deps.OrdinaryDiffEqStabilizedIRK]] -deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqStabilizedRK", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays"] -git-tree-sha1 = 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"6e6173f4d0db8b8136d5fccdcdb7e8abe800a352" +deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "d9cedcfa2cdae8859b4510b9d01ada9852cd6d9d" uuid = "b1df2697-797e-41e3-8120-5422d3b24e4a" -version = "1.10.0" +version = "2.0.0" [[deps.OrdinaryDiffEqVerner]] -deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static", "TruncatedStacktraces"] -git-tree-sha1 = "3bcd3987d1c54d22bcccc1dfdb60b7481746c122" +deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "fb8ae6a290beed2ef61fa2e7571d921e1100c365" uuid = "79d7bb75-1356-48c1-b8c0-6832512096c2" -version = "1.12.0" +version = "2.0.0" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.44.0+1" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] @@ -2084,15 +1953,15 @@ version = "0.5.12" [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "0662b083e11420952f2e62e17eddae7fc07d5997" +git-tree-sha1 = "58e5ed5e386e156bd93e86b305ebd21ac63d2d04" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" -version = "1.57.0+0" +version = "1.57.1+0" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "7d2f8f21da5db6a806faf7b9b292296da42b2810" +git-tree-sha1 = "5d5e0a78e971354b1c7bff0655d11fdc1b0e12c8" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.3" +version = "2.8.4" [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] @@ -2103,7 +1972,7 @@ version = "0.44.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.12.1" +version = "1.11.0" weakdeps = ["REPL"] [deps.Pkg.extensions] @@ -2127,18 +1996,6 @@ git-tree-sha1 = "67afbcbe9e184d6729a92a022147ed4cf972ca7b" uuid = "e409e4f3-bfea-5376-8464-e040bb5c01ab" version = "0.4.7" -[[deps.Polyester]] -deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "16bbc30b5ebea91e9ce1671adc03de2832cff552" -uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.19" - -[[deps.PolyesterWeave]] -deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] -git-tree-sha1 = "645bed98cd47f72f67316fd42fc47dee771aefcd" -uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad" -version = "0.2.2" - [[deps.PolygonOps]] git-tree-sha1 = "77b3d3605fc1cd0b42d95eba87dfcd2bf67d5ff6" uuid = "647866c9-e3ac-4575-94e7-e3d426903924" @@ -2188,9 +2045,9 @@ version = "1.2.0" [[deps.PrecompileTools]] deps = ["Preferences"] -git-tree-sha1 = "07a921781cab75691315adc645096ed5e370cb77" +git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.3.3" +version = "1.2.1" [[deps.Preferences]] deps = ["TOML"] @@ -2222,7 +2079,6 @@ uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" version = "1.11.0" [[deps.Profile]] -deps = ["StyledStrings"] uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79" version = "1.11.0" @@ -2245,9 +2101,9 @@ version = "1.0.2" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9da16da70037ba9d701192e27befedefb91ec284" +git-tree-sha1 = "5e8e8b0ab68215d7a2b14b9921a946fee794749e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.11.2" +version = "2.11.3" [deps.QuadGK.extensions] QuadGKEnzymeExt = "Enzyme" @@ -2256,7 +2112,7 @@ version = "2.11.2" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" [[deps.REPL]] -deps = ["InteractiveUtils", "JuliaSyntaxHighlighting", "Markdown", "Sockets", "StyledStrings", "Unicode"] +deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" version = "1.11.0" @@ -2299,16 +2155,19 @@ version = "1.3.4" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "LinearAlgebra", "PrecompileTools", "RecipesBase", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "18d2a6fd1ea9a8205cadb3a5704f8e51abdd748b" +git-tree-sha1 = "57b6fb3932fc8d1fc911f840d2c9de5fe3ba5008" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.48.0" +version = "4.3.0" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsCUDAExt = "CUDA" RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsFastBroadcastPolyesterExt = ["FastBroadcast", "Polyester"] RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsKernelAbstractionsExt = "KernelAbstractions" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsMooncakeExt = "Mooncake" RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] RecursiveArrayToolsStatisticsExt = "Statistics" @@ -2318,11 +2177,14 @@ version = "3.48.0" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" @@ -2367,15 +2229,15 @@ version = "0.2.1" [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "7257165d5477fd1025f7cb656019dcb6b0512c38" +git-tree-sha1 = "cfcdc949c4660544ab0fdeed169561cb22f835f4" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.17" +version = "0.5.18" [[deps.SCCNonlinearSolve]] deps = ["CommonSolve", "PrecompileTools", "Reexport", "SciMLBase", "SymbolicIndexingInterface"] -git-tree-sha1 = "b1fed39f2acdd4524c17b50ce6f4406be61b936d" +git-tree-sha1 = "521a298294a6fd11068df0148b4d57bb31550453" uuid = "9dfe8606-65a1-4bb3-9748-cb89d1561431" -version = "1.11.0" +version = "1.13.0" weakdeps = ["ChainRulesCore"] [deps.SCCNonlinearSolve.extensions] @@ -2391,16 +2253,11 @@ git-tree-sha1 = "e24dc23107d426a096d3eae6c165b921e74c18e4" uuid = "fdea26ae-647d-5447-a871-4b548cad5224" version = "3.7.2" -[[deps.SIMDTypes]] -git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" -uuid = "94e857df-77ce-4151-89e5-788b33177be4" -version = "0.1.0" - [[deps.SciMLBase]] -deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Moshi", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "6e8c1bb72b768923d409edface0b3dcf61180d8d" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "Random", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] +git-tree-sha1 = "450a8405f96d0a7c6caabed0852def06ba8c6bf1" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.152.1" +version = "3.7.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2408,7 +2265,6 @@ version = "2.152.1" SciMLBaseDistributionsExt = "Distributions" SciMLBaseEnzymeExt = "Enzyme" SciMLBaseForwardDiffExt = "ForwardDiff" - SciMLBaseMLStyleExt = "MLStyle" SciMLBaseMakieExt = "Makie" SciMLBaseMeasurementsExt = "Measurements" SciMLBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" @@ -2428,7 +2284,6 @@ version = "2.152.1" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - MLStyle = "d8e11817-5142-5d16-987a-aa16d5891078" Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" @@ -2449,9 +2304,9 @@ version = "0.1.3" [[deps.SciMLJacobianOperators]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DifferentiationInterface", "FastClosures", "LinearAlgebra", "SciMLBase", "SciMLOperators"] -git-tree-sha1 = "e96d5e96debf7f80a50d0b976a13dea556ccfd3a" +git-tree-sha1 = "7156a5b51cba1bea33a82a036939ead4131f92bc" uuid = "19f34311-ddf3-4b8b-af20-060888a46c0e" -version = "0.1.12" +version = "0.1.13" [[deps.SciMLLogging]] deps = ["Logging", "LoggingExtras", "Preferences"] @@ -2467,9 +2322,9 @@ version = "1.9.1" [[deps.SciMLOperators]] deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra"] -git-tree-sha1 = "794c760e6aafe9f40dcd7dd30526ea33f0adc8b7" +git-tree-sha1 = "0e34162268883db01c04f988895a80d0659071bb" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "1.15.1" +version = "1.17.0" weakdeps = ["SparseArrays", "StaticArraysCore"] [deps.SciMLOperators.extensions] @@ -2534,9 +2389,9 @@ version = "0.4.1" [[deps.SimpleNonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "744c3f0fb186ad28376199c1e72ca39d0c614b5d" +git-tree-sha1 = "d688de789b7e643326caf9a1051376dadbcd8873" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "2.11.0" +version = "2.11.1" [deps.SimpleNonlinearSolve.extensions] SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" @@ -2573,32 +2428,35 @@ version = "1.2.2" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -version = "1.12.0" +version = "1.11.0" [[deps.SparseMatrixColorings]] deps = ["ADTypes", "DocStringExtensions", "LinearAlgebra", "PrecompileTools", "Random", "SparseArrays"] -git-tree-sha1 = "1c1be8c6fdfaf9b6c9e156c509e672953b8e6af7" +git-tree-sha1 = "f63d76c7b7c329cf11badd564fd8ba877b09c3fe" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.4.26" +version = "0.4.27" [deps.SparseMatrixColorings.extensions] - SparseMatrixColoringsCUDAExt = "CUDA" + SparseMatrixColoringsCUDAExt = ["CUDA", "cuSPARSE"] SparseMatrixColoringsCliqueTreesExt = "CliqueTrees" SparseMatrixColoringsColorsExt = "Colors" + SparseMatrixColoringsGPUArraysExt = "GPUArrays" SparseMatrixColoringsJuMPExt = ["JuMP", "MathOptInterface"] [deps.SparseMatrixColorings.weakdeps] CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" + GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" JuMP = "4076af6c-e467-56ae-b986-b466b2749572" MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" + cuSPARSE = "b26da814-b3bc-49ef-b0ee-c816305aa060" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "5acc6a41b3082920f79ca3c759acbcecf18a8d78" +git-tree-sha1 = "2700b235561b0335d5bef7097a111dc513b8655e" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.7.1" +version = "2.7.2" weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] @@ -2616,11 +2474,17 @@ git-tree-sha1 = "be1cf4eb0ac528d96f5115b4ed80c26a8d8ae621" uuid = "cae243ae-269e-4f55-b966-ac2d0dc13c15" version = "0.1.2" +[[deps.StarAlgebras]] +deps = ["LinearAlgebra", "MutableArithmetics", "SparseArrays"] +git-tree-sha1 = "235b1f9d287bbf34083b3d0829343a7942c0ad1c" +uuid = "0c0c59c1-dc5f-42e9-9a8b-b5dc384a6cd1" +version = "0.3.0" + [[deps.StateSelection]] deps = ["BipartiteGraphs", "DocStringExtensions", "FindFirstFunctions", "Graphs", "LinearAlgebra", "OrderedCollections", "Setfield", "SparseArrays"] -git-tree-sha1 = "9549b7513b982eef19b79b3877e2a853ae89475f" +git-tree-sha1 = "824641f6d414f0885200e034e3853c3c2f61ac43" uuid = "64909d44-ed92-46a8-bbd9-f047dfbdc84b" -version = "1.6.0" +version = "1.9.2" [deps.StateSelection.extensions] StateSelectionDeepDiffsExt = "DeepDiffs" @@ -2628,23 +2492,6 @@ version = "1.6.0" [deps.StateSelection.weakdeps] DeepDiffs = "ab62b9b5-e342-54a8-a765-a90f495de1a6" -[[deps.Static]] -deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools", "SciMLPublic"] -git-tree-sha1 = "49440414711eddc7227724ae6e570c7d5559a086" -uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.3.1" - -[[deps.StaticArrayInterface]] -deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "SciMLPublic", "Static"] -git-tree-sha1 = "aa1ea41b3d45ac449d10477f65e2b40e3197a0d2" -uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.9.0" -weakdeps = ["OffsetArrays", "StaticArrays"] - - [deps.StaticArrayInterface.extensions] - StaticArrayInterfaceOffsetArraysExt = "OffsetArrays" - StaticArrayInterfaceStaticArraysExt = "StaticArrays" - [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] git-tree-sha1 = "246a8bb2e6667f832eea063c3a56aef96429a3db" @@ -2694,12 +2541,6 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] StatsFunsChainRulesCoreExt = "ChainRulesCore" StatsFunsInverseFunctionsExt = "InverseFunctions" -[[deps.StrideArraysCore]] -deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "83151ba8065a73f53ca2ae98bc7274d817aa30f2" -uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.5.8" - [[deps.StringEncodings]] deps = ["Libiconv_jll"] git-tree-sha1 = "b765e46ba27ecf6b44faf70df40c57aa3a547dcb" @@ -2714,9 +2555,9 @@ version = "0.4.4" [[deps.StructArrays]] deps = ["ConstructionBase", "DataAPI", "Tables"] -git-tree-sha1 = "a2c37d815bf00575332b7bd0389f771cb7987214" +git-tree-sha1 = "ad8002667372439f2e3611cfd14097e03fa4bccd" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.7.2" +version = "0.7.3" [deps.StructArrays.extensions] StructArraysAdaptExt = "Adapt" @@ -2744,7 +2585,7 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "7.8.3+2" +version = "7.7.0+0" [[deps.SymbolicIndexingInterface]] deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] @@ -2763,10 +2604,10 @@ uuid = "19f23fe9-fdab-4a78-91af-e7b7767979c3" version = "1.1.0" [[deps.SymbolicUtils]] -deps = ["AbstractTrees", "ArrayInterface", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "EnumX", "ExproniconLite", "LinearAlgebra", "MacroTools", "Moshi", "MultivariatePolynomials", "MutableArithmetics", "NaNMath", "PrecompileTools", "ReadOnlyArrays", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "TaskLocalValues", "TermInterface", "WeakCacheSets"] -git-tree-sha1 = "0ed9311359e871309a5af77eb614836bd8097259" +deps = ["AbstractTrees", "ArrayInterface", "Combinatorics", "ConstructionBase", "DataStructures", "Dictionaries", "DocStringExtensions", "DynamicPolynomials", "EnumX", "ExproniconLite", "Graphs", "LinearAlgebra", "MacroTools", "Moshi", "MultivariatePolynomials", "MutableArithmetics", "NaNMath", "PrecompileTools", "ReadOnlyArrays", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "TaskLocalValues", "TermInterface", "WeakCacheSets"] +git-tree-sha1 = "ae8741c34009171ee8e46d5c209cf0a15c469928" uuid = "d1185830-fcd6-423d-90d6-eec64667417b" -version = "4.20.2" +version = "4.26.0" [deps.SymbolicUtils.extensions] SymbolicUtilsChainRulesCoreExt = "ChainRulesCore" @@ -2782,9 +2623,9 @@ version = "4.20.2" [[deps.Symbolics]] deps = ["ADTypes", "AbstractPlutoDingetjes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "Moshi", "MultivariatePolynomials", "MutableArithmetics", "NaNMath", "PrecompileTools", "Preferences", "Primes", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLPublic", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] -git-tree-sha1 = "b746b6bb7a4d999c201effbccc9d5bf46a9bc43f" +git-tree-sha1 = "85bb4be51a7e90e531b1faa926b9497f436ca535" uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7" -version = "7.16.1" +version = "7.21.0" [deps.Symbolics.extensions] SymbolicsD3TreesExt = "D3Trees" @@ -2856,17 +2697,11 @@ deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" version = "1.11.0" -[[deps.ThreadingUtilities]] -deps = ["ManualMemory"] -git-tree-sha1 = "d969183d3d244b6c33796b5ed01ab97328f2db85" -uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" -version = "0.5.5" - [[deps.TiffImages]] -deps = ["ColorTypes", "DataStructures", "DocStringExtensions", "FileIO", "FixedPointNumbers", "IndirectArrays", "Inflate", "Mmap", "OffsetArrays", "PkgVersion", "PrecompileTools", "ProgressMeter", "SIMD", "UUIDs"] -git-tree-sha1 = "08c10bc34f4e7743f530793d0985bf3c254e193d" +deps = ["CodecZstd", "ColorTypes", "DataStructures", "DocStringExtensions", "FileIO", "FixedPointNumbers", "IndirectArrays", "Inflate", "Mmap", "OffsetArrays", "PkgVersion", "PrecompileTools", "ProgressMeter", "SIMD", "UUIDs"] +git-tree-sha1 = "9ca5f1f2d42f80df4b8c9f6ab5a64f438bbd9976" uuid = "731e570b-9d59-4bfa-96dc-6df516fadf69" -version = "0.11.8" +version = "0.11.9" [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] @@ -2951,9 +2786,9 @@ version = "0.1.0" [[deps.WeakRefStrings]] deps = ["DataAPI", "InlineStrings", "Parsers"] -git-tree-sha1 = "b1be2855ed9ed8eac54e5caff2afcdb442d52c23" +git-tree-sha1 = "0716e01c3b40413de5dedbc9c5c69f27cddfddfc" uuid = "ea10d353-3f73-51f8-a26c-33c1cb351aa5" -version = "1.4.2" +version = "1.4.3" [[deps.Weave]] deps = ["Base64", "Dates", "Highlights", "JSON", "Markdown", "Mustache", "Pkg", "Printf", "REPL", "RelocatableFolders", "Requires", "Serialization", "YAML"] @@ -2985,17 +2820,15 @@ uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" version = "2.15.1+0" [[deps.XSteam]] -git-tree-sha1 = "3f0bd3ea574a976b2ead6fbc975b49fa4ba0b385" -repo-rev = "f2a1c589054cfd6bba307985a3a534b6f5a1863b" -repo-url = "https://github.com/hzgzh/XSteam.jl.git" +git-tree-sha1 = "bfe2782c68eadd44e719a00bbaf96c83b921e4e1" uuid = "95ff35a0-be81-11e9-2ca3-5b4e338e8476" version = "0.3.0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "9cce64c0fdd1960b597ba7ecda2950b5ed957438" +git-tree-sha1 = "b29c22e245d092b8b4e8d3c09ad7baa586d9f573" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.8.2+0" +version = "5.8.3+0" [[deps.Xorg_libX11_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] @@ -3035,9 +2868,9 @@ version = "0.9.12+0" [[deps.Xorg_libpciaccess_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "4909eb8f1cbf6bd4b1c30dd18b2ead9019ef2fad" +git-tree-sha1 = "58972370b81423fc546c56a60ed1a009450177c3" uuid = "a65dc6b1-eb27-53a1-bb3e-dea574b5389e" -version = "0.18.1+0" +version = "0.19.0+0" [[deps.Xorg_libxcb_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXau_jll", "Xorg_libXdmcp_jll"] @@ -3072,7 +2905,7 @@ version = "4.3.6+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.3.1+2" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -3088,9 +2921,9 @@ version = "0.2.3+0" [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" +git-tree-sha1 = "850b06095ee71f0135d644ffd8a52850699581ed" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.13.1+0" +version = "3.13.3+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] @@ -3101,7 +2934,7 @@ version = "0.17.4+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.15.0+0" +version = "5.11.0+0" [[deps.libdrm_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libpciaccess_jll"] @@ -3117,9 +2950,9 @@ version = "2.0.4+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" +git-tree-sha1 = "e51150d5ab85cee6fc36726850f0e627ad2e4aba" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.55+0" +version = "1.6.58+0" [[deps.libsixel_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "libpng_jll"] @@ -3154,7 +2987,7 @@ version = "1.6.0+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.64.0+1" +version = "1.59.0+0" [[deps.oneTBB_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] @@ -3163,9 +2996,9 @@ uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" version = "2022.0.0+1" [[deps.p7zip_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.7.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] diff --git a/benchmarks/ModelingToolkit/Multibody_Robot.jmd b/benchmarks/ModelingToolkit/Multibody_Robot.jmd index 6ec19500d..edcd8d2cc 100644 --- a/benchmarks/ModelingToolkit/Multibody_Robot.jmd +++ b/benchmarks/ModelingToolkit/Multibody_Robot.jmd @@ -42,7 +42,7 @@ const tspan = (0.0, 4.0) ```julia function julia_multibody_timings(ssys) time_prob = @elapsed prob = ODEProblem(ssys, u0, tspan) - time_solve = @elapsed sol = solve(prob, Rodas5P(autodiff = false)); # With autodiff=true this takes over 150 seconds + time_solve = @elapsed sol = solve(prob, Rodas5P(autodiff = AutoFiniteDiff())); # With autodiff=AutoForwardDiff() this takes over 150 seconds tv = 0:0.01:4 time_extract_data = @elapsed data = sol(tv, diff --git a/benchmarks/ModelingToolkit/Project.toml b/benchmarks/ModelingToolkit/Project.toml index 96b9e4134..ce4727978 100644 --- a/benchmarks/ModelingToolkit/Project.toml +++ b/benchmarks/ModelingToolkit/Project.toml @@ -8,6 +8,7 @@ ModelingToolkit = "961ee093-0014-501f-94e3-6117800e7a78" ModelingToolkitStandardLibrary = "16a59e39-deab-5bd0-87e4-056b12336739" OMJulia = "0f4fe800-344e-11e9-2949-fb537ad918e1" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" +OrdinaryDiffEqRosenbrock = "43230ef6-c299-4910-a778-202eb28ce4ce" Polynomials = "f27b6e38-b328-58d1-80ce-0feddd5e7a45" Printf = "de0858da-6303-5e67-8744-51eddeeeb8d7" SciMLBenchmarks = "31c91b34-3c75-11e9-0341-95557aab0344" @@ -23,7 +24,8 @@ LinearSolve = "3" ModelingToolkit = "9, 10, 11" ModelingToolkitStandardLibrary = "2" OMJulia = "0.3" -OrdinaryDiffEq = "6" +OrdinaryDiffEq = "7" +OrdinaryDiffEqRosenbrock = "2" Polynomials = "4" SciMLBenchmarks = "0.1" Symbolics = "5.32, 6, 7" diff --git a/benchmarks/ModelingToolkit/RCCircuit.jmd b/benchmarks/ModelingToolkit/RCCircuit.jmd index 96c16dcb4..fdc50ea71 100644 --- a/benchmarks/ModelingToolkit/RCCircuit.jmd +++ b/benchmarks/ModelingToolkit/RCCircuit.jmd @@ -11,6 +11,7 @@ runtimes of MTK vs OpenModelica and Dymola. ```julia using ModelingToolkit, OrdinaryDiffEq, BenchmarkTools, ModelingToolkitStandardLibrary, OMJulia, CairoMakie +using OrdinaryDiffEqRosenbrock using ModelingToolkitStandardLibrary.Blocks using ModelingToolkitStandardLibrary.Electrical ``` @@ -53,7 +54,7 @@ function compile_run_problem(sys, u0, ps; duref = nothing) t_fode = time() - t0 duref === nothing || @assert duref ≈ du t_run = @belapsed $ff($du, $u0, $p, 0.0) - t_solve = @elapsed sol = solve(prob, Rodas5(autodiff = false)) + t_solve = @elapsed sol = solve(prob, Rodas5(autodiff = AutoFiniteDiff())) @assert SciMLBase.successful_retcode(sol) (t_fode, t_run, t_solve), du end diff --git a/benchmarks/ModelingToolkit/ThermalFluid.jmd b/benchmarks/ModelingToolkit/ThermalFluid.jmd index 67307a59e..08c5f7246 100644 --- a/benchmarks/ModelingToolkit/ThermalFluid.jmd +++ b/benchmarks/ModelingToolkit/ThermalFluid.jmd @@ -264,7 +264,7 @@ function TestBenchPreinsulated(; name, L = 1.0, dn = 0.05, t_layer = [0.0056, 0. end function compile_run_problem(sys; - solver = FBDF(; autodiff = true), + solver = FBDF(; autodiff = AutoForwardDiff()), duref = nothing) tspan = (0.0, 19 * 3600.0) t0 = time() diff --git a/benchmarks/MultiLanguage/Manifest.toml b/benchmarks/MultiLanguage/Manifest.toml index 7a307b60e..88b0fa871 100644 --- a/benchmarks/MultiLanguage/Manifest.toml +++ b/benchmarks/MultiLanguage/Manifest.toml @@ -1,1233 +1,2150 @@ # This file is machine-generated - editing it directly is not advised -[[AbstractTrees]] -git-tree-sha1 = "03e0550477d86222521d254b741d470ba17ea0b5" +julia_version = "1.11.9" +manifest_format = "2.0" +project_hash = "e6c1b055d6ce7496b19c1a9d44c372f72bdc2aef" + +[[deps.ADTypes]] +git-tree-sha1 = "bbc22a9a08a0ef6460041086d8a7b27940ed4ffd" +uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" +version = "1.22.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.AbstractPlutoDingetjes]] +deps = ["Pkg"] +git-tree-sha1 = "6e1d2a35f2f90a4bc7c2ed98079b2ba09c35b83a" +uuid = "6e696c72-6542-2067-7265-42206c756150" +version = "1.3.2" + +[[deps.AbstractTrees]] +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.3.4" +version = "0.4.5" -[[Adapt]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "af92965fb30777147966f58acb05da51c5616b5f" +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = 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"a2a6695c-b41b-5b7d-aed9-dbfdeacea5d7" -version = "0.3.0" +version = "0.5.29" -[[TriangularSolve]] -deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"] -git-tree-sha1 = "c3ab8b77b82fd92e2b6eea8a275a794d5a6e4011" -uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf" -version = "0.1.9" + [deps.TimerOutputs.extensions] + FlameGraphsExt = "FlameGraphs" -[[URIs]] -git-tree-sha1 = "97bbe755a53fe859669cd907f2d96aee8d2c1355" -uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.3.0" + [deps.TimerOutputs.weakdeps] + FlameGraphs = "08572546-2f56-4bcf-ba4e-bab62c3a3f89" -[[UUIDs]] +[[deps.TruncatedStacktraces]] +deps = ["InteractiveUtils", "MacroTools", "Preferences"] +git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" +uuid = "781d530d-4396-4725-bb49-402e4bee1e77" +version = "1.4.0" + +[[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +version = "1.11.0" -[[UnPack]] +[[deps.UnPack]] git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" uuid = "3a884ed6-31ef-47d7-9d2a-63182c4928ed" version = "1.0.2" -[[Unicode]] +[[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +version = "1.11.0" -[[Unitful]] -deps = ["ConstructionBase", "Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "b95e0b8a8d1b6a6c3e0b3ca393a7a285af47c264" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.10.1" - -[[VectorizationBase]] -deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "Hwloc", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static"] -git-tree-sha1 = "6e261bff5c9f2537776165dea3067df9de4440cf" -uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" -version = "0.21.23" - -[[VersionParsing]] -git-tree-sha1 = "e575cf85535c7c3292b4d89d89cc29e8c3098e47" +[[deps.VersionParsing]] +git-tree-sha1 = "58d6e80b4ee071f5efd07fda82cb9fbe17200868" uuid = "81def892-9a0e-5fdd-b105-ffc91e053289" -version = "1.2.1" +version = "1.3.0" -[[VertexSafeGraphs]] -deps = ["Graphs"] -git-tree-sha1 = "8351f8d73d7e880bfc042a8b6922684ebeafb35c" -uuid = "19fa3120-7c27-5ec5-8db8-b0b0aa330d6f" -version = "0.2.0" +[[deps.WeakCacheSets]] +git-tree-sha1 = "386050ae4353310d8ff9c228f83b1affca2f7f38" +uuid = "d30d5f5c-d141-4870-aa07-aabb0f5fe7d5" +version = "0.1.0" -[[Weave]] +[[deps.Weave]] deps = ["Base64", "Dates", "Highlights", "JSON", "Markdown", "Mustache", "Pkg", "Printf", "REPL", "RelocatableFolders", "Requires", "Serialization", "YAML"] -git-tree-sha1 = "d62575dcea5aeb2bfdfe3b382d145b65975b5265" +git-tree-sha1 = "092217eb5443926d200ae9325f103906efbb68b1" uuid = "44d3d7a6-8a23-5bf8-98c5-b353f8df5ec9" -version = "0.10.10" +version = "0.10.12" -[[XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "1acf5bdf07aa0907e0a37d3718bb88d4b687b74a" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.9.12+0" - -[[YAML]] +[[deps.YAML]] deps = ["Base64", "Dates", "Printf", "StringEncodings"] -git-tree-sha1 = "3c6e8b9f5cdaaa21340f841653942e1a6b6561e5" +git-tree-sha1 = "a1c0c7585346251353cddede21f180b96388c403" uuid = "ddb6d928-2868-570f-bddf-ab3f9cf99eb6" -version = "0.4.7" +version = "0.4.16" -[[ZMQ]] -deps = ["FileWatching", "Sockets", "ZeroMQ_jll"] -git-tree-sha1 = "fc68e8a3719166950a0f3e390a14c7302c48f8de" +[[deps.ZMQ]] +deps = ["FileWatching", "PrecompileTools", "Printf", "Sockets", "ZeroMQ_jll"] +git-tree-sha1 = "5f1c7008e2258c61af0eafef8c1f536b9fffbbd2" uuid = "c2297ded-f4af-51ae-bb23-16f91089e4e1" -version = "1.2.1" +version = "1.5.1" -[[ZeroMQ_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "libsodium_jll"] -git-tree-sha1 = "fe5c65a526f066fb3000da137d5785d9649a8a47" +[[deps.ZeroMQ_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "libsodium_jll"] +git-tree-sha1 = "766d90db2817565b667c1cc9cc420d668f2e8dba" uuid = "8f1865be-045e-5c20-9c9f-bfbfb0764568" -version = "4.3.4+0" +version = "4.3.6+0" -[[Zlib_jll]] +[[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" +version = "1.2.13+1" -[[ZygoteRules]] -deps = ["MacroTools"] -git-tree-sha1 = "8c1a8e4dfacb1fd631745552c8db35d0deb09ea0" -uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.2" - -[[libblastrampoline_jll]] -deps = ["Artifacts", "Libdl", "OpenBLAS_jll"] +[[deps.libblastrampoline_jll]] +deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" +version = "5.11.0+0" -[[libsodium_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "848ab3d00fe39d6fbc2a8641048f8f272af1c51e" +[[deps.libsodium_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "011b0a7331b41c25524b64dc42afc9683ee89026" uuid = "a9144af2-ca23-56d9-984f-0d03f7b5ccf8" -version = "1.0.20+0" +version = "1.0.21+0" -[[nghttp2_jll]] +[[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" +version = "1.59.0+0" + +[[deps.oneTBB_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "1350188a69a6e46f799d3945beef36435ed7262f" +uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" +version = "2022.0.0+1" -[[p7zip_jll]] +[[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" +version = "17.4.0+2" diff --git a/benchmarks/MultiLanguage/Project.toml b/benchmarks/MultiLanguage/Project.toml index 9f7b72b60..9469a9c99 100644 --- a/benchmarks/MultiLanguage/Project.toml +++ b/benchmarks/MultiLanguage/Project.toml @@ -4,15 +4,23 @@ LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" MATLABDiffEq = "e2752cbe-bcf4-5895-8727-84ebc14a76bd" ODEInterface = "54ca160b-1b9f-5127-a996-1867f4bc2a2c" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" +OrdinaryDiffEqFIRK = "5960d6e9-dd7a-4743-88e7-cf307b64f125" +OrdinaryDiffEqLowOrderRK = "1344f307-1e59-4825-a18e-ace9aa3fa4c6" +OrdinaryDiffEqRosenbrock = "43230ef6-c299-4910-a778-202eb28ce4ce" ParameterizedFunctions = "65888b18-ceab-5e60-b2b9-181511a3b968" SciMLBenchmarks = "31c91b34-3c75-11e9-0341-95557aab0344" +SciMLLogging = "a6db7da4-7206-11f0-1eab-35f2a5dbe1d1" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" [compat] -DiffEqDevTools = "2.22" +DiffEqDevTools = "3" MATLABDiffEq = "1.1" ODEInterface = "0.5" -OrdinaryDiffEq = "6" +OrdinaryDiffEq = "7" +OrdinaryDiffEqFIRK = "2" +OrdinaryDiffEqLowOrderRK = "2" +OrdinaryDiffEqRosenbrock = "2" ParameterizedFunctions = "5.3" SciMLBenchmarks = "0.1" +SciMLLogging = "1, 2" StaticArrays = "1" diff --git a/benchmarks/MultiLanguage/ode_wrapper_packages.jmd b/benchmarks/MultiLanguage/ode_wrapper_packages.jmd index 171de78e8..0bce72968 100644 --- a/benchmarks/MultiLanguage/ode_wrapper_packages.jmd +++ b/benchmarks/MultiLanguage/ode_wrapper_packages.jmd @@ -31,6 +31,8 @@ More wrappers will continue to be added as necessary. ```julia using ParameterizedFunctions, MATLABDiffEq, OrdinaryDiffEq, ODEInterfaceDiffEq, Plots, Sundials, SciPyDiffEq, deSolveDiffEq +using OrdinaryDiffEqFIRK, OrdinaryDiffEqLowOrderRK, OrdinaryDiffEqRosenbrock +using SciMLLogging using DiffEqDevTools using LinearAlgebra, StaticArrays ``` @@ -89,7 +91,7 @@ wp = WorkPrecisionSet([prob, staticprob], abstols, reltols, setups; names = labels, print_names = true, appxsol = [test_sol, test_sol], dense = false, save_everystep = false, numruns = 100, maxiters = 10000000, - timeseries_errors = false, verbose = false) + timeseries_errors = false, verbose = SciMLLogging.None()) plot(wp, title = "Non-stiff 1: Lotka-Volterra", legend = :outertopleft, color = permutedims([repeat([:LightGreen], 3)..., repeat([:DarkGreen], 3)..., :Red, repeat([:Orange], 2)..., repeat([:Yellow], 3)..., @@ -152,7 +154,7 @@ wp = WorkPrecisionSet([prob, staticprob], abstols, reltols, setups; names = labels, print_names = true, appxsol = [test_sol, test_sol], dense = false, save_everystep = false, numruns = 100, maxiters = 10000000, - timeseries_errors = false, verbose = false) + timeseries_errors = false, verbose = SciMLLogging.None()) plot(wp, title = "Non-stiff 2: Rigid-Body", legend = :outertopleft, color = permutedims([repeat([:LightGreen], 3)..., repeat([:DarkGreen], 3)..., :Red, repeat([:Orange], 2)..., repeat([:Yellow], 3)..., @@ -214,7 +216,7 @@ labels = ["Julia: Rosenbrock23" wp = WorkPrecisionSet([prob, staticprob], abstols, reltols, setups; names = labels, print_names = true, - dense = false, verbose = false, + dense = false, verbose = SciMLLogging.None(), save_everystep = false, appxsol = [test_sol, test_sol], maxiters = Int(1e5)) plot(wp, title = "Stiff 1: ROBER", legend = :outertopleft, @@ -287,7 +289,7 @@ labels = ["Julia: Rosenbrock23" wp = WorkPrecisionSet([prob, staticprob], abstols, reltols, setups; names = labels, print_names = true, - dense = false, verbose = false, + dense = false, verbose = SciMLLogging.None(), save_everystep = false, appxsol = [test_sol, test_sol], maxiters = Int(1e5), numruns = 100) plot(wp, title = "Stiff 2: Hires", legend = :outertopleft, diff --git a/benchmarks/NBodySimulator/Manifest.toml b/benchmarks/NBodySimulator/Manifest.toml index 1fc38ed8c..3a72a607d 100644 --- a/benchmarks/NBodySimulator/Manifest.toml +++ b/benchmarks/NBodySimulator/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.10" +julia_version = "1.11.9" manifest_format = "2.0" -project_hash = "bbf175827cda702836c114b06c7ee50c2803f73c" +project_hash = "cb49562e4679b442d8a163a26e2f7ca5f649ef8e" [[deps.ADTypes]] -git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" +git-tree-sha1 = "bbc22a9a08a0ef6460041086d8a7b27940ed4ffd" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.21.0" +version = "1.22.0" weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] [deps.ADTypes.extensions] @@ -33,9 +33,9 @@ version = "0.4.5" [[deps.Accessors]] deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] -git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +git-tree-sha1 = "2eeb2c9bef11013efc6f8f97f32ee59b146b09fb" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.43" +version = "0.1.44" [deps.Accessors.extensions] AxisKeysExt = "AxisKeys" @@ -57,9 +57,9 @@ version = "0.1.43" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "35ea197a51ce46fcd01c4a44befce0578a1aaeca" +git-tree-sha1 = "0761717147821d696c9470a7a86364b2fbd22fd8" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.5.0" +version = "4.5.2" weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] @@ -74,7 +74,7 @@ version = "1.1.3" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.Arpack]] deps = ["Arpack_jll", "Libdl", "LinearAlgebra", "Logging"] @@ -90,9 +90,9 @@ version = "3.5.2+0" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "78b3a7a536b4b0a747a0f296ea77091ca0a9f9a3" +git-tree-sha1 = "54f895554d05c83e3dd59f6a396671dae8999573" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.23.0" +version = "7.24.0" [deps.ArrayInterface.extensions] ArrayInterfaceAMDGPUExt = "AMDGPU" @@ -126,6 +126,25 @@ version = "7.23.0" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +version = "1.11.0" + +[[deps.Atomix]] +deps = ["UnsafeAtomics"] +git-tree-sha1 = "b8651b2eb5796a386b0398a20b519a6a6150f75c" +uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" +version = "1.1.3" + + [deps.Atomix.extensions] + AtomixCUDAExt = "CUDA" + AtomixMetalExt = "Metal" + AtomixOpenCLExt = "OpenCL" + AtomixoneAPIExt = "oneAPI" + + [deps.Atomix.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + OpenCL = "08131aa3-fb12-5dee-8b74-c09406e224a2" + oneAPI = "8f75cd03-7ff8-4ecb-9b8f-daf728133b1b" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] @@ -135,29 +154,24 @@ version = "1.1.0" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.BenchmarkTools]] -deps = ["Compat", "JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"] -git-tree-sha1 = "7fecfb1123b8d0232218e2da0c213004ff15358d" +deps = ["Compat", "JSON", "Logging", "PrecompileTools", "Printf", "Profile", "Statistics", "UUIDs"] +git-tree-sha1 = "9670d3febc2b6da60a0ae57846ba74670290653f" uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" -version = "1.6.3" +version = "1.8.0" [[deps.BitFlags]] git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" version = "0.1.9" -[[deps.BitTwiddlingConvenienceFunctions]] -deps = ["Static"] -git-tree-sha1 = "f21cfd4950cb9f0587d5067e69405ad2acd27b87" -uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" -version = "0.1.6" - [[deps.BracketingNonlinearSolve]] deps = ["CommonSolve", "ConcreteStructs", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "4999dff8efd76814f6662519b985aeda975a1924" +git-tree-sha1 = "7ad7171d693ae5552ac43862e7f6b61df4471c2b" uuid = "70df07ce-3d50-431d-a3e7-ca6ddb60ac1e" -version = "1.11.0" +version = "1.12.1" weakdeps = ["ChainRulesCore", "ForwardDiff"] [deps.BracketingNonlinearSolve.extensions] @@ -170,34 +184,27 @@ git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" version = "1.0.9+0" -[[deps.CPUSummary]] -deps = ["CpuId", "IfElse", "PrecompileTools", "Preferences", "Static"] -git-tree-sha1 = "f3a21d7fc84ba618a779d1ed2fcca2e682865bab" -uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" -version = "0.2.7" +[[deps.CEnum]] +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" +uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" +version = "0.5.0" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d0efe2c6fdcdaa1c161d206aa8b933788397ec71" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.5+1" +version = "1.18.6+0" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" +git-tree-sha1 = "12177ad6b3cad7fd50c8b3825ce24a99ad61c18f" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.26.0" +version = "1.26.1" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] ChainRulesCoreSparseArraysExt = "SparseArrays" -[[deps.CloseOpenIntervals]] -deps = ["Static", "StaticArrayInterface"] -git-tree-sha1 = "05ba0d07cd4fd8b7a39541e31a7b0254704ea581" -uuid = "fb6a15b2-703c-40df-9091-08a04967cfa9" -version = "0.1.13" - [[deps.Clustering]] deps = ["Distances", "LinearAlgebra", "NearestNeighbors", "Printf", "Random", "SparseArrays", "Statistics", "StatsBase"] git-tree-sha1 = "3e22db924e2945282e70c33b75d4dde8bfa44c94" @@ -221,13 +228,11 @@ deps = ["FixedPointNumbers", "Random"] git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" version = "0.12.1" +weakdeps = ["StyledStrings"] [deps.ColorTypes.extensions] StyledStringsExt = "StyledStrings" - [deps.ColorTypes.weakdeps] - StyledStrings = "f489334b-da3d-4c2e-b8f0-e476e12c162b" - [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" @@ -255,11 +260,6 @@ git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.1" -[[deps.CommonWorldInvalidations]] -git-tree-sha1 = "ae52d1c52048455e85a387fbee9be553ec2b68d0" -uuid = "f70d9fcc-98c5-4d4a-abd7-e4cdeebd8ca8" -version = "1.0.0" - [[deps.Compat]] deps = ["TOML", "UUIDs"] git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" @@ -321,12 +321,6 @@ git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" version = "0.6.3" -[[deps.CpuId]] -deps = ["Markdown"] -git-tree-sha1 = "fcbb72b032692610bfbdb15018ac16a36cf2e406" -uuid = "adafc99b-e345-5852-983c-f28acb93d879" -version = "0.3.1" - [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" @@ -339,15 +333,15 @@ version = "1.16.0" [[deps.DataFrames]] deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "d8928e9169ff76c6281f39a659f9bca3a573f24c" +git-tree-sha1 = "5fab31e2e01e70ad66e3e24c968c264d1cf166d6" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.8.1" +version = "1.8.2" [[deps.DataStructures]] deps = ["OrderedCollections"] -git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" +git-tree-sha1 = "e86f4a2805f7f19bec5129bc9150c38208e5dc23" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.19.3" +version = "0.19.4" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -357,6 +351,7 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" [[deps.Dbus_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] @@ -371,14 +366,15 @@ uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" version = "1.9.1" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "1719cd1b0a12e01775dc6db1577dd6ace1798fee" +deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "2d7ca58e6ce2d1f7a435773d73d111741e283070" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.210.1" +version = "7.1.0" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" DiffEqBaseChainRulesCoreExt = "ChainRulesCore" + DiffEqBaseDynamicQuantitiesExt = "DynamicQuantities" DiffEqBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] DiffEqBaseFlexUnitsExt = "FlexUnits" DiffEqBaseForwardDiffExt = ["ForwardDiff"] @@ -397,6 +393,7 @@ version = "6.210.1" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" + DynamicQuantities = "06fc5a27-2a28-4c7c-a15d-362465fb6821" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FlexUnits = "76e01b6b-c995-4ce6-8559-91e72a3d4e95" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" @@ -413,9 +410,9 @@ version = "6.210.1" [[deps.DiffEqCallbacks]] deps = ["ConcreteStructs", "DataStructures", "DiffEqBase", "DifferentiationInterface", "LinearAlgebra", "Markdown", "PrecompileTools", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "f17b863c2d5d496363fe36c8d8535cc6a33c9952" +git-tree-sha1 = "51f445c25b80c26c83c61520cde214adf8c05227" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "4.12.0" +version = "4.17.0" [deps.DiffEqCallbacks.extensions] DiffEqCallbacksFunctorsExt = "Functors" @@ -437,9 +434,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +git-tree-sha1 = "d0250552e42bf7cc36479fd38a6e30004c9e8c2b" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.7.16" +version = "0.7.17" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -449,7 +446,7 @@ version = "0.7.16" DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] - DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGPUArraysCoreExt = ["GPUArraysCore", "Adapt"] DifferentiationInterfaceGTPSAExt = "GTPSA" DifferentiationInterfaceMooncakeExt = "Mooncake" DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] @@ -463,6 +460,7 @@ version = "0.7.16" DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] [deps.DifferentiationInterface.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" @@ -499,12 +497,13 @@ weakdeps = ["ChainRulesCore", "SparseArrays"] [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" +git-tree-sha1 = "e421c1938fafab0165b04dc1a9dbe2a26272952c" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.123" +version = "0.25.125" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -532,9 +531,9 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.7" [[deps.EnzymeCore]] -git-tree-sha1 = "990991b8aa76d17693a98e3a915ac7aa49f08d1a" +git-tree-sha1 = "c6ee69ee502060982d12dbaaf3d8fcb4e835a0d1" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.8.18" +version = "0.8.20" weakdeps = ["Adapt", "ChainRulesCore"] [deps.EnzymeCore.extensions] @@ -555,30 +554,15 @@ version = "0.1.11" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "27af30de8b5445644e8ffe3bcb0d72049c089cf1" +git-tree-sha1 = "8f05e9a2e7c2e3eb524102bb2926c5743c07fbe1" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.7.3+0" - -[[deps.ExponentialUtilities]] -deps = ["Adapt", "ArrayInterface", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "PrecompileTools", "Printf", "SparseArrays", "libblastrampoline_jll"] -git-tree-sha1 = "cc294ead6a85e975a8519dd4a0a6cb294eeb18d1" -uuid = "d4d017d3-3776-5f7e-afef-a10c40355c18" -version = "1.30.0" -weakdeps = ["StaticArrays"] - - [deps.ExponentialUtilities.extensions] - ExponentialUtilitiesStaticArraysExt = "StaticArrays" +version = "2.8.0+0" [[deps.ExprTools]] git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" version = "0.1.10" -[[deps.ExproniconLite]] -git-tree-sha1 = "c13f0b150373771b0fdc1713c97860f8df12e6c2" -uuid = "55351af7-c7e9-48d6-89ff-24e801d99491" -version = "0.10.14" - [[deps.FFMPEG]] deps = ["FFMPEG_jll"] git-tree-sha1 = "95ecf07c2eea562b5adbd0696af6db62c0f52560" @@ -586,10 +570,10 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.5" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "01ba9d15e9eae375dc1eb9589df76b3572acd3f2" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libva_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "cac41ca6b2d399adfc95e51240566f8a60a80806" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "8.0.1+0" +version = "8.1.0+0" [[deps.FFTA]] deps = ["AbstractFFTs", "DocStringExtensions", "LinearAlgebra", "MuladdMacro", "Primes", "Random", "Reexport"] @@ -598,22 +582,24 @@ uuid = "b86e33f2-c0db-4aa1-a6e0-ab43e668529e" version = "0.3.1" [[deps.FastBroadcast]] -deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "ab1b34570bcdf272899062e1a56285a53ecaae08" +deps = ["ArrayInterface", "LinearAlgebra"] +git-tree-sha1 = "7feeed2c9a7fa272189a5561bebf0c4ccaedb6ec" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.3.5" +version = "1.3.2" + + [deps.FastBroadcast.extensions] + FastBroadcastPolyesterExt = "Polyester" + FastBroadcastStaticExt = "Static" + + [deps.FastBroadcast.weakdeps] + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" + Static = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" version = "0.3.2" -[[deps.FastGaussQuadrature]] -deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "0044e9f5e49a57e88205e8f30ab73928b05fe5b6" -uuid = "442a2c76-b920-505d-bb47-c5924d526838" -version = "1.1.0" - [[deps.FastPower]] git-tree-sha1 = "862831f78c7a48681a074ecc9aac09f2de563f71" uuid = "a4df4552-cc26-4903-aec0-212e50a0e84b" @@ -639,9 +625,9 @@ version = "1.3.1" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "6522cfb3b8fe97bec632252263057996cbd3de20" +git-tree-sha1 = "8e9c059d6857607253e837730dbf780b6b151acd" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.18.0" +version = "1.19.0" weakdeps = ["HTTP"] [deps.FileIO.extensions] @@ -649,6 +635,7 @@ weakdeps = ["HTTP"] [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" +version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] @@ -665,9 +652,9 @@ weakdeps = ["PDMats", "SparseArrays", "StaticArrays", "Statistics"] [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "9340ca07ca27093ff68418b7558ca37b05f8aeb1" +git-tree-sha1 = "f7017a4f337f8df189fcce98e32b67a1298a2115" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.29.0" +version = "2.31.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -700,9 +687,9 @@ version = "1.3.7" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "eef4c86803f47dcb61e9b8790ecaa96956fdd8ae" +git-tree-sha1 = "cddeab6487248a39dae1a960fff0ac17b2a28888" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "1.3.2" +version = "1.3.3" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -710,9 +697,9 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "2c5512e11c791d1baed2049c5652441b28fc6a31" +git-tree-sha1 = "70329abc09b886fd2c5d94ad2d9527639c421e3e" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.4+0" +version = "2.14.3+1" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -726,20 +713,42 @@ uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" version = "1.1.3" [[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +deps = ["FunctionWrappers", "PrecompileTools", "TruncatedStacktraces"] +git-tree-sha1 = "c1b0c3a166a2a393257aa888787ca817532e14ce" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" +version = "1.8.0" + + [deps.FunctionWrappersWrappers.extensions] + FunctionWrappersWrappersEnzymeExt = ["Enzyme", "EnzymeCore"] + FunctionWrappersWrappersMooncakeExt = "Mooncake" + + [deps.FunctionWrappersWrappers.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" +version = "1.11.0" [[deps.GLFW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] -git-tree-sha1 = "b7bfd56fa66616138dfe5237da4dc13bbd83c67f" +git-tree-sha1 = "9e0fb9e54594c47f278d75063980e43066e26e20" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.4.1+0" +version = "3.4.1+1" + +[[deps.GPUArrays]] +deps = ["Adapt", "GPUArraysCore", "KernelAbstractions", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "ScopedValues", "Serialization", "SparseArrays", "Statistics"] +git-tree-sha1 = "34fd745547978beb471f029f447290ef4dbc7bbd" +uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" +version = "11.5.3" + + [deps.GPUArrays.extensions] + JLD2Ext = "JLD2" + + [deps.GPUArrays.weakdeps] + JLD2 = "033835bb-8acc-5ee8-8aae-3f567f8a3819" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -763,12 +772,6 @@ git-tree-sha1 = "be8a1b8065959e24fdc1b51402f39f3b6f0f6653" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" version = "0.73.24+0" -[[deps.GenericSchur]] -deps = ["LinearAlgebra", "Printf"] -git-tree-sha1 = "a694e2a57394e409f7a11ee0977362a9fafcb8c7" -uuid = "c145ed77-6b09-5dd9-b285-bf645a82121e" -version = "0.5.6" - [[deps.GettextRuntime_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll"] git-tree-sha1 = "45288942190db7c5f760f59c04495064eedf9340" @@ -795,9 +798,9 @@ version = "3.7.0+0" [[deps.Git_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "dc34a3e3d96b4ed305b641e626dc14c12b7824b8" +git-tree-sha1 = "0dd4cfb426924210c8f42742751cbde74b27bfa3" uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb" -version = "2.53.0+0" +version = "2.54.0+0" [[deps.Glib_jll]] deps = ["Artifacts", "GettextRuntime_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] @@ -828,6 +831,11 @@ git-tree-sha1 = "f923f9a774fcf3f5cb761bfa43aeadd689714813" uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" version = "8.5.1+0" +[[deps.HashArrayMappedTries]] +git-tree-sha1 = "2eaa69a7cab70a52b9687c8bf950a5a93ec895ae" +uuid = "076d061b-32b6-4027-95e0-9a2c6f6d7e74" +version = "0.2.0" + [[deps.Highlights]] deps = ["DocStringExtensions", "InteractiveUtils", "REPL"] git-tree-sha1 = "9e13b8d8b1367d9692a90ea4711b4278e4755c32" @@ -854,11 +862,6 @@ version = "1.34.4" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" Revise = "295af30f-e4ad-537b-8983-00126c2a3abe" -[[deps.IfElse]] -git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" -uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" -version = "0.1.1" - [[deps.InlineStrings]] git-tree-sha1 = "8f3d257792a522b4601c24a577954b0a8cd7334d" uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" @@ -886,6 +889,7 @@ version = "2025.2.0+0" [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" +version = "1.11.0" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] @@ -926,6 +930,12 @@ git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" +[[deps.JLArrays]] +deps = ["Adapt", "GPUArrays", "KernelAbstractions", "LinearAlgebra", "Random", "SparseArrays"] +git-tree-sha1 = "f3d234730c53e0e9fbac8de90c50ca13eae0d56b" +uuid = "27aeb0d3-9eb9-45fb-866b-73c2ecf80fcb" +version = "0.3.1" + [[deps.JLFzf]] deps = ["REPL", "Random", "fzf_jll"] git-tree-sha1 = "82f7acdc599b65e0f8ccd270ffa1467c21cb647b" @@ -944,17 +954,23 @@ git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.4" -[[deps.Jieko]] -deps = ["ExproniconLite"] -git-tree-sha1 = "2f05ed29618da60c06a87e9c033982d4f71d0b6c" -uuid = "ae98c720-c025-4a4a-838c-29b094483192" -version = "0.2.1" - [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "b6893345fd6658c8e475d40155789f4860ac3b21" +git-tree-sha1 = "c0c9b76f3520863909825cbecdef58cd63de705a" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.1.4+0" +version = "3.1.5+0" + +[[deps.KernelAbstractions]] +deps = ["Adapt", "Atomix", "InteractiveUtils", "MacroTools", "PrecompileTools", "Requires", "StaticArrays", "UUIDs"] +git-tree-sha1 = "f2e76d3ced51a2a9e185abc0b97494c7273f649f" +uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" +version = "0.9.41" +weakdeps = ["EnzymeCore", "LinearAlgebra", "SparseArrays"] + + [deps.KernelAbstractions.extensions] + EnzymeExt = "EnzymeCore" + LinearAlgebraExt = "LinearAlgebra" + SparseArraysExt = "SparseArrays" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTA", "Interpolations", "StatsBase"] @@ -976,9 +992,27 @@ version = "3.100.3+0" [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "aaafe88dccbd957a8d82f7d05be9b69172e0cee3" +git-tree-sha1 = "17b94ecafcfa45e8360a4fc9ca6b583b049e4e37" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "4.0.1+0" +version = "4.1.0+0" + +[[deps.LLVM]] +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "PrecompileTools", "Preferences", "Printf", "Unicode"] +git-tree-sha1 = "85592339c4363f40863f0b61f9cba80b885070c3" +uuid = "929cbde3-209d-540e-8aea-75f648917ca0" +version = "9.7.1" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" + +[[deps.LLVMExtra_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "f1d1adfff151fd02b4062d1af82df02052dc4a0c" +uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" +version = "0.0.42+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -986,12 +1020,6 @@ git-tree-sha1 = "eb62a3deb62fc6d8822c0c4bef73e4412419c5d8" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" version = "18.1.8+0" -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "1c602b1127f4751facb671441ca72715cc95938a" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.3+0" - [[deps.LaTeXStrings]] git-tree-sha1 = "dda21b8cbd6a6c40d9d02a73230f9d70fed6918c" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" @@ -1015,15 +1043,10 @@ version = "0.16.10" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" tectonic_jll = "d7dd28d6-a5e6-559c-9131-7eb760cdacc5" -[[deps.LayoutPointers]] -deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "a9eaadb366f5493a5654e843864c13d8b107548c" -uuid = "10f19ff3-798f-405d-979b-55457f8fc047" -version = "0.1.17" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" +version = "1.11.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] @@ -1033,16 +1056,17 @@ version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.4.0+0" +version = "8.6.0+0" [[deps.LibGit2]] deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +version = "1.11.0" [[deps.LibGit2_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.6.4+0" +version = "1.7.2+0" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] @@ -1051,6 +1075,7 @@ version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" +version = "1.11.0" [[deps.Libffi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1072,9 +1097,9 @@ version = "1.18.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "97bbca976196f2a1eb9607131cb108c69ec3f8a6" +git-tree-sha1 = "cc3ad4faf30015a3e8094c9b5b7f19e85bdf2386" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] @@ -1084,35 +1109,32 @@ version = "4.7.2+0" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d0205286d9eceadc518742860bf23f703779a3d6" +git-tree-sha1 = "d620582b1f0cbe2c72dd1d5bd195a9ce73370ab1" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.LineSearch]] deps = ["ADTypes", "CommonSolve", "ConcreteStructs", "FastClosures", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "SciMLBase", "SciMLJacobianOperators", "StaticArraysCore"] -git-tree-sha1 = "9f7253c0574b4b585c8909232adb890930da980a" +git-tree-sha1 = "fd58a77c92e7c8f1db25c9839127d52943a49349" uuid = "87fe0de2-c867-4266-b59a-2f0a94fc965b" -version = "0.1.6" -weakdeps = ["LineSearches"] +version = "0.1.9" [deps.LineSearch.extensions] LineSearchLineSearchesExt = "LineSearches" -[[deps.LineSearches]] -deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Printf"] -git-tree-sha1 = "738bdcacfef25b3a9e4a39c28613717a6b23751e" -uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.6.0" + [deps.LineSearch.weakdeps] + LineSearches = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +version = "1.11.0" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "86b5b25ca3b97d248133d055463c31ebc4de2bbb" +deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] +git-tree-sha1 = "42b5cb44317e89ef75dd841c9c8eba9045bf9ff0" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "3.65.0" +version = "3.75.0" [deps.LinearSolve.extensions] LinearSolveAMDGPUExt = "AMDGPU" @@ -1123,7 +1145,9 @@ version = "3.65.0" LinearSolveCUDAExt = "CUDA" LinearSolveCUDSSExt = "CUDSS" LinearSolveCUSOLVERRFExt = ["CUSOLVERRF", "SparseArrays"] + LinearSolveChainRulesCoreExt = "ChainRulesCore" LinearSolveCliqueTreesExt = ["CliqueTrees", "SparseArrays"] + LinearSolveElementalExt = "Elemental" LinearSolveEnzymeExt = ["EnzymeCore", "SparseArrays"] LinearSolveFastAlmostBandedMatricesExt = "FastAlmostBandedMatrices" LinearSolveFastLapackInterfaceExt = "FastLapackInterface" @@ -1135,7 +1159,9 @@ version = "3.65.0" LinearSolveKrylovKitExt = "KrylovKit" LinearSolveMetalExt = "Metal" LinearSolveMooncakeExt = "Mooncake" + LinearSolvePETScCSRExt = ["PETSc", "SparseArrays", "SparseMatricesCSR"] LinearSolvePETScExt = ["PETSc", "SparseArrays"] + LinearSolvePETScMPIExt = ["PETSc", "PartitionedArrays", "SparseArrays", "SparseMatricesCSR"] LinearSolveParUExt = ["ParU_jll", "SparseArrays"] LinearSolvePardisoExt = ["Pardiso", "SparseArrays"] LinearSolveRecursiveFactorizationExt = "RecursiveFactorization" @@ -1150,7 +1176,9 @@ version = "3.65.0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" CUSOLVERRF = "a8cc9031-bad2-4722-94f5-40deabb4245c" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" + Elemental = "902c3f28-d1ec-5e7e-8399-a24c3845ee38" EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" FastLapackInterface = "29a986be-02c6-4525-aec4-84b980013641" @@ -1166,8 +1194,10 @@ version = "3.65.0" PETSc = "ace2c81b-2b5f-4b1e-a30d-d662738edfe0" ParU_jll = "9e0b026c-e8ce-559c-a2c4-6a3d5c955bc9" Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" + PartitionedArrays = "5a9dfac6-5c52-46f7-8278-5e2210713be9" RecursiveFactorization = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseMatricesCSR = "a0a7dd2c-ebf4-11e9-1f05-cf50bc540ca1" Sparspak = "e56a9233-b9d6-4f03-8d0f-1825330902ac" blis_jll = "6136c539-28a5-5bf0-87cc-b183200dce32" @@ -1189,6 +1219,7 @@ version = "0.3.29" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" +version = "1.11.0" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] @@ -1207,14 +1238,10 @@ git-tree-sha1 = "1e0228a030642014fe5cfe68c2c0a818f9e3f522" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" version = "0.5.16" -[[deps.ManualMemory]] -git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" -uuid = "d125e4d3-2237-4719-b19c-fa641b8a4667" -version = "0.1.8" - [[deps.Markdown]] deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +version = "1.11.0" [[deps.MaybeInplace]] deps = ["ArrayInterface", "LinearAlgebra", "MacroTools"] @@ -1235,7 +1262,7 @@ version = "1.1.10" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+1" +version = "2.28.6+0" [[deps.Measures]] git-tree-sha1 = "b513cedd20d9c914783d8ad83d08120702bf2c77" @@ -1250,16 +1277,11 @@ version = "1.2.0" [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.Moshi]] -deps = ["ExproniconLite", "Jieko"] -git-tree-sha1 = "53f817d3e84537d84545e0ad749e483412dd6b2a" -uuid = "2e0e35c7-a2e4-4343-998d-7ef72827ed2d" -version = "0.3.7" +version = "1.11.0" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2023.1.10" +version = "2023.12.12" [[deps.MuladdMacro]] git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" @@ -1279,16 +1301,10 @@ uuid = "ffc61752-8dc7-55ee-8c37-f3e9cdd09e70" version = "1.0.21" [[deps.NBodySimulator]] -deps = ["DiffEqBase", "DiffEqCallbacks", "DocStringExtensions", "FileIO", "LinearAlgebra", "OrdinaryDiffEq", "Printf", "Random", "RecipesBase", "RecursiveArrayTools", "Reexport", "StaticArrays"] -git-tree-sha1 = "adddd35398fb6f3f6aa8cd45358e88383d30d785" +deps = ["ArrayInterface", "DiffEqBase", "DiffEqCallbacks", "DocStringExtensions", "FileIO", "JLArrays", "LinearAlgebra", "OrdinaryDiffEq", "OrdinaryDiffEqRKN", "OrdinaryDiffEqSymplecticRK", "PrecompileTools", "Printf", "Random", "RecipesBase", "RecursiveArrayTools", "Reexport", "StaticArrays"] +git-tree-sha1 = "e2b588cd8805995cbc1fed3bb6f93646141cec97" uuid = "0e6f8da7-a7fc-5c8b-a220-74e902c310f9" -version = "1.11.0" - -[[deps.NLSolversBase]] -deps = ["ADTypes", "DifferentiationInterface", "FiniteDiff", "LinearAlgebra"] -git-tree-sha1 = "b3f76b463c7998473062992b246045e6961a074e" -uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" -version = "8.0.0" +version = "1.12.0" [[deps.NaNMath]] deps = ["OpenLibm_jll"] @@ -1307,10 +1323,10 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.NonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SciMLLogging", "SimpleNonlinearSolve", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "d27bcf0cebf8786edcc2eaa4455c959e680334e7" +deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SciMLLogging", "Setfield", "SimpleNonlinearSolve", "StaticArraysCore", "SymbolicIndexingInterface"] +git-tree-sha1 = "ae0b0f875e4dfda538ab6977ec7939126ee9a1fe" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "4.16.0" +version = "4.19.0" [deps.NonlinearSolve.extensions] NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" @@ -1340,10 +1356,10 @@ version = "4.16.0" Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" [[deps.NonlinearSolveBase]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "LinearAlgebra", "LogExpFunctions", "Markdown", "MaybeInplace", "PreallocationTools", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "4f595a0977d6e048fa1e3c382b088b950f8c7934" +deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "LogExpFunctions", "Markdown", "MaybeInplace", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] +git-tree-sha1 = "a19a5df29ef2b197499fc631fa1a59385ae15262" uuid = "be0214bd-f91f-a760-ac4e-3421ce2b2da0" -version = "2.15.0" +version = "2.25.0" [deps.NonlinearSolveBase.extensions] NonlinearSolveBaseBandedMatricesExt = "BandedMatrices" @@ -1373,15 +1389,15 @@ version = "2.15.0" [[deps.NonlinearSolveFirstOrder]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConcreteStructs", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLJacobianOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "eea7cbe389b168c77df7ff779fb7277019c685c8" +git-tree-sha1 = "ce68820a4f421fb5bee7ec4dcf875aff33886bfb" uuid = "5959db7a-ea39-4486-b5fe-2dd0bf03d60d" -version = "2.0.0" +version = "2.1.1" [[deps.NonlinearSolveQuasiNewton]] deps = ["ArrayInterface", "CommonSolve", "ConcreteStructs", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLOperators", "StaticArraysCore"] -git-tree-sha1 = "ade27e8e9566b6cec63ee62f6a6650a11cf9a2eb" +git-tree-sha1 = "538432ca1aea8bf63db02929bf870501f8a7c64c" uuid = "9a2c21bd-3a47-402d-9113-8faf9a0ee114" -version = "1.12.0" +version = "1.13.1" weakdeps = ["ForwardDiff"] [deps.NonlinearSolveQuasiNewton.extensions] @@ -1389,9 +1405,9 @@ weakdeps = ["ForwardDiff"] [[deps.NonlinearSolveSpectralMethods]] deps = ["CommonSolve", "ConcreteStructs", "LineSearch", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "eafd027b5cd768f19bb5de76c0e908a9065ddd36" +git-tree-sha1 = "a3781e12becdf0ce5520bd97ec617e879bf4e9f2" uuid = "26075421-4e9a-44e1-8bd1-420ed7ad02b2" -version = "1.6.0" +version = "1.7.1" weakdeps = ["ForwardDiff"] [deps.NonlinearSolveSpectralMethods.extensions] @@ -1420,7 +1436,7 @@ version = "1.3.6+0" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.23+4" +version = "0.3.27+1" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] @@ -1429,9 +1445,9 @@ version = "0.8.5+0" [[deps.OpenSSH_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "OpenSSL_jll", "Zlib_jll"] -git-tree-sha1 = "301412a644646fdc0ad67d0a87487466b491e53d" +git-tree-sha1 = "57baa4b81a24c2910afbb6d853aa0685e4312bf7" uuid = "9bd350c2-7e96-507f-8002-3f2e150b4e1b" -version = "10.2.1+0" +version = "10.3.1+0" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "NetworkOptions", "OpenSSL_jll", "Sockets"] @@ -1441,9 +1457,9 @@ version = "1.6.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "c9cbeda6aceffc52d8a0017e71db27c7a7c0beaf" +git-tree-sha1 = "2ac022577e5eac7da040de17776d51bb770cd895" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.5.5+0" +version = "3.5.6+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -1463,28 +1479,22 @@ uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.8.1" [[deps.OrdinaryDiffEq]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FillArrays", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "MacroTools", "MuladdMacro", "NonlinearSolve", "OrdinaryDiffEqAdamsBashforthMoulton", "OrdinaryDiffEqBDF", "OrdinaryDiffEqCore", "OrdinaryDiffEqDefault", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqExplicitRK", "OrdinaryDiffEqExponentialRK", "OrdinaryDiffEqExtrapolation", "OrdinaryDiffEqFIRK", "OrdinaryDiffEqFeagin", "OrdinaryDiffEqFunctionMap", "OrdinaryDiffEqHighOrderRK", "OrdinaryDiffEqIMEXMultistep", "OrdinaryDiffEqLinear", "OrdinaryDiffEqLowOrderRK", "OrdinaryDiffEqLowStorageRK", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqNordsieck", "OrdinaryDiffEqPDIRK", "OrdinaryDiffEqPRK", "OrdinaryDiffEqQPRK", "OrdinaryDiffEqRKN", "OrdinaryDiffEqRosenbrock", "OrdinaryDiffEqSDIRK", "OrdinaryDiffEqSSPRK", "OrdinaryDiffEqStabilizedIRK", "OrdinaryDiffEqStabilizedRK", "OrdinaryDiffEqSymplecticRK", "OrdinaryDiffEqTsit5", "OrdinaryDiffEqVerner", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleNonlinearSolve", "SparseArrays", "Static", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "924e1db15095c7df6b844231c00c40d756a7553d" +deps = ["ADTypes", "CommonSolve", "DocStringExtensions", "OrdinaryDiffEqBDF", "OrdinaryDiffEqCore", "OrdinaryDiffEqDefault", "OrdinaryDiffEqRosenbrock", "OrdinaryDiffEqTsit5", "OrdinaryDiffEqVerner", "SciMLBase"] +git-tree-sha1 = "4c411ca0fa291015bc4c23058799a7280c4223e4" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.108.0" - -[[deps.OrdinaryDiffEqAdamsBashforthMoulton]] -deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqLowOrderRK", "Polyester", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static"] -git-tree-sha1 = "8307937159c3aeec5f19f4b661d82d96d25a3ff1" -uuid = "89bda076-bce5-4f1c-845f-551c83cdda9a" -version = "1.9.0" +version = "7.0.0" [[deps.OrdinaryDiffEqBDF]] -deps = ["ADTypes", "ArrayInterface", "DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqSDIRK", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "22b0c4f7939af140b7f7f4ce2cce90d9f72fa515" +deps = ["ADTypes", "ArrayInterface", "DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqSDIRK", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "2a193931b5dc2400f7f4fb7593b23e0aca96a581" uuid = "6ad6398a-0878-4a85-9266-38940aa047c8" -version = "1.22.0" +version = "2.0.0" [[deps.OrdinaryDiffEqCore]] -deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ConcreteStructs", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FillArrays", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "Polyester", "PrecompileTools", "Preferences", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Static", "StaticArrayInterface", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "622401a3c36ccbb0ab1639dc423bf1f4be494252" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ConcreteStructs", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "PrecompileTools", "Preferences", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "86c210d134f09139a294f0329006d6cc20275650" uuid = "bbf590c4-e513-4bbe-9b18-05decba2e5d8" -version = "3.17.1" +version = "4.0.0" [deps.OrdinaryDiffEqCore.extensions] OrdinaryDiffEqCoreMooncakeExt = "Mooncake" @@ -1496,169 +1506,66 @@ version = "3.17.1" [[deps.OrdinaryDiffEqDefault]] deps = ["ADTypes", "DiffEqBase", "EnumX", "LinearAlgebra", "LinearSolve", "OrdinaryDiffEqBDF", "OrdinaryDiffEqCore", "OrdinaryDiffEqRosenbrock", "OrdinaryDiffEqTsit5", "OrdinaryDiffEqVerner", "PrecompileTools", "Preferences", "Reexport", "SciMLBase"] -git-tree-sha1 = "0f40d969dd10d1b226c864bf7dc4b4b8933bc130" +git-tree-sha1 = "c2ad58656aff6d468109df04a246b018e92b21d8" uuid = "50262376-6c5a-4cf5-baba-aaf4f84d72d7" -version = "1.13.0" +version = "2.1.0" [[deps.OrdinaryDiffEqDifferentiation]] -deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "LinearAlgebra", "LinearSolve", "OrdinaryDiffEqCore", "SciMLBase", "SciMLOperators", "SparseMatrixColorings", "StaticArrayInterface", "StaticArrays"] -git-tree-sha1 = "c85968ea296acaff5de6ed0d9b64ddb00f4ea01f" +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "LinearAlgebra", "LinearSolve", "OrdinaryDiffEqCore", "SciMLBase", "SciMLOperators", "SparseMatrixColorings", "StaticArraysCore"] +git-tree-sha1 = "faf3fe4824557bc72aa126a845586f71d377a70a" uuid = "4302a76b-040a-498a-8c04-15b101fed76b" -version = "2.2.1" +version = "3.0.0" weakdeps = ["SparseArrays"] [deps.OrdinaryDiffEqDifferentiation.extensions] OrdinaryDiffEqDifferentiationSparseArraysExt = "SparseArrays" -[[deps.OrdinaryDiffEqExplicitRK]] -deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase", 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"SimpleNonlinearSolve", "SparseArrays", "StaticArrays"] -git-tree-sha1 = "a75727e93ffef0f0bc408372988f7bc0767b1781" +deps = ["ADTypes", "ArrayInterface", "DiffEqBase", "FastBroadcast", "FastClosures", "ForwardDiff", "LinearAlgebra", "LinearSolve", "MuladdMacro", "NonlinearSolve", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "PreallocationTools", "RecursiveArrayTools", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleNonlinearSolve", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "c3e92bdb7bf16385e6f7b505f78601a2708eff28" uuid = "127b3ac7-2247-4354-8eb6-78cf4e7c58e8" -version = "1.23.0" - -[[deps.OrdinaryDiffEqNordsieck]] -deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqTsit5", "Polyester", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static"] -git-tree-sha1 = "facea9aaf48eed5e9ba66d8b3246e51417c084d0" -uuid = "c9986a66-5c92-4813-8696-a7ec84c806c8" -version = "1.9.0" - -[[deps.OrdinaryDiffEqPDIRK]] 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"OrdinaryDiffEqCore", "Polyester", "RecursiveArrayTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "b086c6d1b4153c9ff4b3f184a9ba7829413cc502" +deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase"] +git-tree-sha1 = "e035f1fcd47f8f1e3881eb076b7b3abd326b70ee" uuid = "af6ede74-add8-4cfd-b1df-9a4dbb109d7a" -version = "1.10.0" +version = "2.0.0" [[deps.OrdinaryDiffEqRosenbrock]] -deps = ["ADTypes", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static"] -git-tree-sha1 = "f11347f3f01a5b00dae2b565e73795ee138cdc68" +deps = ["ADTypes", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqRosenbrockTableaus", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase"] +git-tree-sha1 = "803334224154e4a2a9d984547dd4449d3ca71c63" uuid = "43230ef6-c299-4910-a778-202eb28ce4ce" -version = "1.25.0" +version = "2.0.0" + +[[deps.OrdinaryDiffEqRosenbrockTableaus]] +git-tree-sha1 = "66acd57301ea9c79ff92b13b72135af258c141ab" +uuid = "b4bd8bb3-f80f-41d2-9b21-73a655b304b9" +version = "2.0.0" [[deps.OrdinaryDiffEqSDIRK]] -deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] -git-tree-sha1 = "0b766d820e3b948881f1f246899de9ef3d329224" +deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "8df990b85ea063a20df3f1b1dddab9d0afec985c" uuid = "2d112036-d095-4a1e-ab9a-08536f3ecdbf" -version = "1.12.0" - -[[deps.OrdinaryDiffEqSSPRK]] -deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static", "StaticArrays"] -git-tree-sha1 = "8abc61382a0c6469aa9c3bff2d61c9925a088320" -uuid = "669c94d9-1f4b-4b64-b377-1aa079aa2388" -version = "1.11.0" - -[[deps.OrdinaryDiffEqStabilizedIRK]] -deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqStabilizedRK", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays"] -git-tree-sha1 = "cf6856c731ddf9866e3e22612cce5e270f071545" -uuid = "e3e12d00-db14-5390-b879-ac3dd2ef6296" -version = "1.11.0" - -[[deps.OrdinaryDiffEqStabilizedRK]] -deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays"] -git-tree-sha1 = "d156a972fa7bc37bf8377d33a7d51d152e354d4c" -uuid = "358294b1-0aab-51c3-aafe-ad5ab194a2ad" -version = "1.8.0" +version = "2.0.0" [[deps.OrdinaryDiffEqSymplecticRK]] -deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "RecursiveArrayTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "9b783806fe2dc778649231cb3932cb71b63222d9" +deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase"] +git-tree-sha1 = "d9b4c0113394ab960dcb0c44d80bfd3bf4722a06" uuid = "fa646aed-7ef9-47eb-84c4-9443fc8cbfa8" -version = "1.11.0" +version = "2.0.0" [[deps.OrdinaryDiffEqTsit5]] -deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static", "TruncatedStacktraces"] -git-tree-sha1 = "8be4cba85586cd2efa6c76d1792c548758610901" +deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "d9cedcfa2cdae8859b4510b9d01ada9852cd6d9d" uuid = "b1df2697-797e-41e3-8120-5422d3b24e4a" -version = "1.9.0" +version = "2.0.0" [[deps.OrdinaryDiffEqVerner]] -deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static", "TruncatedStacktraces"] -git-tree-sha1 = "5ca5dbbfea89e14f283ce9fe2301c528ff4ec007" +deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "fb8ae6a290beed2ef61fa2e7571d921e1100c365" uuid = "79d7bb75-1356-48c1-b8c0-6832512096c2" -version = "1.11.0" +version = "2.0.0" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -1677,15 +1584,15 @@ weakdeps = ["StatsBase"] [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "0662b083e11420952f2e62e17eddae7fc07d5997" +git-tree-sha1 = "58e5ed5e386e156bd93e86b305ebd21ac63d2d04" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" -version = "1.57.0+0" +version = "1.57.1+0" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "7d2f8f21da5db6a806faf7b9b292296da42b2810" +git-tree-sha1 = "5d5e0a78e971354b1c7bff0655d11fdc1b0e12c8" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.3" +version = "2.8.4" [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] @@ -1694,9 +1601,13 @@ uuid = "30392449-352a-5448-841d-b1acce4e97dc" version = "0.44.2+0" [[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.10.0" +version = "1.11.0" +weakdeps = ["REPL"] + + [deps.Pkg.extensions] + REPLExt = "REPL" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1730,18 +1641,6 @@ version = "1.41.6" ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" -[[deps.Polyester]] -deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "16bbc30b5ebea91e9ce1671adc03de2832cff552" -uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.19" - -[[deps.PolyesterWeave]] -deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] -git-tree-sha1 = "645bed98cd47f72f67316fd42fc47dee771aefcd" -uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad" -version = "0.2.2" - [[deps.PooledArrays]] deps = ["DataAPI", "Future"] git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" @@ -1750,9 +1649,9 @@ version = "1.4.3" [[deps.PreallocationTools]] deps = ["Adapt", "ArrayInterface", "PrecompileTools"] -git-tree-sha1 = "dc8d6bde5005a0eac05ae8faf1eceaaca166cfa4" +git-tree-sha1 = "e16b73bf892c55d16d53c9c0dbd0fb31cb7e25da" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "1.1.2" +version = "1.2.0" [deps.PreallocationTools.extensions] PreallocationToolsForwardDiffExt = "ForwardDiff" @@ -1778,9 +1677,9 @@ version = "1.5.2" [[deps.PrettyTables]] deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "REPL", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "211530a7dc76ab59087f4d4d1fc3f086fbe87594" +git-tree-sha1 = "624de6279ab7d94fc9f672f0068107eb6619732c" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "3.2.3" +version = "3.3.2" [deps.PrettyTables.extensions] PrettyTablesTypstryExt = "Typstry" @@ -1797,10 +1696,11 @@ version = "0.5.7" [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" +version = "1.11.0" [[deps.Profile]] -deps = ["Printf"] uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79" +version = "1.11.0" [[deps.ProgressLogging]] deps = ["Logging", "SHA", "UUIDs"] @@ -1845,9 +1745,9 @@ version = "6.10.2+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9da16da70037ba9d701192e27befedefb91ec284" +git-tree-sha1 = "5e8e8b0ab68215d7a2b14b9921a946fee794749e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.11.2" +version = "2.11.3" [deps.QuadGK.extensions] QuadGKEnzymeExt = "Enzyme" @@ -1856,12 +1756,14 @@ version = "2.11.2" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" [[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" +version = "1.11.0" [[deps.Random]] deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +version = "1.11.0" [[deps.Ratios]] deps = ["Requires"] @@ -1887,16 +1789,19 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "LinearAlgebra", "PrecompileTools", "RecipesBase", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "18d2a6fd1ea9a8205cadb3a5704f8e51abdd748b" +git-tree-sha1 = "57b6fb3932fc8d1fc911f840d2c9de5fe3ba5008" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.48.0" +version = "4.3.0" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsCUDAExt = "CUDA" RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsFastBroadcastPolyesterExt = ["FastBroadcast", "Polyester"] RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsKernelAbstractionsExt = "KernelAbstractions" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsMooncakeExt = "Mooncake" RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] RecursiveArrayToolsStatisticsExt = "Statistics" @@ -1906,11 +1811,14 @@ version = "3.48.0" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" @@ -1950,24 +1858,19 @@ version = "0.5.1+0" [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "7257165d5477fd1025f7cb656019dcb6b0512c38" +git-tree-sha1 = "cfcdc949c4660544ab0fdeed169561cb22f835f4" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.17" +version = "0.5.18" [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" -[[deps.SIMDTypes]] -git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" -uuid = "94e857df-77ce-4151-89e5-788b33177be4" -version = "0.1.0" - [[deps.SciMLBase]] -deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Moshi", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "8787e28326c99b0c9c706b51da525ad09d03c56f" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "Random", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] +git-tree-sha1 = "450a8405f96d0a7c6caabed0852def06ba8c6bf1" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.149.0" +version = "3.7.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1975,7 +1878,6 @@ version = "2.149.0" SciMLBaseDistributionsExt = "Distributions" SciMLBaseEnzymeExt = "Enzyme" SciMLBaseForwardDiffExt = "ForwardDiff" - SciMLBaseMLStyleExt = "MLStyle" SciMLBaseMakieExt = "Makie" SciMLBaseMeasurementsExt = "Measurements" SciMLBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" @@ -1995,7 +1897,6 @@ version = "2.149.0" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - MLStyle = "d8e11817-5142-5d16-987a-aa16d5891078" Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" @@ -2016,9 +1917,9 @@ version = "0.1.3" [[deps.SciMLJacobianOperators]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DifferentiationInterface", "FastClosures", "LinearAlgebra", "SciMLBase", "SciMLOperators"] -git-tree-sha1 = "e96d5e96debf7f80a50d0b976a13dea556ccfd3a" +git-tree-sha1 = "7156a5b51cba1bea33a82a036939ead4131f92bc" uuid = "19f34311-ddf3-4b8b-af20-060888a46c0e" -version = "0.1.12" +version = "0.1.13" [[deps.SciMLLogging]] deps = ["Logging", "LoggingExtras", "Preferences"] @@ -2034,9 +1935,9 @@ version = "1.9.1" [[deps.SciMLOperators]] deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra"] -git-tree-sha1 = "794c760e6aafe9f40dcd7dd30526ea33f0adc8b7" +git-tree-sha1 = "0e34162268883db01c04f988895a80d0659071bb" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "1.15.1" +version = "1.17.0" weakdeps = ["SparseArrays", "StaticArraysCore"] [deps.SciMLOperators.extensions] @@ -2054,6 +1955,12 @@ git-tree-sha1 = "607f6867d0b0553e98fc7f725c9f9f13b4d01a32" uuid = "53ae85a6-f571-4167-b2af-e1d143709226" version = "1.10.0" +[[deps.ScopedValues]] +deps = ["HashArrayMappedTries", "Logging"] +git-tree-sha1 = "67a144433c4ce877ee6d1ada69a124d6b1ecf7be" +uuid = "7e506255-f358-4e82-b7e4-beb19740aa63" +version = "1.6.2" + [[deps.Scratch]] deps = ["Dates"] git-tree-sha1 = "9b81b8393e50b7d4e6d0a9f14e192294d3b7c109" @@ -2068,6 +1975,7 @@ version = "1.4.9" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" +version = "1.11.0" [[deps.Setfield]] deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] @@ -2078,6 +1986,7 @@ version = "1.1.2" [[deps.SharedArrays]] deps = ["Distributed", "Mmap", "Random", "Serialization"] uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" +version = "1.11.0" [[deps.Showoff]] deps = ["Dates", "Grisu"] @@ -2092,9 +2001,9 @@ version = "1.2.0" [[deps.SimpleNonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "744c3f0fb186ad28376199c1e72ca39d0c614b5d" +git-tree-sha1 = "d688de789b7e643326caf9a1051376dadbcd8873" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "2.11.0" +version = "2.11.1" [deps.SimpleNonlinearSolve.extensions] SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" @@ -2108,6 +2017,7 @@ version = "2.11.0" [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" +version = "1.11.0" [[deps.SortingAlgorithms]] deps = ["DataStructures"] @@ -2118,32 +2028,35 @@ version = "1.2.2" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -version = "1.10.0" +version = "1.11.0" [[deps.SparseMatrixColorings]] deps = ["ADTypes", "DocStringExtensions", "LinearAlgebra", "PrecompileTools", "Random", "SparseArrays"] -git-tree-sha1 = "7b2263c87aa890bf6d18ae05cedbe259754e3f34" +git-tree-sha1 = "f63d76c7b7c329cf11badd564fd8ba877b09c3fe" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.4.24" +version = "0.4.27" [deps.SparseMatrixColorings.extensions] - SparseMatrixColoringsCUDAExt = "CUDA" + SparseMatrixColoringsCUDAExt = ["CUDA", "cuSPARSE"] SparseMatrixColoringsCliqueTreesExt = "CliqueTrees" SparseMatrixColoringsColorsExt = "Colors" + SparseMatrixColoringsGPUArraysExt = "GPUArrays" SparseMatrixColoringsJuMPExt = ["JuMP", "MathOptInterface"] [deps.SparseMatrixColorings.weakdeps] CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" + GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" JuMP = "4076af6c-e467-56ae-b986-b466b2749572" MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" + cuSPARSE = "b26da814-b3bc-49ef-b0ee-c816305aa060" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "5acc6a41b3082920f79ca3c759acbcecf18a8d78" +git-tree-sha1 = "2700b235561b0335d5bef7097a111dc513b8655e" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.7.1" +version = "2.7.2" weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] @@ -2155,23 +2068,6 @@ git-tree-sha1 = "4f96c596b8c8258cc7d3b19797854d368f243ddc" uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" version = "1.0.4" -[[deps.Static]] -deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools", "SciMLPublic"] -git-tree-sha1 = "49440414711eddc7227724ae6e570c7d5559a086" -uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.3.1" - -[[deps.StaticArrayInterface]] -deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "SciMLPublic", "Static"] -git-tree-sha1 = "aa1ea41b3d45ac449d10477f65e2b40e3197a0d2" -uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.9.0" -weakdeps = ["OffsetArrays", "StaticArrays"] - - [deps.StaticArrayInterface.extensions] - StaticArrayInterfaceOffsetArraysExt = "OffsetArrays" - StaticArrayInterfaceStaticArraysExt = "StaticArrays" - [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] git-tree-sha1 = "246a8bb2e6667f832eea063c3a56aef96429a3db" @@ -2189,9 +2085,14 @@ uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" version = "1.4.4" [[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] +deps = ["LinearAlgebra"] +git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.10.0" +version = "1.11.1" +weakdeps = ["SparseArrays"] + + [deps.Statistics.extensions] + SparseArraysExt = ["SparseArrays"] [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -2222,12 +2123,6 @@ git-tree-sha1 = "88cf3587711d9ad0a55722d339a013c4c56c5bbc" uuid = "f3b207a7-027a-5e70-b257-86293d7955fd" version = "0.15.8" -[[deps.StrideArraysCore]] -deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "83151ba8065a73f53ca2ae98bc7274d817aa30f2" -uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.5.8" - [[deps.StringEncodings]] deps = ["Libiconv_jll"] git-tree-sha1 = "b765e46ba27ecf6b44faf70df40c57aa3a547dcb" @@ -2240,6 +2135,10 @@ git-tree-sha1 = "d05693d339e37d6ab134c5ab53c29fce5ee5d7d5" uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.4.4" +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" + [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" @@ -2247,7 +2146,7 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "7.2.1+1" +version = "7.7.0+0" [[deps.SymbolicIndexingInterface]] deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] @@ -2296,12 +2195,7 @@ version = "0.1.1" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.ThreadingUtilities]] -deps = ["ManualMemory"] -git-tree-sha1 = "d969183d3d244b6c33796b5ed01ab97328f2db85" -uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" -version = "0.5.5" +version = "1.11.0" [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] @@ -2334,9 +2228,11 @@ version = "1.6.1" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +version = "1.11.0" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +version = "1.11.0" [[deps.UnicodeFun]] deps = ["REPL"] @@ -2344,6 +2240,15 @@ git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" version = "0.4.1" +[[deps.UnsafeAtomics]] +git-tree-sha1 = "0f30765c32d66d58e41f4cb5624d4fc8a82ec13b" +uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" +version = "0.3.1" +weakdeps = ["LLVM"] + + [deps.UnsafeAtomics.extensions] + UnsafeAtomicsLLVM = ["LLVM"] + [[deps.Unzip]] git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" @@ -2386,9 +2291,9 @@ version = "1.1.0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "9cce64c0fdd1960b597ba7ecda2950b5ed957438" +git-tree-sha1 = "b29c22e245d092b8b4e8d3c09ad7baa586d9f573" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.8.2+0" +version = "5.8.3+0" [[deps.Xorg_libICE_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2462,6 +2367,12 @@ git-tree-sha1 = "7ed9347888fac59a618302ee38216dd0379c480d" uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" version = "0.9.12+0" +[[deps.Xorg_libpciaccess_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "58972370b81423fc546c56a60ed1a009450177c3" +uuid = "a65dc6b1-eb27-53a1-bb3e-dea574b5389e" +version = "0.19.0+0" + [[deps.Xorg_libxcb_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXau_jll", "Xorg_libXdmcp_jll"] git-tree-sha1 = "bfcaf7ec088eaba362093393fe11aa141fa15422" @@ -2518,9 +2429,9 @@ version = "1.4.7+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "00af7ebdc563c9217ecc67776d1bbf037dbcebf4" +git-tree-sha1 = "429722587208f02b1cecbddcd20133df2f1ed796" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.44.0+0" +version = "2.47.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2571,9 +2482,9 @@ version = "0.61.1+0" [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" +git-tree-sha1 = "850b06095ee71f0135d644ffd8a52850699581ed" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.13.1+0" +version = "3.13.3+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] @@ -2592,6 +2503,12 @@ git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" version = "0.2.2+0" +[[deps.libdrm_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libpciaccess_jll"] +git-tree-sha1 = "63aac0bcb0b582e11bad965cef4a689905456c03" +uuid = "8e53e030-5e6c-5a89-a30b-be5b7263a166" +version = "2.4.125+1" + [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "56d643b57b188d30cccc25e331d416d3d358e557" @@ -2612,9 +2529,9 @@ version = "1.28.1+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" +git-tree-sha1 = "e51150d5ab85cee6fc36726850f0e627ad2e4aba" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.55+0" +version = "1.6.58+0" [[deps.libsodium_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2622,6 +2539,12 @@ git-tree-sha1 = "011b0a7331b41c25524b64dc42afc9683ee89026" uuid = "a9144af2-ca23-56d9-984f-0d03f7b5ccf8" version = "1.0.21+0" +[[deps.libva_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll", "Xorg_libXext_jll", "Xorg_libXfixes_jll", "libdrm_jll"] +git-tree-sha1 = "7dbf96baae3310fe2fa0df0ccbb3c6288d5816c9" +uuid = "9a156e7d-b971-5f62-b2c9-67348b8fb97c" +version = "2.23.0+0" + [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5" @@ -2637,7 +2560,7 @@ version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.52.0+1" +version = "1.59.0+0" [[deps.oneTBB_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] diff --git a/benchmarks/NBodySimulator/Project.toml b/benchmarks/NBodySimulator/Project.toml index 28561478a..53f4f18ec 100644 --- a/benchmarks/NBodySimulator/Project.toml +++ b/benchmarks/NBodySimulator/Project.toml @@ -13,7 +13,7 @@ StatsPlots = "f3b207a7-027a-5e70-b257-86293d7955fd" BenchmarkTools = "1.0" DataFrames = "1.0" NBodySimulator = "1.3" -OrdinaryDiffEq = "6" +OrdinaryDiffEq = "7" Plots = "1.5" ProgressLogging = "0.1" SciMLBenchmarks = "0.1" diff --git a/benchmarks/NeuralNetworks/Manifest.toml b/benchmarks/NeuralNetworks/Manifest.toml index 1aeb1b717..13cd82392 100644 --- a/benchmarks/NeuralNetworks/Manifest.toml +++ b/benchmarks/NeuralNetworks/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.12.4" +julia_version = "1.11.9" manifest_format = "2.0" -project_hash = "7bb76e86a8e4ea4674ff1a555c92935e8f524eac" +project_hash = "30a9447b519f11b305b5ec7a2286032598b50d10" [[deps.ADTypes]] -git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" +git-tree-sha1 = "bbc22a9a08a0ef6460041086d8a7b27940ed4ffd" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.21.0" +version = "1.22.0" weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] [deps.ADTypes.extensions] @@ -57,9 +57,9 @@ version = "0.1.44" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "35ea197a51ce46fcd01c4a44befce0578a1aaeca" +git-tree-sha1 = "0761717147821d696c9470a7a86364b2fbd22fd8" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.5.0" +version = "4.5.2" weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] @@ -94,9 +94,9 @@ version = "1.1.2" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "78b3a7a536b4b0a747a0f296ea77091ca0a9f9a3" +git-tree-sha1 = "54f895554d05c83e3dd59f6a396671dae8999573" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.23.0" +version = "7.24.0" [deps.ArrayInterface.extensions] ArrayInterfaceAMDGPUExt = "AMDGPU" @@ -168,6 +168,12 @@ git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" version = "0.4.8" +[[deps.BFloat16s]] +deps = ["LinearAlgebra", "Printf", "Random"] +git-tree-sha1 = "e386db8b4753b42caac75ac81d0a4fe161a68a97" +uuid = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" +version = "0.6.1" + [[deps.BangBang]] deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] git-tree-sha1 = "cceb62468025be98d42a5dc581b163c20896b040" @@ -205,10 +211,10 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.BenchmarkTools]] -deps = ["Compat", "JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"] -git-tree-sha1 = "7fecfb1123b8d0232218e2da0c213004ff15358d" +deps = ["Compat", "JSON", "Logging", "PrecompileTools", "Printf", "Profile", "Statistics", "UUIDs"] +git-tree-sha1 = "9670d3febc2b6da60a0ae57846ba74670290653f" uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" -version = "1.6.3" +version = "1.8.0" [[deps.BitFlags]] git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" @@ -272,10 +278,10 @@ uuid = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0" version = "0.13.10" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d0efe2c6fdcdaa1c161d206aa8b933788397ec71" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.5+1" +version = "1.18.6+0" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] @@ -285,9 +291,9 @@ version = "1.73.0" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" +git-tree-sha1 = "12177ad6b3cad7fd50c8b3825ce24a99ad61c18f" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.26.0" +version = "1.26.1" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] @@ -305,6 +311,12 @@ git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" version = "0.7.8" +[[deps.CodecZstd]] +deps = ["TranscodingStreams", "Zstd_jll"] +git-tree-sha1 = "da54a6cd93c54950c15adf1d336cfd7d71f51a56" +uuid = "6b39b394-51ab-5f42-8807-6242bab2b4c2" +version = "0.8.7" + [[deps.ColorBrewer]] deps = ["Colors", "JSON"] git-tree-sha1 = "07da79661b919001e6863b81fc572497daa58349" @@ -367,7 +379,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.3.0+1" +version = "1.1.1+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -417,6 +429,18 @@ git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" version = "0.6.3" +[[deps.CoreMath]] +deps = ["CoreMath_jll"] +git-tree-sha1 = "8c0480f92b1b1796239156a1b9b1bfb1b39499b4" +uuid = "b7a15901-be09-4a0e-87d2-2e66b0e09b5a" +version = "0.1.0" + +[[deps.CoreMath_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a692a4c1dc59a4b8bc0b6403876eb3250fde2bc3" +uuid = "a38c48d9-6df1-5ac9-9223-b6ada3b5572b" +version = "0.1.0+0" + [[deps.CpuId]] deps = ["Markdown"] git-tree-sha1 = "fcbb72b032692610bfbdb15018ac16a36cf2e406" @@ -435,9 +459,9 @@ version = "1.16.0" [[deps.DataStructures]] deps = ["OrderedCollections"] -git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" +git-tree-sha1 = "e86f4a2805f7f19bec5129bc9150c38208e5dc23" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.19.3" +version = "0.19.4" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -496,9 +520,9 @@ version = "1.11.0" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" +git-tree-sha1 = "e421c1938fafab0165b04dc1a9dbe2a26272952c" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.123" +version = "0.25.125" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -518,7 +542,7 @@ version = "0.9.5" [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.7.0" +version = "1.6.0" [[deps.EarCut_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -533,9 +557,10 @@ version = "1.0.7" [[deps.Enzyme]] deps = ["CEnum", "EnzymeCore", "Enzyme_jll", "GPUCompiler", "InteractiveUtils", "LLVM", "Libdl", "LinearAlgebra", "ObjectFile", "PrecompileTools", "Preferences", "Printf", "Random", "SparseArrays"] -git-tree-sha1 = "3b8ff73a9885aaea237bc262bd5fc798b5fd866f" +git-tree-sha1 = "78704dd8d84c93a7f2ac5af0bbb95d26763ec9b9" uuid = "7da242da-08ed-463a-9acd-ee780be4f1d9" -version = "0.13.134" +version = "0.13.140" +weakdeps = ["ADTypes", "BFloat16s", "ChainRulesCore", "GPUArraysCore", "LogExpFunctions", "SpecialFunctions", "StaticArrays"] [deps.Enzyme.extensions] EnzymeBFloat16sExt = "BFloat16s" @@ -545,19 +570,10 @@ version = "0.13.134" EnzymeSpecialFunctionsExt = "SpecialFunctions" EnzymeStaticArraysExt = "StaticArrays" - [deps.Enzyme.weakdeps] - ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" - BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" - LogExpFunctions = "2ab3a3ac-af41-5b50-aa03-7779005ae688" - SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - [[deps.EnzymeCore]] -git-tree-sha1 = "990991b8aa76d17693a98e3a915ac7aa49f08d1a" +git-tree-sha1 = "c6ee69ee502060982d12dbaaf3d8fcb4e835a0d1" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.8.18" +version = "0.8.20" weakdeps = ["Adapt", "ChainRulesCore"] [deps.EnzymeCore.extensions] @@ -566,9 +582,9 @@ weakdeps = ["Adapt", "ChainRulesCore"] [[deps.Enzyme_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "4c22000e08aaa862526d9a41cfb7003e4002e653" +git-tree-sha1 = "d3ad8f5eca369ac8803ff7db660028d47debc75d" uuid = "7cc45869-7501-5eee-bdea-0790c847d4ef" -version = "0.0.256+0" +version = "0.0.258+0" [[deps.ExactPredicates]] deps = ["IntervalArithmetic", "Random", "StaticArrays"] @@ -584,9 +600,9 @@ version = "0.1.11" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "27af30de8b5445644e8ffe3bcb0d72049c089cf1" +git-tree-sha1 = "8f05e9a2e7c2e3eb524102bb2926c5743c07fbe1" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.7.3+0" +version = "2.8.0+0" [[deps.ExprTools]] git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" @@ -634,9 +650,9 @@ version = "0.3.2" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "6522cfb3b8fe97bec632252263057996cbd3de20" +git-tree-sha1 = "8e9c059d6857607253e837730dbf780b6b151acd" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.18.0" +version = "1.19.0" weakdeps = ["HTTP"] [deps.FileIO.extensions] @@ -683,10 +699,10 @@ uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" version = "0.8.5" [[deps.Flux]] -deps = ["ADTypes", "Adapt", "ChainRulesCore", "Compat", "EnzymeCore", "Functors", "LinearAlgebra", "MLCore", "MLDataDevices", "MLUtils", "MacroTools", "NNlib", "OneHotArrays", "Optimisers", "Preferences", "ProgressLogging", "Random", "Reexport", "Setfield", "SparseArrays", "SpecialFunctions", "Statistics", "Zygote"] -git-tree-sha1 = "ea6715b3d7a95a07a62109df1c9ede2641a50706" +deps = ["ADTypes", "Adapt", "ChainRulesCore", "Compat", "EnzymeCore", "Functors", "GPUArrays", "LinearAlgebra", "MLCore", "MLDataDevices", "MLUtils", "MacroTools", "NNlib", "OneHotArrays", "Optimisers", "Preferences", "ProgressLogging", "Random", "Reexport", "Setfield", "SparseArrays", "SpecialFunctions", "Statistics", "Zygote"] +git-tree-sha1 = "cb318a415a089c337d0c15000d1608cee8434ebf" uuid = "587475ba-b771-5e3f-ad9e-33799f191a9c" -version = "0.16.9" +version = "0.16.10" [deps.Flux.extensions] FluxAMDGPUExt = "AMDGPU" @@ -764,6 +780,18 @@ deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" version = "1.11.0" +[[deps.GPUArrays]] +deps = ["Adapt", "GPUArraysCore", "KernelAbstractions", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "ScopedValues", "Serialization", "SparseArrays", "Statistics"] +git-tree-sha1 = "34fd745547978beb471f029f447290ef4dbc7bbd" +uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" +version = "11.5.3" + + [deps.GPUArrays.extensions] + JLD2Ext = "JLD2" + + [deps.GPUArrays.weakdeps] + JLD2 = "033835bb-8acc-5ee8-8aae-3f567f8a3819" + [[deps.GPUArraysCore]] deps = ["Adapt"] git-tree-sha1 = "83cf05ab16a73219e5f6bd1bdfa9848fa24ac627" @@ -772,9 +800,9 @@ version = "0.2.0" [[deps.GPUCompiler]] deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "PrecompileTools", "Preferences", "Scratch", "Serialization", "TOML", "Tracy", "UUIDs"] -git-tree-sha1 = "966946d226e8b676ca6409454718accb18c34c54" +git-tree-sha1 = "fedfe5e7db7035271c3f58359007f971da1dde87" uuid = "61eb1bfa-7361-4325-ad38-22787b887f55" -version = "1.8.2" +version = "1.9.1" [[deps.GeometryBasics]] deps = ["EarCut_jll", "Extents", "IterTools", "LinearAlgebra", "PrecompileTools", "Random", "StaticArrays"] @@ -941,16 +969,17 @@ weakdeps = ["Unitful"] InterpolationsUnitfulExt = "Unitful" [[deps.IntervalArithmetic]] -deps = ["CRlibm", "MacroTools", "OpenBLASConsistentFPCSR_jll", "Printf", "Random", "RoundingEmulator"] -git-tree-sha1 = "2cce1fed119ca7b6cc230c4a3b85202478af7924" +deps = ["CRlibm", "CoreMath", "MacroTools", "OpenBLASConsistentFPCSR_jll", "Printf", "Random", "RoundingEmulator"] +git-tree-sha1 = "3e6273749a2df3a5c9067657510ad01ba5039a92" uuid = "d1acc4aa-44c8-5952-acd4-ba5d80a2a253" -version = "1.0.3" +version = "1.0.8" [deps.IntervalArithmetic.extensions] IntervalArithmeticArblibExt = "Arblib" IntervalArithmeticDiffRulesExt = "DiffRules" IntervalArithmeticForwardDiffExt = "ForwardDiff" IntervalArithmeticIntervalSetsExt = "IntervalSets" + IntervalArithmeticIrrationalConstantsExt = "IrrationalConstants" IntervalArithmeticLinearAlgebraExt = "LinearAlgebra" IntervalArithmeticRecipesBaseExt = "RecipesBase" IntervalArithmeticSparseArraysExt = "SparseArrays" @@ -960,14 +989,15 @@ version = "1.0.3" DiffRules = "b552c78f-8df3-52c6-915a-8e097449b14b" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + IrrationalConstants = "92d709cd-6900-40b7-9082-c6be49f344b6" LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[deps.IntervalSets]] -git-tree-sha1 = "d966f85b3b7a8e49d034d27a189e9a4874b4391a" +git-tree-sha1 = "79d6bd28c8d9bccc2229784f1bd637689b256377" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.13" +version = "0.7.14" [deps.IntervalSets.extensions] IntervalSetsRandomExt = "Random" @@ -1018,9 +1048,9 @@ version = "1.7.1" [[deps.JSON]] deps = ["Dates", "Logging", "Parsers", "PrecompileTools", "StructUtils", "UUIDs", "Unicode"] -git-tree-sha1 = "b3ad4a0255688dcb895a52fafbaae3023b588a90" +git-tree-sha1 = "fe23330af47b8ab4e135b2ff65f7398c3a2bfc65" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "1.4.0" +version = "1.5.2" [deps.JSON.extensions] JSONArrowExt = ["ArrowTypes"] @@ -1036,14 +1066,9 @@ version = "0.1.6" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "b6893345fd6658c8e475d40155789f4860ac3b21" +git-tree-sha1 = "c0c9b76f3520863909825cbecdef58cd63de705a" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.1.4+0" - -[[deps.JuliaSyntaxHighlighting]] -deps = ["StyledStrings"] -uuid = "ac6e5ff7-fb65-4e79-a425-ec3bc9c03011" -version = "1.12.0" +version = "3.1.5+0" [[deps.JuliaVariables]] deps = ["MLStyle", "NameResolution"] @@ -1077,27 +1102,25 @@ version = "3.100.3+0" [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "aaafe88dccbd957a8d82f7d05be9b69172e0cee3" +git-tree-sha1 = "17b94ecafcfa45e8360a4fc9ca6b583b049e4e37" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "4.0.1+0" +version = "4.1.0+0" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Unicode"] -git-tree-sha1 = "69e4739502b7ab5176117e97e1664ed181c35036" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "PrecompileTools", "Preferences", "Printf", "Unicode"] +git-tree-sha1 = "85592339c4363f40863f0b61f9cba80b885070c3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "9.4.6" +version = "9.7.1" +weakdeps = ["BFloat16s"] [deps.LLVM.extensions] BFloat16sExt = "BFloat16s" - [deps.LLVM.weakdeps] - BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" - [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "8e76807afb59ebb833e9b131ebf1a8c006510f33" +git-tree-sha1 = "f1d1adfff151fd02b4062d1af82df02052dc4a0c" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.38+0" +version = "0.0.42+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1105,12 +1128,6 @@ git-tree-sha1 = "eb62a3deb62fc6d8822c0c4bef73e4412419c5d8" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" version = "18.1.8+0" -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "1c602b1127f4751facb671441ca72715cc95938a" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.3+0" - [[deps.LaTeXStrings]] git-tree-sha1 = "dda21b8cbd6a6c40d9d02a73230f9d70fed6918c" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" @@ -1138,24 +1155,24 @@ uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" version = "0.6.4" [[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "OpenSSL_jll", "Zlib_jll", "nghttp2_jll"] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.15.0+0" +version = "8.6.0+0" [[deps.LibGit2]] -deps = ["LibGit2_jll", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" version = "1.11.0" [[deps.LibGit2_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "OpenSSL_jll"] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.9.0+0" +version = "1.7.2+0" [[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "OpenSSL_jll"] +deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.11.3+1" +version = "1.11.0+1" [[deps.LibTracyClient_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1187,9 +1204,9 @@ version = "1.18.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "97bbca976196f2a1eb9607131cb108c69ec3f8a6" +git-tree-sha1 = "cc3ad4faf30015a3e8094c9b5b7f19e85bdf2386" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] @@ -1199,14 +1216,14 @@ version = "4.7.2+0" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d0205286d9eceadc518742860bf23f703779a3d6" +git-tree-sha1 = "d620582b1f0cbe2c72dd1d5bd195a9ce73370ab1" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" -version = "1.12.0" +version = "1.11.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] @@ -1248,9 +1265,9 @@ weakdeps = ["ChainRulesCore", "ForwardDiff", "NNlib", "SpecialFunctions"] [[deps.Lux]] deps = ["ADTypes", "Adapt", "ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DiffResults", "DispatchDoctor", "EnzymeCore", "FastClosures", "ForwardDiff", "Functors", "GPUArraysCore", "LinearAlgebra", "LuxCore", "LuxLib", "MLDataDevices", "MacroTools", "Markdown", "NNlib", "Optimisers", "PrecompileTools", "Preferences", "Random", "ReactantCore", "Reexport", "SciMLPublic", "Setfield", "Static", "StaticArraysCore", "Statistics", "UUIDs", "WeightInitializers"] -git-tree-sha1 = "334de475ff414c8eb67f88f57f7b02d40cd8f320" +git-tree-sha1 = "b7654d9b1144792d7fa165add2e07434329e3193" uuid = "b2108857-7c20-44ae-9111-449ecde12c47" -version = "1.31.3" +version = "1.31.4" [deps.Lux.extensions] ComponentArraysExt = "ComponentArrays" @@ -1318,9 +1335,9 @@ version = "1.5.3" [[deps.LuxLib]] deps = ["ArrayInterface", "CPUSummary", "ChainRulesCore", "DispatchDoctor", "EnzymeCore", "FastClosures", "Functors", "KernelAbstractions", "LinearAlgebra", "LuxCore", "MLDataDevices", "Markdown", "NNlib", "Preferences", "Random", "Reexport", "SciMLPublic", "Static", "StaticArraysCore", "Statistics", "UUIDs"] -git-tree-sha1 = "0d4e3527f0dfe4163443bc67f6c80881a45fb70a" +git-tree-sha1 = "6a6453d556f7bc3870d797657636b1ad5f45fd27" uuid = "82251201-b29d-42c6-8e01-566dec8acb11" -version = "1.15.5" +version = "1.15.9" [deps.LuxLib.extensions] AppleAccelerateExt = "AppleAccelerate" @@ -1367,9 +1384,9 @@ version = "1.0.0" [[deps.MLDataDevices]] deps = ["Adapt", "Functors", "Preferences", "Random", "SciMLPublic"] -git-tree-sha1 = "39a69ca451c3e78b9a6a2e42ef894fdf7505e629" +git-tree-sha1 = "29b00f22be6fd821a214760f0224329f21998a05" uuid = "7e8f7934-dd98-4c1a-8fe8-92b47a384d40" -version = "1.17.5" +version = "1.17.10" [deps.MLDataDevices.extensions] AMDGPUExt = "AMDGPU" @@ -1452,7 +1469,7 @@ uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" version = "0.4.3" [[deps.Markdown]] -deps = ["Base64", "JuliaSyntaxHighlighting", "StyledStrings"] +deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" version = "1.11.0" @@ -1469,10 +1486,9 @@ uuid = "739be429-bea8-5141-9913-cc70e7f3736d" version = "1.1.10" [[deps.MbedTLS_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "ff69a2b1330bcb730b9ac1ab7dd680176f5896b8" +deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.1010+0" +version = "2.28.6+0" [[deps.MicroCollections]] deps = ["Accessors", "BangBang", "InitialValues"] @@ -1504,7 +1520,7 @@ version = "0.3.4" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2025.11.4" +version = "2023.12.12" [[deps.MuladdMacro]] git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" @@ -1513,9 +1529,9 @@ version = "0.2.4" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Random", "ScopedValues", "Statistics"] -git-tree-sha1 = "6dc9ffc3a9931e6b988f913b49630d0fb986d0a8" +git-tree-sha1 = "78cd28dbd5f03f99ccaba45c987107adcb61c115" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.33" +version = "0.9.34" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1557,7 +1573,7 @@ version = "1.1.1" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.3.0" +version = "1.2.0" [[deps.ObjectFile]] deps = ["Reexport", "StructIO"] @@ -1587,20 +1603,20 @@ version = "1.3.6+0" [[deps.OneHotArrays]] deps = ["Adapt", "ChainRulesCore", "Compat", "GPUArraysCore", "LinearAlgebra", "NNlib"] -git-tree-sha1 = "bfe8e84c71972f77e775f75e6d8048ad3fdbe8bc" +git-tree-sha1 = "9510d7008275fc5b33fc72a73f8fddef0b5430c6" uuid = "0b1bfda6-eb8a-41d2-88d8-f5af5cad476f" -version = "0.2.10" +version = "0.2.11" [[deps.OpenBLASConsistentFPCSR_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f2b3b9e52a5eb6a3434c8cca67ad2dde011194f4" +git-tree-sha1 = "3287ec88df50429a934ebc6cf14606215e27b987" uuid = "6cdc7f73-28fd-5e50-80fb-958a8875b1af" -version = "0.3.30+0" +version = "0.3.33+0" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.29+0" +version = "0.3.27+1" [[deps.OpenEXR]] deps = ["Colors", "FileIO", "OpenEXR_jll"] @@ -1610,14 +1626,14 @@ version = "0.3.3" [[deps.OpenEXR_jll]] deps = ["Artifacts", "Imath_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "df9b7c88c2e7a2e77146223c526bf9e236d5f450" +git-tree-sha1 = "9ac7c730c53b3b5d9a73fb900ac4b4fc263774db" uuid = "18a262bb-aa17-5467-a713-aee519bc75cb" -version = "3.4.4+0" +version = "3.4.9+0" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.7+0" +version = "0.8.5+0" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "NetworkOptions", "OpenSSL_jll", "Sockets"] @@ -1626,9 +1642,10 @@ uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" version = "1.6.1" [[deps.OpenSSL_jll]] -deps = ["Artifacts", "Libdl"] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "2ac022577e5eac7da040de17776d51bb770cd895" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.5.4+0" +version = "3.5.6+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -1662,7 +1679,7 @@ version = "1.8.1" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.44.0+1" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] @@ -1694,15 +1711,15 @@ version = "0.5.12" [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "0662b083e11420952f2e62e17eddae7fc07d5997" +git-tree-sha1 = "58e5ed5e386e156bd93e86b305ebd21ac63d2d04" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" -version = "1.57.0+0" +version = "1.57.1+0" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "7d2f8f21da5db6a806faf7b9b292296da42b2810" +git-tree-sha1 = "5d5e0a78e971354b1c7bff0655d11fdc1b0e12c8" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.3" +version = "2.8.4" [[deps.Pidfile]] deps = ["FileWatching", "Test"] @@ -1719,7 +1736,7 @@ version = "0.44.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.12.1" +version = "1.11.0" weakdeps = ["REPL"] [deps.Pkg.extensions] @@ -1756,9 +1773,9 @@ version = "0.1.2" [[deps.PrecompileTools]] deps = ["Preferences"] -git-tree-sha1 = "07a921781cab75691315adc645096ed5e370cb77" +git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.3.3" +version = "1.2.1" [[deps.Preferences]] deps = ["TOML"] @@ -1795,7 +1812,6 @@ uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" version = "1.11.0" [[deps.Profile]] -deps = ["StyledStrings"] uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79" version = "1.11.0" @@ -1844,16 +1860,16 @@ version = "1.0.2" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9da16da70037ba9d701192e27befedefb91ec284" +git-tree-sha1 = "5e8e8b0ab68215d7a2b14b9921a946fee794749e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.11.2" +version = "2.11.3" weakdeps = ["Enzyme"] [deps.QuadGK.extensions] QuadGKEnzymeExt = "Enzyme" [[deps.REPL]] -deps = ["InteractiveUtils", "JuliaSyntaxHighlighting", "Markdown", "Sockets", "StyledStrings", "Unicode"] +deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" version = "1.11.0" @@ -1878,16 +1894,17 @@ weakdeps = ["FixedPointNumbers"] RatiosFixedPointNumbersExt = "FixedPointNumbers" [[deps.Reactant]] -deps = ["Adapt", "CEnum", "Crayons", "Downloads", "EnumX", "Enzyme", "EnzymeCore", "Functors", "GPUArraysCore", "GPUCompiler", "HTTP", "JSON", "LLVM", "LLVMOpenMP_jll", "Libdl", "LinearAlgebra", "OrderedCollections", "PrecompileTools", "Preferences", "PrettyTables", "ProtoBuf", "Random", "ReactantCore", "Reactant_jll", "ScopedValues", "Scratch", "Serialization", "Setfield", "Sockets", "StableRNGs", "StructUtils", "StyledStrings", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "94c849a5f821f107c74aa19952bd3e9de8ebd341" +deps = ["Adapt", "BFloat16s", "CEnum", "Crayons", "Downloads", "EnumX", "Enzyme", "EnzymeCore", "FileWatching", "Functors", "GPUArraysCore", "GPUCompiler", "HTTP", "JSON", "LLVM", "LLVMOpenMP_jll", "Libdl", "LinearAlgebra", "OrderedCollections", "PrecompileTools", "Preferences", "PrettyTables", "ProtoBuf", "Random", "ReactantCore", "Reactant_jll", "ScopedValues", "Scratch", "Serialization", "Setfield", "Sockets", "StableRNGs", "StructUtils", "StyledStrings", "UUIDs", "p7zip_jll"] +git-tree-sha1 = "e02293894a505abfc68ef5e0743d6035d411c64f" uuid = "3c362404-f566-11ee-1572-e11a4b42c853" -version = "0.2.240" +version = "0.2.254" [deps.Reactant.extensions] ReactantAbstractFFTsExt = "AbstractFFTs" ReactantArrayInterfaceExt = "ArrayInterface" - ReactantCUDAExt = ["CUDA", "Enzyme", "GPUCompiler", "KernelAbstractions", "LLVM"] + ReactantCUDAExt = ["CUDA", "Enzyme", "GPUCompiler", "KernelAbstractions", "LLVM", "Printf"] ReactantDLFP8TypesExt = "DLFP8Types" + ReactantDatesExt = "Dates" ReactantFFTWExt = ["FFTW", "AbstractFFTs", "LinearAlgebra"] ReactantFillArraysExt = "FillArrays" ReactantFloat8sExt = "Float8s" @@ -1903,6 +1920,7 @@ version = "0.2.240" ReactantRandom123Ext = "Random123" ReactantSparseArraysExt = "SparseArrays" ReactantSpecialFunctionsExt = "SpecialFunctions" + ReactantStaticArraysExt = "StaticArrays" ReactantStatisticsExt = "Statistics" ReactantStructArraysExt = "StructArrays" ReactantYaoBlocksExt = "YaoBlocks" @@ -1913,6 +1931,7 @@ version = "0.2.240" ArrayInterface = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" DLFP8Types = "f4c16678-4a16-415b-82ef-ed337c5d6c7c" + Dates = "ade2ca70-3891-5945-98fb-dc099432e06a" FFTW = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" Float8s = "81dfefd7-55b0-40c6-a251-db853704e186" @@ -1925,10 +1944,12 @@ version = "0.2.240" NPZ = "15e1cf62-19b3-5cfa-8e77-841668bca605" OffsetArrays = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" OneHotArrays = "0b1bfda6-eb8a-41d2-88d8-f5af5cad476f" + Printf = "de0858da-6303-5e67-8744-51eddeeeb8d7" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" Random123 = "74087812-796a-5b5d-8853-05524746bad3" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" YaoBlocks = "418bc28f-b43b-5e0b-a6e7-61bbc1a2c1df" @@ -1942,9 +1963,9 @@ version = "0.1.19" [[deps.Reactant_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "9aa24ec7eb8a4d3bccb440d3a736219656f5b657" +git-tree-sha1 = "2749c35cb1bcc588ad71a50acf19108b9c6e47ed" uuid = "0192cb87-2b54-54ad-80e0-3be72ad8a3c0" -version = "0.0.358+0" +version = "0.0.371+0" [[deps.RealDot]] deps = ["LinearAlgebra"] @@ -2014,9 +2035,9 @@ version = "1.0.1" [[deps.ScopedValues]] deps = ["HashArrayMappedTries", "Logging"] -git-tree-sha1 = "ac4b837d89a58c848e85e698e2a2514e9d59d8f6" +git-tree-sha1 = "67a144433c4ce877ee6d1ada69a124d6b1ecf7be" uuid = "7e506255-f358-4e82-b7e4-beb19740aa63" -version = "1.6.0" +version = "1.6.2" [[deps.Scratch]] deps = ["Dates"] @@ -2098,7 +2119,7 @@ version = "1.2.2" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -version = "1.12.0" +version = "1.11.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] @@ -2108,9 +2129,9 @@ version = "0.1.2" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "5acc6a41b3082920f79ca3c759acbcecf18a8d78" +git-tree-sha1 = "2700b235561b0335d5bef7097a111dc513b8655e" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.7.1" +version = "2.7.2" weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] @@ -2136,15 +2157,15 @@ version = "0.1.2" [[deps.Static]] deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools", "SciMLPublic"] -git-tree-sha1 = "49440414711eddc7227724ae6e570c7d5559a086" +git-tree-sha1 = "bb072715f158b59ad8819ff80da5ffa90cce6ceb" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.3.1" +version = "1.4.0" [[deps.StaticArrayInterface]] deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "SciMLPublic", "Static"] -git-tree-sha1 = "aa1ea41b3d45ac449d10477f65e2b40e3197a0d2" +git-tree-sha1 = "2a635e15d5035c53b345077c947f31ff91744078" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.9.0" +version = "1.10.0" weakdeps = ["OffsetArrays", "StaticArrays"] [deps.StaticArrayInterface.extensions] @@ -2202,9 +2223,9 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] [[deps.StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "83151ba8065a73f53ca2ae98bc7274d817aa30f2" +git-tree-sha1 = "5316097111523c9a970596a5b33cfea5f92e8581" uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.5.8" +version = "0.5.9" [[deps.StringManipulation]] deps = ["PrecompileTools"] @@ -2214,9 +2235,9 @@ version = "0.4.4" [[deps.StructArrays]] deps = ["ConstructionBase", "DataAPI", "Tables"] -git-tree-sha1 = "a2c37d815bf00575332b7bd0389f771cb7987214" +git-tree-sha1 = "ad8002667372439f2e3611cfd14097e03fa4bccd" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.7.2" +version = "0.7.3" weakdeps = ["Adapt", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "SparseArrays", "StaticArrays"] [deps.StructArrays.extensions] @@ -2233,9 +2254,9 @@ version = "0.3.1" [[deps.StructUtils]] deps = ["Dates", "UUIDs"] -git-tree-sha1 = "fa95b3b097bcef5845c142ea2e085f1b2591e92c" +git-tree-sha1 = "dd974aefe288ef2898733aecf40858dc86742d74" uuid = "ec057cc2-7a8d-4b58-b3b3-92acb9f63b42" -version = "2.7.1" +version = "2.8.1" [deps.StructUtils.extensions] StructUtilsMeasurementsExt = ["Measurements"] @@ -2258,7 +2279,7 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "7.8.3+2" +version = "7.7.0+0" [[deps.TOML]] deps = ["Dates"] @@ -2300,10 +2321,10 @@ uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" version = "0.5.5" [[deps.TiffImages]] -deps = ["ColorTypes", "DataStructures", "DocStringExtensions", "FileIO", "FixedPointNumbers", "IndirectArrays", "Inflate", "Mmap", "OffsetArrays", "PkgVersion", "PrecompileTools", "ProgressMeter", "SIMD", "UUIDs"] -git-tree-sha1 = "08c10bc34f4e7743f530793d0985bf3c254e193d" +deps = ["CodecZstd", "ColorTypes", "DataStructures", "DocStringExtensions", "FileIO", "FixedPointNumbers", "IndirectArrays", "Inflate", "Mmap", "OffsetArrays", "PkgVersion", "PrecompileTools", "ProgressMeter", "SIMD", "UUIDs"] +git-tree-sha1 = "9ca5f1f2d42f80df4b8c9f6ab5a64f438bbd9976" uuid = "731e570b-9d59-4bfa-96dc-6df516fadf69" -version = "0.11.8" +version = "0.11.9" [[deps.Tracy]] deps = ["ExprTools", "LibTracyClient_jll", "Libdl"] @@ -2435,9 +2456,9 @@ version = "0.1.3" [[deps.WeightInitializers]] deps = ["ConcreteStructs", "GPUArraysCore", "LinearAlgebra", "Random", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "d79b71da9e7be904db615bdb99187d30753822a4" +git-tree-sha1 = "2af44c69f5c37b7b1d14e262347a24ba349052d6" uuid = "d49dbf32-c5c2-4618-8acc-27bb2598ef2d" -version = "1.3.1" +version = "1.3.3" [deps.WeightInitializers.extensions] AMDGPUExt = "AMDGPU" @@ -2461,9 +2482,9 @@ version = "1.1.0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "9cce64c0fdd1960b597ba7ecda2950b5ed957438" +git-tree-sha1 = "b29c22e245d092b8b4e8d3c09ad7baa586d9f573" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.8.2+0" +version = "5.8.3+0" [[deps.Xorg_libX11_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] @@ -2510,7 +2531,7 @@ version = "1.6.0+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.3.1+2" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2550,9 +2571,9 @@ version = "0.2.3+0" [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" +git-tree-sha1 = "850b06095ee71f0135d644ffd8a52850699581ed" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.13.1+0" +version = "3.13.3+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] @@ -2563,7 +2584,7 @@ version = "0.17.4+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.15.0+0" +version = "5.11.0+0" [[deps.libfdk_aac_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2573,9 +2594,9 @@ version = "2.0.4+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" +git-tree-sha1 = "e51150d5ab85cee6fc36726850f0e627ad2e4aba" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.55+0" +version = "1.6.58+0" [[deps.libsixel_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "libpng_jll"] @@ -2604,12 +2625,12 @@ version = "2.3.1+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.64.0+1" +version = "1.59.0+0" [[deps.p7zip_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.7.0+0" +version = "17.4.0+2" [[deps.pixi_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] diff --git a/benchmarks/NonStiffBVP/Manifest.toml b/benchmarks/NonStiffBVP/Manifest.toml index 9544f17a7..b9d187c3d 100644 --- a/benchmarks/NonStiffBVP/Manifest.toml +++ b/benchmarks/NonStiffBVP/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.12.4" +julia_version = "1.11.9" manifest_format = "2.0" -project_hash = "1584f256e088ce9dd4cf23d75d9d67eefdf03293" +project_hash = "521ebea4fc51ff8fc10b76bc5629e08ccbf205c2" [[deps.ADTypes]] -git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" +git-tree-sha1 = "bbc22a9a08a0ef6460041086d8a7b27940ed4ffd" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.21.0" +version = "1.22.0" weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] [deps.ADTypes.extensions] @@ -57,9 +57,9 @@ version = "0.1.44" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "35ea197a51ce46fcd01c4a44befce0578a1aaeca" +git-tree-sha1 = "0761717147821d696c9470a7a86364b2fbd22fd8" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.5.0" +version = "4.5.2" weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] @@ -95,9 +95,9 @@ version = "1.1.2" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "78b3a7a536b4b0a747a0f296ea77091ca0a9f9a3" +git-tree-sha1 = "54f895554d05c83e3dd59f6a396671dae8999573" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.23.0" +version = "7.24.0" [deps.ArrayInterface.extensions] ArrayInterfaceAMDGPUExt = "AMDGPU" @@ -163,9 +163,9 @@ version = "0.4.8" [[deps.BVProblemLibrary]] deps = ["DiffEqBase", "Markdown", "SpecialFunctions"] -git-tree-sha1 = "c138a55bdf5fc7a82cd4a20f1457ff784aa6dd47" +git-tree-sha1 = "dc458179d5f499d853fe37913b8d993235a3b909" uuid = "ded0fc24-dfea-4565-b1d9-79c027d14d84" -version = "0.1.8" +version = "0.1.9" [[deps.BandedMatrices]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] @@ -191,27 +191,21 @@ uuid = "18cc8868-cbac-4acf-b575-c8ff214dc66f" version = "1.3.2" [[deps.BenchmarkTools]] -deps = ["Compat", "JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"] -git-tree-sha1 = "7fecfb1123b8d0232218e2da0c213004ff15358d" +deps = ["Compat", "JSON", "Logging", "PrecompileTools", "Printf", "Profile", "Statistics", "UUIDs"] +git-tree-sha1 = "9670d3febc2b6da60a0ae57846ba74670290653f" uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" -version = "1.6.3" +version = "1.8.0" [[deps.BitFlags]] git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" version = "0.1.9" -[[deps.BitTwiddlingConvenienceFunctions]] -deps = ["Static"] -git-tree-sha1 = "f21cfd4950cb9f0587d5067e69405ad2acd27b87" -uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" -version = "0.1.6" - [[deps.BoundaryValueDiffEq]] deps = ["ADTypes", "BoundaryValueDiffEqAscher", "BoundaryValueDiffEqCore", "BoundaryValueDiffEqFIRK", "BoundaryValueDiffEqMIRK", "BoundaryValueDiffEqMIRKN", "BoundaryValueDiffEqShooting", "DiffEqBase", "FastClosures", "ForwardDiff", "LinearAlgebra", "OrdinaryDiffEqTsit5", "Reexport", "SciMLBase"] -git-tree-sha1 = "601b16cb493a593e2a5c459fdcbf40c6834d0354" +git-tree-sha1 = "d2c9cda8321a1bb1e13b1c6694792d053cae0d59" uuid = "764a87c0-6b3e-53db-9096-fe964310641d" -version = "5.20.0" +version = "5.23.0" weakdeps = ["ODEInterface"] [deps.BoundaryValueDiffEq.extensions] @@ -219,45 +213,45 @@ weakdeps = ["ODEInterface"] [[deps.BoundaryValueDiffEqAscher]] deps = ["ADTypes", "AlmostBlockDiagonals", "BoundaryValueDiffEqCore", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "ForwardDiff", "LinearAlgebra", "PreallocationTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "Setfield"] -git-tree-sha1 = "5d344cd499ea5cd44a33b4628ddb468b43da17e2" +git-tree-sha1 = "76710fe77065e0a29f47f91cd8f8038dd6a8a4cc" uuid = "7227322d-7511-4e07-9247-ad6ff830280e" -version = "1.11.0" +version = "1.15.0" [[deps.BoundaryValueDiffEqCore]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "ForwardDiff", "Integrals", "LineSearch", "LinearAlgebra", "Logging", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "OptimizationBase", "PreallocationTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLStructures", "Setfield", "SparseArrays", "SparseConnectivityTracer", "SparseMatrixColorings"] -git-tree-sha1 = "3aa39e8b4304acbbb8792077bc7472f4df8d2200" +deps = ["ADTypes", "Adapt", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "ForwardDiff", "Integrals", "LineSearch", "LinearAlgebra", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "OptimizationBase", "PreallocationTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLStructures", "Setfield", "SparseArrays", "SparseConnectivityTracer", "SparseMatrixColorings"] +git-tree-sha1 = "776af861ee6613f70eb656f04683e624bc391d83" uuid = "56b672f2-a5fe-4263-ab2d-da677488eb3a" -version = "2.1.0" +version = "2.6.0" [[deps.BoundaryValueDiffEqFIRK]] deps = ["ADTypes", "ArrayInterface", "BandedMatrices", "BoundaryValueDiffEqCore", "ConcreteStructs", "DifferentiationInterface", "FastAlmostBandedMatrices", "FastClosures", "ForwardDiff", "LinearAlgebra", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLStructures", "Setfield", "SparseArrays", "StaticArrays"] -git-tree-sha1 = "66c6f917a0d9e5495a6255329e3aef9036705261" +git-tree-sha1 = "b3659387899568593bd67ae36eaaae4353ce41fa" uuid = "85d9eb09-370e-4000-bb32-543851f73618" -version = "1.12.0" +version = "1.17.0" [[deps.BoundaryValueDiffEqMIRK]] deps = ["ADTypes", "ArrayInterface", "BandedMatrices", "BoundaryValueDiffEqCore", "ConcreteStructs", "DifferentiationInterface", "FastAlmostBandedMatrices", "FastClosures", "ForwardDiff", "LinearAlgebra", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLStructures", "Setfield", "SparseArrays"] -git-tree-sha1 = "24809da4777dd3a1fd168c6a18114fd76f6df439" +git-tree-sha1 = "4234288ab0b141be4551dcf0d1e2e526051c3288" uuid = "1a22d4ce-7765-49ea-b6f2-13c8438986a6" -version = "1.12.0" +version = "1.17.0" [[deps.BoundaryValueDiffEqMIRKN]] deps = ["ADTypes", "ArrayInterface", "BandedMatrices", "BoundaryValueDiffEqCore", "ConcreteStructs", "DifferentiationInterface", "FastAlmostBandedMatrices", "FastClosures", "ForwardDiff", "LinearAlgebra", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Setfield", "SparseArrays"] -git-tree-sha1 = "2e36e439a8e59f54a1976847505abb74efd5cdbb" +git-tree-sha1 = "49fb590f976f5c93dd2b574b636ab921745905f6" uuid = "9255f1d6-53bf-473e-b6bd-23f1ff009da4" -version = "1.11.0" +version = "1.16.0" [[deps.BoundaryValueDiffEqShooting]] deps = ["ADTypes", "ArrayInterface", "BandedMatrices", "BoundaryValueDiffEqCore", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "ForwardDiff", "LinearAlgebra", "OrdinaryDiffEqTsit5", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Setfield", "SparseArrays"] -git-tree-sha1 = "bc4d1654c6ea811a681fd1e72647c7977ea1f362" +git-tree-sha1 = "ca7d90cc2003a9bf0e502745f4e8f9a28727da33" uuid = "ed55bfe0-3725-4db6-871e-a1dc9f42a757" -version = "1.12.0" +version = "1.17.0" [[deps.BracketingNonlinearSolve]] deps = ["CommonSolve", "ConcreteStructs", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "4999dff8efd76814f6662519b985aeda975a1924" +git-tree-sha1 = "7ad7171d693ae5552ac43862e7f6b61df4471c2b" uuid = "70df07ce-3d50-431d-a3e7-ca6ddb60ac1e" -version = "1.11.0" +version = "1.12.1" weakdeps = ["ChainRulesCore", "ForwardDiff"] [deps.BracketingNonlinearSolve.extensions] @@ -275,12 +269,6 @@ git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" version = "0.5.0" -[[deps.CPUSummary]] -deps = ["CpuId", "IfElse", "PrecompileTools", "Preferences", "Static"] -git-tree-sha1 = "f3a21d7fc84ba618a779d1ed2fcca2e682865bab" -uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" -version = "0.2.7" - [[deps.CRC32c]] uuid = "8bf52ea8-c179-5cab-976a-9e18b702a9bc" version = "1.11.0" @@ -305,38 +293,38 @@ version = "1.1.1" [[deps.CairoMakie]] deps = ["CRC32c", "Cairo", "Cairo_jll", "Colors", "FileIO", "FreeType", "GeometryBasics", "LinearAlgebra", "Makie", "PrecompileTools"] -git-tree-sha1 = "fa072933899aae6dc61dde934febed8254e66c6a" +git-tree-sha1 = "bf2d9cd1ec0c4ce3e0b5aaad192074969413f626" uuid = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0" -version = "0.15.9" +version = "0.15.10" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d0efe2c6fdcdaa1c161d206aa8b933788397ec71" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.5+1" +version = "1.18.6+0" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" +git-tree-sha1 = "12177ad6b3cad7fd50c8b3825ce24a99ad61c18f" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.26.0" +version = "1.26.1" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] ChainRulesCoreSparseArraysExt = "SparseArrays" -[[deps.CloseOpenIntervals]] -deps = ["Static", "StaticArrayInterface"] -git-tree-sha1 = "05ba0d07cd4fd8b7a39541e31a7b0254704ea581" -uuid = "fb6a15b2-703c-40df-9091-08a04967cfa9" -version = "0.1.13" - [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" version = "0.7.8" +[[deps.CodecZstd]] +deps = ["TranscodingStreams", "Zstd_jll"] +git-tree-sha1 = "da54a6cd93c54950c15adf1d336cfd7d71f51a56" +uuid = "6b39b394-51ab-5f42-8807-6242bab2b4c2" +version = "0.8.7" + [[deps.ColorBrewer]] deps = ["Colors", "JSON"] git-tree-sha1 = "07da79661b919001e6863b81fc572497daa58349" @@ -391,11 +379,6 @@ git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.1" -[[deps.CommonWorldInvalidations]] -git-tree-sha1 = "ae52d1c52048455e85a387fbee9be553ec2b68d0" -uuid = "f70d9fcc-98c5-4d4a-abd7-e4cdeebd8ca8" -version = "1.0.0" - [[deps.Compat]] deps = ["TOML", "UUIDs"] git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" @@ -409,7 +392,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.3.0+1" +version = "1.1.1+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -459,11 +442,17 @@ git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" version = "0.6.3" -[[deps.CpuId]] -deps = ["Markdown"] -git-tree-sha1 = "fcbb72b032692610bfbdb15018ac16a36cf2e406" -uuid = "adafc99b-e345-5852-983c-f28acb93d879" -version = "0.3.1" +[[deps.CoreMath]] +deps = ["CoreMath_jll"] +git-tree-sha1 = "8c0480f92b1b1796239156a1b9b1bfb1b39499b4" +uuid = "b7a15901-be09-4a0e-87d2-2e66b0e09b5a" +version = "0.1.0" + +[[deps.CoreMath_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a692a4c1dc59a4b8bc0b6403876eb3250fde2bc3" +uuid = "a38c48d9-6df1-5ac9-9223-b6ada3b5572b" +version = "0.1.0+0" [[deps.DataAPI]] git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" @@ -472,9 +461,9 @@ version = "1.16.0" [[deps.DataStructures]] deps = ["OrderedCollections"] -git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" +git-tree-sha1 = "e86f4a2805f7f19bec5129bc9150c38208e5dc23" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.19.3" +version = "0.19.4" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -505,10 +494,10 @@ uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" version = "1.9.1" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "96e0d3006aac4a322691de81f0baedd38b62a0c4" +deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "2d7ca58e6ce2d1f7a435773d73d111741e283070" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.211.0" +version = "7.1.0" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" @@ -548,16 +537,16 @@ version = "6.211.0" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.DiffEqDevTools]] -deps = ["BracketingNonlinearSolve", "CommonSolve", "DiffEqBase", "DiffEqNoiseProcess", "Distributed", "ExplicitImports", "LinearAlgebra", "Logging", "RecipesBase", "RecursiveArrayTools", "RootedTrees", "SciMLBase", "Statistics", "StructArrays"] -git-tree-sha1 = "85b69022536add40c3ef422f6f2224cd59f65076" +deps = ["DiffEqBase", "DiffEqNoiseProcess", "Distributed", "LinearAlgebra", "Logging", "NLsolve", "RecipesBase", "RecursiveArrayTools", "RootedTrees", "SciMLBase", "Statistics", "StructArrays"] +git-tree-sha1 = "cc290a2fdad4d332ba6a88953eaf5800687ccd49" uuid = "f3b72e0c-5b89-59e1-b016-84e28bfd966d" -version = "2.51.0" +version = "3.0.0" [[deps.DiffEqNoiseProcess]] deps = ["CommonSolve", "DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "PoissonRandom", "QuadGK", "Random", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "b879ca516034469f28becdf01f85f56b45f518b9" +git-tree-sha1 = "5b5fe6eb9e994ff0de4e84fe149b03c706fd6403" uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" -version = "5.27.0" +version = "5.31.0" [deps.DiffEqNoiseProcess.extensions] DiffEqNoiseProcessOptimExt = "Optim" @@ -581,9 +570,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +git-tree-sha1 = "d0250552e42bf7cc36479fd38a6e30004c9e8c2b" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.7.16" +version = "0.7.17" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -593,7 +582,7 @@ version = "0.7.16" DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] - DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGPUArraysCoreExt = ["GPUArraysCore", "Adapt"] DifferentiationInterfaceGTPSAExt = "GTPSA" DifferentiationInterfaceMooncakeExt = "Mooncake" DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] @@ -607,6 +596,7 @@ version = "0.7.16" DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] [deps.DifferentiationInterface.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" @@ -629,6 +619,17 @@ version = "0.7.16" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" +[[deps.Distances]] +deps = ["LinearAlgebra", "Statistics", "StatsAPI"] +git-tree-sha1 = "c7e3a542b999843086e2f29dac96a618c105be1d" +uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" +version = "0.10.12" +weakdeps = ["ChainRulesCore", "SparseArrays"] + + [deps.Distances.extensions] + DistancesChainRulesCoreExt = "ChainRulesCore" + DistancesSparseArraysExt = "SparseArrays" + [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" @@ -636,9 +637,9 @@ version = "1.11.0" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" +git-tree-sha1 = "e421c1938fafab0165b04dc1a9dbe2a26272952c" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.123" +version = "0.25.125" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -658,7 +659,7 @@ version = "0.9.5" [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.7.0" +version = "1.6.0" [[deps.EarCut_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -672,9 +673,9 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.7" [[deps.EnzymeCore]] -git-tree-sha1 = "990991b8aa76d17693a98e3a915ac7aa49f08d1a" +git-tree-sha1 = "c6ee69ee502060982d12dbaaf3d8fcb4e835a0d1" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.8.18" +version = "0.8.20" weakdeps = ["Adapt", "ChainRulesCore"] [deps.EnzymeCore.extensions] @@ -701,36 +702,15 @@ version = "0.1.11" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "27af30de8b5445644e8ffe3bcb0d72049c089cf1" +git-tree-sha1 = "8f05e9a2e7c2e3eb524102bb2926c5743c07fbe1" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.7.3+0" - -[[deps.ExplicitImports]] -deps = ["Markdown", "Pkg", "PrecompileTools", "TOML", "Test"] -git-tree-sha1 = "a8b6c26bf0ea9f8c4bad71e109a5fa64f34be392" -uuid = "7d51a73a-1435-4ff3-83d9-f097790105c7" -version = "1.15.0" - -[[deps.ExponentialUtilities]] -deps = ["Adapt", "ArrayInterface", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "PrecompileTools", "Printf", "SparseArrays", "libblastrampoline_jll"] -git-tree-sha1 = "cc294ead6a85e975a8519dd4a0a6cb294eeb18d1" -uuid = "d4d017d3-3776-5f7e-afef-a10c40355c18" -version = "1.30.0" -weakdeps = ["StaticArrays"] - - [deps.ExponentialUtilities.extensions] - ExponentialUtilitiesStaticArraysExt = "StaticArrays" +version = "2.8.0+0" [[deps.ExprTools]] git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" version = "0.1.10" -[[deps.ExproniconLite]] -git-tree-sha1 = "c13f0b150373771b0fdc1713c97860f8df12e6c2" -uuid = "55351af7-c7e9-48d6-89ff-24e801d99491" -version = "0.10.14" - [[deps.Extents]] git-tree-sha1 = "b309b36a9e02fe7be71270dd8c0fd873625332b4" uuid = "411431e0-e8b7-467b-b5e0-f676ba4f2910" @@ -744,9 +724,9 @@ version = "0.4.5" [[deps.FFMPEG_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libva_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "66381d7059b5f3f6162f28831854008040a4e905" +git-tree-sha1 = "cac41ca6b2d399adfc95e51240566f8a60a80806" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "8.0.1+1" +version = "8.1.0+0" [[deps.FFTA]] deps = ["AbstractFFTs", "DocStringExtensions", "LinearAlgebra", "MuladdMacro", "Primes", "Random", "Reexport"] @@ -761,22 +741,24 @@ uuid = "9d29842c-ecb8-4973-b1e9-a27b1157504e" version = "0.1.6" [[deps.FastBroadcast]] -deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "ab1b34570bcdf272899062e1a56285a53ecaae08" +deps = ["ArrayInterface", "LinearAlgebra"] +git-tree-sha1 = "7feeed2c9a7fa272189a5561bebf0c4ccaedb6ec" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.3.5" +version = "1.3.2" + + [deps.FastBroadcast.extensions] + FastBroadcastPolyesterExt = "Polyester" + FastBroadcastStaticExt = "Static" + + [deps.FastBroadcast.weakdeps] + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" + Static = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" version = "0.3.2" -[[deps.FastGaussQuadrature]] -deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "0044e9f5e49a57e88205e8f30ab73928b05fe5b6" -uuid = "442a2c76-b920-505d-bb47-c5924d526838" -version = "1.1.0" - [[deps.FastPower]] git-tree-sha1 = "862831f78c7a48681a074ecc9aac09f2de563f71" uuid = "a4df4552-cc26-4903-aec0-212e50a0e84b" @@ -802,9 +784,9 @@ version = "1.3.1" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "6522cfb3b8fe97bec632252263057996cbd3de20" +git-tree-sha1 = "8e9c059d6857607253e837730dbf780b6b151acd" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.18.0" +version = "1.19.0" weakdeps = ["HTTP"] [deps.FileIO.extensions] @@ -856,9 +838,9 @@ weakdeps = ["PDMats", "SparseArrays", "StaticArrays", "Statistics"] [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "9340ca07ca27093ff68418b7558ca37b05f8aeb1" +git-tree-sha1 = "f7017a4f337f8df189fcce98e32b67a1298a2115" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.29.0" +version = "2.31.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -929,10 +911,19 @@ uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" version = "1.1.3" [[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +deps = ["FunctionWrappers", "PrecompileTools", "TruncatedStacktraces"] +git-tree-sha1 = "c1b0c3a166a2a393257aa888787ca817532e14ce" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" +version = "1.8.0" + + [deps.FunctionWrappersWrappers.extensions] + FunctionWrappersWrappersEnzymeExt = ["Enzyme", "EnzymeCore"] + FunctionWrappersWrappersMooncakeExt = "Mooncake" + + [deps.FunctionWrappersWrappers.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" [[deps.Future]] deps = ["Random"] @@ -941,9 +932,9 @@ version = "1.11.0" [[deps.GLFW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] -git-tree-sha1 = "b7bfd56fa66616138dfe5237da4dc13bbd83c67f" +git-tree-sha1 = "9e0fb9e54594c47f278d75063980e43066e26e20" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.4.1+0" +version = "3.4.1+1" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -967,12 +958,6 @@ git-tree-sha1 = "be8a1b8065959e24fdc1b51402f39f3b6f0f6653" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" version = "0.73.24+0" -[[deps.GenericSchur]] -deps = ["LinearAlgebra", "Printf"] -git-tree-sha1 = "a694e2a57394e409f7a11ee0977362a9fafcb8c7" -uuid = "c145ed77-6b09-5dd9-b285-bf645a82121e" -version = "0.5.6" - [[deps.GeometryBasics]] deps = ["EarCut_jll", "Extents", "IterTools", "LinearAlgebra", "PrecompileTools", "Random", "StaticArrays"] git-tree-sha1 = "1f5a80f4ed9f5a4aada88fc2db456e637676414b" @@ -1017,9 +1002,9 @@ version = "3.7.0+0" [[deps.Git_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "dc34a3e3d96b4ed305b641e626dc14c12b7824b8" +git-tree-sha1 = "0dd4cfb426924210c8f42742751cbde74b27bfa3" uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb" -version = "2.53.0+0" +version = "2.54.0+0" [[deps.Glib_jll]] deps = ["Artifacts", "GettextRuntime_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] @@ -1094,11 +1079,6 @@ version = "1.34.4" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" Revise = "295af30f-e4ad-537b-8983-00126c2a3abe" -[[deps.IfElse]] -git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" -uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" -version = "0.1.1" - [[deps.ImageAxes]] deps = ["AxisArrays", "ImageBase", "ImageCore", "Reexport", "SimpleTraits"] git-tree-sha1 = "e12629406c6c4442539436581041d372d69c55ba" @@ -1152,9 +1132,9 @@ version = "0.1.3" [[deps.Integrals]] deps = ["ArrayInterface", "CommonSolve", "HCubature", "LinearAlgebra", "MonteCarloIntegration", "QuadGK", "Random", "Reexport", "SciMLBase", "SciMLLogging"] -git-tree-sha1 = "e89de2c83d4c16d75570d98ca5202cf907f25947" +git-tree-sha1 = "a93089c3454ab25f08f2c8c7eb81e7bba4343c12" uuid = "de52edbc-65ea-441a-8357-d3a637375a31" -version = "5.1.0" +version = "5.4.0" [deps.Integrals.extensions] IntegralsArblibExt = "Arblib" @@ -1162,6 +1142,7 @@ version = "5.1.0" IntegralsCubatureExt = "Cubature" IntegralsDifferentiationInterfaceExt = ["ADTypes", "DifferentiationInterface", "ChainRulesCore"] IntegralsFastGaussQuadratureExt = "FastGaussQuadrature" + IntegralsFastTanhSinhQuadratureExt = "FastTanhSinhQuadrature" IntegralsForwardDiffExt = "ForwardDiff" IntegralsHAdaptiveIntegrationExt = "HAdaptiveIntegration" IntegralsMCIntegrationExt = "MCIntegration" @@ -1176,6 +1157,7 @@ version = "5.1.0" Cubature = "667455a9-e2ce-5579-9412-b964f529a492" DifferentiationInterface = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" FastGaussQuadrature = "442a2c76-b920-505d-bb47-c5924d526838" + FastTanhSinhQuadrature = "b650e0df-f744-4436-b963-b44034668c57" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" HAdaptiveIntegration = "eaa5ad34-b243-48e9-b09c-54bc0655cecf" MCIntegration = "ea1e2de9-7db7-4b42-91ee-0cd1bf6df167" @@ -1205,16 +1187,17 @@ weakdeps = ["ForwardDiff", "Unitful"] InterpolationsUnitfulExt = "Unitful" [[deps.IntervalArithmetic]] -deps = ["CRlibm", "MacroTools", "OpenBLASConsistentFPCSR_jll", "Printf", "Random", "RoundingEmulator"] -git-tree-sha1 = "2cce1fed119ca7b6cc230c4a3b85202478af7924" +deps = ["CRlibm", "CoreMath", "MacroTools", "OpenBLASConsistentFPCSR_jll", "Printf", "Random", "RoundingEmulator"] +git-tree-sha1 = "3e6273749a2df3a5c9067657510ad01ba5039a92" uuid = "d1acc4aa-44c8-5952-acd4-ba5d80a2a253" -version = "1.0.3" +version = "1.0.8" [deps.IntervalArithmetic.extensions] IntervalArithmeticArblibExt = "Arblib" IntervalArithmeticDiffRulesExt = "DiffRules" IntervalArithmeticForwardDiffExt = "ForwardDiff" IntervalArithmeticIntervalSetsExt = "IntervalSets" + IntervalArithmeticIrrationalConstantsExt = "IrrationalConstants" IntervalArithmeticLinearAlgebraExt = "LinearAlgebra" IntervalArithmeticRecipesBaseExt = "RecipesBase" IntervalArithmeticSparseArraysExt = "SparseArrays" @@ -1224,14 +1207,15 @@ version = "1.0.3" DiffRules = "b552c78f-8df3-52c6-915a-8e097449b14b" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + IrrationalConstants = "92d709cd-6900-40b7-9082-c6be49f344b6" LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[deps.IntervalSets]] -git-tree-sha1 = "d966f85b3b7a8e49d034d27a189e9a4874b4391a" +git-tree-sha1 = "79d6bd28c8d9bccc2229784f1bd637689b256377" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.13" +version = "0.7.14" weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] @@ -1288,12 +1272,6 @@ git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.4" -[[deps.Jieko]] -deps = ["ExproniconLite"] -git-tree-sha1 = "2f05ed29618da60c06a87e9c033982d4f71d0b6c" -uuid = "ae98c720-c025-4a4a-838c-29b094483192" -version = "0.2.1" - [[deps.JpegTurbo]] deps = ["CEnum", "FileIO", "ImageCore", "JpegTurbo_jll", "TOML"] git-tree-sha1 = "9496de8fb52c224a2e3f9ff403947674517317d9" @@ -1302,14 +1280,9 @@ version = "0.1.6" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "b6893345fd6658c8e475d40155789f4860ac3b21" +git-tree-sha1 = "c0c9b76f3520863909825cbecdef58cd63de705a" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.1.4+0" - -[[deps.JuliaSyntaxHighlighting]] -deps = ["StyledStrings"] -uuid = "ac6e5ff7-fb65-4e79-a425-ec3bc9c03011" -version = "1.12.0" +version = "3.1.5+0" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTA", "Interpolations", "StatsBase"] @@ -1331,9 +1304,9 @@ version = "3.100.3+0" [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "aaafe88dccbd957a8d82f7d05be9b69172e0cee3" +git-tree-sha1 = "17b94ecafcfa45e8360a4fc9ca6b583b049e4e37" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "4.0.1+0" +version = "4.1.0+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1341,12 +1314,6 @@ git-tree-sha1 = "eb62a3deb62fc6d8822c0c4bef73e4412419c5d8" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" version = "18.1.8+0" -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "1c602b1127f4751facb671441ca72715cc95938a" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.3+0" - [[deps.LaTeXStrings]] git-tree-sha1 = "dda21b8cbd6a6c40d9d02a73230f9d70fed6918c" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" @@ -1376,17 +1343,11 @@ git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" version = "0.0.1" -[[deps.LayoutPointers]] -deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "a9eaadb366f5493a5654e843864c13d8b107548c" -uuid = "10f19ff3-798f-405d-979b-55457f8fc047" -version = "0.1.17" - [[deps.LazyArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "41d433e5854d7a67e8ab2b04962a713fcbcffcf1" +git-tree-sha1 = "33b5d8fafb7ab69eca907b359d00d0107feb2cbf" uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "2.9.5" +version = "2.9.7" [deps.LazyArrays.extensions] LazyArraysBandedMatricesExt = "BandedMatrices" @@ -1416,24 +1377,24 @@ uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" version = "0.6.4" [[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "OpenSSL_jll", "Zlib_jll", "nghttp2_jll"] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.15.0+0" +version = "8.6.0+0" [[deps.LibGit2]] -deps = ["LibGit2_jll", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" version = "1.11.0" [[deps.LibGit2_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "OpenSSL_jll"] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.9.0+0" +version = "1.7.2+0" [[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "OpenSSL_jll"] +deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.11.3+1" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -1459,9 +1420,9 @@ version = "1.18.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "97bbca976196f2a1eb9607131cb108c69ec3f8a6" +git-tree-sha1 = "cc3ad4faf30015a3e8094c9b5b7f19e85bdf2386" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] @@ -1471,15 +1432,15 @@ version = "4.7.2+0" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d0205286d9eceadc518742860bf23f703779a3d6" +git-tree-sha1 = "d620582b1f0cbe2c72dd1d5bd195a9ce73370ab1" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.LineSearch]] deps = ["ADTypes", "CommonSolve", "ConcreteStructs", "FastClosures", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "SciMLBase", "SciMLJacobianOperators", "StaticArraysCore"] -git-tree-sha1 = "9f7253c0574b4b585c8909232adb890930da980a" +git-tree-sha1 = "fd58a77c92e7c8f1db25c9839127d52943a49349" uuid = "87fe0de2-c867-4266-b59a-2f0a94fc965b" -version = "0.1.6" +version = "0.1.9" weakdeps = ["LineSearches"] [deps.LineSearch.extensions] @@ -1487,20 +1448,20 @@ weakdeps = ["LineSearches"] [[deps.LineSearches]] deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Printf"] -git-tree-sha1 = "738bdcacfef25b3a9e4a39c28613717a6b23751e" +git-tree-sha1 = "9ea3422d03222c6de679934d1c08f0a99405aa03" uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.6.0" +version = "7.5.1" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" -version = "1.12.0" +version = "1.11.0" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "adbd4c44ef9361c67dd5dc192b66ac12b9e1be85" +deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] +git-tree-sha1 = "42b5cb44317e89ef75dd841c9c8eba9045bf9ff0" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "3.68.0" +version = "3.75.0" [deps.LinearSolve.extensions] LinearSolveAMDGPUExt = "AMDGPU" @@ -1511,7 +1472,9 @@ version = "3.68.0" LinearSolveCUDAExt = "CUDA" LinearSolveCUDSSExt = "CUDSS" LinearSolveCUSOLVERRFExt = ["CUSOLVERRF", "SparseArrays"] + LinearSolveChainRulesCoreExt = "ChainRulesCore" LinearSolveCliqueTreesExt = ["CliqueTrees", "SparseArrays"] + LinearSolveElementalExt = "Elemental" LinearSolveEnzymeExt = ["EnzymeCore", "SparseArrays"] LinearSolveFastAlmostBandedMatricesExt = "FastAlmostBandedMatrices" LinearSolveFastLapackInterfaceExt = "FastLapackInterface" @@ -1523,7 +1486,9 @@ version = "3.68.0" LinearSolveKrylovKitExt = "KrylovKit" LinearSolveMetalExt = "Metal" LinearSolveMooncakeExt = "Mooncake" + LinearSolvePETScCSRExt = ["PETSc", "SparseArrays", "SparseMatricesCSR"] LinearSolvePETScExt = ["PETSc", "SparseArrays"] + LinearSolvePETScMPIExt = ["PETSc", "PartitionedArrays", "SparseArrays", "SparseMatricesCSR"] LinearSolveParUExt = ["ParU_jll", "SparseArrays"] LinearSolvePardisoExt = ["Pardiso", "SparseArrays"] LinearSolveRecursiveFactorizationExt = "RecursiveFactorization" @@ -1538,7 +1503,9 @@ version = "3.68.0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" CUSOLVERRF = "a8cc9031-bad2-4722-94f5-40deabb4245c" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" + Elemental = "902c3f28-d1ec-5e7e-8399-a24c3845ee38" EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" FastLapackInterface = "29a986be-02c6-4525-aec4-84b980013641" @@ -1554,8 +1521,10 @@ version = "3.68.0" PETSc = "ace2c81b-2b5f-4b1e-a30d-d662738edfe0" ParU_jll = "9e0b026c-e8ce-559c-a2c4-6a3d5c955bc9" Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" + PartitionedArrays = "5a9dfac6-5c52-46f7-8278-5e2210713be9" RecursiveFactorization = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseMatricesCSR = "a0a7dd2c-ebf4-11e9-1f05-cf50bc540ca1" Sparspak = "e56a9233-b9d6-4f03-8d0f-1825330902ac" blis_jll = "6136c539-28a5-5bf0-87cc-b183200dce32" @@ -1598,9 +1567,9 @@ version = "0.5.16" [[deps.Makie]] deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "ComputePipeline", "Contour", "Dates", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FilePaths", "FixedPointNumbers", "Format", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageBase", "ImageIO", "InteractiveUtils", "Interpolations", "IntervalSets", "InverseFunctions", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "Markdown", "MathTeXEngine", "Observables", "OffsetArrays", "PNGFiles", "Packing", "Pkg", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Scratch", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun", "Unitful"] -git-tree-sha1 = "68af66ec16af8b152309310251ecb4fbfe39869f" +git-tree-sha1 = "0708c6a1f3cb18ba6482c4174058084c8d6deaf4" uuid = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" -version = "0.24.9" +version = "0.24.10" [deps.Makie.extensions] MakieDynamicQuantitiesExt = "DynamicQuantities" @@ -1608,18 +1577,13 @@ version = "0.24.9" [deps.Makie.weakdeps] DynamicQuantities = "06fc5a27-2a28-4c7c-a15d-362465fb6821" -[[deps.ManualMemory]] -git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" -uuid = "d125e4d3-2237-4719-b19c-fa641b8a4667" -version = "0.1.8" - [[deps.MappedArrays]] git-tree-sha1 = "0ee4497a4e80dbd29c058fcee6493f5219556f40" uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" version = "0.4.3" [[deps.Markdown]] -deps = ["Base64", "JuliaSyntaxHighlighting", "StyledStrings"] +deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" version = "1.11.0" @@ -1656,10 +1620,9 @@ uuid = "739be429-bea8-5141-9913-cc70e7f3736d" version = "1.1.10" [[deps.MbedTLS_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "ff69a2b1330bcb730b9ac1ab7dd680176f5896b8" +deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.1010+0" +version = "2.28.6+0" [[deps.Measures]] git-tree-sha1 = "b513cedd20d9c914783d8ad83d08120702bf2c77" @@ -1688,15 +1651,9 @@ git-tree-sha1 = "7b86a5d4d70a9f5cdf2dacb3cbe6d251d1a61dbe" uuid = "e94cdb99-869f-56ef-bcf0-1ae2bcbe0389" version = "0.3.4" -[[deps.Moshi]] -deps = ["ExproniconLite", "Jieko"] -git-tree-sha1 = "53f817d3e84537d84545e0ad749e483412dd6b2a" -uuid = "2e0e35c7-a2e4-4343-998d-7ef72827ed2d" -version = "0.3.7" - [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2025.11.4" +version = "2023.12.12" [[deps.MuladdMacro]] git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" @@ -1710,10 +1667,16 @@ uuid = "ffc61752-8dc7-55ee-8c37-f3e9cdd09e70" version = "1.0.21" [[deps.NLSolversBase]] -deps = ["ADTypes", "DifferentiationInterface", "FiniteDiff", "LinearAlgebra"] -git-tree-sha1 = "b3f76b463c7998473062992b246045e6961a074e" +deps = ["ADTypes", "DifferentiationInterface", "Distributed", "FiniteDiff", "ForwardDiff"] +git-tree-sha1 = "25a6638571a902ecfb1ae2a18fc1575f86b1d4df" uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" -version = "8.0.0" +version = "7.10.0" + +[[deps.NLsolve]] +deps = ["Distances", "LineSearches", "LinearAlgebra", "NLSolversBase", "Printf", "Reexport"] +git-tree-sha1 = "019f12e9a1a7880459d0173c182e6a99365d7ac1" +uuid = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" +version = "4.5.1" [[deps.NaNMath]] deps = ["OpenLibm_jll"] @@ -1729,13 +1692,13 @@ version = "1.1.1" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.3.0" +version = "1.2.0" [[deps.NonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SciMLLogging", "SimpleNonlinearSolve", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "da41d5cd90c1118f5a8914392cf561263a1d09cb" +deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SciMLLogging", "Setfield", "SimpleNonlinearSolve", "StaticArraysCore", "SymbolicIndexingInterface"] +git-tree-sha1 = "ae0b0f875e4dfda538ab6977ec7939126ee9a1fe" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "4.15.0" +version = "4.19.0" [deps.NonlinearSolve.extensions] NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" @@ -1765,10 +1728,10 @@ version = "4.15.0" Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" [[deps.NonlinearSolveBase]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "LinearAlgebra", "LogExpFunctions", "Markdown", "MaybeInplace", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "28ddfd7d136564c5b2a09d28759feccc2005dbea" +deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "LogExpFunctions", "Markdown", "MaybeInplace", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] +git-tree-sha1 = "a19a5df29ef2b197499fc631fa1a59385ae15262" uuid = "be0214bd-f91f-a760-ac4e-3421ce2b2da0" -version = "2.16.0" +version = "2.25.0" [deps.NonlinearSolveBase.extensions] NonlinearSolveBaseBandedMatricesExt = "BandedMatrices" @@ -1798,15 +1761,15 @@ version = "2.16.0" [[deps.NonlinearSolveFirstOrder]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConcreteStructs", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLJacobianOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "df31d105d8e7254447256a44606f2a7e98b61aba" +git-tree-sha1 = "ce68820a4f421fb5bee7ec4dcf875aff33886bfb" uuid = "5959db7a-ea39-4486-b5fe-2dd0bf03d60d" -version = "1.11.1" +version = "2.1.1" [[deps.NonlinearSolveQuasiNewton]] deps = ["ArrayInterface", "CommonSolve", "ConcreteStructs", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLOperators", "StaticArraysCore"] -git-tree-sha1 = "ade27e8e9566b6cec63ee62f6a6650a11cf9a2eb" +git-tree-sha1 = "538432ca1aea8bf63db02929bf870501f8a7c64c" uuid = "9a2c21bd-3a47-402d-9113-8faf9a0ee114" -version = "1.12.0" +version = "1.13.1" weakdeps = ["ForwardDiff"] [deps.NonlinearSolveQuasiNewton.extensions] @@ -1814,9 +1777,9 @@ weakdeps = ["ForwardDiff"] [[deps.NonlinearSolveSpectralMethods]] deps = ["CommonSolve", "ConcreteStructs", "LineSearch", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "eafd027b5cd768f19bb5de76c0e908a9065ddd36" +git-tree-sha1 = "a3781e12becdf0ce5520bd97ec617e879bf4e9f2" uuid = "26075421-4e9a-44e1-8bd1-420ed7ad02b2" -version = "1.6.0" +version = "1.7.1" weakdeps = ["ForwardDiff"] [deps.NonlinearSolveSpectralMethods.extensions] @@ -1856,14 +1819,14 @@ version = "1.3.6+0" [[deps.OpenBLASConsistentFPCSR_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f2b3b9e52a5eb6a3434c8cca67ad2dde011194f4" +git-tree-sha1 = "3287ec88df50429a934ebc6cf14606215e27b987" uuid = "6cdc7f73-28fd-5e50-80fb-958a8875b1af" -version = "0.3.30+0" +version = "0.3.33+0" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.29+0" +version = "0.3.27+1" [[deps.OpenEXR]] deps = ["Colors", "FileIO", "OpenEXR_jll"] @@ -1873,20 +1836,20 @@ version = "0.3.3" [[deps.OpenEXR_jll]] deps = ["Artifacts", "Imath_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "df9b7c88c2e7a2e77146223c526bf9e236d5f450" +git-tree-sha1 = "9ac7c730c53b3b5d9a73fb900ac4b4fc263774db" uuid = "18a262bb-aa17-5467-a713-aee519bc75cb" -version = "3.4.4+0" +version = "3.4.9+0" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.7+0" +version = "0.8.5+0" [[deps.OpenSSH_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "OpenSSL_jll", "Zlib_jll"] -git-tree-sha1 = "301412a644646fdc0ad67d0a87487466b491e53d" +git-tree-sha1 = "57baa4b81a24c2910afbb6d853aa0685e4312bf7" uuid = "9bd350c2-7e96-507f-8002-3f2e150b4e1b" -version = "10.2.1+0" +version = "10.3.1+0" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "NetworkOptions", "OpenSSL_jll", "Sockets"] @@ -1895,9 +1858,10 @@ uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" version = "1.6.1" [[deps.OpenSSL_jll]] -deps = ["Artifacts", "Libdl"] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "2ac022577e5eac7da040de17776d51bb770cd895" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.5.4+0" +version = "3.5.6+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -1907,9 +1871,9 @@ version = "0.5.6+0" [[deps.OptimizationBase]] deps = ["ADTypes", "ArrayInterface", "DifferentiationInterface", "DocStringExtensions", "FastClosures", "LinearAlgebra", "PDMats", "PrecompileTools", "Reexport", "SciMLBase", "SciMLLogging", "SparseArrays", "SparseConnectivityTracer", "SparseMatrixColorings", "SymbolicIndexingInterface"] -git-tree-sha1 = "a3d7837832e515111c95a02df7dc55edbdf17d8a" +git-tree-sha1 = "642ea067d729f1f18795a434550b40de0a4fbbc8" uuid = "bca83a33-5cc9-4baa-983d-23429ab6bcbb" -version = "5.1.0" +version = "5.1.1" [deps.OptimizationBase.extensions] OptimizationChainRulesCoreExt = "ChainRulesCore" @@ -1947,28 +1911,22 @@ uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.8.1" [[deps.OrdinaryDiffEq]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FillArrays", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "MacroTools", "MuladdMacro", "NonlinearSolve", "OrdinaryDiffEqAdamsBashforthMoulton", "OrdinaryDiffEqBDF", "OrdinaryDiffEqCore", "OrdinaryDiffEqDefault", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqExplicitRK", "OrdinaryDiffEqExponentialRK", "OrdinaryDiffEqExtrapolation", "OrdinaryDiffEqFIRK", "OrdinaryDiffEqFeagin", "OrdinaryDiffEqFunctionMap", "OrdinaryDiffEqHighOrderRK", "OrdinaryDiffEqIMEXMultistep", "OrdinaryDiffEqLinear", "OrdinaryDiffEqLowOrderRK", "OrdinaryDiffEqLowStorageRK", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqNordsieck", "OrdinaryDiffEqPDIRK", "OrdinaryDiffEqPRK", "OrdinaryDiffEqQPRK", "OrdinaryDiffEqRKN", "OrdinaryDiffEqRosenbrock", "OrdinaryDiffEqSDIRK", "OrdinaryDiffEqSSPRK", "OrdinaryDiffEqStabilizedIRK", "OrdinaryDiffEqStabilizedRK", "OrdinaryDiffEqSymplecticRK", "OrdinaryDiffEqTsit5", 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[[deps.OrdinaryDiffEqCore]] -deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ConcreteStructs", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FillArrays", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "Polyester", "PrecompileTools", "Preferences", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Static", "StaticArrayInterface", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "a045f288671d99e23efc4ea32564cedd0fc7373d" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ConcreteStructs", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "PrecompileTools", "Preferences", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "86c210d134f09139a294f0329006d6cc20275650" uuid = "bbf590c4-e513-4bbe-9b18-05decba2e5d8" -version = "3.23.0" +version = "4.0.0" [deps.OrdinaryDiffEqCore.extensions] OrdinaryDiffEqCoreMooncakeExt = "Mooncake" @@ -1980,174 +1938,65 @@ version = "3.23.0" [[deps.OrdinaryDiffEqDefault]] deps = ["ADTypes", "DiffEqBase", "EnumX", "LinearAlgebra", "LinearSolve", "OrdinaryDiffEqBDF", "OrdinaryDiffEqCore", "OrdinaryDiffEqRosenbrock", "OrdinaryDiffEqTsit5", "OrdinaryDiffEqVerner", "PrecompileTools", "Preferences", "Reexport", "SciMLBase"] -git-tree-sha1 = "5fbd116f93790ce79c4beff8206e1b8e45c492a2" +git-tree-sha1 = "c2ad58656aff6d468109df04a246b018e92b21d8" uuid = "50262376-6c5a-4cf5-baba-aaf4f84d72d7" -version = "1.14.0" +version = "2.1.0" [[deps.OrdinaryDiffEqDifferentiation]] -deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "LinearAlgebra", "LinearSolve", "OrdinaryDiffEqCore", "SciMLBase", "SciMLOperators", "SparseMatrixColorings", "StaticArrayInterface", "StaticArrays"] -git-tree-sha1 = "50c57c04c8058008bf4e4e8bb345925ec0ffef54" +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "LinearAlgebra", "LinearSolve", "OrdinaryDiffEqCore", "SciMLBase", "SciMLOperators", "SparseMatrixColorings", "StaticArraysCore"] +git-tree-sha1 = "faf3fe4824557bc72aa126a845586f71d377a70a" uuid = "4302a76b-040a-498a-8c04-15b101fed76b" -version = "2.3.0" +version = "3.0.0" weakdeps = ["SparseArrays"] [deps.OrdinaryDiffEqDifferentiation.extensions] OrdinaryDiffEqDifferentiationSparseArraysExt = "SparseArrays" -[[deps.OrdinaryDiffEqExplicitRK]] -deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] -git-tree-sha1 = "0b70d2d78d21b3c9fb200c7921750ca863302204" -uuid = "9286f039-9fbf-40e8-bf65-aa933bdc4db0" -version = "1.10.0" - -[[deps.OrdinaryDiffEqExponentialRK]] -deps = ["ADTypes", "DiffEqBase", "ExponentialUtilities", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "RecursiveArrayTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "71acd5838f981f6a53b1db3fab73ed9de1234659" -uuid = "e0540318-69ee-4070-8777-9e2de6de23de" -version = "1.14.0" - -[[deps.OrdinaryDiffEqExtrapolation]] -deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "FastPower", "LinearSolve", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "Polyester", "RecursiveArrayTools", "Reexport", "SciMLBase"] -git-tree-sha1 = 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"a70c74cbc0d7f83329359d9a229bc798ee768aa0" +deps = ["ADTypes", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqRosenbrockTableaus", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase"] +git-tree-sha1 = "803334224154e4a2a9d984547dd4449d3ca71c63" uuid = "43230ef6-c299-4910-a778-202eb28ce4ce" -version = "1.26.0" +version = "2.0.0" + +[[deps.OrdinaryDiffEqRosenbrockTableaus]] +git-tree-sha1 = "66acd57301ea9c79ff92b13b72135af258c141ab" +uuid = "b4bd8bb3-f80f-41d2-9b21-73a655b304b9" +version = "2.0.0" [[deps.OrdinaryDiffEqSDIRK]] deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] -git-tree-sha1 = "ccc883881d5c74e08b28b299bb135c38d3496381" +git-tree-sha1 = "8df990b85ea063a20df3f1b1dddab9d0afec985c" uuid = "2d112036-d095-4a1e-ab9a-08536f3ecdbf" -version = "1.13.0" - -[[deps.OrdinaryDiffEqSSPRK]] -deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static", "StaticArrays"] -git-tree-sha1 = "5cad7fb244bf163df45deff09be5be9f05b32d29" -uuid = "669c94d9-1f4b-4b64-b377-1aa079aa2388" -version = "1.12.0" - -[[deps.OrdinaryDiffEqStabilizedIRK]] -deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqStabilizedRK", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays"] -git-tree-sha1 = "0ad9fef7b61715f706d5a04e039273c4242bbadf" -uuid = "e3e12d00-db14-5390-b879-ac3dd2ef6296" -version = "1.12.0" - -[[deps.OrdinaryDiffEqStabilizedRK]] -deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays"] -git-tree-sha1 = "6382a6caa2cc4488f4b9654ca5f26ad0130bec7b" -uuid = "358294b1-0aab-51c3-aafe-ad5ab194a2ad" -version = "1.9.0" - -[[deps.OrdinaryDiffEqSymplecticRK]] -deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "RecursiveArrayTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "7276967b405c048adb52a090f1c5b1df88501631" -uuid = "fa646aed-7ef9-47eb-84c4-9443fc8cbfa8" -version = "1.12.0" +version = "2.0.0" [[deps.OrdinaryDiffEqTsit5]] -deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static", "TruncatedStacktraces"] -git-tree-sha1 = "6e6173f4d0db8b8136d5fccdcdb7e8abe800a352" +deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "d9cedcfa2cdae8859b4510b9d01ada9852cd6d9d" uuid = "b1df2697-797e-41e3-8120-5422d3b24e4a" -version = "1.10.0" +version = "2.0.0" [[deps.OrdinaryDiffEqVerner]] -deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static", "TruncatedStacktraces"] -git-tree-sha1 = "3bcd3987d1c54d22bcccc1dfdb60b7481746c122" +deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "fb8ae6a290beed2ef61fa2e7571d921e1100c365" uuid = "79d7bb75-1356-48c1-b8c0-6832512096c2" -version = "1.12.0" +version = "2.0.0" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.44.0+1" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] @@ -2179,15 +2028,15 @@ version = "0.5.12" [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "0662b083e11420952f2e62e17eddae7fc07d5997" +git-tree-sha1 = "58e5ed5e386e156bd93e86b305ebd21ac63d2d04" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" -version = "1.57.0+0" +version = "1.57.1+0" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "7d2f8f21da5db6a806faf7b9b292296da42b2810" +git-tree-sha1 = "5d5e0a78e971354b1c7bff0655d11fdc1b0e12c8" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.3" +version = "2.8.4" [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] @@ -2198,7 +2047,7 @@ version = "0.44.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.12.1" +version = "1.11.0" weakdeps = ["REPL"] [deps.Pkg.extensions] @@ -2248,18 +2097,6 @@ git-tree-sha1 = "67afbcbe9e184d6729a92a022147ed4cf972ca7b" uuid = "e409e4f3-bfea-5376-8464-e040bb5c01ab" version = "0.4.7" -[[deps.Polyester]] -deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "16bbc30b5ebea91e9ce1671adc03de2832cff552" -uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.19" - -[[deps.PolyesterWeave]] -deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] -git-tree-sha1 = "645bed98cd47f72f67316fd42fc47dee771aefcd" -uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad" -version = "0.2.2" - [[deps.PolygonOps]] git-tree-sha1 = "77b3d3605fc1cd0b42d95eba87dfcd2bf67d5ff6" uuid = "647866c9-e3ac-4575-94e7-e3d426903924" @@ -2283,9 +2120,9 @@ version = "1.2.0" [[deps.PrecompileTools]] deps = ["Preferences"] -git-tree-sha1 = "07a921781cab75691315adc645096ed5e370cb77" +git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.3.3" +version = "1.2.1" [[deps.Preferences]] deps = ["TOML"] @@ -2305,7 +2142,6 @@ uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" version = "1.11.0" [[deps.Profile]] -deps = ["StyledStrings"] uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79" version = "1.11.0" @@ -2358,9 +2194,9 @@ version = "6.10.2+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9da16da70037ba9d701192e27befedefb91ec284" +git-tree-sha1 = "5e8e8b0ab68215d7a2b14b9921a946fee794749e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.11.2" +version = "2.11.3" [deps.QuadGK.extensions] QuadGKEnzymeExt = "Enzyme" @@ -2379,7 +2215,7 @@ weakdeps = ["Distributions"] QuasiMonteCarloDistributionsExt = "Distributions" [[deps.REPL]] -deps = ["InteractiveUtils", "JuliaSyntaxHighlighting", "Markdown", "Sockets", "StyledStrings", "Unicode"] +deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" version = "1.11.0" @@ -2417,16 +2253,19 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "LinearAlgebra", "PrecompileTools", "RecipesBase", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "18d2a6fd1ea9a8205cadb3a5704f8e51abdd748b" +git-tree-sha1 = "57b6fb3932fc8d1fc911f840d2c9de5fe3ba5008" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.48.0" +version = "4.3.0" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsCUDAExt = "CUDA" RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsFastBroadcastPolyesterExt = ["FastBroadcast", "Polyester"] RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsKernelAbstractionsExt = "KernelAbstractions" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsMooncakeExt = "Mooncake" RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] RecursiveArrayToolsStatisticsExt = "Statistics" @@ -2436,11 +2275,14 @@ version = "3.48.0" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" @@ -2501,9 +2343,9 @@ version = "0.2.1" [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "7257165d5477fd1025f7cb656019dcb6b0512c38" +git-tree-sha1 = "cfcdc949c4660544ab0fdeed169561cb22f835f4" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.17" +version = "0.5.18" [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" @@ -2515,16 +2357,11 @@ git-tree-sha1 = "e24dc23107d426a096d3eae6c165b921e74c18e4" uuid = "fdea26ae-647d-5447-a871-4b548cad5224" version = "3.7.2" -[[deps.SIMDTypes]] -git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" -uuid = "94e857df-77ce-4151-89e5-788b33177be4" -version = "0.1.0" - [[deps.SciMLBase]] -deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Moshi", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "6e8c1bb72b768923d409edface0b3dcf61180d8d" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "Random", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] +git-tree-sha1 = "450a8405f96d0a7c6caabed0852def06ba8c6bf1" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.152.1" +version = "3.7.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2532,7 +2369,6 @@ version = "2.152.1" SciMLBaseDistributionsExt = "Distributions" SciMLBaseEnzymeExt = "Enzyme" SciMLBaseForwardDiffExt = "ForwardDiff" - SciMLBaseMLStyleExt = "MLStyle" SciMLBaseMakieExt = "Makie" SciMLBaseMeasurementsExt = "Measurements" SciMLBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" @@ -2552,7 +2388,6 @@ version = "2.152.1" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - MLStyle = "d8e11817-5142-5d16-987a-aa16d5891078" Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" @@ -2573,9 +2408,9 @@ version = "0.1.3" [[deps.SciMLJacobianOperators]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DifferentiationInterface", "FastClosures", "LinearAlgebra", "SciMLBase", "SciMLOperators"] -git-tree-sha1 = "e96d5e96debf7f80a50d0b976a13dea556ccfd3a" +git-tree-sha1 = "7156a5b51cba1bea33a82a036939ead4131f92bc" uuid = "19f34311-ddf3-4b8b-af20-060888a46c0e" -version = "0.1.12" +version = "0.1.13" [[deps.SciMLLogging]] deps = ["Logging", "LoggingExtras", "Preferences"] @@ -2591,9 +2426,9 @@ version = "1.9.1" [[deps.SciMLOperators]] deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra"] -git-tree-sha1 = "794c760e6aafe9f40dcd7dd30526ea33f0adc8b7" +git-tree-sha1 = "0e34162268883db01c04f988895a80d0659071bb" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "1.15.1" +version = "1.17.0" weakdeps = ["SparseArrays", "StaticArraysCore"] [deps.SciMLOperators.extensions] @@ -2651,10 +2486,10 @@ uuid = "73760f76-fbc4-59ce-8f25-708e95d2df96" version = "0.4.1" [[deps.SimpleBoundaryValueDiffEq]] -deps = ["DiffEqBase", "FiniteDiff", "OrdinaryDiffEqTsit5", "Reexport", "SciMLBase", "SimpleNonlinearSolve"] -git-tree-sha1 = "eb83f8e3f5ffa30f49fb3aa31f69ad8f63cf2edd" +deps = ["DiffEqBase", "FiniteDiff", "OrdinaryDiffEqTsit5", "PrecompileTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve"] +git-tree-sha1 = "7431dcc178b30f0ea751f796a2d68a85ba32c295" uuid = "be0294bd-f90f-4760-ac4e-3421ce2b2da0" -version = "1.2.0" +version = "1.4.1" [[deps.SimpleBufferStream]] git-tree-sha1 = "f305871d2f381d21527c770d4788c06c097c9bc1" @@ -2663,9 +2498,9 @@ version = "1.2.0" [[deps.SimpleNonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "744c3f0fb186ad28376199c1e72ca39d0c614b5d" +git-tree-sha1 = "d688de789b7e643326caf9a1051376dadbcd8873" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "2.11.0" +version = "2.11.1" [deps.SimpleNonlinearSolve.extensions] SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" @@ -2708,7 +2543,7 @@ version = "1.2.2" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -version = "1.12.0" +version = "1.11.0" [[deps.SparseConnectivityTracer]] deps = ["ADTypes", "DocStringExtensions", "FillArrays", "LinearAlgebra", "Random", "SparseArrays"] @@ -2732,28 +2567,31 @@ version = "1.2.1" [[deps.SparseMatrixColorings]] deps = ["ADTypes", "DocStringExtensions", "LinearAlgebra", "PrecompileTools", "Random", "SparseArrays"] -git-tree-sha1 = "1c1be8c6fdfaf9b6c9e156c509e672953b8e6af7" +git-tree-sha1 = "f63d76c7b7c329cf11badd564fd8ba877b09c3fe" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.4.26" +version = "0.4.27" [deps.SparseMatrixColorings.extensions] - SparseMatrixColoringsCUDAExt = "CUDA" + SparseMatrixColoringsCUDAExt = ["CUDA", "cuSPARSE"] SparseMatrixColoringsCliqueTreesExt = "CliqueTrees" SparseMatrixColoringsColorsExt = "Colors" + SparseMatrixColoringsGPUArraysExt = "GPUArrays" SparseMatrixColoringsJuMPExt = ["JuMP", "MathOptInterface"] [deps.SparseMatrixColorings.weakdeps] CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" + GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" JuMP = "4076af6c-e467-56ae-b986-b466b2749572" MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" + cuSPARSE = "b26da814-b3bc-49ef-b0ee-c816305aa060" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "5acc6a41b3082920f79ca3c759acbcecf18a8d78" +git-tree-sha1 = "2700b235561b0335d5bef7097a111dc513b8655e" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.7.1" +version = "2.7.2" weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] @@ -2771,23 +2609,6 @@ git-tree-sha1 = "be1cf4eb0ac528d96f5115b4ed80c26a8d8ae621" uuid = "cae243ae-269e-4f55-b966-ac2d0dc13c15" version = "0.1.2" -[[deps.Static]] -deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools", "SciMLPublic"] -git-tree-sha1 = "49440414711eddc7227724ae6e570c7d5559a086" -uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.3.1" - -[[deps.StaticArrayInterface]] -deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "SciMLPublic", "Static"] -git-tree-sha1 = "aa1ea41b3d45ac449d10477f65e2b40e3197a0d2" -uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.9.0" -weakdeps = ["OffsetArrays", "StaticArrays"] - - [deps.StaticArrayInterface.extensions] - StaticArrayInterfaceOffsetArraysExt = "OffsetArrays" - StaticArrayInterfaceStaticArraysExt = "StaticArrays" - [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] git-tree-sha1 = "246a8bb2e6667f832eea063c3a56aef96429a3db" @@ -2837,12 +2658,6 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] StatsFunsChainRulesCoreExt = "ChainRulesCore" StatsFunsInverseFunctionsExt = "InverseFunctions" -[[deps.StrideArraysCore]] -deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "83151ba8065a73f53ca2ae98bc7274d817aa30f2" -uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.5.8" - [[deps.StringEncodings]] deps = ["Libiconv_jll"] git-tree-sha1 = "b765e46ba27ecf6b44faf70df40c57aa3a547dcb" @@ -2851,9 +2666,9 @@ version = "0.3.7" [[deps.StructArrays]] deps = ["ConstructionBase", "DataAPI", "Tables"] -git-tree-sha1 = "a2c37d815bf00575332b7bd0389f771cb7987214" +git-tree-sha1 = "ad8002667372439f2e3611cfd14097e03fa4bccd" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.7.2" +version = "0.7.3" [deps.StructArrays.extensions] StructArraysAdaptExt = "Adapt" @@ -2881,7 +2696,7 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "7.8.3+2" +version = "7.7.0+0" [[deps.SymbolicIndexingInterface]] deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] @@ -2928,17 +2743,11 @@ deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" version = "1.11.0" -[[deps.ThreadingUtilities]] -deps = ["ManualMemory"] -git-tree-sha1 = "d969183d3d244b6c33796b5ed01ab97328f2db85" -uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" -version = "0.5.5" - [[deps.TiffImages]] -deps = ["ColorTypes", "DataStructures", "DocStringExtensions", "FileIO", "FixedPointNumbers", "IndirectArrays", "Inflate", "Mmap", "OffsetArrays", "PkgVersion", "PrecompileTools", "ProgressMeter", "SIMD", "UUIDs"] -git-tree-sha1 = "08c10bc34f4e7743f530793d0985bf3c254e193d" +deps = ["CodecZstd", "ColorTypes", "DataStructures", "DocStringExtensions", "FileIO", "FixedPointNumbers", "IndirectArrays", "Inflate", "Mmap", "OffsetArrays", "PkgVersion", "PrecompileTools", "ProgressMeter", "SIMD", "UUIDs"] +git-tree-sha1 = "9ca5f1f2d42f80df4b8c9f6ab5a64f438bbd9976" uuid = "731e570b-9d59-4bfa-96dc-6df516fadf69" -version = "0.11.8" +version = "0.11.9" [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] @@ -3045,9 +2854,9 @@ version = "1.1.0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "9cce64c0fdd1960b597ba7ecda2950b5ed957438" +git-tree-sha1 = "b29c22e245d092b8b4e8d3c09ad7baa586d9f573" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.8.2+0" +version = "5.8.3+0" [[deps.Xorg_libICE_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -3123,9 +2932,9 @@ version = "0.9.12+0" [[deps.Xorg_libpciaccess_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "4909eb8f1cbf6bd4b1c30dd18b2ead9019ef2fad" +git-tree-sha1 = "58972370b81423fc546c56a60ed1a009450177c3" uuid = "a65dc6b1-eb27-53a1-bb3e-dea574b5389e" -version = "0.18.1+0" +version = "0.19.0+0" [[deps.Xorg_libxcb_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXau_jll", "Xorg_libXdmcp_jll"] @@ -3183,9 +2992,9 @@ version = "1.4.7+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "00af7ebdc563c9217ecc67776d1bbf037dbcebf4" +git-tree-sha1 = "429722587208f02b1cecbddcd20133df2f1ed796" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.44.0+0" +version = "2.47.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -3214,7 +3023,7 @@ version = "4.3.6+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.3.1+2" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -3242,9 +3051,9 @@ version = "0.2.3+0" [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" +git-tree-sha1 = "850b06095ee71f0135d644ffd8a52850699581ed" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.13.1+0" +version = "3.13.3+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] @@ -3255,7 +3064,7 @@ version = "0.17.4+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.15.0+0" +version = "5.11.0+0" [[deps.libdecor_jll]] deps = ["Artifacts", "Dbus_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pango_jll", "Wayland_jll", "xkbcommon_jll"] @@ -3289,9 +3098,9 @@ version = "1.28.1+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" +git-tree-sha1 = "e51150d5ab85cee6fc36726850f0e627ad2e4aba" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.55+0" +version = "1.6.58+0" [[deps.libsixel_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "libpng_jll"] @@ -3332,7 +3141,7 @@ version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.64.0+1" +version = "1.59.0+0" [[deps.oneTBB_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] @@ -3341,9 +3150,9 @@ uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" version = "2022.0.0+1" [[deps.p7zip_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.7.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] diff --git a/benchmarks/NonStiffBVP/Project.toml b/benchmarks/NonStiffBVP/Project.toml index 6f17b21a6..cc502e857 100644 --- a/benchmarks/NonStiffBVP/Project.toml +++ b/benchmarks/NonStiffBVP/Project.toml @@ -7,6 +7,7 @@ DiffEqDevTools = "f3b72e0c-5b89-59e1-b016-84e28bfd966d" NonlinearSolveFirstOrder = "5959db7a-ea39-4486-b5fe-2dd0bf03d60d" ODEInterface = "54ca160b-1b9f-5127-a996-1867f4bc2a2c" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" +OrdinaryDiffEqLowOrderRK = "1344f307-1e59-4825-a18e-ace9aa3fa4c6" Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" SciMLBenchmarks = "31c91b34-3c75-11e9-0341-95557aab0344" SimpleBoundaryValueDiffEq = "be0294bd-f90f-4760-ac4e-3421ce2b2da0" @@ -16,10 +17,11 @@ BVProblemLibrary = "0.1.6" BenchmarkTools = "1" BoundaryValueDiffEq = "5.16" CairoMakie = "0.12, 0.13, 0.14, 0.15" -DiffEqDevTools = "2.48" -NonlinearSolveFirstOrder = "1" +DiffEqDevTools = "3" +NonlinearSolveFirstOrder = "2" ODEInterface = "0.5" -OrdinaryDiffEq = "6" +OrdinaryDiffEq = "7" +OrdinaryDiffEqLowOrderRK = "2" Plots = "1.4" SciMLBenchmarks = "0.1" SimpleBoundaryValueDiffEq = "1.2" diff --git a/benchmarks/NonStiffBVP/orbital.jmd b/benchmarks/NonStiffBVP/orbital.jmd index 361a81c33..976a5d3fd 100644 --- a/benchmarks/NonStiffBVP/orbital.jmd +++ b/benchmarks/NonStiffBVP/orbital.jmd @@ -7,6 +7,7 @@ This is a benchmark of a small non-stiff BVP. ```julia using BoundaryValueDiffEq, OrdinaryDiffEq, BenchmarkTools +using OrdinaryDiffEqLowOrderRK y0 = [ -4.7763169762853989E+06, @@ -46,12 +47,12 @@ function orbital(dy, y, p, t) end function bc!_generator(resid, sol, init_val) - resid[1] = sol[1][1] - init_val[1] - resid[2] = sol[1][2] - init_val[2] - resid[3] = sol[1][3] - init_val[3] - resid[4] = sol[end][1] - init_val[4] - resid[5] = sol[end][2] - init_val[5] - resid[6] = sol[end][3] - init_val[6] + resid[1] = sol.u[1][1] - init_val[1] + resid[2] = sol.u[1][2] - init_val[2] + resid[3] = sol.u[1][3] - init_val[3] + resid[4] = sol.u[end][1] - init_val[4] + resid[5] = sol.u[end][2] - init_val[5] + resid[6] = sol.u[end][3] - init_val[6] end cur_bc! = (resid, sol, p, t) -> bc!_generator(resid, sol, init_val) resid_f = Array{Float64}(undef, 6) diff --git a/benchmarks/NonStiffDDE/Manifest.toml b/benchmarks/NonStiffDDE/Manifest.toml index 57beaedf0..837db14cb 100644 --- a/benchmarks/NonStiffDDE/Manifest.toml +++ b/benchmarks/NonStiffDDE/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.10" +julia_version = "1.11.9" manifest_format = "2.0" -project_hash = "c82ab5c28e8cf4584750da0f85a392b26517c609" +project_hash = "0610ccd49d866e4a4f2f6a6f4c219877288b8a91" [[deps.ADTypes]] -git-tree-sha1 = "be7ae030256b8ef14a441726c4c37766b90b93a3" +git-tree-sha1 = "bbc22a9a08a0ef6460041086d8a7b27940ed4ffd" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.15.0" +version = "1.22.0" weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] [deps.ADTypes.extensions] @@ -17,9 +17,9 @@ weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] [[deps.Accessors]] deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] -git-tree-sha1 = "3b86719127f50670efe356bc11073d84b4ed7a5d" +git-tree-sha1 = "2eeb2c9bef11013efc6f8f97f32ee59b146b09fb" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.42" +version = "0.1.44" [deps.Accessors.extensions] AxisKeysExt = "AxisKeys" @@ -41,9 +41,9 @@ version = "0.1.42" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "f7817e2e585aa6d924fd714df1e2a84be7896c60" +git-tree-sha1 = "0761717147821d696c9470a7a86364b2fbd22fd8" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.3.0" +version = "4.5.2" weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] @@ -58,28 +58,31 @@ version = "1.1.3" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "9606d7832795cbef89e06a550475be300364a8aa" +git-tree-sha1 = "54f895554d05c83e3dd59f6a396671dae8999573" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.19.0" +version = "7.24.0" [deps.ArrayInterface.extensions] + ArrayInterfaceAMDGPUExt = "AMDGPU" ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceCUDSSExt = "CUDSS" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" ArrayInterfaceReverseDiffExt = "ReverseDiff" ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" [deps.ArrayInterface.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" @@ -87,43 +90,30 @@ version = "7.19.0" ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -[[deps.ArrayLayouts]] -deps = ["FillArrays", "LinearAlgebra"] -git-tree-sha1 = "4e25216b8fea1908a0ce0f5d87368587899f75be" -uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.11.1" -weakdeps = ["SparseArrays"] - - [deps.ArrayLayouts.extensions] - ArrayLayoutsSparseArraysExt = "SparseArrays" - [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +version = "1.11.0" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.BitFlags]] git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" version = "0.1.9" -[[deps.BitTwiddlingConvenienceFunctions]] -deps = ["Static"] -git-tree-sha1 = "f21cfd4950cb9f0587d5067e69405ad2acd27b87" -uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" -version = "0.1.6" - [[deps.BracketingNonlinearSolve]] deps = ["CommonSolve", "ConcreteStructs", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "a9014924595b7a2c1dd14aac516e38fa10ada656" +git-tree-sha1 = "7ad7171d693ae5552ac43862e7f6b61df4471c2b" uuid = "70df07ce-3d50-431d-a3e7-ca6ddb60ac1e" -version = "1.3.0" +version = "1.12.1" weakdeps = ["ChainRulesCore", "ForwardDiff"] [deps.BracketingNonlinearSolve.extensions] @@ -136,34 +126,22 @@ git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" version = "1.0.9+0" -[[deps.CPUSummary]] -deps = ["CpuId", "IfElse", "PrecompileTools", "Static"] -git-tree-sha1 = "5a97e67919535d6841172016c9530fd69494e5ec" -uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" -version = "0.2.6" - [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "fde3bf89aead2e723284a8ff9cdf5b551ed700e8" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d0efe2c6fdcdaa1c161d206aa8b933788397ec71" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.5+0" +version = "1.18.6+0" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "06ee8d1aa558d2833aa799f6f0b31b30cada405f" +git-tree-sha1 = "12177ad6b3cad7fd50c8b3825ce24a99ad61c18f" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.25.2" +version = "1.26.1" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] ChainRulesCoreSparseArraysExt = "SparseArrays" -[[deps.CloseOpenIntervals]] -deps = ["Static", "StaticArrayInterface"] -git-tree-sha1 = "05ba0d07cd4fd8b7a39541e31a7b0254704ea581" -uuid = "fb6a15b2-703c-40df-9091-08a04967cfa9" -version = "0.1.13" - [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" @@ -172,22 +150,20 @@ version = "0.7.8" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "a656525c8b46aa6a1c76891552ed5381bb32ae7b" +git-tree-sha1 = "b0fd3f56fa442f81e0a47815c92245acfaaa4e34" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.30.0" +version = "3.31.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" version = "0.12.1" +weakdeps = ["StyledStrings"] [deps.ColorTypes.extensions] StyledStringsExt = "StyledStrings" - [deps.ColorTypes.weakdeps] - StyledStrings = "f489334b-da3d-4c2e-b8f0-e476e12c162b" - [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" @@ -205,9 +181,9 @@ uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" version = "0.13.1" [[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" +version = "0.2.6" [[deps.CommonSubexpressions]] deps = ["MacroTools"] @@ -215,16 +191,11 @@ git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.1" -[[deps.CommonWorldInvalidations]] -git-tree-sha1 = "ae52d1c52048455e85a387fbee9be553ec2b68d0" -uuid = "f70d9fcc-98c5-4d4a-abd7-e4cdeebd8ca8" -version = "1.0.0" - [[deps.Compat]] deps = ["TOML", "UUIDs"] -git-tree-sha1 = "3a3dfb30697e96a440e4149c8c51bf32f818c0f3" +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.17.0" +version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -251,15 +222,15 @@ version = "0.2.3" [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "d9d26935a0bcffc87d2613ce14c527c99fc543fd" +git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.5.0" +version = "2.5.1" [[deps.Conda]] deps = ["Downloads", "JSON", "VersionParsing"] -git-tree-sha1 = "b19db3927f0db4151cb86d073689f2428e524576" +git-tree-sha1 = "8f06b0cfa4c514c7b9546756dbae91fcfbc92dc9" uuid = "8f4d0f93-b110-5947-807f-2305c1781a2d" -version = "1.10.2" +version = "1.10.3" [[deps.ConstructionBase]] git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" @@ -281,22 +252,11 @@ git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" version = "0.6.3" -[[deps.CpuId]] -deps = ["Markdown"] -git-tree-sha1 = "fcbb72b032692610bfbdb15018ac16a36cf2e406" -uuid = "adafc99b-e345-5852-983c-f28acb93d879" -version = "0.3.1" - -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" - [[deps.DDEProblemLibrary]] deps = ["DiffEqBase"] -git-tree-sha1 = "30bfb0c9bf8cf3b2a97b331984a72fadf9a77aa5" +git-tree-sha1 = "4e71dd9d171e68ef36f37947adc51166cad2ec44" uuid = "f42792ee-6ffc-4e2a-ae83-8ee2f22de800" -version = "0.1.2" +version = "0.1.5" [[deps.DataAPI]] git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" @@ -304,10 +264,10 @@ uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" version = "1.16.0" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "4e1fe97fdaed23e9dc21d4d664bea76b65fc50a0" +deps = ["OrderedCollections"] +git-tree-sha1 = "e86f4a2805f7f19bec5129bc9150c38208e5dc23" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.22" +version = "0.19.4" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -317,6 +277,7 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" [[deps.Dbus_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] @@ -325,10 +286,18 @@ uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" version = "1.16.2+0" [[deps.DelayDiffEq]] -deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "LinearAlgebra", "Logging", "OrdinaryDiffEq", "OrdinaryDiffEqCore", "OrdinaryDiffEqDefault", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqRosenbrock", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SimpleUnPack", "SymbolicIndexingInterface"] -git-tree-sha1 = "8b416f6b1f9ef8df4c13dd0fe6c191752722b36f" +deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "FastBroadcast", "ForwardDiff", "LinearAlgebra", "Logging", "OrdinaryDiffEqCore", "OrdinaryDiffEqDefault", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqFunctionMap", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqRosenbrock", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SimpleNonlinearSolve", "SymbolicIndexingInterface"] +git-tree-sha1 = "d1200b6bdf69afafba5a67b51da0f1207f9603c0" uuid = "bcd4f6db-9728-5f36-b5f7-82caef46ccdb" -version = "5.53.1" +version = "6.0.0" + + [deps.DelayDiffEq.extensions] + DelayDiffEqStochasticDiffEqCoreExt = ["StochasticDiffEqCore", "DiffEqNoiseProcess", "Random"] + + [deps.DelayDiffEq.weakdeps] + DiffEqNoiseProcess = "77a26b50-5914-5dd7-bc55-306e6241c503" + Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" + StochasticDiffEqCore = "19c5a474-6cd1-4a5f-be79-46dc34e54d7f" [[deps.DelimitedFiles]] deps = ["Mmap"] @@ -337,16 +306,17 @@ uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" version = "1.9.1" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "e9b34e0eb3443492f396c97e7fed08630752a4f2" +deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "2d7ca58e6ce2d1f7a435773d73d111741e283070" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.177.2" +version = "7.1.0" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" DiffEqBaseChainRulesCoreExt = "ChainRulesCore" - DiffEqBaseDistributionsExt = "Distributions" + DiffEqBaseDynamicQuantitiesExt = "DynamicQuantities" DiffEqBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] + DiffEqBaseFlexUnitsExt = "FlexUnits" DiffEqBaseForwardDiffExt = ["ForwardDiff"] DiffEqBaseGTPSAExt = "GTPSA" DiffEqBaseGeneralizedGeneratedExt = "GeneralizedGenerated" @@ -363,7 +333,9 @@ version = "6.177.2" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" + DynamicQuantities = "06fc5a27-2a28-4c7c-a15d-362465fb6821" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FlexUnits = "76e01b6b-c995-4ce6-8559-91e72a3d4e95" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" GeneralizedGenerated = "6b9d7cbe-bcb9-11e9-073f-15a7a543e2eb" @@ -378,20 +350,22 @@ version = "6.177.2" [[deps.DiffEqDevTools]] deps = ["DiffEqBase", "DiffEqNoiseProcess", "Distributed", "LinearAlgebra", "Logging", "NLsolve", "RecipesBase", "RecursiveArrayTools", "RootedTrees", "SciMLBase", "Statistics", "StructArrays"] -git-tree-sha1 = "53aa030c02c786270542debbb577b53f6383796b" +git-tree-sha1 = "cc290a2fdad4d332ba6a88953eaf5800687ccd49" uuid = "f3b72e0c-5b89-59e1-b016-84e28bfd966d" -version = "2.48.0" +version = "3.0.0" [[deps.DiffEqNoiseProcess]] -deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "516d553f5deee7c55b2945b5edf05b6542837887" +deps = ["CommonSolve", "DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "PoissonRandom", "QuadGK", "Random", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] +git-tree-sha1 = "5b5fe6eb9e994ff0de4e84fe149b03c706fd6403" uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" -version = "5.24.1" +version = "5.31.0" [deps.DiffEqNoiseProcess.extensions] + DiffEqNoiseProcessOptimExt = "Optim" DiffEqNoiseProcessReverseDiffExt = "ReverseDiff" [deps.DiffEqNoiseProcess.weakdeps] + Optim = "429524aa-4258-5aef-a3af-852621145aeb" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" [[deps.DiffResults]] @@ -408,9 +382,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "c092fd1dd0d94e609cd0d29e13897b2825c804bb" +git-tree-sha1 = "d0250552e42bf7cc36479fd38a6e30004c9e8c2b" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.7.2" +version = "0.7.17" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -420,7 +394,7 @@ version = "0.7.2" DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] - DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGPUArraysCoreExt = ["GPUArraysCore", "Adapt"] DifferentiationInterfaceGTPSAExt = "GTPSA" DifferentiationInterfaceMooncakeExt = "Mooncake" DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] @@ -434,6 +408,7 @@ version = "0.7.2" DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] [deps.DifferentiationInterface.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" @@ -470,12 +445,13 @@ weakdeps = ["ChainRulesCore", "SparseArrays"] [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "3e6d038b77f22791b8e3472b7c633acea1ecac06" +git-tree-sha1 = "e421c1938fafab0165b04dc1a9dbe2a26272952c" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.120" +version = "0.25.125" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -498,18 +474,19 @@ uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.6.0" [[deps.EnumX]] -git-tree-sha1 = "bddad79635af6aec424f53ed8aad5d7555dc6f00" +git-tree-sha1 = "c49898e8438c828577f04b92fc9368c388ac783c" uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.5" +version = "1.0.7" [[deps.EnzymeCore]] -git-tree-sha1 = "8272a687bca7b5c601c0c24fc0c71bff10aafdfd" +git-tree-sha1 = "c6ee69ee502060982d12dbaaf3d8fcb4e835a0d1" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.8.12" -weakdeps = ["Adapt"] +version = "0.8.20" +weakdeps = ["Adapt", "ChainRulesCore"] [deps.EnzymeCore.extensions] AdaptExt = "Adapt" + EnzymeCoreChainRulesCoreExt = "ChainRulesCore" [[deps.EpollShim_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -525,63 +502,50 @@ version = "0.1.11" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d55dffd9ae73ff72f1c0482454dcf2ec6c6c4a63" +git-tree-sha1 = "8f05e9a2e7c2e3eb524102bb2926c5743c07fbe1" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.6.5+0" - -[[deps.ExponentialUtilities]] -deps = ["Adapt", "ArrayInterface", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "PrecompileTools", "Printf", "SparseArrays", "libblastrampoline_jll"] -git-tree-sha1 = "cae251c76f353e32d32d76fae2fea655eab652af" -uuid = "d4d017d3-3776-5f7e-afef-a10c40355c18" -version = "1.27.0" -weakdeps = ["StaticArrays"] - - [deps.ExponentialUtilities.extensions] - ExponentialUtilitiesStaticArraysExt = "StaticArrays" +version = "2.8.0+0" [[deps.ExprTools]] git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" version = "0.1.10" -[[deps.ExproniconLite]] -git-tree-sha1 = "c13f0b150373771b0fdc1713c97860f8df12e6c2" -uuid = "55351af7-c7e9-48d6-89ff-24e801d99491" -version = "0.10.14" - [[deps.FFMPEG]] deps = ["FFMPEG_jll"] -git-tree-sha1 = "53ebe7511fa11d33bec688a9178fac4e49eeee00" +git-tree-sha1 = "95ecf07c2eea562b5adbd0696af6db62c0f52560" uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.2" +version = "0.4.5" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libva_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "cac41ca6b2d399adfc95e51240566f8a60a80806" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.4+1" +version = "8.1.0+0" [[deps.FastBroadcast]] -deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "ab1b34570bcdf272899062e1a56285a53ecaae08" +deps = ["ArrayInterface", "LinearAlgebra"] +git-tree-sha1 = "7feeed2c9a7fa272189a5561bebf0c4ccaedb6ec" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.3.5" +version = "1.3.2" + + [deps.FastBroadcast.extensions] + FastBroadcastPolyesterExt = "Polyester" + FastBroadcastStaticExt = "Static" + + [deps.FastBroadcast.weakdeps] + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" + Static = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" version = "0.3.2" -[[deps.FastGaussQuadrature]] -deps = ["LinearAlgebra", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "fd923962364b645f3719855c88f7074413a6ad92" -uuid = "442a2c76-b920-505d-bb47-c5924d526838" -version = "1.0.2" - [[deps.FastPower]] -git-tree-sha1 = "5f7afd4b1a3969dc34d692da2ed856047325b06e" +git-tree-sha1 = "862831f78c7a48681a074ecc9aac09f2de563f71" uuid = "a4df4552-cc26-4903-aec0-212e50a0e84b" -version = "1.1.3" +version = "1.3.1" [deps.FastPower.extensions] FastPowerEnzymeExt = "Enzyme" @@ -603,24 +567,26 @@ version = "1.1.3" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" +version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] -git-tree-sha1 = "6a70198746448456524cb442b8af316927ff3e1a" +git-tree-sha1 = "2f979084d1e13948a3352cf64a25df6bd3b4dca3" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.13.0" -weakdeps = ["PDMats", "SparseArrays", "Statistics"] +version = "1.16.0" +weakdeps = ["PDMats", "SparseArrays", "StaticArrays", "Statistics"] [deps.FillArrays.extensions] FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" + FillArraysStaticArraysExt = "StaticArrays" FillArraysStatisticsExt = "Statistics" [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "f089ab1f834470c525562030c8cfde4025d5e915" +git-tree-sha1 = "f7017a4f337f8df189fcce98e32b67a1298a2115" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.27.0" +version = "2.31.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -642,9 +608,9 @@ version = "0.8.5" [[deps.Fontconfig_jll]] deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] -git-tree-sha1 = "301b5d5d731a0654825f1f2e906990f7141a106b" +git-tree-sha1 = "f85dac9a96a01087df6e3a749840015a0ca3817d" uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.16.0+0" +version = "2.17.1+0" [[deps.Format]] git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" @@ -653,9 +619,9 @@ version = "1.3.7" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "910febccb28d493032495b7009dce7d7f7aee554" +git-tree-sha1 = "cddeab6487248a39dae1a960fff0ac17b2a28888" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "1.0.1" +version = "1.3.3" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -663,9 +629,9 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "2c5512e11c791d1baed2049c5652441b28fc6a31" +git-tree-sha1 = "70329abc09b886fd2c5d94ad2d9527639c421e3e" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.4+0" +version = "2.14.3+1" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -679,20 +645,30 @@ uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" version = "1.1.3" [[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +deps = ["FunctionWrappers", "PrecompileTools", "TruncatedStacktraces"] +git-tree-sha1 = "c1b0c3a166a2a393257aa888787ca817532e14ce" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" +version = "1.8.0" + + [deps.FunctionWrappersWrappers.extensions] + FunctionWrappersWrappersEnzymeExt = ["Enzyme", "EnzymeCore"] + FunctionWrappersWrappersMooncakeExt = "Mooncake" + + [deps.FunctionWrappersWrappers.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" +version = "1.11.0" [[deps.GLFW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] -git-tree-sha1 = "fcb0584ff34e25155876418979d4c8971243bb89" +git-tree-sha1 = "9e0fb9e54594c47f278d75063980e43066e26e20" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.4.0+2" +version = "3.4.1+1" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -702,21 +678,19 @@ version = "0.2.0" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Qt6Wayland_jll", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] -git-tree-sha1 = "1828eb7275491981fa5f1752a5e126e8f26f8741" +git-tree-sha1 = "44716a1a667cb867ee0e9ec8edc31c3e4aa5afdc" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.73.17" +version = "0.73.24" +weakdeps = ["IJulia"] + + [deps.GR.extensions] + IJuliaExt = "IJulia" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "27299071cc29e409488ada41ec7643e0ab19091f" +git-tree-sha1 = "be8a1b8065959e24fdc1b51402f39f3b6f0f6653" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.73.17+0" - -[[deps.GenericSchur]] -deps = ["LinearAlgebra", "Printf"] -git-tree-sha1 = "f88e0ba1f6b42121a7c1dfe93a9687d8e164c91b" -uuid = "c145ed77-6b09-5dd9-b285-bf645a82121e" -version = "0.5.5" +version = "0.73.24+0" [[deps.GettextRuntime_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll"] @@ -724,23 +698,35 @@ git-tree-sha1 = "45288942190db7c5f760f59c04495064eedf9340" uuid = "b0724c58-0f36-5564-988d-3bb0596ebc4a" version = "0.22.4+0" +[[deps.Ghostscript_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Zlib_jll"] +git-tree-sha1 = "38044a04637976140074d0b0621c1edf0eb531fd" +uuid = "61579ee1-b43e-5ca0-a5da-69d92c66a64b" +version = "9.55.1+0" + [[deps.Git]] -deps = ["Git_jll", "JLLWrappers", "OpenSSH_jll"] -git-tree-sha1 = "2230a9cc32394b11a3b3aa807a382e3bbab1198c" +deps = ["Git_LFS_jll", "Git_jll", "JLLWrappers", "OpenSSH_jll"] +git-tree-sha1 = "824a1890086880696fc908fe12a17bcf61738bd8" uuid = "d7ba0133-e1db-5d97-8f8c-041e4b3a1eb2" -version = "1.4.0" +version = "1.5.0" + +[[deps.Git_LFS_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "bb8471f313ed941f299aa53d32a94ab3bee08844" +uuid = "020c3dae-16b3-5ae5-87b3-4cb189e250b2" +version = "3.7.0+0" [[deps.Git_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "b981ed24de5855f20fce5b8cb767c179f93e4268" +git-tree-sha1 = "0dd4cfb426924210c8f42742751cbde74b27bfa3" uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb" -version = "2.50.0+0" +version = "2.54.0+0" [[deps.Glib_jll]] deps = ["Artifacts", "GettextRuntime_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "35fbd0cefb04a516104b8e183ce0df11b70a3f1a" +git-tree-sha1 = "24f6def62397474a297bfcec22384101609142ed" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.84.3+0" +version = "2.86.3+0" [[deps.Graphite2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -755,9 +741,9 @@ version = "1.0.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "PrecompileTools", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "ed5e9c58612c4e081aecdb6e1a479e18462e041e" +git-tree-sha1 = "51059d23c8bb67911a2e6fd5130229113735fc7e" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.17" +version = "1.11.0" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll"] @@ -778,25 +764,29 @@ uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" version = "0.3.28" [[deps.IJulia]] -deps = ["Base64", "Conda", "Dates", "InteractiveUtils", "JSON", "Logging", "Markdown", "MbedTLS", "Pkg", "Printf", "REPL", "Random", "SoftGlobalScope", "UUIDs", "ZMQ"] -git-tree-sha1 = "9e60d328aa8060368d6dadd24b644d0ebaf0c1cb" +deps = ["Base64", "Conda", "Dates", "InteractiveUtils", "Logging", "Markdown", "Pkg", "PrecompileTools", "Printf", "REPL", "Random", "SHA", "Sockets", "UUIDs", "ZMQ"] +git-tree-sha1 = "102656c4efc9737f892e1bca7e66ae374c650740" uuid = "7073ff75-c697-5162-941a-fcdaad2a7d2a" -version = "1.29.0" +version = "1.34.4" -[[deps.IfElse]] -git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" -uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" -version = "0.1.1" + [deps.IJulia.extensions] + IJuliaPythonCallExt = "PythonCall" + IJuliaReviseExt = "Revise" + + [deps.IJulia.weakdeps] + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + Revise = "295af30f-e4ad-537b-8983-00126c2a3abe" [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] -git-tree-sha1 = "0f14a5456bdc6b9731a5682f439a672750a09e48" +git-tree-sha1 = "ec1debd61c300961f98064cfb21287613ad7f303" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2025.0.4+0" +version = "2025.2.0+0" [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" +version = "1.11.0" [[deps.InverseFunctions]] git-tree-sha1 = "a779299d77cd080bf77b97535acecd73e1c5e5cb" @@ -809,9 +799,9 @@ weakdeps = ["Dates", "Test"] InverseFunctionsTestExt = "Test" [[deps.IrrationalConstants]] -git-tree-sha1 = "e2222959fbc6c19554dc15174c81bf7bf3aa691c" +git-tree-sha1 = "b2d91fe939cae05960e760110b328288867b5758" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.4" +version = "0.2.6" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -826,9 +816,9 @@ version = "0.1.11" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "a007feb38b422fbdab534406aeca1b86823cb4d6" +git-tree-sha1 = "0533e564aae234aff59ab625543145446d8b6ec2" uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.7.0" +version = "1.7.1" [[deps.JSON]] deps = ["Dates", "Mmap", "Parsers", "Unicode"] @@ -836,23 +826,17 @@ git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.4" -[[deps.Jieko]] -deps = ["ExproniconLite"] -git-tree-sha1 = "2f05ed29618da60c06a87e9c033982d4f71d0b6c" -uuid = "ae98c720-c025-4a4a-838c-29b094483192" -version = "0.2.1" - [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "eac1206917768cb54957c65a615460d87b455fc1" +git-tree-sha1 = "c0c9b76f3520863909825cbecdef58cd63de705a" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.1.1+0" +version = "3.1.5+0" [[deps.Krylov]] deps = ["LinearAlgebra", "Printf", "SparseArrays"] -git-tree-sha1 = "b94257a1a8737099ca40bc7271a8b374033473ed" +git-tree-sha1 = "c4d19f51afc7ba2afbe32031b8f2d21b11c9e26e" uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" -version = "0.10.1" +version = "0.10.6" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -862,9 +846,9 @@ version = "3.100.3+0" [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "aaafe88dccbd957a8d82f7d05be9b69172e0cee3" +git-tree-sha1 = "17b94ecafcfa45e8360a4fc9ca6b583b049e4e37" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "4.0.1+0" +version = "4.1.0+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -872,28 +856,22 @@ git-tree-sha1 = "eb62a3deb62fc6d8822c0c4bef73e4412419c5d8" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" version = "18.1.8+0" -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "1c602b1127f4751facb671441ca72715cc95938a" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.3+0" - [[deps.LaTeXStrings]] git-tree-sha1 = "dda21b8cbd6a6c40d9d02a73230f9d70fed6918c" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" version = "1.4.0" [[deps.LabelledArrays]] -deps = ["ArrayInterface", "ChainRulesCore", "ForwardDiff", "LinearAlgebra", "MacroTools", "PreallocationTools", "RecursiveArrayTools", "StaticArrays"] -git-tree-sha1 = "787746e59dc50568695927afd7ffb09e294382c8" +deps = ["ArrayInterface", "ChainRulesCore", "ForwardDiff", "LinearAlgebra", "MacroTools", "PreallocationTools", "PrecompileTools", "RecursiveArrayTools", "StaticArrays"] +git-tree-sha1 = "4bdcd02a7dc20b5e6f4a1c9b91278c05a76899f2" uuid = "2ee39098-c373-598a-b85f-a56591580800" -version = "1.16.1" +version = "1.19.0" [[deps.Latexify]] -deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] -git-tree-sha1 = "4f34eaabe49ecb3fb0d58d6015e32fd31a733199" +deps = ["Format", "Ghostscript_jll", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] +git-tree-sha1 = "44f93c47f9cd6c7e431f2f2091fcba8f01cd7e8f" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.8" +version = "0.16.10" [deps.Latexify.extensions] DataFramesExt = "DataFrames" @@ -907,33 +885,10 @@ version = "0.16.8" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" tectonic_jll = "d7dd28d6-a5e6-559c-9131-7eb760cdacc5" -[[deps.LayoutPointers]] -deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "a9eaadb366f5493a5654e843864c13d8b107548c" -uuid = "10f19ff3-798f-405d-979b-55457f8fc047" -version = "0.1.17" - -[[deps.LazyArrays]] -deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "866ce84b15e54d758c11946aacd4e5df0e60b7a3" -uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "2.6.1" - - [deps.LazyArrays.extensions] - LazyArraysBandedMatricesExt = "BandedMatrices" - LazyArraysBlockArraysExt = "BlockArrays" - LazyArraysBlockBandedMatricesExt = "BlockBandedMatrices" - LazyArraysStaticArraysExt = "StaticArrays" - - [deps.LazyArrays.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" +version = "1.11.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] @@ -943,16 +898,17 @@ version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.4.0+0" +version = "8.6.0+0" [[deps.LibGit2]] deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +version = "1.11.0" [[deps.LibGit2_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.6.4+0" +version = "1.7.2+0" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] @@ -961,6 +917,7 @@ version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" +version = "1.11.0" [[deps.Libffi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -982,85 +939,113 @@ version = "1.18.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a31572773ac1b745e0343fe5e2c8ddda7a37e997" +git-tree-sha1 = "cc3ad4faf30015a3e8094c9b5b7f19e85bdf2386" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.41.0+0" +version = "2.42.0+0" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "4ab7581296671007fc33f07a721631b8855f4b1d" +git-tree-sha1 = "f04133fe05eff1667d2054c53d59f9122383fe05" uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.7.1+0" +version = "4.7.2+0" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "321ccef73a96ba828cd51f2ab5b9f917fa73945a" +git-tree-sha1 = "d620582b1f0cbe2c72dd1d5bd195a9ce73370ab1" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.41.0+0" +version = "2.42.0+0" [[deps.LineSearch]] -deps = ["ADTypes", "CommonSolve", "ConcreteStructs", "FastClosures", "LinearAlgebra", "MaybeInplace", "SciMLBase", "SciMLJacobianOperators", "StaticArraysCore"] -git-tree-sha1 = "97d502765cc5cf3a722120f50da03c2474efce04" +deps = ["ADTypes", "CommonSolve", "ConcreteStructs", "FastClosures", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "SciMLBase", "SciMLJacobianOperators", "StaticArraysCore"] +git-tree-sha1 = "fd58a77c92e7c8f1db25c9839127d52943a49349" uuid = "87fe0de2-c867-4266-b59a-2f0a94fc965b" -version = "0.1.4" +version = "0.1.9" weakdeps = ["LineSearches"] [deps.LineSearch.extensions] LineSearchLineSearchesExt = "LineSearches" [[deps.LineSearches]] -deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"] -git-tree-sha1 = "4adee99b7262ad2a1a4bbbc59d993d24e55ea96f" +deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Printf"] +git-tree-sha1 = "9ea3422d03222c6de679934d1c08f0a99405aa03" uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.4.0" +version = "7.5.1" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +version = "1.11.0" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "062c11f1d84ffc80d00fddaa515f7e37e8e9f9d5" +deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] +git-tree-sha1 = "42b5cb44317e89ef75dd841c9c8eba9045bf9ff0" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "3.18.2" +version = "3.75.0" [deps.LinearSolve.extensions] + LinearSolveAMDGPUExt = "AMDGPU" + LinearSolveAlgebraicMultigridExt = "AlgebraicMultigrid" + LinearSolveBLISExt = ["blis_jll", "LAPACK_jll"] LinearSolveBandedMatricesExt = "BandedMatrices" LinearSolveBlockDiagonalsExt = "BlockDiagonals" LinearSolveCUDAExt = "CUDA" LinearSolveCUDSSExt = "CUDSS" - LinearSolveEnzymeExt = "EnzymeCore" + LinearSolveCUSOLVERRFExt = ["CUSOLVERRF", "SparseArrays"] + LinearSolveChainRulesCoreExt = "ChainRulesCore" + LinearSolveCliqueTreesExt = ["CliqueTrees", "SparseArrays"] + LinearSolveElementalExt = "Elemental" + LinearSolveEnzymeExt = ["EnzymeCore", "SparseArrays"] LinearSolveFastAlmostBandedMatricesExt = "FastAlmostBandedMatrices" LinearSolveFastLapackInterfaceExt = "FastLapackInterface" LinearSolveForwardDiffExt = "ForwardDiff" + LinearSolveGinkgoExt = ["Ginkgo", "SparseArrays"] LinearSolveHYPREExt = "HYPRE" LinearSolveIterativeSolversExt = "IterativeSolvers" LinearSolveKernelAbstractionsExt = "KernelAbstractions" LinearSolveKrylovKitExt = "KrylovKit" LinearSolveMetalExt = "Metal" + LinearSolveMooncakeExt = "Mooncake" + LinearSolvePETScCSRExt = ["PETSc", "SparseArrays", "SparseMatricesCSR"] + LinearSolvePETScExt = ["PETSc", "SparseArrays"] + LinearSolvePETScMPIExt = ["PETSc", "PartitionedArrays", "SparseArrays", "SparseMatricesCSR"] + LinearSolveParUExt = ["ParU_jll", "SparseArrays"] LinearSolvePardisoExt = ["Pardiso", "SparseArrays"] LinearSolveRecursiveFactorizationExt = "RecursiveFactorization" LinearSolveSparseArraysExt = "SparseArrays" LinearSolveSparspakExt = ["SparseArrays", "Sparspak"] [deps.LinearSolve.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + AlgebraicMultigrid = "2169fc97-5a83-5252-b627-83903c6c433c" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + CUSOLVERRF = "a8cc9031-bad2-4722-94f5-40deabb4245c" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" + Elemental = "902c3f28-d1ec-5e7e-8399-a24c3845ee38" EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" FastLapackInterface = "29a986be-02c6-4525-aec4-84b980013641" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Ginkgo = "4c8bd3c9-ead9-4b5e-a625-08f1338ba0ec" HYPRE = "b5ffcf37-a2bd-41ab-a3da-4bd9bc8ad771" IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" + LAPACK_jll = "51474c39-65e3-53ba-86ba-03b1b862ec14" Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + PETSc = "ace2c81b-2b5f-4b1e-a30d-d662738edfe0" + ParU_jll = "9e0b026c-e8ce-559c-a2c4-6a3d5c955bc9" Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" + PartitionedArrays = "5a9dfac6-5c52-46f7-8278-5e2210713be9" RecursiveFactorization = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseMatricesCSR = "a0a7dd2c-ebf4-11e9-1f05-cf50bc540ca1" Sparspak = "e56a9233-b9d6-4f03-8d0f-1825330902ac" + blis_jll = "6136c539-28a5-5bf0-87cc-b183200dce32" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] @@ -1080,32 +1065,29 @@ version = "0.3.29" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" +version = "1.11.0" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] -git-tree-sha1 = "f02b56007b064fbfddb4c9cd60161b6dd0f40df3" +git-tree-sha1 = "f00544d95982ea270145636c181ceda21c4e2575" uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.1.0" +version = "1.2.0" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] -git-tree-sha1 = "5de60bc6cb3899cd318d80d627560fae2e2d99ae" +git-tree-sha1 = "282cadc186e7b2ae0eeadbd7a4dffed4196ae2aa" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2025.0.1+1" +version = "2025.2.0+0" [[deps.MacroTools]] git-tree-sha1 = "1e0228a030642014fe5cfe68c2c0a818f9e3f522" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" version = "0.5.16" -[[deps.ManualMemory]] -git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" -uuid = "d125e4d3-2237-4719-b19c-fa641b8a4667" -version = "0.1.8" - [[deps.Markdown]] deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +version = "1.11.0" [[deps.MaybeInplace]] deps = ["ArrayInterface", "LinearAlgebra", "MacroTools"] @@ -1119,19 +1101,19 @@ weakdeps = ["SparseArrays"] [[deps.MbedTLS]] deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] -git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" +git-tree-sha1 = "8785729fa736197687541f7053f6d8ab7fc44f92" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.9" +version = "1.1.10" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+1" +version = "2.28.6+0" [[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" +git-tree-sha1 = "b513cedd20d9c914783d8ad83d08120702bf2c77" uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" +version = "0.3.3" [[deps.Missings]] deps = ["DataAPI"] @@ -1141,16 +1123,11 @@ version = "1.2.0" [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.Moshi]] -deps = ["ExproniconLite", "Jieko"] -git-tree-sha1 = "53f817d3e84537d84545e0ad749e483412dd6b2a" -uuid = "2e0e35c7-a2e4-4343-998d-7ef72827ed2d" -version = "0.3.7" +version = "1.11.0" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2023.1.10" +version = "2023.12.12" [[deps.MuladdMacro]] git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" @@ -1186,10 +1163,10 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.NonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DiffEqBase", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseMatrixColorings", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "aeb6fb02e63b4d4f90337ed90ce54ceb4c0efe77" +deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SciMLLogging", "Setfield", "SimpleNonlinearSolve", "StaticArraysCore", "SymbolicIndexingInterface"] +git-tree-sha1 = "ae0b0f875e4dfda538ab6977ec7939126ee9a1fe" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "4.9.0" +version = "4.19.0" [deps.NonlinearSolve.extensions] NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" @@ -1198,7 +1175,7 @@ version = "4.9.0" NonlinearSolveMINPACKExt = "MINPACK" NonlinearSolveNLSolversExt = "NLSolvers" NonlinearSolveNLsolveExt = ["NLsolve", "LineSearches"] - NonlinearSolvePETScExt = ["PETSc", "MPI"] + NonlinearSolvePETScExt = ["PETSc", "MPI", "SparseArrays"] NonlinearSolveSIAMFANLEquationsExt = "SIAMFANLEquations" NonlinearSolveSpeedMappingExt = "SpeedMapping" NonlinearSolveSundialsExt = "Sundials" @@ -1214,54 +1191,63 @@ version = "4.9.0" NLsolve = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" PETSc = "ace2c81b-2b5f-4b1e-a30d-d662738edfe0" SIAMFANLEquations = 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"SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] +git-tree-sha1 = "a19a5df29ef2b197499fc631fa1a59385ae15262" uuid = "be0214bd-f91f-a760-ac4e-3421ce2b2da0" -version = "1.12.0" +version = "2.25.0" [deps.NonlinearSolveBase.extensions] NonlinearSolveBaseBandedMatricesExt = "BandedMatrices" - NonlinearSolveBaseDiffEqBaseExt = "DiffEqBase" + NonlinearSolveBaseChainRulesCoreExt = "ChainRulesCore" + NonlinearSolveBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] NonlinearSolveBaseForwardDiffExt = "ForwardDiff" NonlinearSolveBaseLineSearchExt = "LineSearch" NonlinearSolveBaseLinearSolveExt = "LinearSolve" + NonlinearSolveBaseMooncakeExt = "Mooncake" + NonlinearSolveBaseReverseDiffExt = "ReverseDiff" NonlinearSolveBaseSparseArraysExt = "SparseArrays" NonlinearSolveBaseSparseMatrixColoringsExt = "SparseMatrixColorings" + NonlinearSolveBaseTrackerExt = "Tracker" 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"StaticArraysCore"] -git-tree-sha1 = "9c8cd0a986518ba317af263549b48e34ac8f776d" +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConcreteStructs", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLJacobianOperators", "Setfield", "StaticArraysCore"] +git-tree-sha1 = "ce68820a4f421fb5bee7ec4dcf875aff33886bfb" uuid = "5959db7a-ea39-4486-b5fe-2dd0bf03d60d" -version = "1.5.0" +version = "2.1.1" [[deps.NonlinearSolveQuasiNewton]] -deps = ["ArrayInterface", "CommonSolve", "ConcreteStructs", "DiffEqBase", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLOperators", "StaticArraysCore"] -git-tree-sha1 = "e3888bdbab6e0bfadbc3164ef4595e40e7b7e954" +deps = ["ArrayInterface", "CommonSolve", "ConcreteStructs", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLOperators", "StaticArraysCore"] +git-tree-sha1 = "538432ca1aea8bf63db02929bf870501f8a7c64c" uuid = "9a2c21bd-3a47-402d-9113-8faf9a0ee114" -version = "1.6.0" +version = "1.13.1" weakdeps = ["ForwardDiff"] [deps.NonlinearSolveQuasiNewton.extensions] NonlinearSolveQuasiNewtonForwardDiffExt = "ForwardDiff" [[deps.NonlinearSolveSpectralMethods]] -deps = ["CommonSolve", "ConcreteStructs", "DiffEqBase", "LineSearch", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "3398222199e4b9ca0b5840907fb509f28f1a2fdc" +deps = ["CommonSolve", "ConcreteStructs", "LineSearch", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] +git-tree-sha1 = "a3781e12becdf0ce5520bd97ec617e879bf4e9f2" uuid = "26075421-4e9a-44e1-8bd1-420ed7ad02b2" -version = "1.2.0" +version = "1.7.1" weakdeps = ["ForwardDiff"] [deps.NonlinearSolveSpectralMethods.extensions] @@ -1276,7 +1262,7 @@ version = "1.3.6+0" [[deps.OpenBLAS_jll]] 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"LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "d9cedcfa2cdae8859b4510b9d01ada9852cd6d9d" uuid = "b1df2697-797e-41e3-8120-5422d3b24e4a" -version = "1.1.0" +version = "2.0.0" [[deps.OrdinaryDiffEqVerner]] -deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "Static", "TruncatedStacktraces"] -git-tree-sha1 = "08f2d3be30874b6e2e937a06b501fb9811f7d8bd" +deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "fb8ae6a290beed2ef61fa2e7571d921e1100c365" uuid = "79d7bb75-1356-48c1-b8c0-6832512096c2" -version = "1.2.0" +version = "2.0.0" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ 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"PrecompileTools", "UUIDs"] -git-tree-sha1 = "7d2f8f21da5db6a806faf7b9b292296da42b2810" +git-tree-sha1 = "5d5e0a78e971354b1c7bff0655d11fdc1b0e12c8" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.3" +version = "2.8.4" [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] @@ -1560,9 +1421,13 @@ uuid = "30392449-352a-5448-841d-b1acce4e97dc" version = "0.44.2+0" [[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.10.0" +version = "1.11.0" +weakdeps = ["REPL"] + + [deps.Pkg.extensions] + REPLExt = "REPL" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1572,15 +1437,15 @@ version = "3.3.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "StableRNGs", "Statistics"] -git-tree-sha1 = "3ca9a356cd2e113c420f2c13bea19f8d3fb1cb18" +git-tree-sha1 = "26ca162858917496748aad52bb5d3be4d26a228a" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.4.3" +version = "1.4.4" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "TOML", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "55818b50883d7141bd98cdf5fc2f4ced96ee075f" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "TOML", "UUIDs", "UnicodeFun", "Unzip"] +git-tree-sha1 = "cb20a4eacda080e517e4deb9cfb6c7c518131265" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.40.16" +version = "1.41.6" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -1598,39 +1463,23 @@ version = "1.40.16" [[deps.PoissonRandom]] deps = ["LogExpFunctions", "Random"] -git-tree-sha1 = "bb178012780b34046c6d1600a315d8dbee89d83d" +git-tree-sha1 = "67afbcbe9e184d6729a92a022147ed4cf972ca7b" uuid = "e409e4f3-bfea-5376-8464-e040bb5c01ab" -version = "0.4.5" - -[[deps.Polyester]] -deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", 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+version = "1.2.0" [deps.PreallocationTools.extensions] + PreallocationToolsForwardDiffExt = "ForwardDiff" PreallocationToolsReverseDiffExt = "ReverseDiff" PreallocationToolsSparseConnectivityTracerExt = "SparseConnectivityTracer" [deps.PreallocationTools.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" @@ -1642,54 +1491,55 @@ version = "1.2.1" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" +git-tree-sha1 = "8b770b60760d4451834fe79dd483e318eee709c4" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.3" - -[[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "1101cd475833706e4d0e7b122218257178f48f34" -uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.4.0" +version = "1.5.2" 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[[deps.Qt6Declarative_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll", "Qt6ShaderTools_jll"] -git-tree-sha1 = "da7adf145cce0d44e892626e647f9dcbe9cb3e10" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll", "Qt6ShaderTools_jll", "Qt6Svg_jll"] +git-tree-sha1 = "d5b7dd0e226774cbd87e2790e34def09245c7eab" uuid = "629bc702-f1f5-5709-abd5-49b8460ea067" -version = "6.8.2+1" +version = "6.10.2+1" [[deps.Qt6ShaderTools_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll"] -git-tree-sha1 = "9eca9fc3fe515d619ce004c83c31ffd3f85c7ccf" +git-tree-sha1 = "4d85eedf69d875982c46643f6b4f66919d7e157b" uuid = "ce943373-25bb-56aa-8eca-768745ed7b5a" -version = "6.8.2+1" +version = "6.10.2+1" + +[[deps.Qt6Svg_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll"] +git-tree-sha1 = "81587ff5ff25a4e1115ce191e36285ede0334c9d" +uuid = "6de9746b-f93d-5813-b365-ba18ad4a9cf3" +version = "6.10.2+0" [[deps.Qt6Wayland_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll", "Qt6Declarative_jll"] -git-tree-sha1 = "e1d5e16d0f65762396f9ca4644a5f4ddab8d452b" +git-tree-sha1 = "672c938b4b4e3e0169a07a5f227029d4905456f2" uuid = "e99dba38-086e-5de3-a5b1-6e4c66e897c3" -version = "6.8.2+1" +version = "6.10.2+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9da16da70037ba9d701192e27befedefb91ec284" +git-tree-sha1 = "5e8e8b0ab68215d7a2b14b9921a946fee794749e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.11.2" +version = "2.11.3" [deps.QuadGK.extensions] QuadGKEnzymeExt = "Enzyme" @@ -1698,24 +1548,14 @@ version = "2.11.2" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" [[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" +version = "1.11.0" [[deps.Random]] deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "dbe5fd0b334694e905cb9fda73cd8554333c46e2" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.7.1" - -[[deps.RandomNumbers]] -deps = ["Random"] -git-tree-sha1 = "c6ec94d2aaba1ab2ff983052cf6a606ca5985902" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.6.0" +version = "1.11.0" [[deps.RecipesBase]] deps = ["PrecompileTools"] @@ -1730,32 +1570,42 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "efc718978d97745c58e69c5115a35c51a080e45e" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "LinearAlgebra", "PrecompileTools", "RecipesBase", "StaticArraysCore", "SymbolicIndexingInterface"] +git-tree-sha1 = "57b6fb3932fc8d1fc911f840d2c9de5fe3ba5008" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.34.1" +version = "4.3.0" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsCUDAExt = "CUDA" RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsFastBroadcastPolyesterExt = ["FastBroadcast", "Polyester"] RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsKernelAbstractionsExt = "KernelAbstractions" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsMooncakeExt = "Mooncake" RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] + RecursiveArrayToolsStatisticsExt = "Statistics" RecursiveArrayToolsStructArraysExt = "StructArrays" + RecursiveArrayToolsTablesExt = ["Tables"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -1778,15 +1628,15 @@ version = "1.3.1" [[deps.ResettableStacks]] deps = ["StaticArrays"] -git-tree-sha1 = "256eeeec186fa7f26f2801732774ccf277f05db9" +git-tree-sha1 = "31c086583c92ab32d82ebef0d09fbcd6dd2c54a7" uuid = "ae5879a3-cd67-5da8-be7f-38c6eb64a37b" -version = "1.1.1" +version = "1.2.0" [[deps.Rmath]] deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "852bd0f55565a9e973fcfee83a84413270224dc4" +git-tree-sha1 = "5b3d50eb374cea306873b371d3f8d3915a018f0b" uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.8.0" +version = "0.9.0" [[deps.Rmath_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1795,10 +1645,10 @@ uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" version = "0.5.1+0" [[deps.RootedTrees]] -deps = ["LaTeXStrings", "Latexify", "LinearAlgebra", "Preferences", "RecipesBase", "Requires"] -git-tree-sha1 = "c0c464d3063e46e4128d21fd677ca575ace44fdc" +deps = ["LaTeXStrings", "Latexify", "LinearAlgebra", "Preferences", "RecipesBase"] +git-tree-sha1 = "ca26c0baef0fe810d9cae384fff76635791882c9" uuid = "47965b36-3f3e-11e9-0dcf-4570dfd42a8c" -version = "2.23.1" +version = "2.25.0" weakdeps = ["Plots"] [deps.RootedTrees.extensions] @@ -1806,44 +1656,55 @@ weakdeps = ["Plots"] [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "86a8a8b783481e1ea6b9c91dd949cb32191f8ab4" +git-tree-sha1 = "cfcdc949c4660544ab0fdeed169561cb22f835f4" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.15" +version = "0.5.18" [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" -[[deps.SIMDTypes]] -git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" -uuid = "94e857df-77ce-4151-89e5-788b33177be4" -version = "0.1.0" - [[deps.SciMLBase]] -deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Moshi", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "31587e20cdea9fba3a689033313e658dfc9aae78" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "Random", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] +git-tree-sha1 = "450a8405f96d0a7c6caabed0852def06ba8c6bf1" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.102.1" +version = "3.7.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" - SciMLBaseMLStyleExt = "MLStyle" + SciMLBaseDifferentiationInterfaceExt = "DifferentiationInterface" + SciMLBaseDistributionsExt = "Distributions" + SciMLBaseEnzymeExt = "Enzyme" + SciMLBaseForwardDiffExt = "ForwardDiff" SciMLBaseMakieExt = "Makie" + SciMLBaseMeasurementsExt = "Measurements" + SciMLBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" + SciMLBaseMooncakeExt = "Mooncake" SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" + SciMLBaseReverseDiffExt = "ReverseDiff" + SciMLBaseTrackerExt = "Tracker" SciMLBaseZygoteExt = ["Zygote", "ChainRulesCore"] [deps.SciMLBase.weakdeps] ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - MLStyle = "d8e11817-5142-5d16-987a-aa16d5891078" + DifferentiationInterface = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" + Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLBenchmarks]] @@ -1854,26 +1715,43 @@ version = "0.1.3" [[deps.SciMLJacobianOperators]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DifferentiationInterface", "FastClosures", "LinearAlgebra", "SciMLBase", "SciMLOperators"] -git-tree-sha1 = "7da1216346ad79499d08d7e2a3dbf297dc80c829" +git-tree-sha1 = "7156a5b51cba1bea33a82a036939ead4131f92bc" uuid = "19f34311-ddf3-4b8b-af20-060888a46c0e" -version = "0.1.6" +version = "0.1.13" + +[[deps.SciMLLogging]] +deps = ["Logging", "LoggingExtras", "Preferences"] +git-tree-sha1 = "0161be062570af4042cf6f69e3d5d0b0555b6927" +uuid = "a6db7da4-7206-11f0-1eab-35f2a5dbe1d1" +version = "1.9.1" + + [deps.SciMLLogging.extensions] + SciMLLoggingTracyExt = "Tracy" + + [deps.SciMLLogging.weakdeps] + Tracy = "e689c965-62c8-4b79-b2c5-8359227902fd" [[deps.SciMLOperators]] -deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools"] -git-tree-sha1 = "3249fe77f322fe539e935ecb388c8290cd38a3fc" +deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra"] +git-tree-sha1 = "0e34162268883db01c04f988895a80d0659071bb" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "1.3.1" +version = "1.17.0" weakdeps = ["SparseArrays", "StaticArraysCore"] [deps.SciMLOperators.extensions] SciMLOperatorsSparseArraysExt = "SparseArrays" SciMLOperatorsStaticArraysCoreExt = "StaticArraysCore" +[[deps.SciMLPublic]] +git-tree-sha1 = "0ba076dbdce87ba230fff48ca9bca62e1f345c9b" +uuid = "431bcebd-1456-4ced-9d72-93c2757fff0b" +version = "1.0.1" + [[deps.SciMLStructures]] -deps = ["ArrayInterface"] -git-tree-sha1 = "566c4ed301ccb2a44cbd5a27da5f885e0ed1d5df" +deps = ["ArrayInterface", "PrecompileTools"] +git-tree-sha1 = "607f6867d0b0553e98fc7f725c9f9f13b4d01a32" uuid = "53ae85a6-f571-4167-b2af-e1d143709226" -version = "1.7.0" +version = "1.10.0" [[deps.Scratch]] deps = ["Dates"] @@ -1883,6 +1761,7 @@ version = "1.3.0" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" +version = "1.11.0" [[deps.Setfield]] deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] @@ -1903,68 +1782,62 @@ version = "1.2.0" [[deps.SimpleNonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "7aaa5fe4617271b64fce0466d187f2a72edbd81a" +git-tree-sha1 = "d688de789b7e643326caf9a1051376dadbcd8873" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "2.5.0" +version = "2.11.1" [deps.SimpleNonlinearSolve.extensions] SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" - SimpleNonlinearSolveDiffEqBaseExt = "DiffEqBase" SimpleNonlinearSolveReverseDiffExt = "ReverseDiff" SimpleNonlinearSolveTrackerExt = "Tracker" [deps.SimpleNonlinearSolve.weakdeps] ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DiffEqBase = "2b5f629d-d688-5b77-993f-72d75c75574e" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" - [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.SoftGlobalScope]] -deps = ["REPL"] -git-tree-sha1 = "986ec2b6162ccb95de5892ed17832f95badf770c" -uuid = "b85f4697-e234-5449-a836-ec8e2f98b302" -version = "1.1.0" +version = "1.11.0" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" +git-tree-sha1 = "64d974c2e6fdf07f8155b5b2ca2ffa9069b608d9" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.2.1" +version = "1.2.2" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -version = "1.10.0" +version = "1.11.0" [[deps.SparseMatrixColorings]] deps = ["ADTypes", "DocStringExtensions", "LinearAlgebra", "PrecompileTools", "Random", "SparseArrays"] -git-tree-sha1 = "9de43e0b9b976f1019bf7a879a686c4514520078" +git-tree-sha1 = "f63d76c7b7c329cf11badd564fd8ba877b09c3fe" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.4.21" +version = "0.4.27" [deps.SparseMatrixColorings.extensions] - SparseMatrixColoringsCUDAExt = "CUDA" + SparseMatrixColoringsCUDAExt = ["CUDA", "cuSPARSE"] SparseMatrixColoringsCliqueTreesExt = "CliqueTrees" SparseMatrixColoringsColorsExt = "Colors" + SparseMatrixColoringsGPUArraysExt = "GPUArrays" + SparseMatrixColoringsJuMPExt = ["JuMP", "MathOptInterface"] [deps.SparseMatrixColorings.weakdeps] CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" + GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" + JuMP = "4076af6c-e467-56ae-b986-b466b2749572" + MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" + cuSPARSE = "b26da814-b3bc-49ef-b0ee-c816305aa060" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "41852b8679f78c8d8961eeadc8f62cef861a52e3" +git-tree-sha1 = "2700b235561b0335d5bef7097a111dc513b8655e" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.5.1" +version = "2.7.2" weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] @@ -1972,35 +1845,15 @@ weakdeps = ["ChainRulesCore"] [[deps.StableRNGs]] deps = ["Random"] -git-tree-sha1 = "95af145932c2ed859b63329952ce8d633719f091" +git-tree-sha1 = "4f96c596b8c8258cc7d3b19797854d368f243ddc" uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" -version = "1.0.3" - -[[deps.Static]] -deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools"] -git-tree-sha1 = "f737d444cb0ad07e61b3c1bef8eb91203c321eff" -uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.2.0" - -[[deps.StaticArrayInterface]] -deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Static"] -git-tree-sha1 = "96381d50f1ce85f2663584c8e886a6ca97e60554" -uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.8.0" - - [deps.StaticArrayInterface.extensions] - StaticArrayInterfaceOffsetArraysExt = "OffsetArrays" - StaticArrayInterfaceStaticArraysExt = "StaticArrays" - - [deps.StaticArrayInterface.weakdeps] - OffsetArrays = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" +version = "1.0.4" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "0feb6b9031bd5c51f9072393eb5ab3efd31bf9e4" +git-tree-sha1 = "246a8bb2e6667f832eea063c3a56aef96429a3db" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.13" +version = "1.9.18" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -2008,61 +1861,54 @@ weakdeps = ["ChainRulesCore", "Statistics"] StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] -git-tree-sha1 = "192954ef1208c7019899fbf8049e717f92959682" +git-tree-sha1 = "6ab403037779dae8c514bad259f32a447262455a" uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.3" +version = "1.4.4" [[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] +deps = ["LinearAlgebra"] +git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.10.0" +version = "1.11.1" +weakdeps = ["SparseArrays"] + + [deps.Statistics.extensions] + SparseArraysExt = ["SparseArrays"] [[deps.StatsAPI]] deps = ["LinearAlgebra"] -git-tree-sha1 = "9d72a13a3f4dd3795a195ac5a44d7d6ff5f552ff" +git-tree-sha1 = "178ed29fd5b2a2cfc3bd31c13375ae925623ff36" uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.1" +version = "1.8.0" [[deps.StatsBase]] -deps = ["AliasTables", "DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "b81c5035922cc89c2d9523afc6c54be512411466" +deps = ["AliasTables", "DataAPI", "DataStructures", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "aceda6f4e598d331548e04cc6b2124a6148138e3" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.5" +version = "0.34.10" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "8e45cecc66f3b42633b8ce14d431e8e57a3e242e" +git-tree-sha1 = "91f091a8716a6bb38417a6e6f274602a19aaa685" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.5.0" +version = "1.5.2" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] StatsFunsChainRulesCoreExt = "ChainRulesCore" StatsFunsInverseFunctionsExt = "InverseFunctions" -[[deps.StrideArraysCore]] -deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "f35f6ab602df8413a50c4a25ca14de821e8605fb" -uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.5.7" - [[deps.StringEncodings]] deps = ["Libiconv_jll"] git-tree-sha1 = "b765e46ba27ecf6b44faf70df40c57aa3a547dcb" uuid = "69024149-9ee7-55f6-a4c4-859efe599b68" version = "0.3.7" -[[deps.StringManipulation]] -deps = ["PrecompileTools"] -git-tree-sha1 = "725421ae8e530ec29bcbdddbe91ff8053421d023" -uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.4.1" - [[deps.StructArrays]] deps = ["ConstructionBase", "DataAPI", "Tables"] -git-tree-sha1 = "8ad2e38cbb812e29348719cc63580ec1dfeb9de4" +git-tree-sha1 = "ad8002667372439f2e3611cfd14097e03fa4bccd" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.7.1" +version = "0.7.3" [deps.StructArrays.extensions] StructArraysAdaptExt = "Adapt" @@ -2079,6 +1925,10 @@ version = "0.7.1" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" + [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" @@ -2086,13 +1936,19 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "7.2.1+1" +version = "7.7.0+0" [[deps.SymbolicIndexingInterface]] -deps = ["Accessors", "ArrayInterface", "PrettyTables", "RuntimeGeneratedFunctions", "StaticArraysCore"] -git-tree-sha1 = "658f6d01bfe68d6bf47915bf5d868228138c7d71" +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "94c58884e013efff548002e8dc2fdd1cb74dfce5" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.3.41" +version = "0.3.46" + + [deps.SymbolicIndexingInterface.extensions] + SymbolicIndexingInterfacePrettyTablesExt = "PrettyTables" + + [deps.SymbolicIndexingInterface.weakdeps] + PrettyTables = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" [[deps.TOML]] deps = ["Dates"] @@ -2125,12 +1981,7 @@ version = "0.1.1" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.ThreadingUtilities]] -deps = ["ManualMemory"] -git-tree-sha1 = "d969183d3d244b6c33796b5ed01ab97328f2db85" -uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" -version = "0.5.5" +version = "1.11.0" [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] @@ -2163,14 +2014,11 @@ version = "1.6.1" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" - -[[deps.UnPack]] -git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" -uuid = "3a884ed6-31ef-47d7-9d2a-63182c4928ed" -version = "1.0.2" +version = "1.11.0" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +version = "1.11.0" [[deps.UnicodeFun]] deps = ["REPL"] @@ -2178,25 +2026,6 @@ git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" version = "0.4.1" -[[deps.Unitful]] -deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "d2282232f8a4d71f79e85dc4dd45e5b12a6297fb" -uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.23.1" -weakdeps = ["ConstructionBase", "ForwardDiff", "InverseFunctions", "Printf"] - - [deps.Unitful.extensions] - ConstructionBaseUnitfulExt = "ConstructionBase" - ForwardDiffExt = "ForwardDiff" - InverseFunctionsUnitfulExt = "InverseFunctions" - PrintfExt = "Printf" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "af305cc62419f9bd61b6644d19170a4d258c7967" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.7.0" - [[deps.Unzip]] git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" @@ -2227,9 +2056,9 @@ version = "0.10.12" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "fee71455b0aaa3440dfdd54a9a36ccef829be7d4" +git-tree-sha1 = "b29c22e245d092b8b4e8d3c09ad7baa586d9f573" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.8.1+0" +version = "5.8.3+0" [[deps.Xorg_libICE_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2245,9 +2074,9 @@ version = "1.2.6+0" [[deps.Xorg_libX11_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "b5899b25d17bf1889d25906fb9deed5da0c15b3b" +git-tree-sha1 = "808090ede1d41644447dd5cbafced4731c56bd2f" uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.12+0" +version = "1.8.13+0" [[deps.Xorg_libXau_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2269,15 +2098,15 @@ version = "1.1.6+0" [[deps.Xorg_libXext_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "a4c0ee07ad36bf8bbce1c3bb52d21fb1e0b987fb" +git-tree-sha1 = "1a4a26870bf1e5d26cd585e38038d399d7e65706" uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.7+0" +version = "1.3.8+0" [[deps.Xorg_libXfixes_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "9caba99d38404b285db8801d5c45ef4f4f425a6d" +git-tree-sha1 = "75e00946e43621e09d431d9b95818ee751e6b2ef" uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "6.0.1+0" +version = "6.0.2+0" [[deps.Xorg_libXi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] @@ -2287,15 +2116,15 @@ version = "1.8.3+0" [[deps.Xorg_libXinerama_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXext_jll"] -git-tree-sha1 = "a5bc75478d323358a90dc36766f3c99ba7feb024" +git-tree-sha1 = "0ba01bc7396896a4ace8aab67db31403c71628f4" uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.6+0" +version = "1.1.7+0" [[deps.Xorg_libXrandr_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "aff463c82a773cb86061bce8d53a0d976854923e" +git-tree-sha1 = "6c174ef70c96c76f4c3f4d3cfbe09d018bcd1b53" uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.5+0" +version = "1.5.6+0" [[deps.Xorg_libXrender_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] @@ -2303,6 +2132,12 @@ git-tree-sha1 = "7ed9347888fac59a618302ee38216dd0379c480d" uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" version = "0.9.12+0" +[[deps.Xorg_libpciaccess_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "58972370b81423fc546c56a60ed1a009450177c3" +uuid = "a65dc6b1-eb27-53a1-bb3e-dea574b5389e" +version = "0.19.0+0" + [[deps.Xorg_libxcb_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXau_jll", "Xorg_libXdmcp_jll"] git-tree-sha1 = "bfcaf7ec088eaba362093393fe11aa141fa15422" @@ -2311,15 +2146,15 @@ version = "1.17.1+0" [[deps.Xorg_libxkbfile_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "e3150c7400c41e207012b41659591f083f3ef795" +git-tree-sha1 = "ed756a03e95fff88d8f738ebc2849431bdd4fd1a" uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.3+0" +version = "1.2.0+0" [[deps.Xorg_xcb_util_cursor_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "c5bf2dad6a03dfef57ea0a170a1fe493601603f2" +git-tree-sha1 = "9750dc53819eba4e9a20be42349a6d3b86c7cdf8" uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.5+0" +version = "0.1.6+0" [[deps.Xorg_xcb_util_image_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] @@ -2359,9 +2194,9 @@ version = "1.4.7+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "00af7ebdc563c9217ecc67776d1bbf037dbcebf4" +git-tree-sha1 = "429722587208f02b1cecbddcd20133df2f1ed796" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.44.0+0" +version = "2.47.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2371,15 +2206,15 @@ version = "1.6.0+0" [[deps.YAML]] deps = ["Base64", "Dates", "Printf", "StringEncodings"] -git-tree-sha1 = "2f58ac39f64b41fb812340347525be3b590cce3b" +git-tree-sha1 = "a1c0c7585346251353cddede21f180b96388c403" uuid = "ddb6d928-2868-570f-bddf-ab3f9cf99eb6" -version = "0.4.14" +version = "0.4.16" [[deps.ZMQ]] -deps = ["FileWatching", "PrecompileTools", "Sockets", "ZeroMQ_jll"] -git-tree-sha1 = "2d060e1f014c07561817bf6f3c0eb66b309e04bd" +deps = ["FileWatching", "PrecompileTools", "Printf", "Sockets", "ZeroMQ_jll"] +git-tree-sha1 = "5f1c7008e2258c61af0eafef8c1f536b9fffbbd2" uuid = "c2297ded-f4af-51ae-bb23-16f91089e4e1" -version = "1.4.1" +version = "1.5.1" [[deps.ZeroMQ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "libsodium_jll"] @@ -2412,15 +2247,15 @@ version = "0.61.1+0" [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "522c1df09d05a71785765d19c9524661234738e9" +git-tree-sha1 = "850b06095ee71f0135d644ffd8a52850699581ed" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.11.0+0" +version = "3.13.3+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "e17c115d55c5fbb7e52ebedb427a0dca79d4484e" +git-tree-sha1 = "125eedcb0a4a0bba65b657251ce1d27c8714e9d6" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.2+0" +version = "0.17.4+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] @@ -2433,6 +2268,12 @@ git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" version = "0.2.2+0" +[[deps.libdrm_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libpciaccess_jll"] +git-tree-sha1 = "63aac0bcb0b582e11bad965cef4a689905456c03" +uuid = "8e53e030-5e6c-5a89-a30b-be5b7263a166" +version = "2.4.125+1" + [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "56d643b57b188d30cccc25e331d416d3d358e557" @@ -2453,9 +2294,9 @@ version = "1.28.1+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "07b6a107d926093898e82b3b1db657ebe33134ec" +git-tree-sha1 = "e51150d5ab85cee6fc36726850f0e627ad2e4aba" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.50+0" +version = "1.6.58+0" [[deps.libsodium_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2463,6 +2304,12 @@ git-tree-sha1 = "011b0a7331b41c25524b64dc42afc9683ee89026" uuid = "a9144af2-ca23-56d9-984f-0d03f7b5ccf8" version = "1.0.21+0" +[[deps.libva_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll", "Xorg_libXext_jll", "Xorg_libXfixes_jll", "libdrm_jll"] +git-tree-sha1 = "7dbf96baae3310fe2fa0df0ccbb3c6288d5816c9" +uuid = "9a156e7d-b971-5f62-b2c9-67348b8fb97c" +version = "2.23.0+0" + [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5" @@ -2478,13 +2325,13 @@ version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.52.0+1" +version = "1.59.0+0" [[deps.oneTBB_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d5a767a3bb77135a99e433afe0eb14cd7f6914c3" +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "1350188a69a6e46f799d3945beef36435ed7262f" uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" -version = "2022.0.0+0" +version = "2022.0.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] @@ -2492,19 +2339,19 @@ uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" version = "17.4.0+2" [[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" +version = "10164.0.1+0" [[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e7b67590c14d487e734dcb925924c5dc43ec85f3" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" +version = "4.1.0+0" [[deps.xkbcommon_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "fbf139bce07a534df0e699dbb5f5cc9346f95cc1" +git-tree-sha1 = "a1fc6507a40bf504527d0d4067d718f8e179b2b8" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.9.2+0" +version = "1.13.0+0" diff --git a/benchmarks/NonStiffDDE/Project.toml b/benchmarks/NonStiffDDE/Project.toml index 3f351e74c..65bbacb90 100644 --- a/benchmarks/NonStiffDDE/Project.toml +++ b/benchmarks/NonStiffDDE/Project.toml @@ -3,15 +3,17 @@ DDEProblemLibrary = "f42792ee-6ffc-4e2a-ae83-8ee2f22de800" DelayDiffEq = "bcd4f6db-9728-5f36-b5f7-82caef46ccdb" DiffEqDevTools = "f3b72e0c-5b89-59e1-b016-84e28bfd966d" LabelledArrays = "2ee39098-c373-598a-b85f-a56591580800" +OrdinaryDiffEqLowOrderRK = "1344f307-1e59-4825-a18e-ace9aa3fa4c6" Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" SciMLBenchmarks = "31c91b34-3c75-11e9-0341-95557aab0344" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" [compat] DDEProblemLibrary = "0.1" -DelayDiffEq = "5.37" -DiffEqDevTools = "2.30" +DelayDiffEq = "6" +DiffEqDevTools = "3" LabelledArrays = "1" +OrdinaryDiffEqLowOrderRK = "2" Plots = "1.4" SciMLBenchmarks = "0.1" StaticArrays = "1" diff --git a/benchmarks/NonStiffODE/FitzhughNagumo_wpd.jmd b/benchmarks/NonStiffODE/FitzhughNagumo_wpd.jmd index ae3a7bd1b..22392d4c8 100644 --- a/benchmarks/NonStiffODE/FitzhughNagumo_wpd.jmd +++ b/benchmarks/NonStiffODE/FitzhughNagumo_wpd.jmd @@ -11,6 +11,8 @@ The purpose of this is to see how the errors scale on a standard nonlinear probl using OrdinaryDiffEq, ParameterizedFunctions, ODEInterface, ODEInterfaceDiffEq, LSODA, Sundials, DiffEqDevTools, StaticArrays, OrdinaryDiffEqSIMDRK +using OrdinaryDiffEqAdamsBashforthMoulton, OrdinaryDiffEqExtrapolation, OrdinaryDiffEqHighOrderRK, OrdinaryDiffEqLowOrderRK, OrdinaryDiffEqVerner +using SciMLLogging using Plots; gr() @@ -141,7 +143,7 @@ solnames = ["Tsit5", "Vern9", "VCABM", "Vern9 Static", "VCABM Static", "AitkenNeville", "Midpoint Deuflhard", "Midpoint Hairer Wanner"] wp = WorkPrecisionSet( probs, abstols, reltols, setups; appxsol = test_sol, names = solnames, - save_everystep = false, verbose = false, numruns = 100) + save_everystep = false, verbose = SciMLLogging.None(), numruns = 100) plot(wp) ``` @@ -161,7 +163,7 @@ setups = [Dict(:alg=>ExtrapolationMidpointDeuflhard( solnames = ["Deuflhard", "No threads", "standard", "Romberg", "Bulirsch"] wp = WorkPrecisionSet( probs, abstols, reltols, setups; appxsol = test_sol, names = solnames, - save_everystep = false, verbose = false, numruns = 100) + save_everystep = false, verbose = SciMLLogging.None(), numruns = 100) plot(wp) ``` @@ -179,7 +181,7 @@ setups = [Dict(:alg=>ExtrapolationMidpointHairerWanner( solnames = ["1", "2", "3", "4", "5"] wp = WorkPrecisionSet( probs, abstols, reltols, setups; appxsol = test_sol, names = solnames, - save_everystep = false, verbose = false, numruns = 100) + save_everystep = false, verbose = SciMLLogging.None(), numruns = 100) plot(wp) ``` diff --git a/benchmarks/NonStiffODE/LotkaVolterra_wpd.jmd b/benchmarks/NonStiffODE/LotkaVolterra_wpd.jmd index c50de34be..805b15c24 100644 --- a/benchmarks/NonStiffODE/LotkaVolterra_wpd.jmd +++ b/benchmarks/NonStiffODE/LotkaVolterra_wpd.jmd @@ -10,6 +10,8 @@ The purpose of this problem is to test the performance on easy problems. Since i ```julia using OrdinaryDiffEq, ParameterizedFunctions, ODEInterfaceDiffEq, LSODA, Sundials, DiffEqDevTools, StaticArrays, OrdinaryDiffEqSIMDRK, IRKGaussLegendre +using OrdinaryDiffEqAdamsBashforthMoulton, OrdinaryDiffEqExtrapolation, OrdinaryDiffEqHighOrderRK, OrdinaryDiffEqLowOrderRK +using SciMLLogging f = @ode_def LotkaVolterra begin dx = a*x - b*x*y @@ -166,7 +168,7 @@ solnames = ["Tsit5", "Vern9", "VCABM", "IRKGL16", "IRKGL16 SIMD", "AitkenNeville", "Midpoint Deuflhard", "Midpoint Hairer Wanner"] wp = WorkPrecisionSet( probs, abstols, reltols, setups; appxsol = test_sol, names = solnames, - save_everystep = false, verbose = false, numruns = 100) + save_everystep = false, verbose = SciMLLogging.None(), numruns = 100) plot(wp) ``` @@ -186,7 +188,7 @@ setups = [Dict(:alg=>ExtrapolationMidpointDeuflhard( solnames = ["Deuflhard", "No threads", "standard", "Romberg", "Bulirsch"] wp = WorkPrecisionSet( probs, abstols, reltols, setups; appxsol = test_sol, names = solnames, - save_everystep = false, verbose = false, numruns = 100) + save_everystep = false, verbose = SciMLLogging.None(), numruns = 100) plot(wp) ``` @@ -204,7 +206,7 @@ setups = [Dict(:alg=>ExtrapolationMidpointHairerWanner( solnames = ["1", "2", "3", "4", "5"] wp = WorkPrecisionSet( probs, abstols, reltols, setups; appxsol = test_sol, names = solnames, - save_everystep = false, verbose = false, numruns = 100) + save_everystep = false, verbose = SciMLLogging.None(), numruns = 100) plot(wp) ``` diff --git a/benchmarks/NonStiffODE/Manifest.toml b/benchmarks/NonStiffODE/Manifest.toml index 1458c9b2d..1c0b46f13 100644 --- a/benchmarks/NonStiffODE/Manifest.toml +++ b/benchmarks/NonStiffODE/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.11" +julia_version = "1.11.9" manifest_format = "2.0" -project_hash = "109f0f5c13b5f7088c6bd340c2f63eac54e8c9ec" +project_hash = "263273a54d74842989cabec138545f032887d39f" [[deps.ADTypes]] -git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" +git-tree-sha1 = "bbc22a9a08a0ef6460041086d8a7b27940ed4ffd" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.21.0" +version = "1.22.0" [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" @@ -56,9 +56,9 @@ version = "0.1.44" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "35ea197a51ce46fcd01c4a44befce0578a1aaeca" +git-tree-sha1 = "0761717147821d696c9470a7a86364b2fbd22fd8" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.5.0" +version = "4.5.2" weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] @@ -73,7 +73,7 @@ version = "1.1.3" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.ArnoldiMethod]] deps = ["LinearAlgebra", "Random", "StaticArrays"] @@ -83,9 +83,9 @@ version = "0.4.0" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "78b3a7a536b4b0a747a0f296ea77091ca0a9f9a3" +git-tree-sha1 = "54f895554d05c83e3dd59f6a396671dae8999573" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.23.0" +version = "7.24.0" [deps.ArrayInterface.extensions] ArrayInterfaceAMDGPUExt = "AMDGPU" @@ -129,6 +129,7 @@ weakdeps = ["SparseArrays"] [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +version = "1.11.0" [[deps.BandedMatrices]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] @@ -146,6 +147,7 @@ version = "1.11.0" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Bijections]] git-tree-sha1 = "a2d308fcd4c2fb90e943cf9cd2fbfa9c32b69733" @@ -186,9 +188,9 @@ weakdeps = ["Adapt", "BandedMatrices"] [[deps.BracketingNonlinearSolve]] deps = ["CommonSolve", "ConcreteStructs", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "d9b66401c1fa982c7ca984d0566af5a9b3551420" +git-tree-sha1 = "7ad7171d693ae5552ac43862e7f6b61df4471c2b" uuid = "70df07ce-3d50-431d-a3e7-ca6ddb60ac1e" -version = "1.12.0" +version = "1.12.1" [deps.BracketingNonlinearSolve.extensions] BracketingNonlinearSolveChainRulesCoreExt = ["ChainRulesCore", "ForwardDiff"] @@ -221,12 +223,6 @@ git-tree-sha1 = "d0efe2c6fdcdaa1c161d206aa8b933788397ec71" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" version = "1.18.6+0" -[[deps.CloseOpenIntervals]] -deps = ["Static", "StaticArrayInterface"] -git-tree-sha1 = "05ba0d07cd4fd8b7a39541e31a7b0254704ea581" -uuid = "fb6a15b2-703c-40df-9091-08a04967cfa9" -version = "0.1.13" - [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" @@ -244,13 +240,11 @@ deps = ["FixedPointNumbers", "Random"] git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" version = "0.12.1" +weakdeps = ["StyledStrings"] [deps.ColorTypes.extensions] StyledStringsExt = "StyledStrings" - [deps.ColorTypes.weakdeps] - StyledStrings = "f489334b-da3d-4c2e-b8f0-e476e12c162b" - [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" @@ -375,6 +369,7 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" [[deps.Dbus_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] @@ -395,10 +390,10 @@ uuid = "85a47980-9c8c-11e8-2b9f-f7ca1fa99fb4" version = "0.4.6" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "c5fe5125fcba8f98cdc5c7221b6c324883899c07" +deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "2d7ca58e6ce2d1f7a435773d73d111741e283070" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.213.0" +version = "7.1.0" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" @@ -439,9 +434,9 @@ version = "6.213.0" [[deps.DiffEqCallbacks]] deps = ["ConcreteStructs", "DataStructures", "DiffEqBase", "DifferentiationInterface", "LinearAlgebra", "Markdown", "PrecompileTools", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "6578347ab1743b1eed62a83b537bd276a5cc736b" +git-tree-sha1 = "51f445c25b80c26c83c61520cde214adf8c05227" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "4.13.0" +version = "4.17.0" [deps.DiffEqCallbacks.extensions] DiffEqCallbacksFunctorsExt = "Functors" @@ -450,16 +445,16 @@ version = "4.13.0" Functors = "d9f16b24-f501-4c13-a1f2-28368ffc5196" [[deps.DiffEqDevTools]] -deps = ["BracketingNonlinearSolve", "CommonSolve", "DiffEqBase", "DiffEqNoiseProcess", "Distributed", "ExplicitImports", "LinearAlgebra", "Logging", "RecipesBase", "RecursiveArrayTools", "RootedTrees", "SciMLBase", "Statistics", "StructArrays"] -git-tree-sha1 = "85b69022536add40c3ef422f6f2224cd59f65076" +deps = ["DiffEqBase", "DiffEqNoiseProcess", "Distributed", "LinearAlgebra", "Logging", "NLsolve", "RecipesBase", "RecursiveArrayTools", "RootedTrees", "SciMLBase", "Statistics", "StructArrays"] +git-tree-sha1 = "cc290a2fdad4d332ba6a88953eaf5800687ccd49" uuid = "f3b72e0c-5b89-59e1-b016-84e28bfd966d" -version = "2.51.0" +version = "3.0.0" [[deps.DiffEqNoiseProcess]] deps = ["CommonSolve", "DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "PoissonRandom", "QuadGK", "Random", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "feb625b2aa510b7f8aee69d3fc60c1eed53640cc" +git-tree-sha1 = "5b5fe6eb9e994ff0de4e84fe149b03c706fd6403" uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" -version = "5.28.0" +version = "5.31.0" [deps.DiffEqNoiseProcess.extensions] DiffEqNoiseProcessOptimExt = "Optim" @@ -483,9 +478,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +git-tree-sha1 = "d0250552e42bf7cc36479fd38a6e30004c9e8c2b" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.7.16" +version = "0.7.17" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -495,7 +490,7 @@ version = "0.7.16" DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] - DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGPUArraysCoreExt = ["GPUArraysCore", "Adapt"] DifferentiationInterfaceGTPSAExt = "GTPSA" DifferentiationInterfaceMooncakeExt = "Mooncake" DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] @@ -509,6 +504,7 @@ version = "0.7.16" DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] [deps.DifferentiationInterface.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" @@ -531,15 +527,30 @@ version = "0.7.16" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" +[[deps.Distances]] +deps = ["LinearAlgebra", "Statistics", "StatsAPI"] +git-tree-sha1 = "c7e3a542b999843086e2f29dac96a618c105be1d" +uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" +version = "0.10.12" + + [deps.Distances.extensions] + DistancesChainRulesCoreExt = "ChainRulesCore" + DistancesSparseArraysExt = "SparseArrays" + + [deps.Distances.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" +git-tree-sha1 = "e421c1938fafab0165b04dc1a9dbe2a26272952c" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.123" +version = "0.25.125" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -587,9 +598,9 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.7" [[deps.EnzymeCore]] -git-tree-sha1 = "24bbb6fc8fb87eb71c1f8d00184a60fc22c63903" +git-tree-sha1 = "c6ee69ee502060982d12dbaaf3d8fcb4e835a0d1" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.8.19" +version = "0.8.20" [deps.EnzymeCore.extensions] AdaptExt = "Adapt" @@ -613,25 +624,9 @@ version = "0.1.11" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "27af30de8b5445644e8ffe3bcb0d72049c089cf1" +git-tree-sha1 = "8f05e9a2e7c2e3eb524102bb2926c5743c07fbe1" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.7.3+0" - -[[deps.ExplicitImports]] -deps = ["Markdown", "Pkg", "PrecompileTools", "TOML", "Test"] -git-tree-sha1 = "a8b6c26bf0ea9f8c4bad71e109a5fa64f34be392" -uuid = "7d51a73a-1435-4ff3-83d9-f097790105c7" -version = "1.15.0" - -[[deps.ExponentialUtilities]] -deps = ["Adapt", "ArrayInterface", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "PrecompileTools", "Printf", "SparseArrays", "libblastrampoline_jll"] -git-tree-sha1 = "cc294ead6a85e975a8519dd4a0a6cb294eeb18d1" -uuid = "d4d017d3-3776-5f7e-afef-a10c40355c18" -version = "1.30.0" -weakdeps = ["StaticArrays"] - - [deps.ExponentialUtilities.extensions] - ExponentialUtilitiesStaticArraysExt = "StaticArrays" +version = "2.8.0+0" [[deps.ExprTools]] git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" @@ -651,15 +646,23 @@ version = "0.4.5" [[deps.FFMPEG_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libva_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "66381d7059b5f3f6162f28831854008040a4e905" +git-tree-sha1 = "cac41ca6b2d399adfc95e51240566f8a60a80806" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "8.0.1+1" +version = "8.1.0+0" [[deps.FastBroadcast]] -deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "ab1b34570bcdf272899062e1a56285a53ecaae08" +deps = ["ArrayInterface", "LinearAlgebra"] +git-tree-sha1 = "7feeed2c9a7fa272189a5561bebf0c4ccaedb6ec" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.3.5" +version = "1.3.2" + + [deps.FastBroadcast.extensions] + FastBroadcastPolyesterExt = "Polyester" + FastBroadcastStaticExt = "Static" + + [deps.FastBroadcast.weakdeps] + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" + Static = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" @@ -697,6 +700,7 @@ version = "1.3.1" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" +version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] @@ -719,9 +723,9 @@ version = "1.8.0" [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "9340ca07ca27093ff68418b7558ca37b05f8aeb1" +git-tree-sha1 = "f7017a4f337f8df189fcce98e32b67a1298a2115" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.29.0" +version = "2.31.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -786,20 +790,30 @@ uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" version = "1.1.3" [[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +deps = ["FunctionWrappers", "PrecompileTools", "TruncatedStacktraces"] +git-tree-sha1 = "c1b0c3a166a2a393257aa888787ca817532e14ce" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" +version = "1.8.0" + + [deps.FunctionWrappersWrappers.extensions] + FunctionWrappersWrappersEnzymeExt = ["Enzyme", "EnzymeCore"] + FunctionWrappersWrappersMooncakeExt = "Mooncake" + + [deps.FunctionWrappersWrappers.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" +version = "1.11.0" [[deps.GLFW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] -git-tree-sha1 = "b7bfd56fa66616138dfe5237da4dc13bbd83c67f" +git-tree-sha1 = "9e0fb9e54594c47f278d75063980e43066e26e20" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.4.1+0" +version = "3.4.1+1" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -823,12 +837,6 @@ git-tree-sha1 = "be8a1b8065959e24fdc1b51402f39f3b6f0f6653" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" version = "0.73.24+0" -[[deps.GenericSchur]] -deps = ["LinearAlgebra", "Printf"] -git-tree-sha1 = "a694e2a57394e409f7a11ee0977362a9fafcb8c7" -uuid = "c145ed77-6b09-5dd9-b285-bf645a82121e" -version = "0.5.6" - [[deps.GettextRuntime_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll"] git-tree-sha1 = "45288942190db7c5f760f59c04495064eedf9340" @@ -855,9 +863,9 @@ version = "3.7.0+0" [[deps.Git_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "dc34a3e3d96b4ed305b641e626dc14c12b7824b8" +git-tree-sha1 = "0dd4cfb426924210c8f42742751cbde74b27bfa3" uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb" -version = "2.53.0+0" +version = "2.54.0+0" [[deps.Glib_jll]] deps = ["Artifacts", "GettextRuntime_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] @@ -934,10 +942,10 @@ version = "1.34.4" Revise = "295af30f-e4ad-537b-8983-00126c2a3abe" [[deps.IRKGaussLegendre]] -deps = ["DiffEqBase", "LinearAlgebra", "Parameters", "Reexport", "SIMD", "SciMLBase"] -git-tree-sha1 = "3156f0c7ddaa0e2e7bdbdc63054993673163fa26" +deps = ["DiffEqBase", "LinearAlgebra", "Parameters", "Reexport", "SIMD", "SciMLBase", "SciMLLogging"] +git-tree-sha1 = "2d91095961a40d4c25e32b8200d1bed23f52cfff" uuid = "58bc7355-f626-4c51-96f2-1f8a038f95a2" -version = "0.2.13" +version = "1.0.0" [[deps.IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" @@ -945,10 +953,10 @@ uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" version = "0.1.1" [[deps.ImplicitDiscreteSolve]] -deps = ["DiffEqBase", "OrdinaryDiffEqCore", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SymbolicIndexingInterface", "UnPack"] -git-tree-sha1 = "3e9ef0da0cabc23fc74e24cb233e184023f3b3ce" +deps = ["ConcreteStructs", "DiffEqBase", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "OrdinaryDiffEqCore", "Reexport", "SciMLBase", "SymbolicIndexingInterface"] +git-tree-sha1 = "dc9f649cbcdd4f2b402d7cbbd5cf61517b45ad5a" uuid = "3263718b-31ed-49cf-8a0f-35a466e8af96" -version = "1.2.0" +version = "2.0.0" [[deps.Indexing]] git-tree-sha1 = "ce1566720fd6b19ff3411404d4b977acd4814f9f" @@ -974,6 +982,7 @@ version = "2025.2.0+0" [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" +version = "1.11.0" [[deps.IntervalSets]] git-tree-sha1 = "79d6bd28c8d9bccc2229784f1bd637689b256377" @@ -1032,23 +1041,24 @@ version = "0.2.1" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "b6893345fd6658c8e475d40155789f4860ac3b21" +git-tree-sha1 = "c0c9b76f3520863909825cbecdef58cd63de705a" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.1.4+0" +version = "3.1.5+0" [[deps.JumpProcesses]] deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "PoissonRandom", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "SymbolicIndexingInterface"] -git-tree-sha1 = "310fc6ddd46db8946f988b142fc2821f2f6456ff" +git-tree-sha1 = "2a8e5b9b90ef0da05f61904d0a39a7b1c0a83310" uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" -version = "9.23.1" +version = "9.28.0" [deps.JumpProcesses.extensions] JumpProcessesKernelAbstractionsExt = ["Adapt", "KernelAbstractions"] + JumpProcessesOrdinaryDiffEqCoreExt = "OrdinaryDiffEqCore" [deps.JumpProcesses.weakdeps] Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" - FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + OrdinaryDiffEqCore = "bbf590c4-e513-4bbe-9b18-05decba2e5d8" [[deps.Krylov]] deps = ["LinearAlgebra", "Printf", "SparseArrays"] @@ -1064,9 +1074,9 @@ version = "3.100.3+0" [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "aaafe88dccbd957a8d82f7d05be9b69172e0cee3" +git-tree-sha1 = "17b94ecafcfa45e8360a4fc9ca6b583b049e4e37" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "4.0.1+0" +version = "4.1.0+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1076,9 +1086,9 @@ version = "18.1.8+0" [[deps.LSODA]] deps = ["Compat", "DiffEqBase", "LSODA_jll", "LinearAlgebra", "Parameters", "Printf", "SciMLBase"] -git-tree-sha1 = "ab0f48b894e66e32227cd9f5285139b965f84d1c" +git-tree-sha1 = "0a062653ab0a72c7a04f53f4bd6ca83a180937b4" uuid = "7f56f5a3-f504-529b-bc02-0b1fe5e64312" -version = "0.7.6" +version = "0.7.7" [[deps.LSODA_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1118,6 +1128,7 @@ version = "0.1.17" [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" +version = "1.11.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] @@ -1127,16 +1138,17 @@ version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.4.0+0" +version = "8.6.0+0" [[deps.LibGit2]] deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +version = "1.11.0" [[deps.LibGit2_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.6.4+0" +version = "1.7.2+0" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] @@ -1145,6 +1157,7 @@ version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" +version = "1.11.0" [[deps.Libffi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1166,9 +1179,9 @@ version = "1.18.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "97bbca976196f2a1eb9607131cb108c69ec3f8a6" +git-tree-sha1 = "cc3ad4faf30015a3e8094c9b5b7f19e85bdf2386" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] @@ -1178,15 +1191,15 @@ version = "4.7.2+0" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d0205286d9eceadc518742860bf23f703779a3d6" +git-tree-sha1 = "d620582b1f0cbe2c72dd1d5bd195a9ce73370ab1" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.LineSearch]] deps = ["ADTypes", "CommonSolve", "ConcreteStructs", "FastClosures", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "SciMLBase", "SciMLJacobianOperators", "StaticArraysCore"] -git-tree-sha1 = "9f7253c0574b4b585c8909232adb890930da980a" +git-tree-sha1 = "fd58a77c92e7c8f1db25c9839127d52943a49349" uuid = "87fe0de2-c867-4266-b59a-2f0a94fc965b" -version = "0.1.6" +version = "0.1.9" weakdeps = ["LineSearches"] [deps.LineSearch.extensions] @@ -1194,19 +1207,20 @@ weakdeps = ["LineSearches"] [[deps.LineSearches]] deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Printf"] -git-tree-sha1 = "738bdcacfef25b3a9e4a39c28613717a6b23751e" +git-tree-sha1 = "9ea3422d03222c6de679934d1c08f0a99405aa03" uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.6.0" +version = "7.5.1" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +version = "1.11.0" [[deps.LinearSolve]] deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "35b6d3b3cfa50f97a7e13bfdd3b82d9f9fcb68af" +git-tree-sha1 = "42b5cb44317e89ef75dd841c9c8eba9045bf9ff0" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "3.72.0" +version = "3.75.0" [deps.LinearSolve.extensions] LinearSolveAMDGPUExt = "AMDGPU" @@ -1231,7 +1245,9 @@ version = "3.72.0" LinearSolveKrylovKitExt = "KrylovKit" LinearSolveMetalExt = "Metal" LinearSolveMooncakeExt = "Mooncake" + LinearSolvePETScCSRExt = ["PETSc", "SparseArrays", "SparseMatricesCSR"] LinearSolvePETScExt = ["PETSc", "SparseArrays"] + LinearSolvePETScMPIExt = ["PETSc", "PartitionedArrays", "SparseArrays", "SparseMatricesCSR"] LinearSolveParUExt = ["ParU_jll", "SparseArrays"] LinearSolvePardisoExt = ["Pardiso", "SparseArrays"] LinearSolveRecursiveFactorizationExt = "RecursiveFactorization" @@ -1264,8 +1280,10 @@ version = "3.72.0" PETSc = "ace2c81b-2b5f-4b1e-a30d-d662738edfe0" ParU_jll = "9e0b026c-e8ce-559c-a2c4-6a3d5c955bc9" Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" + PartitionedArrays = "5a9dfac6-5c52-46f7-8278-5e2210713be9" RecursiveFactorization = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseMatricesCSR = "a0a7dd2c-ebf4-11e9-1f05-cf50bc540ca1" Sparspak = "e56a9233-b9d6-4f03-8d0f-1825330902ac" blis_jll = "6136c539-28a5-5bf0-87cc-b183200dce32" @@ -1287,6 +1305,7 @@ version = "0.3.29" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" +version = "1.11.0" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] @@ -1313,6 +1332,7 @@ version = "0.1.8" [[deps.Markdown]] deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +version = "1.11.0" [[deps.MaybeInplace]] deps = ["ArrayInterface", "LinearAlgebra", "MacroTools"] @@ -1333,7 +1353,7 @@ version = "1.1.10" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.1010+0" +version = "2.28.6+0" [[deps.Measures]] git-tree-sha1 = "b513cedd20d9c914783d8ad83d08120702bf2c77" @@ -1348,12 +1368,13 @@ version = "1.2.0" [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" +version = "1.11.0" [[deps.ModelingToolkit]] -deps = ["ADTypes", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "ConstructionBase", "DataStructures", "DiffEqBase", "DifferentiationInterface", "DocStringExtensions", "FillArrays", "FindFirstFunctions", "ForwardDiff", "Graphs", "InteractiveUtils", "Libdl", "LinearAlgebra", "ModelingToolkitBase", "ModelingToolkitTearing", "Moshi", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "StateSelection", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] -git-tree-sha1 = "a395115299f96212461f045e7619d04c2c9986a2" +deps = ["ADTypes", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "ConstructionBase", "DataStructures", "DiffEqBase", "DifferentiationInterface", "DocStringExtensions", "FillArrays", "ForwardDiff", "Graphs", "InteractiveUtils", "Libdl", "LinearAlgebra", "ModelingToolkitBase", "ModelingToolkitTearing", "Moshi", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "StateSelection", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] +git-tree-sha1 = "8527fee82ed8dc6934827b447b0555674c3ba1be" uuid = "961ee093-0014-501f-94e3-6117800e7a78" -version = "11.19.1" +version = "11.24.1" [deps.ModelingToolkit.extensions] MTKFMIExt = "FMIImport" @@ -1368,10 +1389,10 @@ version = "11.19.1" OrdinaryDiffEqRosenbrock = "43230ef6-c299-4910-a778-202eb28ce4ce" [[deps.ModelingToolkitBase]] -deps = ["ADTypes", "AbstractTrees", "ArrayInterface", "BandedMatrices", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffRules", "DifferentiationInterface", "DocStringExtensions", "DomainSets", "EnumX", "EnzymeCore", "ExprTools", "FillArrays", "FindFirstFunctions", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "ImplicitDiscreteSolve", "InteractiveUtils", "JumpProcesses", "Libdl", "LinearAlgebra", "Moshi", "NaNMath", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Random", "ReadOnlyDicts", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] -git-tree-sha1 = "96449ee10954eaddb9cd47a0262d1c67e88ee853" +deps = ["ADTypes", "AbstractTrees", "ArrayInterface", "BandedMatrices", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffRules", "DifferentiationInterface", "DocStringExtensions", "DomainSets", "EnumX", "EnzymeCore", "ExprTools", "FillArrays", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "ImplicitDiscreteSolve", "InteractiveUtils", "JumpProcesses", "Libdl", "LinearAlgebra", "Moshi", "NaNMath", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Random", "ReadOnlyDicts", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] +git-tree-sha1 = "d52da5508ed6c42b4e7c01356287d7114f3e13db" uuid = "7771a370-6774-4173-bd38-47e70ca0b839" -version = "1.28.0" +version = "1.33.1" [deps.ModelingToolkitBase.extensions] MTKBifurcationKitExt = "BifurcationKit" @@ -1401,9 +1422,9 @@ version = "1.28.0" [[deps.ModelingToolkitTearing]] deps = ["BipartiteGraphs", "CommonSolve", "DocStringExtensions", "Graphs", "LinearAlgebra", "ModelingToolkitBase", "Moshi", "OffsetArrays", "OrderedCollections", "SciMLBase", "Setfield", "SparseArrays", "StateSelection", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UUIDs"] -git-tree-sha1 = "caa0f038c2ac3b4ece4dc713656199402e75bd50" +git-tree-sha1 = "3ad8028ba31ef212307586416f1b341b5e8d4eb9" uuid = "6bb917b9-1269-42b9-9f7c-b0dca72083ab" -version = "1.12.1" +version = "1.13.3" [[deps.Moshi]] deps = ["ExproniconLite", "Jieko"] @@ -1413,7 +1434,7 @@ version = "0.3.7" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2025.12.2" +version = "2023.12.12" [[deps.MuladdMacro]] git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" @@ -1422,9 +1443,9 @@ version = "0.2.4" [[deps.MultivariatePolynomials]] deps = ["DataStructures", "LinearAlgebra", "MutableArithmetics", "StarAlgebras"] -git-tree-sha1 = "b45f1ed8448ea20885cb4c5029c2a462fe2682bf" +git-tree-sha1 = "4838893d9b035c2f6967c0d533350e1755b58a70" uuid = "102ac46a-7ee4-5c85-9060-abc95bfdeaa3" -version = "0.5.17" +version = "0.5.19" [deps.MultivariatePolynomials.extensions] MultivariatePolynomialsChainRulesCoreExt = "ChainRulesCore" @@ -1445,10 +1466,16 @@ uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" version = "1.7.1" [[deps.NLSolversBase]] -deps = ["ADTypes", "DifferentiationInterface", "FiniteDiff", "LinearAlgebra"] -git-tree-sha1 = "b3f76b463c7998473062992b246045e6961a074e" +deps = ["ADTypes", "DifferentiationInterface", "Distributed", "FiniteDiff", "ForwardDiff"] +git-tree-sha1 = "25a6638571a902ecfb1ae2a18fc1575f86b1d4df" uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" -version = "8.0.0" +version = "7.10.0" + +[[deps.NLsolve]] +deps = ["Distances", "LineSearches", "LinearAlgebra", "NLSolversBase", "Printf", "Reexport"] +git-tree-sha1 = "019f12e9a1a7880459d0173c182e6a99365d7ac1" +uuid = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" +version = "4.5.1" [[deps.NaNMath]] deps = ["OpenLibm_jll"] @@ -1461,10 +1488,10 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.NonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SciMLLogging", "SimpleNonlinearSolve", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "d27bcf0cebf8786edcc2eaa4455c959e680334e7" +deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SciMLLogging", "Setfield", "SimpleNonlinearSolve", "StaticArraysCore", "SymbolicIndexingInterface"] +git-tree-sha1 = "ae0b0f875e4dfda538ab6977ec7939126ee9a1fe" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "4.16.0" +version = "4.19.0" [deps.NonlinearSolve.extensions] NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" @@ -1494,10 +1521,10 @@ version = "4.16.0" Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" [[deps.NonlinearSolveBase]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "LinearAlgebra", "Markdown", "MaybeInplace", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "9323e063ce69851b28e5c96539b2e2024f9a7e4c" +deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "LogExpFunctions", "Markdown", "MaybeInplace", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] +git-tree-sha1 = "a19a5df29ef2b197499fc631fa1a59385ae15262" uuid = "be0214bd-f91f-a760-ac4e-3421ce2b2da0" -version = "2.11.2" +version = "2.25.0" [deps.NonlinearSolveBase.extensions] NonlinearSolveBaseBandedMatricesExt = "BandedMatrices" @@ -1527,15 +1554,15 @@ version = "2.11.2" [[deps.NonlinearSolveFirstOrder]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConcreteStructs", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLJacobianOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "eea7cbe389b168c77df7ff779fb7277019c685c8" +git-tree-sha1 = "ce68820a4f421fb5bee7ec4dcf875aff33886bfb" uuid = "5959db7a-ea39-4486-b5fe-2dd0bf03d60d" -version = "2.0.0" +version = "2.1.1" [[deps.NonlinearSolveQuasiNewton]] deps = ["ArrayInterface", "CommonSolve", "ConcreteStructs", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLOperators", "StaticArraysCore"] -git-tree-sha1 = "ade27e8e9566b6cec63ee62f6a6650a11cf9a2eb" +git-tree-sha1 = "538432ca1aea8bf63db02929bf870501f8a7c64c" uuid = "9a2c21bd-3a47-402d-9113-8faf9a0ee114" -version = "1.12.0" +version = "1.13.1" weakdeps = ["ForwardDiff"] [deps.NonlinearSolveQuasiNewton.extensions] @@ -1543,9 +1570,9 @@ weakdeps = ["ForwardDiff"] [[deps.NonlinearSolveSpectralMethods]] deps = ["CommonSolve", "ConcreteStructs", "LineSearch", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "eafd027b5cd768f19bb5de76c0e908a9065ddd36" +git-tree-sha1 = "a3781e12becdf0ce5520bd97ec617e879bf4e9f2" uuid = "26075421-4e9a-44e1-8bd1-420ed7ad02b2" -version = "1.6.0" +version = "1.7.1" weakdeps = ["ForwardDiff"] [deps.NonlinearSolveSpectralMethods.extensions] @@ -1558,10 +1585,10 @@ uuid = "54ca160b-1b9f-5127-a996-1867f4bc2a2c" version = "0.5.0" [[deps.ODEInterfaceDiffEq]] -deps = ["Compat", "DataStructures", "DiffEqBase", "FunctionWrappers", "LinearAlgebra", "ODEInterface", "Reexport", "SciMLBase"] -git-tree-sha1 = "7ca947a49a7c51d81169059e9960b248007a8a05" +deps = ["Compat", "DataStructures", "DiffEqBase", "FunctionWrappers", "LinearAlgebra", "ODEInterface", "Reexport", "SciMLBase", "SciMLLogging"] +git-tree-sha1 = "38fb6b73dcc72515c856cdbdcafb6419b5ea25c2" uuid = "09606e27-ecf5-54fc-bb29-004bd9f985bf" -version = "3.17.0" +version = "4.0.0" [[deps.ODEInterface_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -1586,14 +1613,14 @@ version = "1.3.6+0" [[deps.OpenBLAS32_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6065c4cff8fee6c6770b277af45d5082baacdba1" +git-tree-sha1 = "dd0d9979377e43918a80486a562ddedcc6d9bdf3" uuid = "656ef2d0-ae68-5445-9ca0-591084a874a2" -version = "0.3.24+0" +version = "0.3.33+0" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.23+5" +version = "0.3.27+1" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] @@ -1614,9 +1641,9 @@ version = "1.6.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "c9cbeda6aceffc52d8a0017e71db27c7a7c0beaf" +git-tree-sha1 = "2ac022577e5eac7da040de17776d51bb770cd895" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.5.5+0" +version = "3.5.6+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -1636,208 +1663,117 @@ uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.8.1" [[deps.OrdinaryDiffEq]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FillArrays", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "MacroTools", "MuladdMacro", "NonlinearSolve", "OrdinaryDiffEqAdamsBashforthMoulton", "OrdinaryDiffEqBDF", "OrdinaryDiffEqCore", "OrdinaryDiffEqDefault", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqExplicitRK", "OrdinaryDiffEqExponentialRK", "OrdinaryDiffEqExtrapolation", "OrdinaryDiffEqFIRK", "OrdinaryDiffEqFeagin", "OrdinaryDiffEqFunctionMap", "OrdinaryDiffEqHighOrderRK", "OrdinaryDiffEqIMEXMultistep", "OrdinaryDiffEqLinear", "OrdinaryDiffEqLowOrderRK", "OrdinaryDiffEqLowStorageRK", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqNordsieck", "OrdinaryDiffEqPDIRK", "OrdinaryDiffEqPRK", "OrdinaryDiffEqQPRK", "OrdinaryDiffEqRKN", "OrdinaryDiffEqRosenbrock", "OrdinaryDiffEqSDIRK", "OrdinaryDiffEqSSPRK", "OrdinaryDiffEqStabilizedIRK", "OrdinaryDiffEqStabilizedRK", "OrdinaryDiffEqSymplecticRK", "OrdinaryDiffEqTsit5", "OrdinaryDiffEqVerner", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "Static", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "89172157d16139165d470602f1e552484b357771" +deps = ["ADTypes", "CommonSolve", "DocStringExtensions", "OrdinaryDiffEqBDF", "OrdinaryDiffEqCore", "OrdinaryDiffEqDefault", "OrdinaryDiffEqRosenbrock", "OrdinaryDiffEqTsit5", "OrdinaryDiffEqVerner", "SciMLBase"] +git-tree-sha1 = 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"RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "ce8db53fd1e4e41c020fd53961e7314f75e4c21c" +deps = ["ADTypes", "ArrayInterface", "DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqSDIRK", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "2a193931b5dc2400f7f4fb7593b23e0aca96a581" uuid = "6ad6398a-0878-4a85-9266-38940aa047c8" -version = "1.10.1" +version = "2.0.0" [[deps.OrdinaryDiffEqCore]] -deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "FastBroadcast", "FastClosures", "FastPower", "FillArrays", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleUnPack", "Static", "StaticArrayInterface", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "4b68f9ca0cfa68cb9ee544df96391d47ca0e62a9" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ConcreteStructs", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "PrecompileTools", "Preferences", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "86c210d134f09139a294f0329006d6cc20275650" uuid = "bbf590c4-e513-4bbe-9b18-05decba2e5d8" -version = "1.36.0" +version = "4.0.0" [deps.OrdinaryDiffEqCore.extensions] - OrdinaryDiffEqCoreEnzymeCoreExt = "EnzymeCore" OrdinaryDiffEqCoreMooncakeExt = "Mooncake" + OrdinaryDiffEqCoreSparseArraysExt = "SparseArrays" [deps.OrdinaryDiffEqCore.weakdeps] - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[deps.OrdinaryDiffEqDefault]] deps = ["ADTypes", "DiffEqBase", "EnumX", "LinearAlgebra", "LinearSolve", "OrdinaryDiffEqBDF", "OrdinaryDiffEqCore", "OrdinaryDiffEqRosenbrock", "OrdinaryDiffEqTsit5", "OrdinaryDiffEqVerner", "PrecompileTools", "Preferences", "Reexport", "SciMLBase"] -git-tree-sha1 = "7d5ddeee97e1bdcc848f1397cbc3d03bd57f33e7" +git-tree-sha1 = "c2ad58656aff6d468109df04a246b018e92b21d8" uuid = "50262376-6c5a-4cf5-baba-aaf4f84d72d7" -version = "1.8.0" +version = "2.1.0" [[deps.OrdinaryDiffEqDifferentiation]] -deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FiniteDiff", "ForwardDiff", 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"Reexport", "SciMLBase", "TruncatedStacktraces"] -git-tree-sha1 = "4c0633f587395d7aaec0679dc649eb03fcc74e73" -uuid = "9286f039-9fbf-40e8-bf65-aa933bdc4db0" -version = "1.4.0" - -[[deps.OrdinaryDiffEqExponentialRK]] -deps = ["ADTypes", "DiffEqBase", "ExponentialUtilities", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "RecursiveArrayTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "3b81416ff11e55ea0ae7b449efc818256d9d450b" -uuid = "e0540318-69ee-4070-8777-9e2de6de23de" -version = "1.8.0" - [[deps.OrdinaryDiffEqExtrapolation]] -deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "FastPower", "LinearSolve", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "Polyester", "RecursiveArrayTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "9e1b11cf448a2c1bca640103c1c848a20aa2f967" +deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "FastPower", "LinearSolve", "MuladdMacro", "OrdinaryDiffEqCore", 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"PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase"] +git-tree-sha1 = "803334224154e4a2a9d984547dd4449d3ca71c63" uuid = "43230ef6-c299-4910-a778-202eb28ce4ce" -version = "1.18.1" +version = "2.0.0" + +[[deps.OrdinaryDiffEqRosenbrockTableaus]] +git-tree-sha1 = "66acd57301ea9c79ff92b13b72135af258c141ab" +uuid = "b4bd8bb3-f80f-41d2-9b21-73a655b304b9" +version = "2.0.0" [[deps.OrdinaryDiffEqSDIRK]] -deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] -git-tree-sha1 = "20caa72c004414435fb5769fadb711e96ed5bcd4" +deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "8df990b85ea063a20df3f1b1dddab9d0afec985c" uuid = "2d112036-d095-4a1e-ab9a-08536f3ecdbf" -version = "1.7.0" +version = "2.0.0" [[deps.OrdinaryDiffEqSIMDRK]] -deps = ["MuladdMacro", "OrdinaryDiffEqCore", "Reexport", "SLEEFPirates", "Static", "UnPack", "VectorizationBase"] -git-tree-sha1 = "fb521b8b352d534b7ac2558e8ffda9e2d3378090" +deps = ["FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "Reexport", "SLEEFPirates", "VectorizationBase"] +git-tree-sha1 = "c47f690f15a98dfacfa7b3dfcbc91bfc6a9bfb5c" uuid = "dc97f408-7a72-40e4-9b0d-228a53b292f8" -version = "1.1.0" - -[[deps.OrdinaryDiffEqSSPRK]] -deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static", "StaticArrays"] -git-tree-sha1 = "3bce87977264916bd92455754ab336faec68bf8a" -uuid = "669c94d9-1f4b-4b64-b377-1aa079aa2388" -version = "1.7.0" - 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-version = "1.7.0" +version = "2.0.0" [[deps.OrdinaryDiffEqTsit5]] -deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static", "TruncatedStacktraces"] -git-tree-sha1 = "778c7d379265f17f40dbe9aaa6f6a2a08bc7fa3e" +deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "d9cedcfa2cdae8859b4510b9d01ada9852cd6d9d" uuid = "b1df2697-797e-41e3-8120-5422d3b24e4a" -version = "1.5.0" +version = "2.0.0" [[deps.OrdinaryDiffEqVerner]] -deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static", "TruncatedStacktraces"] -git-tree-sha1 = "185578fa7c38119d4318326f9375f1cba0f0ce53" +deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "fb8ae6a290beed2ef61fa2e7571d921e1100c365" uuid = "79d7bb75-1356-48c1-b8c0-6832512096c2" -version = "1.6.0" +version = "2.0.0" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -1856,15 +1792,15 @@ weakdeps = ["StatsBase"] [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "0662b083e11420952f2e62e17eddae7fc07d5997" +git-tree-sha1 = "58e5ed5e386e156bd93e86b305ebd21ac63d2d04" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" -version = "1.57.0+0" +version = "1.57.1+0" [[deps.ParameterizedFunctions]] deps = ["DataStructures", "DiffEqBase", "DocStringExtensions", "Latexify", "LinearAlgebra", "ModelingToolkit", "ModelingToolkitBase", "Reexport", "SciMLBase", "SymbolicUtils", "Symbolics"] -git-tree-sha1 = "a09136faf71469ce2545949c8466ab46f3878cb7" +git-tree-sha1 = "42fd879e2e662070397bd067a94ce9c98f8353f0" uuid = "65888b18-ceab-5e60-b2b9-181511a3b968" -version = "5.22.0" +version = "5.24.0" [[deps.Parameters]] deps = ["OrderedCollections", "UnPack"] @@ -1874,9 +1810,9 @@ version = "0.12.3" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "7d2f8f21da5db6a806faf7b9b292296da42b2810" +git-tree-sha1 = "5d5e0a78e971354b1c7bff0655d11fdc1b0e12c8" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.3" +version = "2.8.4" [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] @@ -1885,9 +1821,13 @@ uuid = "30392449-352a-5448-841d-b1acce4e97dc" version = "0.44.2+0" [[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.10.0" +version = "1.11.0" +weakdeps = ["REPL"] + + [deps.Pkg.extensions] + REPLExt = "REPL" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1927,23 +1867,11 @@ git-tree-sha1 = "67afbcbe9e184d6729a92a022147ed4cf972ca7b" uuid = "e409e4f3-bfea-5376-8464-e040bb5c01ab" version = "0.4.7" -[[deps.Polyester]] -deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "16bbc30b5ebea91e9ce1671adc03de2832cff552" -uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.19" - -[[deps.PolyesterWeave]] -deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] -git-tree-sha1 = "645bed98cd47f72f67316fd42fc47dee771aefcd" -uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad" -version = "0.2.2" - [[deps.PreallocationTools]] deps = ["Adapt", "ArrayInterface", "PrecompileTools"] -git-tree-sha1 = "c05b4c6325262152483a1ecb6c69846d2e01727b" +git-tree-sha1 = "e16b73bf892c55d16d53c9c0dbd0fb31cb7e25da" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "0.4.34" +version = "1.2.0" [deps.PreallocationTools.extensions] PreallocationToolsForwardDiffExt = "ForwardDiff" @@ -1976,6 +1904,7 @@ version = "0.5.7" [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" +version = "1.11.0" [[deps.PtrArrays]] git-tree-sha1 = "4fbbafbc6251b883f4d2705356f3641f3652a7fe" @@ -2025,12 +1954,14 @@ version = "2.11.3" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" [[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" +version = "1.11.0" [[deps.Random]] deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +version = "1.11.0" [[deps.ReadOnlyArrays]] git-tree-sha1 = "e6f7ddf48cf141cb312b078ca21cb2d29d0dc11d" @@ -2057,16 +1988,19 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "LinearAlgebra", "PrecompileTools", "RecipesBase", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "76a9c4d3f7b256dd34074e714ffe0ced8d3d21de" +git-tree-sha1 = "57b6fb3932fc8d1fc911f840d2c9de5fe3ba5008" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.50.0" +version = "4.3.0" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsCUDAExt = "CUDA" RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsFastBroadcastPolyesterExt = ["FastBroadcast", "Polyester"] RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsKernelAbstractionsExt = "KernelAbstractions" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsMooncakeExt = "Mooncake" RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] RecursiveArrayToolsStatisticsExt = "Statistics" @@ -2076,11 +2010,14 @@ version = "3.50.0" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" @@ -2136,15 +2073,15 @@ weakdeps = ["Plots"] [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "7257165d5477fd1025f7cb656019dcb6b0512c38" +git-tree-sha1 = "cfcdc949c4660544ab0fdeed169561cb22f835f4" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.17" +version = "0.5.18" [[deps.SCCNonlinearSolve]] deps = ["CommonSolve", "PrecompileTools", "Reexport", "SciMLBase", "SymbolicIndexingInterface"] -git-tree-sha1 = "922db5c9c2ac78c68ce62edffefc61a3add303a7" +git-tree-sha1 = "521a298294a6fd11068df0148b4d57bb31550453" uuid = "9dfe8606-65a1-4bb3-9748-cb89d1561431" -version = "1.12.0" +version = "1.13.0" [deps.SCCNonlinearSolve.extensions] SCCNonlinearSolveChainRulesCoreExt = "ChainRulesCore" @@ -2174,10 +2111,10 @@ uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" version = "0.6.43" [[deps.SciMLBase]] -deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Moshi", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "bdbc7c751d36fdb104d437361950d884d489af85" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "Random", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] +git-tree-sha1 = "450a8405f96d0a7c6caabed0852def06ba8c6bf1" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.153.1" +version = "3.7.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2185,7 +2122,6 @@ version = "2.153.1" SciMLBaseDistributionsExt = "Distributions" SciMLBaseEnzymeExt = "Enzyme" SciMLBaseForwardDiffExt = "ForwardDiff" - SciMLBaseMLStyleExt = "MLStyle" SciMLBaseMakieExt = "Makie" SciMLBaseMeasurementsExt = "Measurements" SciMLBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" @@ -2205,7 +2141,6 @@ version = "2.153.1" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - MLStyle = "d8e11817-5142-5d16-987a-aa16d5891078" Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" @@ -2226,9 +2161,9 @@ version = "0.1.3" [[deps.SciMLJacobianOperators]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DifferentiationInterface", "FastClosures", "LinearAlgebra", "SciMLBase", "SciMLOperators"] -git-tree-sha1 = "e96d5e96debf7f80a50d0b976a13dea556ccfd3a" +git-tree-sha1 = "7156a5b51cba1bea33a82a036939ead4131f92bc" uuid = "19f34311-ddf3-4b8b-af20-060888a46c0e" -version = "0.1.12" +version = "0.1.13" [[deps.SciMLLogging]] deps = ["Logging", "LoggingExtras", "Preferences"] @@ -2244,9 +2179,9 @@ version = "1.9.1" [[deps.SciMLOperators]] deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra"] -git-tree-sha1 = "234869cf9fee9258a95464b7a7065cc7be84db00" +git-tree-sha1 = "0e34162268883db01c04f988895a80d0659071bb" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "1.16.0" +version = "1.17.0" weakdeps = ["SparseArrays", "StaticArraysCore"] [deps.SciMLOperators.extensions] @@ -2272,6 +2207,7 @@ version = "1.3.0" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" +version = "1.11.0" [[deps.Setfield]] deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] @@ -2292,9 +2228,9 @@ version = "1.2.0" [[deps.SimpleNonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "744c3f0fb186ad28376199c1e72ca39d0c614b5d" +git-tree-sha1 = "d688de789b7e643326caf9a1051376dadbcd8873" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "2.11.0" +version = "2.11.1" [deps.SimpleNonlinearSolve.extensions] SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" @@ -2312,13 +2248,9 @@ git-tree-sha1 = "be8eeac05ec97d379347584fa9fe2f5f76795bcb" uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d" version = "0.9.5" -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" - [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" +version = "1.11.0" [[deps.SortingAlgorithms]] deps = ["DataStructures"] @@ -2329,26 +2261,29 @@ version = "1.2.2" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -version = "1.10.0" +version = "1.11.0" [[deps.SparseMatrixColorings]] deps = ["ADTypes", "DocStringExtensions", "LinearAlgebra", "PrecompileTools", "Random", "SparseArrays"] -git-tree-sha1 = "1c1be8c6fdfaf9b6c9e156c509e672953b8e6af7" +git-tree-sha1 = "f63d76c7b7c329cf11badd564fd8ba877b09c3fe" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.4.26" +version = "0.4.27" [deps.SparseMatrixColorings.extensions] - SparseMatrixColoringsCUDAExt = "CUDA" + SparseMatrixColoringsCUDAExt = ["CUDA", "cuSPARSE"] SparseMatrixColoringsCliqueTreesExt = "CliqueTrees" SparseMatrixColoringsColorsExt = "Colors" + SparseMatrixColoringsGPUArraysExt = "GPUArrays" SparseMatrixColoringsJuMPExt = ["JuMP", "MathOptInterface"] [deps.SparseMatrixColorings.weakdeps] CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" + GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" JuMP = "4076af6c-e467-56ae-b986-b466b2749572" MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" + cuSPARSE = "b26da814-b3bc-49ef-b0ee-c816305aa060" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -2376,9 +2311,9 @@ version = "0.3.0" [[deps.StateSelection]] deps = ["BipartiteGraphs", "DocStringExtensions", "FindFirstFunctions", "Graphs", "LinearAlgebra", "OrderedCollections", "Setfield", "SparseArrays"] -git-tree-sha1 = "a09c34b564f56f689f42f50e97c3a8dae35344ad" +git-tree-sha1 = "824641f6d414f0885200e034e3853c3c2f61ac43" uuid = "64909d44-ed92-46a8-bbd9-f047dfbdc84b" -version = "1.9.1" +version = "1.9.2" [deps.StateSelection.extensions] StateSelectionDeepDiffsExt = "DeepDiffs" @@ -2388,15 +2323,15 @@ version = "1.9.1" [[deps.Static]] deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools", "SciMLPublic"] -git-tree-sha1 = "49440414711eddc7227724ae6e570c7d5559a086" +git-tree-sha1 = "bb072715f158b59ad8819ff80da5ffa90cce6ceb" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.3.1" +version = "1.4.0" [[deps.StaticArrayInterface]] deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "SciMLPublic", "Static"] -git-tree-sha1 = "aa1ea41b3d45ac449d10477f65e2b40e3197a0d2" +git-tree-sha1 = "2a635e15d5035c53b345077c947f31ff91744078" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.9.0" +version = "1.10.0" weakdeps = ["OffsetArrays", "StaticArrays"] [deps.StaticArrayInterface.extensions] @@ -2423,9 +2358,14 @@ uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" version = "1.4.4" [[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] +deps = ["LinearAlgebra"] +git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.10.0" +version = "1.11.1" +weakdeps = ["SparseArrays"] + + [deps.Statistics.extensions] + SparseArraysExt = ["SparseArrays"] [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -2453,12 +2393,6 @@ version = "1.5.2" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" -[[deps.StrideArraysCore]] -deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "83151ba8065a73f53ca2ae98bc7274d817aa30f2" -uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.5.8" - [[deps.StringEncodings]] deps = ["Libiconv_jll"] git-tree-sha1 = "b765e46ba27ecf6b44faf70df40c57aa3a547dcb" @@ -2486,26 +2420,30 @@ version = "0.7.3" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" + [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse32_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "94fcd6e398534febe67795e7df45c76aa3c34851" +deps = ["Artifacts", "JLLWrappers", "Libdl", "libblastrampoline_jll"] +git-tree-sha1 = "1d43a4874b879f381b8a3a978f0ebe837cfd0922" uuid = "ca45d3f4-326b-53b0-9957-23b75aacb3f2" -version = "5.10.1+0" +version = "7.12.1+0" [[deps.SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "7.2.1+1" +version = "7.7.0+0" [[deps.Sundials]] -deps = ["Accessors", "ArrayInterface", "CEnum", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "LinearSolve", "Logging", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SparseArrays", "Sundials_jll", "SymbolicIndexingInterface"] -git-tree-sha1 = "2d27edb89b7c555a57b8f22bfde92d6828d11cee" +deps = ["Accessors", "ArrayInterface", "CEnum", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "LinearSolve", "Logging", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLLogging", "SparseArrays", "Sundials_jll", "SymbolicIndexingInterface"] +git-tree-sha1 = "4853f12fa4333ab235d939a6d38b368d35f2f492" uuid = "c3572dad-4567-51f8-b174-8c6c989267f4" -version = "5.1.0" +version = "6.1.0" [[deps.Sundials_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS32_jll", "SuiteSparse32_jll"] @@ -2533,9 +2471,9 @@ version = "1.1.0" [[deps.SymbolicUtils]] deps = ["AbstractTrees", "ArrayInterface", "Combinatorics", "ConstructionBase", "DataStructures", "Dictionaries", "DocStringExtensions", "DynamicPolynomials", "EnumX", "ExproniconLite", "Graphs", "LinearAlgebra", "MacroTools", "Moshi", "MultivariatePolynomials", "MutableArithmetics", "NaNMath", "PrecompileTools", "ReadOnlyArrays", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "TaskLocalValues", "TermInterface", "WeakCacheSets"] -git-tree-sha1 = "1f349efacf48e218cd6bd5273c1e82f7728df215" +git-tree-sha1 = "ae8741c34009171ee8e46d5c209cf0a15c469928" uuid = "d1185830-fcd6-423d-90d6-eec64667417b" -version = "4.23.1" +version = "4.26.0" [deps.SymbolicUtils.extensions] SymbolicUtilsChainRulesCoreExt = "ChainRulesCore" @@ -2551,9 +2489,9 @@ version = "4.23.1" [[deps.Symbolics]] deps = ["ADTypes", "AbstractPlutoDingetjes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "Moshi", "MultivariatePolynomials", "MutableArithmetics", "NaNMath", "PrecompileTools", "Preferences", "Primes", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLPublic", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] -git-tree-sha1 = "d319f764960a00a6922168e10a12db90880afb27" +git-tree-sha1 = "85bb4be51a7e90e531b1faa926b9497f436ca535" uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7" -version = "7.18.0" +version = "7.21.0" [deps.Symbolics.extensions] SymbolicsD3TreesExt = "D3Trees" @@ -2623,12 +2561,7 @@ version = "2.0.0" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.ThreadingUtilities]] -deps = ["ManualMemory"] -git-tree-sha1 = "d969183d3d244b6c33796b5ed01ab97328f2db85" -uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" -version = "0.5.5" +version = "1.11.0" [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] @@ -2661,6 +2594,7 @@ version = "1.6.1" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +version = "1.11.0" [[deps.UnPack]] git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" @@ -2669,6 +2603,7 @@ version = "1.0.2" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +version = "1.11.0" [[deps.UnicodeFun]] deps = ["REPL"] @@ -2795,9 +2730,9 @@ version = "0.9.12+0" [[deps.Xorg_libpciaccess_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "4909eb8f1cbf6bd4b1c30dd18b2ead9019ef2fad" +git-tree-sha1 = "58972370b81423fc546c56a60ed1a009450177c3" uuid = "a65dc6b1-eb27-53a1-bb3e-dea574b5389e" -version = "0.18.1+0" +version = "0.19.0+0" [[deps.Xorg_libxcb_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXau_jll", "Xorg_libXdmcp_jll"] @@ -2855,9 +2790,9 @@ version = "1.4.7+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "00af7ebdc563c9217ecc67776d1bbf037dbcebf4" +git-tree-sha1 = "429722587208f02b1cecbddcd20133df2f1ed796" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.44.0+0" +version = "2.47.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2908,9 +2843,9 @@ version = "0.61.1+0" [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" +git-tree-sha1 = "850b06095ee71f0135d644ffd8a52850699581ed" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.13.1+0" +version = "3.13.3+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] @@ -2955,9 +2890,9 @@ version = "1.28.1+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "e2a7072fc0cdd7949528c1455a3e5da4122e1153" +git-tree-sha1 = "e51150d5ab85cee6fc36726850f0e627ad2e4aba" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.56+0" +version = "1.6.58+0" [[deps.libsodium_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2986,7 +2921,7 @@ version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.52.0+1" +version = "1.59.0+0" [[deps.oneTBB_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] @@ -2997,7 +2932,7 @@ version = "2022.0.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.6.1+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] diff --git a/benchmarks/NonStiffODE/Pleiades_wpd.jmd b/benchmarks/NonStiffODE/Pleiades_wpd.jmd index e3c6086d2..9d2b1517e 100644 --- a/benchmarks/NonStiffODE/Pleiades_wpd.jmd +++ b/benchmarks/NonStiffODE/Pleiades_wpd.jmd @@ -5,6 +5,8 @@ author: Chris Rackauckas ```julia using OrdinaryDiffEq, ODEInterfaceDiffEq, LSODA, Sundials, DiffEqDevTools, IRKGaussLegendre +using OrdinaryDiffEqAdamsBashforthMoulton, OrdinaryDiffEqExtrapolation, OrdinaryDiffEqHighOrderRK, OrdinaryDiffEqLowOrderRK +using SciMLLogging f = (du, u, p, t) -> begin @inbounds begin @@ -155,7 +157,7 @@ setups = [Dict(:alg=>Tsit5()) solnames = ["Tsit5", "Vern9", "VCABM", "IRKGL16", "IRKGL16 SIMD", "AitkenNeville", "Midpoint Deuflhard", "Midpoint Hairer Wanner"] wp = WorkPrecisionSet(prob, abstols, reltols, setups; appxsol = test_sol, names = solnames, - save_everystep = false, verbose = false, numruns = 100) + save_everystep = false, verbose = SciMLLogging.None(), numruns = 100) plot(wp) ``` @@ -174,7 +176,7 @@ setups = [Dict(:alg=>ExtrapolationMidpointDeuflhard( sequence = :bulirsch, threading = true))] solnames = ["Deuflhard", "No threads", "standard", "Romberg", "Bulirsch"] wp = WorkPrecisionSet(prob, abstols, reltols, setups; appxsol = test_sol, names = solnames, - save_everystep = false, verbose = false, numruns = 100) + save_everystep = false, verbose = SciMLLogging.None(), numruns = 100) plot(wp) ``` @@ -191,7 +193,7 @@ setups = [Dict(:alg=>ExtrapolationMidpointHairerWanner( min_order = 5, max_order = 7, init_order = 6, threading = true))] solnames = ["1", "2", "3", "4", "5"] wp = WorkPrecisionSet(prob, abstols, reltols, setups; appxsol = test_sol, names = solnames, - save_everystep = false, verbose = false, numruns = 100) + save_everystep = false, verbose = SciMLLogging.None(), numruns = 100) plot(wp) ``` diff --git a/benchmarks/NonStiffODE/Project.toml b/benchmarks/NonStiffODE/Project.toml index efd85f3a0..f797bc397 100644 --- a/benchmarks/NonStiffODE/Project.toml +++ b/benchmarks/NonStiffODE/Project.toml @@ -8,30 +8,44 @@ ModelingToolkit = "961ee093-0014-501f-94e3-6117800e7a78" ODEInterface = "54ca160b-1b9f-5127-a996-1867f4bc2a2c" ODEInterfaceDiffEq = "09606e27-ecf5-54fc-bb29-004bd9f985bf" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" +OrdinaryDiffEqAdamsBashforthMoulton = "89bda076-bce5-4f1c-845f-551c83cdda9a" OrdinaryDiffEqCore = "bbf590c4-e513-4bbe-9b18-05decba2e5d8" +OrdinaryDiffEqExtrapolation = "becaefa8-8ca2-5cf9-886d-c06f3d2bd2c4" +OrdinaryDiffEqFIRK = "5960d6e9-dd7a-4743-88e7-cf307b64f125" +OrdinaryDiffEqHighOrderRK = "d28bc4f8-55e1-4f49-af69-84c1a99f0f58" +OrdinaryDiffEqLowOrderRK = "1344f307-1e59-4825-a18e-ace9aa3fa4c6" OrdinaryDiffEqSIMDRK = "dc97f408-7a72-40e4-9b0d-228a53b292f8" +OrdinaryDiffEqVerner = "79d7bb75-1356-48c1-b8c0-6832512096c2" ParameterizedFunctions = "65888b18-ceab-5e60-b2b9-181511a3b968" Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" SciMLBenchmarks = "31c91b34-3c75-11e9-0341-95557aab0344" +SciMLLogging = "a6db7da4-7206-11f0-1eab-35f2a5dbe1d1" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" [compat] -DiffEqBase = "6" -DiffEqDevTools = "2.30" -IRKGaussLegendre = "0.2" +DiffEqBase = "7" +DiffEqDevTools = "3" +IRKGaussLegendre = "1" LSODA = "0.7" ModelingToolkit = "11" ODEInterface = "0.5" -ODEInterfaceDiffEq = "3.10" -OrdinaryDiffEq = "6" -OrdinaryDiffEqCore = "1" -OrdinaryDiffEqSIMDRK = "1" +ODEInterfaceDiffEq = "4" +OrdinaryDiffEq = "7" +OrdinaryDiffEqAdamsBashforthMoulton = "2" +OrdinaryDiffEqCore = "4" +OrdinaryDiffEqExtrapolation = "2" +OrdinaryDiffEqFIRK = "2" +OrdinaryDiffEqHighOrderRK = "2" +OrdinaryDiffEqLowOrderRK = "2" +OrdinaryDiffEqSIMDRK = "2" +OrdinaryDiffEqVerner = "2" ParameterizedFunctions = "5.3" Plots = "1.4" SciMLBenchmarks = "0.1" +SciMLLogging = "1, 2" StaticArrays = "1" -Sundials = "5" +Sundials = "6" Symbolics = "7" diff --git a/benchmarks/NonStiffODE/RigidBody_wpd.jmd b/benchmarks/NonStiffODE/RigidBody_wpd.jmd index ed143dceb..b4c0a336b 100644 --- a/benchmarks/NonStiffODE/RigidBody_wpd.jmd +++ b/benchmarks/NonStiffODE/RigidBody_wpd.jmd @@ -6,6 +6,8 @@ author: Chris Rackauckas ```julia using OrdinaryDiffEq, ParameterizedFunctions, ODEInterfaceDiffEq, LSODA, Sundials, DiffEqDevTools, StaticArrays, OrdinaryDiffEqSIMDRK, IRKGaussLegendre +using OrdinaryDiffEqAdamsBashforthMoulton, OrdinaryDiffEqExtrapolation, OrdinaryDiffEqHighOrderRK, OrdinaryDiffEqLowOrderRK +using SciMLLogging k(t) = 0.25*sin(t)^2 @@ -108,7 +110,7 @@ solnames = ["Tsit5", "Vern9", "VCABM", "Vern9 Static", "VCABM Static", "AitkenNeville", "Midpoint Deuflhard", "Midpoint Hairer Wanner"] wp = WorkPrecisionSet( probs, abstols, reltols, setups; appxsol = test_sol, names = solnames, - save_everystep = false, verbose = false, numruns = 100) + save_everystep = false, verbose = SciMLLogging.None(), numruns = 100) plot(wp) ``` @@ -128,7 +130,7 @@ setups = [Dict(:alg=>ExtrapolationMidpointDeuflhard( solnames = ["Deuflhard", "No threads", "standard", "Romberg", "Bulirsch"] wp = WorkPrecisionSet( probs, abstols, reltols, setups; appxsol = test_sol, names = solnames, - save_everystep = false, verbose = false, numruns = 100) + save_everystep = false, verbose = SciMLLogging.None(), numruns = 100) plot(wp) ``` @@ -146,7 +148,7 @@ setups = [Dict(:alg=>ExtrapolationMidpointHairerWanner( solnames = ["1", "2", "3", "4", "5"] wp = WorkPrecisionSet( probs, abstols, reltols, setups; appxsol = test_sol, names = solnames, - save_everystep = false, verbose = false, numruns = 100) + save_everystep = false, verbose = SciMLLogging.None(), numruns = 100) plot(wp) ``` diff --git a/benchmarks/NonStiffODE/ThreeBody_wpd.jmd b/benchmarks/NonStiffODE/ThreeBody_wpd.jmd index cd1672c55..e7cc1d783 100644 --- a/benchmarks/NonStiffODE/ThreeBody_wpd.jmd +++ b/benchmarks/NonStiffODE/ThreeBody_wpd.jmd @@ -6,6 +6,8 @@ author: Chris Rackauckas ```julia using OrdinaryDiffEq, ODEInterfaceDiffEq, LSODA, Sundials, DiffEqDevTools, StaticArrays, IRKGaussLegendre +using OrdinaryDiffEqAdamsBashforthMoulton, OrdinaryDiffEqExtrapolation, OrdinaryDiffEqFIRK, OrdinaryDiffEqHighOrderRK, OrdinaryDiffEqLowOrderRK, OrdinaryDiffEqVerner +using SciMLLogging using Plots; gr() @@ -68,8 +70,8 @@ See that it's periodic in the chosen timespan: ```julia sol = solve(prob, Vern9(), abstol = 1e-14, reltol = 1e-14) -@show sol[1] - sol[end] -@show sol[end] - prob.u0; +@show sol.u[1] - sol.u[end] +@show sol.u[end] - prob.u0; ``` This three-body problem is known to be a tough problem. Let's see how the algorithms do at standard tolerances. @@ -144,7 +146,7 @@ plot(wp) ```julia wp = WorkPrecisionSet(probs, abstols, reltols, setups; appxsol = test_sol, - dense = false, numruns = 100, verbose = false) + dense = false, numruns = 100, verbose = SciMLLogging.None()) plot(wp) ``` @@ -206,7 +208,7 @@ solnames = ["Tsit5", "Vern9", "IRKGL16", "IRKGL16 SIMD", "AitkenNeville", "Midpoint Deuflhard", "Midpoint Hairer Wanner"] wp = WorkPrecisionSet( probs, abstols, reltols, setups; appxsol = test_sol, names = solnames, - save_everystep = false, verbose = false, numruns = 100) + save_everystep = false, verbose = SciMLLogging.None(), numruns = 100) plot(wp) ``` @@ -226,7 +228,7 @@ setups = [Dict(:alg=>ExtrapolationMidpointDeuflhard( solnames = ["Deuflhard", "No threads", "standard", "Romberg", "Bulirsch"] wp = WorkPrecisionSet( probs, abstols, reltols, setups; appxsol = test_sol, names = solnames, - save_everystep = false, verbose = false, numruns = 100) + save_everystep = false, verbose = SciMLLogging.None(), numruns = 100) plot(wp) ``` @@ -244,7 +246,7 @@ setups = [Dict(:alg=>ExtrapolationMidpointHairerWanner( solnames = ["1", "2", "3", "4", "5"] wp = WorkPrecisionSet( probs, abstols, reltols, setups; appxsol = test_sol, names = solnames, - save_everystep = false, verbose = false, numruns = 100) + save_everystep = false, verbose = SciMLLogging.None(), numruns = 100) plot(wp) ``` diff --git a/benchmarks/NonStiffODE/linear_wpd.jmd b/benchmarks/NonStiffODE/linear_wpd.jmd index 8819a2700..2c6571615 100644 --- a/benchmarks/NonStiffODE/linear_wpd.jmd +++ b/benchmarks/NonStiffODE/linear_wpd.jmd @@ -24,6 +24,8 @@ rapid development has its advantages. ```julia using OrdinaryDiffEq, OrdinaryDiffEqCore, Sundials, DiffEqDevTools, Plots, ODEInterfaceDiffEq, LSODA +using OrdinaryDiffEqAdamsBashforthMoulton, OrdinaryDiffEqExtrapolation, OrdinaryDiffEqHighOrderRK, OrdinaryDiffEqLowOrderRK, OrdinaryDiffEqVerner +using SciMLLogging using Random Random.seed!(123) gr() @@ -188,7 +190,7 @@ setups = [Dict(:alg=>DP5()) solnames = ["DifferentialEquations"; "ODEInterface"; "DifferentialEquations RK4"; "DifferentialEquations Tsit5"] wp = WorkPrecisionSet(prob, abstols, reltols, setups; names = solnames, - save_everystep = false, verbose = false, numruns = 100) + save_everystep = false, verbose = SciMLLogging.None(), numruns = 100) plot(wp) ``` @@ -209,7 +211,7 @@ setups = [Dict(:alg=>Tsit5()) solnames = ["Tsit5", "Vern9", "VCABM", "AitkenNeville", "Midpoint Deuflhard", "Midpoint Hairer Wanner"] wp = WorkPrecisionSet(prob, abstols, reltols, setups; names = solnames, - save_everystep = false, verbose = false, numruns = 100) + save_everystep = false, verbose = SciMLLogging.None(), numruns = 100) plot(wp) ``` @@ -228,7 +230,7 @@ setups = [Dict(:alg=>ExtrapolationMidpointDeuflhard( sequence = :bulirsch, threading = true))] solnames = ["Deuflhard", "No threads", "standard", "Romberg", "Bulirsch"] wp = WorkPrecisionSet(prob, abstols, reltols, setups; names = solnames, - save_everystep = false, verbose = false, numruns = 100) + save_everystep = false, verbose = SciMLLogging.None(), numruns = 100) plot(wp) ``` @@ -245,7 +247,7 @@ setups = [Dict(:alg=>ExtrapolationMidpointHairerWanner( min_order = 5, max_order = 7, init_order = 6, threading = true))] solnames = ["1", "2", "3", "4", "5"] wp = WorkPrecisionSet(prob, abstols, reltols, setups; names = solnames, - save_everystep = false, verbose = false, numruns = 100) + save_everystep = false, verbose = SciMLLogging.None(), numruns = 100) plot(wp) ``` @@ -264,7 +266,7 @@ setups = [Dict(:alg=>Tsit5()) Dict(:alg=>CVODE_Adams())] wp = WorkPrecisionSet(prob, abstols, reltols, setups; - save_everystep = false, verbose = false, numruns = 100) + save_everystep = false, verbose = SciMLLogging.None(), numruns = 100) plot(wp) ``` diff --git a/benchmarks/NonStiffSDE/HighOrderWeakSDEWorkPrecision.jmd b/benchmarks/NonStiffSDE/HighOrderWeakSDEWorkPrecision.jmd index 531410b81..ee1a71e0a 100644 --- a/benchmarks/NonStiffSDE/HighOrderWeakSDEWorkPrecision.jmd +++ b/benchmarks/NonStiffSDE/HighOrderWeakSDEWorkPrecision.jmd @@ -20,6 +20,7 @@ with a known analytical result $\mathbb{E}[X_1(t)^2] = \exp(-t)$. ```julia using StochasticDiffEq, DiffEqDevTools, Random, Plots +using SciMLLogging gr() u₀ = [1.0, 1.0] @@ -56,14 +57,14 @@ seed = 100 Random.seed!(seed) seeds = rand(UInt, numtraj) -function prob_func(prob, i, repeat) - remake(prob, seed = seeds[i]) +function prob_func(prob, ctx) + remake(prob, seed = seeds[ctx.i]) end h2(z) = z^2 ensemble_prob = EnsembleProblem(prob; - output_func = (sol, i) -> (h2(sol[end][1]), false), + output_func = (sol, ctx) -> (h2(sol.u[end][1]), false), prob_func = prob_func) dts = 1 .// 2 .^ (3:-1:0) @@ -127,7 +128,7 @@ appxsol_setup = Dict(:alg => EM(), :dt => test_dt) wp = WorkPrecisionSet(ensemble_prob, abstols, reltols, setups, test_dt; - maxiters = 1e7, verbose = false, + maxiters = 1e7, verbose = SciMLLogging.None(), save_everystep = false, save_start = false, appxsol_setup = appxsol_setup, expected_value = exp(-3.0), @@ -171,8 +172,8 @@ Random.seed!(seed) numtraj_bruss = 100 seeds_bruss = rand(UInt, numtraj_bruss) -function prob_func_bruss(prob, i, repeat) - Random.seed!(seeds_bruss[i]) +function prob_func_bruss(prob, ctx) + Random.seed!(seeds_bruss[ctx.i]) W = WienerProcess(0.0, 0.0, 0.0) remake(prob, noise = W) end @@ -235,7 +236,7 @@ appxsol_setup_bruss = Dict(:alg => EM(), :dt => test_dt_bruss) wp_bruss = WorkPrecisionSet(ensembleprob_bruss2, abstols_bruss, reltols_bruss, setups_bruss, test_dt_bruss; - maxiters = 1e7, verbose = false, + maxiters = 1e7, verbose = SciMLLogging.None(), save_everystep = false, save_start = false, appxsol_setup = appxsol_setup_bruss, trajectories = numtraj_bruss, error_estimate = :weak_final) diff --git a/benchmarks/NonStiffSDE/LotkaVolterraSDE.jmd b/benchmarks/NonStiffSDE/LotkaVolterraSDE.jmd index 83b368f16..cc5f56218 100644 --- a/benchmarks/NonStiffSDE/LotkaVolterraSDE.jmd +++ b/benchmarks/NonStiffSDE/LotkaVolterraSDE.jmd @@ -5,6 +5,7 @@ author: Chris Rackauckas ```julia using StochasticDiffEq, DiffEqDevTools, ParameterizedFunctions +using SciMLLogging using Plots; gr() const N = 100 @@ -47,7 +48,7 @@ test_dt = 1/10^2 appxsol_setup = Dict(:alg=>SRIW1(), :abstol=>1e-4, :reltol=>1e-4) wp = WorkPrecisionSet(prob, abstols, reltols, setups, test_dt; maxiters = 1e7, - verbose = false, save_everystep = false, + verbose = SciMLLogging.None(), save_everystep = false, parallel_type = :threads, appxsol_setup = appxsol_setup, numruns_error = N, error_estimate = :final) @@ -70,7 +71,7 @@ test_dt = 1e-2 appxsol_setup = Dict(:alg=>SRIW1(), :abstol=>1e-4, :reltol=>1e-4) wp = WorkPrecisionSet(prob, abstols, reltols, setups, test_dt; maxiters = 1e7, - verbose = false, save_everystep = false, + verbose = SciMLLogging.None(), save_everystep = false, parallel_type = :none, appxsol_setup = appxsol_setup, numruns_error = N, error_estimate = :weak_final) diff --git a/benchmarks/NonStiffSDE/Manifest.toml b/benchmarks/NonStiffSDE/Manifest.toml index e7f6d63f6..abad88ea9 100644 --- a/benchmarks/NonStiffSDE/Manifest.toml +++ b/benchmarks/NonStiffSDE/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.11" +julia_version = "1.11.9" manifest_format = "2.0" -project_hash = "dc9943b37d7ea5ab2a10bfad4b489771df415bcf" +project_hash = "c5315bfa2d58b96964af81c50850836e7f27461b" [[deps.ADTypes]] -git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" +git-tree-sha1 = "bbc22a9a08a0ef6460041086d8a7b27940ed4ffd" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.21.0" +version = "1.22.0" [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" @@ -56,9 +56,9 @@ version = "0.1.44" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "35ea197a51ce46fcd01c4a44befce0578a1aaeca" +git-tree-sha1 = "0761717147821d696c9470a7a86364b2fbd22fd8" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.5.0" +version = "4.5.2" weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] @@ -73,7 +73,7 @@ version = "1.1.3" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.ArnoldiMethod]] deps = ["LinearAlgebra", "Random", "StaticArrays"] @@ -83,9 +83,9 @@ version = "0.4.0" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "78b3a7a536b4b0a747a0f296ea77091ca0a9f9a3" +git-tree-sha1 = "54f895554d05c83e3dd59f6a396671dae8999573" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.23.0" +version = "7.24.0" [deps.ArrayInterface.extensions] ArrayInterfaceAMDGPUExt = "AMDGPU" @@ -129,6 +129,7 @@ weakdeps = ["SparseArrays"] [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +version = "1.11.0" [[deps.BandedMatrices]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] @@ -146,6 +147,7 @@ version = "1.11.0" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.Bijections]] git-tree-sha1 = "a2d308fcd4c2fb90e943cf9cd2fbfa9c32b69733" @@ -167,12 +169,6 @@ git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" version = "0.1.9" -[[deps.BitTwiddlingConvenienceFunctions]] -deps = ["Static"] -git-tree-sha1 = "f21cfd4950cb9f0587d5067e69405ad2acd27b87" -uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" -version = "0.1.6" - [[deps.BlockArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] git-tree-sha1 = "0f606a9894e2bcda541ceb82a91a13c5d450ed97" @@ -186,9 +182,9 @@ weakdeps = ["Adapt", "BandedMatrices"] [[deps.BracketingNonlinearSolve]] deps = ["CommonSolve", "ConcreteStructs", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "d9b66401c1fa982c7ca984d0566af5a9b3551420" +git-tree-sha1 = "7ad7171d693ae5552ac43862e7f6b61df4471c2b" uuid = "70df07ce-3d50-431d-a3e7-ca6ddb60ac1e" -version = "1.12.0" +version = "1.12.1" [deps.BracketingNonlinearSolve.extensions] BracketingNonlinearSolveChainRulesCoreExt = ["ChainRulesCore", "ForwardDiff"] @@ -204,24 +200,12 @@ git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" version = "1.0.9+0" -[[deps.CPUSummary]] -deps = ["CpuId", "IfElse", "PrecompileTools", "Preferences", "Static"] -git-tree-sha1 = "f3a21d7fc84ba618a779d1ed2fcca2e682865bab" -uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" -version = "0.2.7" - [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] git-tree-sha1 = "d0efe2c6fdcdaa1c161d206aa8b933788397ec71" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" version = "1.18.6+0" -[[deps.CloseOpenIntervals]] -deps = ["Static", "StaticArrayInterface"] -git-tree-sha1 = "05ba0d07cd4fd8b7a39541e31a7b0254704ea581" -uuid = "fb6a15b2-703c-40df-9091-08a04967cfa9" -version = "0.1.13" - [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" @@ -239,13 +223,11 @@ deps = ["FixedPointNumbers", "Random"] git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" version = "0.12.1" +weakdeps = ["StyledStrings"] [deps.ColorTypes.extensions] StyledStringsExt = "StyledStrings" - [deps.ColorTypes.weakdeps] - StyledStrings = "f489334b-da3d-4c2e-b8f0-e476e12c162b" - [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" @@ -345,12 +327,6 @@ git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" version = "0.6.3" -[[deps.CpuId]] -deps = ["Markdown"] -git-tree-sha1 = "fcbb72b032692610bfbdb15018ac16a36cf2e406" -uuid = "adafc99b-e345-5852-983c-f28acb93d879" -version = "0.3.1" - [[deps.DataAPI]] git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" @@ -370,6 +346,7 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" [[deps.Dbus_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] @@ -390,10 +367,10 @@ uuid = "85a47980-9c8c-11e8-2b9f-f7ca1fa99fb4" version = "0.4.6" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "803d463050fae6121f5d15fd449e9538cb993ad9" +deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "2d7ca58e6ce2d1f7a435773d73d111741e283070" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.214.1" +version = "7.1.0" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" @@ -434,9 +411,9 @@ version = "6.214.1" [[deps.DiffEqCallbacks]] deps = ["ConcreteStructs", "DataStructures", "DiffEqBase", "DifferentiationInterface", "LinearAlgebra", "Markdown", "PrecompileTools", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "6578347ab1743b1eed62a83b537bd276a5cc736b" +git-tree-sha1 = "51f445c25b80c26c83c61520cde214adf8c05227" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "4.13.0" +version = "4.17.0" [deps.DiffEqCallbacks.extensions] DiffEqCallbacksFunctorsExt = "Functors" @@ -445,16 +422,16 @@ version = "4.13.0" Functors = "d9f16b24-f501-4c13-a1f2-28368ffc5196" [[deps.DiffEqDevTools]] -deps = ["BracketingNonlinearSolve", "CommonSolve", "DiffEqBase", "DiffEqNoiseProcess", "Distributed", "ExplicitImports", "LinearAlgebra", "Logging", "RecipesBase", "RecursiveArrayTools", "RootedTrees", "SciMLBase", "Statistics", "StructArrays"] -git-tree-sha1 = "85b69022536add40c3ef422f6f2224cd59f65076" +deps = ["DiffEqBase", "DiffEqNoiseProcess", "Distributed", "LinearAlgebra", "Logging", "NLsolve", "RecipesBase", "RecursiveArrayTools", "RootedTrees", "SciMLBase", "Statistics", "StructArrays"] +git-tree-sha1 = "cc290a2fdad4d332ba6a88953eaf5800687ccd49" uuid = "f3b72e0c-5b89-59e1-b016-84e28bfd966d" -version = "2.51.0" +version = "3.0.0" [[deps.DiffEqNoiseProcess]] deps = ["CommonSolve", "DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "PoissonRandom", "QuadGK", "Random", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "feb625b2aa510b7f8aee69d3fc60c1eed53640cc" +git-tree-sha1 = "5b5fe6eb9e994ff0de4e84fe149b03c706fd6403" uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" -version = "5.28.0" +version = "5.31.0" [deps.DiffEqNoiseProcess.extensions] DiffEqNoiseProcessOptimExt = "Optim" @@ -478,9 +455,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +git-tree-sha1 = "d0250552e42bf7cc36479fd38a6e30004c9e8c2b" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.7.16" +version = "0.7.17" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -490,7 +467,7 @@ version = "0.7.16" DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] - DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGPUArraysCoreExt = ["GPUArraysCore", "Adapt"] DifferentiationInterfaceGTPSAExt = "GTPSA" DifferentiationInterfaceMooncakeExt = "Mooncake" DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] @@ -504,6 +481,7 @@ version = "0.7.16" DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] [deps.DifferentiationInterface.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" @@ -526,15 +504,30 @@ version = "0.7.16" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" +[[deps.Distances]] +deps = ["LinearAlgebra", "Statistics", "StatsAPI"] +git-tree-sha1 = "c7e3a542b999843086e2f29dac96a618c105be1d" +uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" +version = "0.10.12" + + [deps.Distances.extensions] + DistancesChainRulesCoreExt = "ChainRulesCore" + DistancesSparseArraysExt = "SparseArrays" + + [deps.Distances.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" +git-tree-sha1 = "e421c1938fafab0165b04dc1a9dbe2a26272952c" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.123" +version = "0.25.125" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -582,9 +575,9 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.7" [[deps.EnzymeCore]] -git-tree-sha1 = "24bbb6fc8fb87eb71c1f8d00184a60fc22c63903" +git-tree-sha1 = "c6ee69ee502060982d12dbaaf3d8fcb4e835a0d1" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.8.19" +version = "0.8.20" [deps.EnzymeCore.extensions] AdaptExt = "Adapt" @@ -608,15 +601,9 @@ version = "0.1.11" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "27af30de8b5445644e8ffe3bcb0d72049c089cf1" +git-tree-sha1 = "8f05e9a2e7c2e3eb524102bb2926c5743c07fbe1" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.7.3+0" - -[[deps.ExplicitImports]] -deps = ["Markdown", "Pkg", "PrecompileTools", "TOML", "Test"] -git-tree-sha1 = "a8b6c26bf0ea9f8c4bad71e109a5fa64f34be392" -uuid = "7d51a73a-1435-4ff3-83d9-f097790105c7" -version = "1.15.0" +version = "2.8.0+0" [[deps.ExprTools]] git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" @@ -636,21 +623,24 @@ version = "0.4.5" [[deps.FFMPEG_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libva_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "66381d7059b5f3f6162f28831854008040a4e905" +git-tree-sha1 = "cac41ca6b2d399adfc95e51240566f8a60a80806" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "8.0.1+1" +version = "8.1.0+0" [[deps.FastBroadcast]] deps = ["ArrayInterface", "LinearAlgebra"] -git-tree-sha1 = "e3e64918b1604ba8b1734c4a27febdfe5d09e235" +git-tree-sha1 = "7feeed2c9a7fa272189a5561bebf0c4ccaedb6ec" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "1.3.1" -weakdeps = ["Polyester", "Static"] +version = "1.3.2" [deps.FastBroadcast.extensions] FastBroadcastPolyesterExt = "Polyester" FastBroadcastStaticExt = "Static" + [deps.FastBroadcast.weakdeps] + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" + Static = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" + [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" @@ -681,6 +671,7 @@ version = "1.3.1" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" +version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] @@ -703,9 +694,9 @@ version = "1.8.0" [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "9340ca07ca27093ff68418b7558ca37b05f8aeb1" +git-tree-sha1 = "f7017a4f337f8df189fcce98e32b67a1298a2115" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.29.0" +version = "2.31.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -771,9 +762,9 @@ version = "1.1.3" [[deps.FunctionWrappersWrappers]] deps = ["FunctionWrappers", "PrecompileTools", "TruncatedStacktraces"] -git-tree-sha1 = "648dc754255ecee39da5a06bd2969bc5a4c360b4" +git-tree-sha1 = "c1b0c3a166a2a393257aa888787ca817532e14ce" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "1.2.0" +version = "1.8.0" [deps.FunctionWrappersWrappers.extensions] FunctionWrappersWrappersEnzymeExt = ["Enzyme", "EnzymeCore"] @@ -787,12 +778,13 @@ version = "1.2.0" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" +version = "1.11.0" [[deps.GLFW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] -git-tree-sha1 = "b7bfd56fa66616138dfe5237da4dc13bbd83c67f" +git-tree-sha1 = "9e0fb9e54594c47f278d75063980e43066e26e20" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.4.1+0" +version = "3.4.1+1" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -842,9 +834,9 @@ version = "3.7.0+0" [[deps.Git_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "dc34a3e3d96b4ed305b641e626dc14c12b7824b8" +git-tree-sha1 = "0dd4cfb426924210c8f42742751cbde74b27bfa3" uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb" -version = "2.53.0+0" +version = "2.54.0+0" [[deps.Glib_jll]] deps = ["Artifacts", "GettextRuntime_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] @@ -914,16 +906,11 @@ version = "1.34.4" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" Revise = "295af30f-e4ad-537b-8983-00126c2a3abe" -[[deps.IfElse]] -git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" -uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" -version = "0.1.1" - [[deps.ImplicitDiscreteSolve]] deps = ["ConcreteStructs", "DiffEqBase", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "OrdinaryDiffEqCore", "Reexport", "SciMLBase", "SymbolicIndexingInterface"] -git-tree-sha1 = "01eb732749884b8c481fc165c62c0b9652fd673a" +git-tree-sha1 = "dc9f649cbcdd4f2b402d7cbbd5cf61517b45ad5a" uuid = "3263718b-31ed-49cf-8a0f-35a466e8af96" -version = "1.9.0" +version = "2.0.0" [[deps.Indexing]] git-tree-sha1 = "ce1566720fd6b19ff3411404d4b977acd4814f9f" @@ -949,6 +936,7 @@ version = "2025.2.0+0" [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" +version = "1.11.0" [[deps.IntervalSets]] git-tree-sha1 = "79d6bd28c8d9bccc2229784f1bd637689b256377" @@ -1007,15 +995,15 @@ version = "0.2.1" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "b6893345fd6658c8e475d40155789f4860ac3b21" +git-tree-sha1 = "c0c9b76f3520863909825cbecdef58cd63de705a" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.1.4+0" +version = "3.1.5+0" [[deps.JumpProcesses]] deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "PoissonRandom", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "SymbolicIndexingInterface"] -git-tree-sha1 = "7f745242b714313ec435438a8a38492037efa30e" +git-tree-sha1 = "2a8e5b9b90ef0da05f61904d0a39a7b1c0a83310" uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" -version = "9.25.0" +version = "9.28.0" [deps.JumpProcesses.extensions] JumpProcessesKernelAbstractionsExt = ["Adapt", "KernelAbstractions"] @@ -1040,9 +1028,9 @@ version = "3.100.3+0" [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "aaafe88dccbd957a8d82f7d05be9b69172e0cee3" +git-tree-sha1 = "17b94ecafcfa45e8360a4fc9ca6b583b049e4e37" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "4.0.1+0" +version = "4.1.0+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1073,15 +1061,10 @@ version = "0.16.10" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" tectonic_jll = "d7dd28d6-a5e6-559c-9131-7eb760cdacc5" -[[deps.LayoutPointers]] -deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "a9eaadb366f5493a5654e843864c13d8b107548c" -uuid = "10f19ff3-798f-405d-979b-55457f8fc047" -version = "0.1.17" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" +version = "1.11.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] @@ -1091,16 +1074,17 @@ version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.4.0+0" +version = "8.6.0+0" [[deps.LibGit2]] deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +version = "1.11.0" [[deps.LibGit2_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.6.4+0" +version = "1.7.2+0" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] @@ -1109,6 +1093,7 @@ version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" +version = "1.11.0" [[deps.Libffi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1130,9 +1115,9 @@ version = "1.18.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "97bbca976196f2a1eb9607131cb108c69ec3f8a6" +git-tree-sha1 = "cc3ad4faf30015a3e8094c9b5b7f19e85bdf2386" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] @@ -1142,31 +1127,36 @@ version = "4.7.2+0" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d0205286d9eceadc518742860bf23f703779a3d6" +git-tree-sha1 = "d620582b1f0cbe2c72dd1d5bd195a9ce73370ab1" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.LineSearch]] deps = ["ADTypes", "CommonSolve", "ConcreteStructs", "FastClosures", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "SciMLBase", "SciMLJacobianOperators", "StaticArraysCore"] -git-tree-sha1 = "9f7253c0574b4b585c8909232adb890930da980a" +git-tree-sha1 = "fd58a77c92e7c8f1db25c9839127d52943a49349" uuid = "87fe0de2-c867-4266-b59a-2f0a94fc965b" -version = "0.1.6" +version = "0.1.9" +weakdeps = ["LineSearches"] [deps.LineSearch.extensions] LineSearchLineSearchesExt = "LineSearches" - [deps.LineSearch.weakdeps] - LineSearches = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" +[[deps.LineSearches]] +deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Printf"] +git-tree-sha1 = "9ea3422d03222c6de679934d1c08f0a99405aa03" +uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" +version = "7.5.1" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +version = "1.11.0" [[deps.LinearSolve]] deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "35b6d3b3cfa50f97a7e13bfdd3b82d9f9fcb68af" +git-tree-sha1 = "42b5cb44317e89ef75dd841c9c8eba9045bf9ff0" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "3.72.0" +version = "3.75.0" [deps.LinearSolve.extensions] LinearSolveAMDGPUExt = "AMDGPU" @@ -1191,7 +1181,9 @@ version = "3.72.0" LinearSolveKrylovKitExt = "KrylovKit" LinearSolveMetalExt = "Metal" LinearSolveMooncakeExt = "Mooncake" + LinearSolvePETScCSRExt = ["PETSc", "SparseArrays", "SparseMatricesCSR"] LinearSolvePETScExt = ["PETSc", "SparseArrays"] + LinearSolvePETScMPIExt = ["PETSc", "PartitionedArrays", "SparseArrays", "SparseMatricesCSR"] LinearSolveParUExt = ["ParU_jll", "SparseArrays"] LinearSolvePardisoExt = ["Pardiso", "SparseArrays"] LinearSolveRecursiveFactorizationExt = "RecursiveFactorization" @@ -1224,8 +1216,10 @@ version = "3.72.0" PETSc = "ace2c81b-2b5f-4b1e-a30d-d662738edfe0" ParU_jll = "9e0b026c-e8ce-559c-a2c4-6a3d5c955bc9" Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" + PartitionedArrays = "5a9dfac6-5c52-46f7-8278-5e2210713be9" RecursiveFactorization = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseMatricesCSR = "a0a7dd2c-ebf4-11e9-1f05-cf50bc540ca1" Sparspak = "e56a9233-b9d6-4f03-8d0f-1825330902ac" blis_jll = "6136c539-28a5-5bf0-87cc-b183200dce32" @@ -1247,6 +1241,7 @@ version = "0.3.29" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" +version = "1.11.0" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] @@ -1265,14 +1260,10 @@ git-tree-sha1 = "1e0228a030642014fe5cfe68c2c0a818f9e3f522" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" version = "0.5.16" -[[deps.ManualMemory]] -git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" -uuid = "d125e4d3-2237-4719-b19c-fa641b8a4667" -version = "0.1.8" - [[deps.Markdown]] deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +version = "1.11.0" [[deps.MaybeInplace]] deps = ["ArrayInterface", "LinearAlgebra", "MacroTools"] @@ -1293,7 +1284,7 @@ version = "1.1.10" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.1010+0" +version = "2.28.6+0" [[deps.Measures]] git-tree-sha1 = "b513cedd20d9c914783d8ad83d08120702bf2c77" @@ -1308,12 +1299,13 @@ version = "1.2.0" [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" +version = "1.11.0" [[deps.ModelingToolkit]] -deps = ["ADTypes", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "ConstructionBase", "DataStructures", "DiffEqBase", "DifferentiationInterface", "DocStringExtensions", "FillArrays", "FindFirstFunctions", "ForwardDiff", "Graphs", "InteractiveUtils", "Libdl", "LinearAlgebra", "ModelingToolkitBase", "ModelingToolkitTearing", "Moshi", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "StateSelection", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] -git-tree-sha1 = "a395115299f96212461f045e7619d04c2c9986a2" +deps = ["ADTypes", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "ConstructionBase", "DataStructures", "DiffEqBase", "DifferentiationInterface", "DocStringExtensions", "FillArrays", "ForwardDiff", "Graphs", "InteractiveUtils", "Libdl", "LinearAlgebra", "ModelingToolkitBase", "ModelingToolkitTearing", "Moshi", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "StateSelection", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] +git-tree-sha1 = "8527fee82ed8dc6934827b447b0555674c3ba1be" uuid = "961ee093-0014-501f-94e3-6117800e7a78" -version = "11.19.1" +version = "11.24.1" [deps.ModelingToolkit.extensions] MTKFMIExt = "FMIImport" @@ -1328,10 +1320,10 @@ version = "11.19.1" OrdinaryDiffEqRosenbrock = "43230ef6-c299-4910-a778-202eb28ce4ce" [[deps.ModelingToolkitBase]] -deps = ["ADTypes", "AbstractTrees", "ArrayInterface", "BandedMatrices", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffRules", "DifferentiationInterface", "DocStringExtensions", "DomainSets", "EnumX", "EnzymeCore", "ExprTools", "FillArrays", "FindFirstFunctions", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "ImplicitDiscreteSolve", "InteractiveUtils", "JumpProcesses", "Libdl", "LinearAlgebra", "Moshi", "NaNMath", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Random", "ReadOnlyDicts", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] -git-tree-sha1 = "96449ee10954eaddb9cd47a0262d1c67e88ee853" +deps = ["ADTypes", "AbstractTrees", "ArrayInterface", "BandedMatrices", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffRules", "DifferentiationInterface", "DocStringExtensions", "DomainSets", "EnumX", "EnzymeCore", "ExprTools", "FillArrays", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "ImplicitDiscreteSolve", "InteractiveUtils", "JumpProcesses", "Libdl", "LinearAlgebra", "Moshi", "NaNMath", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Random", "ReadOnlyDicts", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] +git-tree-sha1 = "d52da5508ed6c42b4e7c01356287d7114f3e13db" uuid = "7771a370-6774-4173-bd38-47e70ca0b839" -version = "1.28.0" +version = "1.33.1" [deps.ModelingToolkitBase.extensions] MTKBifurcationKitExt = "BifurcationKit" @@ -1361,9 +1353,9 @@ version = "1.28.0" [[deps.ModelingToolkitTearing]] deps = ["BipartiteGraphs", "CommonSolve", "DocStringExtensions", "Graphs", "LinearAlgebra", "ModelingToolkitBase", "Moshi", "OffsetArrays", "OrderedCollections", "SciMLBase", "Setfield", "SparseArrays", "StateSelection", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UUIDs"] -git-tree-sha1 = "caa0f038c2ac3b4ece4dc713656199402e75bd50" +git-tree-sha1 = "3ad8028ba31ef212307586416f1b341b5e8d4eb9" uuid = "6bb917b9-1269-42b9-9f7c-b0dca72083ab" -version = "1.12.1" +version = "1.13.3" [[deps.Moshi]] deps = ["ExproniconLite", "Jieko"] @@ -1373,7 +1365,7 @@ version = "0.3.7" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2025.12.2" +version = "2023.12.12" [[deps.MuladdMacro]] git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" @@ -1382,9 +1374,9 @@ version = "0.2.4" [[deps.MultivariatePolynomials]] deps = ["DataStructures", "LinearAlgebra", "MutableArithmetics", "StarAlgebras"] -git-tree-sha1 = "b45f1ed8448ea20885cb4c5029c2a462fe2682bf" +git-tree-sha1 = "4838893d9b035c2f6967c0d533350e1755b58a70" uuid = "102ac46a-7ee4-5c85-9060-abc95bfdeaa3" -version = "0.5.17" +version = "0.5.19" [deps.MultivariatePolynomials.extensions] MultivariatePolynomialsChainRulesCoreExt = "ChainRulesCore" @@ -1404,6 +1396,18 @@ git-tree-sha1 = "7c25249fc13a070f5ba433c50e21e22bb33c6fb0" uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" version = "1.7.1" +[[deps.NLSolversBase]] +deps = ["ADTypes", "DifferentiationInterface", "Distributed", "FiniteDiff", "ForwardDiff"] +git-tree-sha1 = "25a6638571a902ecfb1ae2a18fc1575f86b1d4df" +uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" +version = "7.10.0" + +[[deps.NLsolve]] +deps = ["Distances", "LineSearches", "LinearAlgebra", "NLSolversBase", "Printf", "Reexport"] +git-tree-sha1 = "019f12e9a1a7880459d0173c182e6a99365d7ac1" +uuid = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" +version = "4.5.1" + [[deps.NaNMath]] deps = ["OpenLibm_jll"] git-tree-sha1 = "9b8215b1ee9e78a293f99797cd31375471b2bcae" @@ -1416,9 +1420,9 @@ version = "1.2.0" [[deps.NonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SciMLLogging", "Setfield", "SimpleNonlinearSolve", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "373b688150f160b68083733657246532389e4280" +git-tree-sha1 = "ae0b0f875e4dfda538ab6977ec7939126ee9a1fe" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "4.17.0" +version = "4.19.0" [deps.NonlinearSolve.extensions] NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" @@ -1449,9 +1453,9 @@ version = "4.17.0" [[deps.NonlinearSolveBase]] deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "LogExpFunctions", "Markdown", "MaybeInplace", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "f58613b44ce12a3a74be0bc4a865cc1f2e776737" +git-tree-sha1 = "a19a5df29ef2b197499fc631fa1a59385ae15262" uuid = "be0214bd-f91f-a760-ac4e-3421ce2b2da0" -version = "2.22.0" +version = "2.25.0" [deps.NonlinearSolveBase.extensions] NonlinearSolveBaseBandedMatricesExt = "BandedMatrices" @@ -1481,15 +1485,15 @@ version = "2.22.0" [[deps.NonlinearSolveFirstOrder]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConcreteStructs", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLJacobianOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "ae36a13005343aed5e731f146637f61a54702444" +git-tree-sha1 = "ce68820a4f421fb5bee7ec4dcf875aff33886bfb" uuid = "5959db7a-ea39-4486-b5fe-2dd0bf03d60d" -version = "2.1.0" +version = "2.1.1" [[deps.NonlinearSolveQuasiNewton]] deps = ["ArrayInterface", "CommonSolve", "ConcreteStructs", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLOperators", "StaticArraysCore"] -git-tree-sha1 = "2ada8e9892fd60b3f01a4984704d66fca682bd50" +git-tree-sha1 = "538432ca1aea8bf63db02929bf870501f8a7c64c" uuid = "9a2c21bd-3a47-402d-9113-8faf9a0ee114" -version = "1.13.0" +version = "1.13.1" weakdeps = ["ForwardDiff"] [deps.NonlinearSolveQuasiNewton.extensions] @@ -1497,9 +1501,9 @@ weakdeps = ["ForwardDiff"] [[deps.NonlinearSolveSpectralMethods]] deps = ["CommonSolve", "ConcreteStructs", "LineSearch", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "e3e8be34968ad07be8734c3d6e42b3f14218b694" +git-tree-sha1 = "a3781e12becdf0ce5520bd97ec617e879bf4e9f2" uuid = "26075421-4e9a-44e1-8bd1-420ed7ad02b2" -version = "1.7.0" +version = "1.7.1" weakdeps = ["ForwardDiff"] [deps.NonlinearSolveSpectralMethods.extensions] @@ -1523,7 +1527,7 @@ version = "1.3.6+0" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.23+5" +version = "0.3.27+1" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] @@ -1566,10 +1570,10 @@ uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.8.1" [[deps.OrdinaryDiffEqCore]] -deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ConcreteStructs", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "Polyester", "PrecompileTools", "Preferences", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Static", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "b901cac9dae908a96256f5870a2b8ef16e969ea9" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ConcreteStructs", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "PrecompileTools", "Preferences", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "86c210d134f09139a294f0329006d6cc20275650" uuid = "bbf590c4-e513-4bbe-9b18-05decba2e5d8" -version = "3.29.0" +version = "4.0.0" [deps.OrdinaryDiffEqCore.extensions] OrdinaryDiffEqCoreMooncakeExt = "Mooncake" @@ -1580,20 +1584,20 @@ version = "3.29.0" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[deps.OrdinaryDiffEqDifferentiation]] -deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "LinearAlgebra", "LinearSolve", "OrdinaryDiffEqCore", "SciMLBase", "SciMLOperators", "SparseMatrixColorings", "StaticArrays"] -git-tree-sha1 = "8b18ce8ab49cd04a1443fd63eb569d270a07090c" +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "LinearAlgebra", "LinearSolve", "OrdinaryDiffEqCore", "SciMLBase", "SciMLOperators", "SparseMatrixColorings", "StaticArraysCore"] +git-tree-sha1 = "faf3fe4824557bc72aa126a845586f71d377a70a" uuid = "4302a76b-040a-498a-8c04-15b101fed76b" -version = "2.7.0" +version = "3.0.0" weakdeps = ["SparseArrays"] [deps.OrdinaryDiffEqDifferentiation.extensions] OrdinaryDiffEqDifferentiationSparseArraysExt = "SparseArrays" [[deps.OrdinaryDiffEqNonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "DiffEqBase", "FastBroadcast", "FastClosures", "ForwardDiff", "LinearAlgebra", "LinearSolve", "MuladdMacro", "NonlinearSolve", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "PreallocationTools", "RecursiveArrayTools", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleNonlinearSolve", "SparseArrays", "StaticArrays"] -git-tree-sha1 = "7eabb9877144d3cfc894fee899a76439ee2070de" +deps = ["ADTypes", "ArrayInterface", "DiffEqBase", "FastBroadcast", "FastClosures", "ForwardDiff", "LinearAlgebra", "LinearSolve", "MuladdMacro", "NonlinearSolve", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "PreallocationTools", "RecursiveArrayTools", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleNonlinearSolve", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "c3e92bdb7bf16385e6f7b505f78601a2708eff28" uuid = "127b3ac7-2247-4354-8eb6-78cf4e7c58e8" -version = "1.26.0" +version = "2.0.0" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -1612,21 +1616,21 @@ weakdeps = ["StatsBase"] [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "0662b083e11420952f2e62e17eddae7fc07d5997" +git-tree-sha1 = "58e5ed5e386e156bd93e86b305ebd21ac63d2d04" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" -version = "1.57.0+0" +version = "1.57.1+0" [[deps.ParameterizedFunctions]] deps = ["DataStructures", "DiffEqBase", "DocStringExtensions", "Latexify", "LinearAlgebra", "ModelingToolkit", "ModelingToolkitBase", "Reexport", "SciMLBase", "SymbolicUtils", "Symbolics"] -git-tree-sha1 = "a09136faf71469ce2545949c8466ab46f3878cb7" +git-tree-sha1 = "42fd879e2e662070397bd067a94ce9c98f8353f0" uuid = "65888b18-ceab-5e60-b2b9-181511a3b968" -version = "5.22.0" +version = "5.24.0" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "7d2f8f21da5db6a806faf7b9b292296da42b2810" +git-tree-sha1 = "5d5e0a78e971354b1c7bff0655d11fdc1b0e12c8" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.3" +version = "2.8.4" [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] @@ -1635,9 +1639,13 @@ uuid = "30392449-352a-5448-841d-b1acce4e97dc" version = "0.44.2+0" [[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.10.0" +version = "1.11.0" +weakdeps = ["REPL"] + + [deps.Pkg.extensions] + REPLExt = "REPL" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1677,18 +1685,6 @@ git-tree-sha1 = "67afbcbe9e184d6729a92a022147ed4cf972ca7b" uuid = "e409e4f3-bfea-5376-8464-e040bb5c01ab" version = "0.4.7" -[[deps.Polyester]] -deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "16bbc30b5ebea91e9ce1671adc03de2832cff552" -uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.19" - -[[deps.PolyesterWeave]] -deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] -git-tree-sha1 = "645bed98cd47f72f67316fd42fc47dee771aefcd" -uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad" -version = "0.2.2" - [[deps.PreallocationTools]] deps = ["Adapt", "ArrayInterface", "PrecompileTools"] git-tree-sha1 = "e16b73bf892c55d16d53c9c0dbd0fb31cb7e25da" @@ -1726,6 +1722,7 @@ version = "0.5.7" [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" +version = "1.11.0" [[deps.PtrArrays]] git-tree-sha1 = "4fbbafbc6251b883f4d2705356f3641f3652a7fe" @@ -1775,12 +1772,14 @@ version = "2.11.3" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" [[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" +version = "1.11.0" [[deps.Random]] deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +version = "1.11.0" [[deps.ReadOnlyArrays]] git-tree-sha1 = "e6f7ddf48cf141cb312b078ca21cb2d29d0dc11d" @@ -1807,17 +1806,19 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "LinearAlgebra", "PrecompileTools", "RecipesBase", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "d0282d612f22dcad7b81cf487b746e63aa2a6709" +git-tree-sha1 = "57b6fb3932fc8d1fc911f840d2c9de5fe3ba5008" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.54.0" +version = "4.3.0" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsCUDAExt = "CUDA" RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" RecursiveArrayToolsFastBroadcastPolyesterExt = ["FastBroadcast", "Polyester"] RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsKernelAbstractionsExt = "KernelAbstractions" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsMooncakeExt = "Mooncake" RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] RecursiveArrayToolsStatisticsExt = "Statistics" @@ -1827,11 +1828,13 @@ version = "3.54.0" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" @@ -1894,9 +1897,9 @@ version = "0.5.18" [[deps.SCCNonlinearSolve]] deps = ["CommonSolve", "PrecompileTools", "Reexport", "SciMLBase", "SymbolicIndexingInterface"] -git-tree-sha1 = "922db5c9c2ac78c68ce62edffefc61a3add303a7" +git-tree-sha1 = "521a298294a6fd11068df0148b4d57bb31550453" uuid = "9dfe8606-65a1-4bb3-9748-cb89d1561431" -version = "1.12.0" +version = "1.13.0" [deps.SCCNonlinearSolve.extensions] SCCNonlinearSolveChainRulesCoreExt = "ChainRulesCore" @@ -1906,24 +1909,19 @@ version = "1.12.0" [[deps.SDEProblemLibrary]] deps = ["DiffEqBase", "Markdown", "RuntimeGeneratedFunctions", "SciMLBase"] -git-tree-sha1 = "6e69a42c237c381293cda9917deee408a9aa8fbd" +git-tree-sha1 = "46fd1c828bdc19ec6ee7c10a6362d01bacb4111d" uuid = "c72e72a9-a271-4b2b-8966-303ed956772e" -version = "1.1.1" +version = "1.2.0" [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" -[[deps.SIMDTypes]] -git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" -uuid = "94e857df-77ce-4151-89e5-788b33177be4" -version = "0.1.0" - [[deps.SciMLBase]] -deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Moshi", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "908c0bf271604d09393a21c142116ab26f66f67c" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "Random", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] +git-tree-sha1 = "450a8405f96d0a7c6caabed0852def06ba8c6bf1" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.154.0" +version = "3.7.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1931,7 +1929,6 @@ version = "2.154.0" SciMLBaseDistributionsExt = "Distributions" SciMLBaseEnzymeExt = "Enzyme" SciMLBaseForwardDiffExt = "ForwardDiff" - SciMLBaseMLStyleExt = "MLStyle" SciMLBaseMakieExt = "Makie" SciMLBaseMeasurementsExt = "Measurements" SciMLBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" @@ -1951,7 +1948,6 @@ version = "2.154.0" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - MLStyle = "d8e11817-5142-5d16-987a-aa16d5891078" Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" @@ -1972,9 +1968,9 @@ version = "0.1.3" [[deps.SciMLJacobianOperators]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DifferentiationInterface", "FastClosures", "LinearAlgebra", "SciMLBase", "SciMLOperators"] -git-tree-sha1 = "e96d5e96debf7f80a50d0b976a13dea556ccfd3a" +git-tree-sha1 = "7156a5b51cba1bea33a82a036939ead4131f92bc" uuid = "19f34311-ddf3-4b8b-af20-060888a46c0e" -version = "0.1.12" +version = "0.1.13" [[deps.SciMLLogging]] deps = ["Logging", "LoggingExtras", "Preferences"] @@ -1990,9 +1986,9 @@ version = "1.9.1" [[deps.SciMLOperators]] deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra"] -git-tree-sha1 = "234869cf9fee9258a95464b7a7065cc7be84db00" +git-tree-sha1 = "0e34162268883db01c04f988895a80d0659071bb" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "1.16.0" +version = "1.17.0" weakdeps = ["SparseArrays", "StaticArraysCore"] [deps.SciMLOperators.extensions] @@ -2018,6 +2014,7 @@ version = "1.3.0" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" +version = "1.11.0" [[deps.Setfield]] deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] @@ -2038,9 +2035,9 @@ version = "1.2.0" [[deps.SimpleNonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "744c3f0fb186ad28376199c1e72ca39d0c614b5d" +git-tree-sha1 = "d688de789b7e643326caf9a1051376dadbcd8873" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "2.11.0" +version = "2.11.1" [deps.SimpleNonlinearSolve.extensions] SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" @@ -2060,6 +2057,7 @@ version = "0.9.5" [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" +version = "1.11.0" [[deps.SortingAlgorithms]] deps = ["DataStructures"] @@ -2070,26 +2068,29 @@ version = "1.2.2" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -version = "1.10.0" +version = "1.11.0" [[deps.SparseMatrixColorings]] deps = ["ADTypes", "DocStringExtensions", "LinearAlgebra", "PrecompileTools", "Random", "SparseArrays"] -git-tree-sha1 = "1c1be8c6fdfaf9b6c9e156c509e672953b8e6af7" +git-tree-sha1 = "f63d76c7b7c329cf11badd564fd8ba877b09c3fe" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.4.26" +version = "0.4.27" [deps.SparseMatrixColorings.extensions] - SparseMatrixColoringsCUDAExt = "CUDA" + SparseMatrixColoringsCUDAExt = ["CUDA", "cuSPARSE"] SparseMatrixColoringsCliqueTreesExt = "CliqueTrees" SparseMatrixColoringsColorsExt = "Colors" + SparseMatrixColoringsGPUArraysExt = "GPUArrays" SparseMatrixColoringsJuMPExt = ["JuMP", "MathOptInterface"] [deps.SparseMatrixColorings.weakdeps] CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" + GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" JuMP = "4076af6c-e467-56ae-b986-b466b2749572" MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" + cuSPARSE = "b26da814-b3bc-49ef-b0ee-c816305aa060" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -2117,9 +2118,9 @@ version = "0.3.0" [[deps.StateSelection]] deps = ["BipartiteGraphs", "DocStringExtensions", "FindFirstFunctions", "Graphs", "LinearAlgebra", "OrderedCollections", "Setfield", "SparseArrays"] -git-tree-sha1 = "a09c34b564f56f689f42f50e97c3a8dae35344ad" +git-tree-sha1 = "824641f6d414f0885200e034e3853c3c2f61ac43" uuid = "64909d44-ed92-46a8-bbd9-f047dfbdc84b" -version = "1.9.1" +version = "1.9.2" [deps.StateSelection.extensions] StateSelectionDeepDiffsExt = "DeepDiffs" @@ -2127,23 +2128,6 @@ version = "1.9.1" [deps.StateSelection.weakdeps] DeepDiffs = "ab62b9b5-e342-54a8-a765-a90f495de1a6" -[[deps.Static]] -deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools", "SciMLPublic"] -git-tree-sha1 = "49440414711eddc7227724ae6e570c7d5559a086" -uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.3.1" - -[[deps.StaticArrayInterface]] -deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "SciMLPublic", "Static"] -git-tree-sha1 = "aa1ea41b3d45ac449d10477f65e2b40e3197a0d2" -uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.9.0" -weakdeps = ["OffsetArrays", "StaticArrays"] - - [deps.StaticArrayInterface.extensions] - StaticArrayInterfaceOffsetArraysExt = "OffsetArrays" - StaticArrayInterfaceStaticArraysExt = "StaticArrays" - [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] git-tree-sha1 = "246a8bb2e6667f832eea063c3a56aef96429a3db" @@ -2164,9 +2148,14 @@ uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" version = "1.4.4" [[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] +deps = ["LinearAlgebra"] +git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.10.0" +version = "1.11.1" +weakdeps = ["SparseArrays"] + + [deps.Statistics.extensions] + SparseArraysExt = ["SparseArrays"] [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -2195,82 +2184,76 @@ version = "1.5.2" InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" [[deps.StochasticDiffEq]] -deps = ["DiffEqBase", "DiffEqNoiseProcess", "LinearAlgebra", "OrdinaryDiffEqCore", "OrdinaryDiffEqNonlinearSolve", "Reexport", "SciMLBase", "StochasticDiffEqCore", "StochasticDiffEqHighOrder", "StochasticDiffEqIIF", "StochasticDiffEqImplicit", "StochasticDiffEqLeaping", "StochasticDiffEqLevyArea", "StochasticDiffEqLowOrder", "StochasticDiffEqMilstein", "StochasticDiffEqROCK", "StochasticDiffEqRODE", "StochasticDiffEqWeak"] -git-tree-sha1 = "65e432f49eae999e39d4f137e6a7527eb70ff2c5" +deps = ["ADTypes", "DiffEqBase", "DiffEqNoiseProcess", "LinearAlgebra", "OrdinaryDiffEqCore", "OrdinaryDiffEqNonlinearSolve", "Reexport", "SciMLBase", "StochasticDiffEqCore", "StochasticDiffEqHighOrder", "StochasticDiffEqIIF", "StochasticDiffEqImplicit", "StochasticDiffEqLeaping", "StochasticDiffEqLevyArea", "StochasticDiffEqLowOrder", "StochasticDiffEqMilstein", "StochasticDiffEqROCK", "StochasticDiffEqRODE", "StochasticDiffEqWeak"] +git-tree-sha1 = "3472f4edc1571de470f1811b999f9a962d88e08b" uuid = "789caeaf-c7a9-5a7d-9973-96adeb23e2a0" -version = "6.101.0" +version = "7.0.0" [[deps.StochasticDiffEqCore]] deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqNoiseProcess", "FastPower", "FiniteDiff", "ForwardDiff", "JumpProcesses", "LinearAlgebra", "Logging", "MuladdMacro", "OrdinaryDiffEqCore", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SimpleNonlinearSolve", "SparseArrays", "StaticArrays", "StochasticDiffEqLevyArea"] -git-tree-sha1 = "9bc7b74e950dfdc8dac95280b7d8fd49aa8fb7bc" +git-tree-sha1 = "377aa541fea0de2a10067d906305f45f9c78a8de" uuid = "19c5a474-6cd1-4a5f-be79-46dc34e54d7f" -version = "1.1.0" +version = "2.0.0" [[deps.StochasticDiffEqHighOrder]] deps = ["DiffEqBase", "DiffEqNoiseProcess", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "StochasticDiffEqCore"] -git-tree-sha1 = "9f4231321117408aa9b7884d5379b646f8d07754" +git-tree-sha1 = "d08d2821c81ae60676345a038e364d2f9319dce6" uuid = "0520c28c-50fd-4d16-9c96-902fc80b3bab" -version = "1.0.0" +version = "2.0.0" [[deps.StochasticDiffEqIIF]] deps = ["DiffEqBase", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase", "StochasticDiffEqCore"] -git-tree-sha1 = "8d82ed0b5114eac176ce29237b5b12c399517ff8" +git-tree-sha1 = "a559afce60991f14447a2af76b0db067474d3e8e" uuid = "ebf54054-c36b-4494-9aba-657e36df524f" -version = "1.0.0" +version = "2.0.0" [[deps.StochasticDiffEqImplicit]] deps = ["ADTypes", "DiffEqBase", "DiffEqNoiseProcess", "FiniteDiff", "ForwardDiff", "JumpProcesses", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "StochasticDiffEqCore"] -git-tree-sha1 = "a63c04c61da6fb85343f6b2e9121525519f94353" +git-tree-sha1 = "8f12780b317807d2339f241287c39cd2844af331" uuid = "5080b986-4c76-4669-b5dc-373a41579d5b" -version = "1.2.0" +version = "2.0.0" [[deps.StochasticDiffEqLeaping]] deps = ["ADTypes", "DiffEqBase", "FiniteDiff", "ForwardDiff", "JumpProcesses", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqNonlinearSolve", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "StochasticDiffEqCore"] -git-tree-sha1 = "30d557d0cd853356b7a3926cc069f82fe97f2af0" +git-tree-sha1 = "a1335b23ca9015fd9a3344b34959591c312754cf" uuid = "aefaaa88-39f2-4e89-b162-d61b7e8cc81b" -version = "1.0.0" +version = "2.0.0" [[deps.StochasticDiffEqLevyArea]] deps = ["LinearAlgebra", "Random", "SpecialFunctions"] -git-tree-sha1 = "ac6b47de2be99255ba42e2b30a86a927ac53b1c7" +git-tree-sha1 = "083805654fde34d3d32d4dd91bcc20f4c0330db3" uuid = "90dbc90e-856a-4131-af2c-e8c5aa0f35b5" -version = "1.0.0" +version = "2.0.0" [[deps.StochasticDiffEqLowOrder]] deps = ["DiffEqBase", "DiffEqNoiseProcess", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "StochasticDiffEqCore"] -git-tree-sha1 = "a32b3996548663ab20c6e0d0fbcef332bf42400e" +git-tree-sha1 = "8ddc071c08eeb91e82e981e778a7dd2427037107" uuid = "d15fe365-ce7f-450a-828a-7985bd5b681b" -version = "1.0.0" +version = "2.0.0" [[deps.StochasticDiffEqMilstein]] deps = ["DiffEqBase", "DiffEqNoiseProcess", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "StochasticDiffEqCore", "StochasticDiffEqLevyArea"] -git-tree-sha1 = "617f407dbef5bde9932ed2ebba4bf253f089d75f" +git-tree-sha1 = "2f348e2cc3daba9b4ab610566b92e1dd2a80ba73" uuid = "8c95a807-c8e7-4581-8419-890d001af53e" -version = "1.1.0" +version = "2.0.0" [[deps.StochasticDiffEqROCK]] deps = ["DiffEqBase", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "StochasticDiffEqCore"] -git-tree-sha1 = "7b5f6d575cfc518a5b324e33609ebcc3d679cc6d" +git-tree-sha1 = "c0311e9e23fd089409e1cae7e7ab688dab3880dd" uuid = "db241ea8-0e6b-4abc-8f2d-1adff2294fd9" -version = "1.0.0" +version = "2.0.0" [[deps.StochasticDiffEqRODE]] deps = ["DiffEqBase", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "StochasticDiffEqCore"] -git-tree-sha1 = "51ba8a4d199a8e386c578d974a2e453c7f7b18a7" +git-tree-sha1 = "004b812a961588feefdc787958611e690901a382" uuid = "49714585-0aa1-4f53-b1e6-a9b8c0d5e03f" -version = "1.0.0" +version = "2.0.0" [[deps.StochasticDiffEqWeak]] deps = ["ADTypes", "DiffEqBase", "DiffEqNoiseProcess", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqNonlinearSolve", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "StochasticDiffEqCore"] -git-tree-sha1 = "60d6d7c180aeae58f254d0c5d3377bc4f6bb959d" +git-tree-sha1 = "c25f46aec1d61e46b63f807a959c635c8e50ac7a" uuid = "af2a2fcd-1c36-4cbe-a6d0-5afda784a085" -version = "1.1.0" - -[[deps.StrideArraysCore]] -deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "83151ba8065a73f53ca2ae98bc7274d817aa30f2" -uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.5.8" +version = "2.0.0" [[deps.StringEncodings]] deps = ["Libiconv_jll"] @@ -2299,6 +2282,10 @@ version = "0.7.3" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" + [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" @@ -2306,7 +2293,7 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "7.2.1+1" +version = "7.7.0+0" [[deps.SymbolicIndexingInterface]] deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] @@ -2328,9 +2315,9 @@ version = "1.1.0" [[deps.SymbolicUtils]] deps = ["AbstractTrees", "ArrayInterface", "Combinatorics", "ConstructionBase", "DataStructures", "Dictionaries", "DocStringExtensions", "DynamicPolynomials", "EnumX", "ExproniconLite", "Graphs", "LinearAlgebra", "MacroTools", "Moshi", "MultivariatePolynomials", "MutableArithmetics", "NaNMath", "PrecompileTools", "ReadOnlyArrays", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "TaskLocalValues", "TermInterface", "WeakCacheSets"] -git-tree-sha1 = "1f349efacf48e218cd6bd5273c1e82f7728df215" +git-tree-sha1 = "ae8741c34009171ee8e46d5c209cf0a15c469928" uuid = "d1185830-fcd6-423d-90d6-eec64667417b" -version = "4.23.1" +version = "4.26.0" [deps.SymbolicUtils.extensions] SymbolicUtilsChainRulesCoreExt = "ChainRulesCore" @@ -2346,9 +2333,9 @@ version = "4.23.1" [[deps.Symbolics]] deps = ["ADTypes", "AbstractPlutoDingetjes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "Moshi", "MultivariatePolynomials", "MutableArithmetics", "NaNMath", "PrecompileTools", "Preferences", "Primes", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLPublic", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] -git-tree-sha1 = "d319f764960a00a6922168e10a12db90880afb27" +git-tree-sha1 = "85bb4be51a7e90e531b1faa926b9497f436ca535" uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7" -version = "7.18.0" +version = "7.21.0" [deps.Symbolics.extensions] SymbolicsD3TreesExt = "D3Trees" @@ -2418,12 +2405,7 @@ version = "2.0.0" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.ThreadingUtilities]] -deps = ["ManualMemory"] -git-tree-sha1 = "d969183d3d244b6c33796b5ed01ab97328f2db85" -uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" -version = "0.5.5" +version = "1.11.0" [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] @@ -2456,6 +2438,7 @@ version = "1.6.1" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +version = "1.11.0" [[deps.UnPack]] git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" @@ -2464,6 +2447,7 @@ version = "1.0.2" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +version = "1.11.0" [[deps.UnicodeFun]] deps = ["REPL"] @@ -2584,9 +2568,9 @@ version = "0.9.12+0" [[deps.Xorg_libpciaccess_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "4909eb8f1cbf6bd4b1c30dd18b2ead9019ef2fad" +git-tree-sha1 = "58972370b81423fc546c56a60ed1a009450177c3" uuid = "a65dc6b1-eb27-53a1-bb3e-dea574b5389e" -version = "0.18.1+0" +version = "0.19.0+0" [[deps.Xorg_libxcb_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXau_jll", "Xorg_libXdmcp_jll"] @@ -2644,9 +2628,9 @@ version = "1.4.7+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "00af7ebdc563c9217ecc67776d1bbf037dbcebf4" +git-tree-sha1 = "429722587208f02b1cecbddcd20133df2f1ed796" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.44.0+0" +version = "2.47.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2697,9 +2681,9 @@ version = "0.61.1+0" [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" +git-tree-sha1 = "850b06095ee71f0135d644ffd8a52850699581ed" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.13.1+0" +version = "3.13.3+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] @@ -2744,9 +2728,9 @@ version = "1.28.1+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "e2a7072fc0cdd7949528c1455a3e5da4122e1153" +git-tree-sha1 = "e51150d5ab85cee6fc36726850f0e627ad2e4aba" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.56+0" +version = "1.6.58+0" [[deps.libsodium_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2775,7 +2759,7 @@ version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.52.0+1" +version = "1.59.0+0" [[deps.oneTBB_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] @@ -2786,7 +2770,7 @@ version = "2022.0.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.6.1+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] diff --git a/benchmarks/NonStiffSDE/Project.toml b/benchmarks/NonStiffSDE/Project.toml index 3d8f13b2e..6ac491e48 100644 --- a/benchmarks/NonStiffSDE/Project.toml +++ b/benchmarks/NonStiffSDE/Project.toml @@ -5,13 +5,15 @@ ParameterizedFunctions = "65888b18-ceab-5e60-b2b9-181511a3b968" Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" SDEProblemLibrary = "c72e72a9-a271-4b2b-8966-303ed956772e" SciMLBenchmarks = "31c91b34-3c75-11e9-0341-95557aab0344" +SciMLLogging = "a6db7da4-7206-11f0-1eab-35f2a5dbe1d1" StochasticDiffEq = "789caeaf-c7a9-5a7d-9973-96adeb23e2a0" [compat] -DiffEqDevTools = "2.30" +DiffEqDevTools = "3" DiffEqNoiseProcess = "5" ParameterizedFunctions = "5.3" Plots = "1.4" SDEProblemLibrary = "0.1, 1" SciMLBenchmarks = "0.1" -StochasticDiffEq = "6.50" +SciMLLogging = "1, 2" +StochasticDiffEq = "7" diff --git a/benchmarks/NonlinearProblem/Manifest.toml b/benchmarks/NonlinearProblem/Manifest.toml index b290c0b71..f1565a9c1 100644 --- a/benchmarks/NonlinearProblem/Manifest.toml +++ b/benchmarks/NonlinearProblem/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.10" +julia_version = "1.11.9" manifest_format = "2.0" -project_hash = "dcc6e3ddd6ac876ad921986b9666d50dba4b502f" +project_hash = "e09b24ecc267238fddbfe22a98a5a57d431cbd0c" [[deps.ADTypes]] -git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" +git-tree-sha1 = "bbc22a9a08a0ef6460041086d8a7b27940ed4ffd" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.21.0" +version = "1.22.0" weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] [deps.ADTypes.extensions] @@ -39,9 +39,9 @@ version = "0.4.5" [[deps.Accessors]] deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] -git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +git-tree-sha1 = "2eeb2c9bef11013efc6f8f97f32ee59b146b09fb" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.43" +version = "0.1.44" [deps.Accessors.extensions] AxisKeysExt = "AxisKeys" @@ -63,9 +63,9 @@ version = "0.1.43" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" +git-tree-sha1 = "0761717147821d696c9470a7a86364b2fbd22fd8" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.4.0" +version = "4.5.2" weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] @@ -97,15 +97,22 @@ version = "0.4.2" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" + +[[deps.ArnoldiMethod]] +deps = ["LinearAlgebra", "Random", "StaticArrays"] +git-tree-sha1 = "d57bd3762d308bded22c3b82d033bff85f6195c6" +uuid = "ec485272-7323-5ecc-a04f-4719b315124d" +version = "0.4.0" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" +git-tree-sha1 = "54f895554d05c83e3dd59f6a396671dae8999573" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.22.0" +version = "7.24.0" [deps.ArrayInterface.extensions] + ArrayInterfaceAMDGPUExt = "AMDGPU" ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" @@ -120,6 +127,7 @@ version = "7.22.0" ArrayInterfaceTrackerExt = "Tracker" [deps.ArrayInterface.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" @@ -135,6 +143,7 @@ version = "7.22.0" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +version = "1.11.0" [[deps.Automa]] deps = ["PrecompileTools", "SIMD", "TranscodingStreams"] @@ -156,6 +165,7 @@ version = "0.4.8" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.BaseDirs]] git-tree-sha1 = "bca794632b8a9bbe159d56bf9e31c422671b35e0" @@ -163,10 +173,10 @@ uuid = "18cc8868-cbac-4acf-b575-c8ff214dc66f" version = "1.3.2" [[deps.BenchmarkTools]] -deps = ["Compat", "JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"] -git-tree-sha1 = "7fecfb1123b8d0232218e2da0c213004ff15358d" +deps = ["Compat", "JSON", "Logging", "PrecompileTools", "Printf", "Profile", "Statistics", "UUIDs"] +git-tree-sha1 = "9670d3febc2b6da60a0ae57846ba74670290653f" uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" -version = "1.6.3" +version = "1.8.0" [[deps.Bijections]] git-tree-sha1 = "a2d308fcd4c2fb90e943cf9cd2fbfa9c32b69733" @@ -181,9 +191,9 @@ version = "0.1.6" [[deps.BracketingNonlinearSolve]] deps = ["CommonSolve", "ConcreteStructs", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "fad1448f07155b299bfb925ebf22f5d553bdfb6e" +git-tree-sha1 = "7ad7171d693ae5552ac43862e7f6b61df4471c2b" uuid = "70df07ce-3d50-431d-a3e7-ca6ddb60ac1e" -version = "1.10.0" +version = "1.12.1" weakdeps = ["ChainRulesCore", "ForwardDiff"] [deps.BracketingNonlinearSolve.extensions] @@ -209,6 +219,7 @@ version = "0.2.7" [[deps.CRC32c]] uuid = "8bf52ea8-c179-5cab-976a-9e18b702a9bc" +version = "1.11.0" [[deps.CRlibm]] deps = ["CRlibm_jll"] @@ -230,21 +241,21 @@ version = "1.1.1" [[deps.CairoMakie]] deps = ["CRC32c", "Cairo", "Cairo_jll", "Colors", "FileIO", "FreeType", "GeometryBasics", "LinearAlgebra", "Makie", "PrecompileTools"] -git-tree-sha1 = "5017d6849aff775febd36049f7d926a5fb6677ec" +git-tree-sha1 = "bf2d9cd1ec0c4ce3e0b5aaad192074969413f626" uuid = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0" -version = "0.15.8" +version = "0.15.10" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d0efe2c6fdcdaa1c161d206aa8b933788397ec71" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.5+1" +version = "1.18.6+0" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" +git-tree-sha1 = "12177ad6b3cad7fd50c8b3825ce24a99ad61c18f" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.26.0" +version = "1.26.1" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] @@ -256,6 +267,12 @@ git-tree-sha1 = "05ba0d07cd4fd8b7a39541e31a7b0254704ea581" uuid = "fb6a15b2-703c-40df-9091-08a04967cfa9" version = "0.1.13" +[[deps.CodecZstd]] +deps = ["TranscodingStreams", "Zstd_jll"] +git-tree-sha1 = "da54a6cd93c54950c15adf1d336cfd7d71f51a56" +uuid = "6b39b394-51ab-5f42-8807-6242bab2b4c2" +version = "0.8.7" + [[deps.ColorBrewer]] deps = ["Colors", "JSON"] git-tree-sha1 = "07da79661b919001e6863b81fc572497daa58349" @@ -273,13 +290,11 @@ deps = ["FixedPointNumbers", "Random"] git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" version = "0.12.1" +weakdeps = ["StyledStrings"] [deps.ColorTypes.extensions] StyledStringsExt = "StyledStrings" - [deps.ColorTypes.weakdeps] - StyledStrings = "f489334b-da3d-4c2e-b8f0-e476e12c162b" - [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" @@ -348,9 +363,9 @@ weakdeps = ["InverseFunctions"] [[deps.ComputePipeline]] deps = ["Observables", "Preferences"] -git-tree-sha1 = "76dab592fa553e378f9dd8adea16fe2591aa3daa" +git-tree-sha1 = "3b4be73db165146d8a88e47924f464e55ab053cd" uuid = "95dc2771-c249-4cd0-9c9f-1f3b4330693c" -version = "0.1.6" +version = "0.1.7" [[deps.ConcreteStructs]] git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" @@ -379,6 +394,18 @@ git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" version = "0.6.3" +[[deps.CoreMath]] +deps = ["CoreMath_jll"] +git-tree-sha1 = "8c0480f92b1b1796239156a1b9b1bfb1b39499b4" +uuid = "b7a15901-be09-4a0e-87d2-2e66b0e09b5a" +version = "0.1.0" + +[[deps.CoreMath_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a692a4c1dc59a4b8bc0b6403876eb3250fde2bc3" +uuid = "a38c48d9-6df1-5ac9-9223-b6ada3b5572b" +version = "0.1.0+0" + [[deps.CpuId]] deps = ["Markdown"] git-tree-sha1 = "fcbb72b032692610bfbdb15018ac16a36cf2e406" @@ -397,9 +424,9 @@ version = "1.16.0" [[deps.DataStructures]] deps = ["OrderedCollections"] -git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" +git-tree-sha1 = "e86f4a2805f7f19bec5129bc9150c38208e5dc23" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.19.3" +version = "0.19.4" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -409,6 +436,7 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" [[deps.DelaunayTriangulation]] deps = ["AdaptivePredicates", "EnumX", "ExactPredicates", "Random"] @@ -416,15 +444,22 @@ git-tree-sha1 = "c55f5a9fd67bdbc8e089b5a3111fe4292986a8e8" uuid = "927a84f5-c5f4-47a5-9785-b46e178433df" version = "1.6.6" +[[deps.Dictionaries]] +deps = ["Indexing", "Random", "Serialization"] +git-tree-sha1 = "a55766a9c8f66cf19ffcdbdb1444e249bb4ace33" +uuid = "85a47980-9c8c-11e8-2b9f-f7ca1fa99fb4" +version = "0.4.6" + [[deps.DiffEqBase]] -deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "63613a73dd21fed5bf5ebb3e3b183e7e902b02b2" +deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "b86b6a1269fa822bd0cfdb3118f91674e92595ec" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.210.0" +version = "7.2.0" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" DiffEqBaseChainRulesCoreExt = "ChainRulesCore" + DiffEqBaseDynamicQuantitiesExt = "DynamicQuantities" DiffEqBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] DiffEqBaseFlexUnitsExt = "FlexUnits" DiffEqBaseForwardDiffExt = ["ForwardDiff"] @@ -443,6 +478,7 @@ version = "6.210.0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" + DynamicQuantities = "06fc5a27-2a28-4c7c-a15d-362465fb6821" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FlexUnits = "76e01b6b-c995-4ce6-8559-91e72a3d4e95" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" @@ -459,15 +495,15 @@ version = "6.210.0" [[deps.DiffEqDevTools]] deps = ["DiffEqBase", "DiffEqNoiseProcess", "Distributed", "LinearAlgebra", "Logging", "NLsolve", "RecipesBase", "RecursiveArrayTools", "RootedTrees", "SciMLBase", "Statistics", "StructArrays"] -git-tree-sha1 = "5ff2f5b04b9504e1bc6aa22d0787091738613148" +git-tree-sha1 = "cc290a2fdad4d332ba6a88953eaf5800687ccd49" uuid = "f3b72e0c-5b89-59e1-b016-84e28bfd966d" -version = "2.49.0" +version = "3.0.0" [[deps.DiffEqNoiseProcess]] deps = ["CommonSolve", "DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "PoissonRandom", "QuadGK", "Random", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "b879ca516034469f28becdf01f85f56b45f518b9" +git-tree-sha1 = "5b5fe6eb9e994ff0de4e84fe149b03c706fd6403" uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" -version = "5.27.0" +version = "5.31.0" [deps.DiffEqNoiseProcess.extensions] DiffEqNoiseProcessOptimExt = "Optim" @@ -491,9 +527,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +git-tree-sha1 = "d0250552e42bf7cc36479fd38a6e30004c9e8c2b" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.7.16" +version = "0.7.17" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -503,7 +539,7 @@ version = "0.7.16" DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] - DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGPUArraysCoreExt = ["GPUArraysCore", "Adapt"] DifferentiationInterfaceGTPSAExt = "GTPSA" DifferentiationInterfaceMooncakeExt = "Mooncake" DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] @@ -517,6 +553,7 @@ version = "0.7.16" DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] [deps.DifferentiationInterface.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" @@ -553,12 +590,13 @@ weakdeps = ["ChainRulesCore", "SparseArrays"] [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" +git-tree-sha1 = "e421c1938fafab0165b04dc1a9dbe2a26272952c" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.123" +version = "0.25.125" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -576,10 +614,10 @@ uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" version = "0.9.5" [[deps.DomainSets]] -deps = ["CompositeTypes", "IntervalSets", "LinearAlgebra", "StaticArrays"] -git-tree-sha1 = "c249d86e97a7e8398ce2068dce4c078a1c3464de" +deps = ["CompositeTypes", "FunctionMaps", "IntervalSets", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "1af39efbaf76fb648432b5efaac0d73af6760407" uuid = "5b8099bc-c8ec-5219-889f-1d9e522a28bf" -version = "0.7.16" +version = "0.8.0" weakdeps = ["Makie", "Random"] [deps.DomainSets.extensions] @@ -592,10 +630,10 @@ uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.6.0" [[deps.DynamicPolynomials]] -deps = ["Future", "LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Reexport", "Test"] -git-tree-sha1 = "3f50fa86c968fc1a9e006c07b6bc40ccbb1b704d" +deps = ["LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Reexport", "StarAlgebras", "Test"] +git-tree-sha1 = "5bfabc3827dfdd164359bad6800c115a81280c00" uuid = "7c1d4256-1411-5781-91ec-d7bc3513ac07" -version = "0.6.4" +version = "0.6.6" [[deps.EarCut_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -604,15 +642,15 @@ uuid = "5ae413db-bbd1-5e63-b57d-d24a61df00f5" version = "2.2.4+0" [[deps.EnumX]] -git-tree-sha1 = "7bebc8aad6ee6217c78c5ddcf7ed289d65d0263e" +git-tree-sha1 = "c49898e8438c828577f04b92fc9368c388ac783c" uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.6" +version = "1.0.7" [[deps.Enzyme]] deps = ["CEnum", "EnzymeCore", "Enzyme_jll", "GPUCompiler", "InteractiveUtils", "LLVM", "Libdl", "LinearAlgebra", "ObjectFile", "PrecompileTools", "Preferences", "Printf", "Random", "SparseArrays"] -git-tree-sha1 = "ea65d3121f09b5f31102542db9445163b7c99182" +git-tree-sha1 = "78704dd8d84c93a7f2ac5af0bbb95d26763ec9b9" uuid = "7da242da-08ed-463a-9acd-ee780be4f1d9" -version = "0.13.129" +version = "0.13.140" [deps.Enzyme.extensions] EnzymeBFloat16sExt = "BFloat16s" @@ -632,9 +670,9 @@ version = "0.13.129" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" [[deps.EnzymeCore]] -git-tree-sha1 = "990991b8aa76d17693a98e3a915ac7aa49f08d1a" +git-tree-sha1 = "c6ee69ee502060982d12dbaaf3d8fcb4e835a0d1" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.8.18" +version = "0.8.20" weakdeps = ["Adapt", "ChainRulesCore"] [deps.EnzymeCore.extensions] @@ -643,9 +681,9 @@ weakdeps = ["Adapt", "ChainRulesCore"] [[deps.Enzyme_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "fea21cfc452db42e3878aab62a76896e76d54d12" +git-tree-sha1 = "d3ad8f5eca369ac8803ff7db660028d47debc75d" uuid = "7cc45869-7501-5eee-bdea-0790c847d4ef" -version = "0.0.249+0" +version = "0.0.258+0" [[deps.ExactPredicates]] deps = ["IntervalArithmetic", "Random", "StaticArrays"] @@ -655,9 +693,9 @@ version = "2.2.9" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "27af30de8b5445644e8ffe3bcb0d72049c089cf1" +git-tree-sha1 = "8f05e9a2e7c2e3eb524102bb2926c5743c07fbe1" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.7.3+0" +version = "2.8.0+0" [[deps.ExprTools]] git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" @@ -675,10 +713,10 @@ uuid = "411431e0-e8b7-467b-b5e0-f676ba4f2910" version = "0.1.6" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "01ba9d15e9eae375dc1eb9589df76b3572acd3f2" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libva_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "cac41ca6b2d399adfc95e51240566f8a60a80806" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "8.0.1+0" +version = "8.1.0+0" [[deps.FFTA]] deps = ["AbstractFFTs", "DocStringExtensions", "LinearAlgebra", "MuladdMacro", "Primes", "Random", "Reexport"] @@ -687,10 +725,15 @@ uuid = "b86e33f2-c0db-4aa1-a6e0-ab43e668529e" version = "0.3.1" [[deps.FastBroadcast]] -deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "ab1b34570bcdf272899062e1a56285a53ecaae08" +deps = ["ArrayInterface", "LinearAlgebra"] +git-tree-sha1 = "7feeed2c9a7fa272189a5561bebf0c4ccaedb6ec" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.3.5" +version = "1.3.2" +weakdeps = ["Polyester", "Static"] + + [deps.FastBroadcast.extensions] + FastBroadcastPolyesterExt = "Polyester" + FastBroadcastStaticExt = "Static" [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" @@ -722,9 +765,9 @@ version = "1.3.1" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "6522cfb3b8fe97bec632252263057996cbd3de20" +git-tree-sha1 = "8e9c059d6857607253e837730dbf780b6b151acd" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.18.0" +version = "1.19.0" [deps.FileIO.extensions] HTTPExt = "HTTP" @@ -761,6 +804,7 @@ weakdeps = ["Mmap", "Test"] [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" +version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] @@ -777,9 +821,9 @@ weakdeps = ["PDMats", "SparseArrays", "StaticArrays", "Statistics"] [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "9340ca07ca27093ff68418b7558ca37b05f8aeb1" +git-tree-sha1 = "f7017a4f337f8df189fcce98e32b67a1298a2115" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.29.0" +version = "2.31.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -812,9 +856,9 @@ version = "1.3.7" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "eef4c86803f47dcb61e9b8790ecaa96956fdd8ae" +git-tree-sha1 = "cddeab6487248a39dae1a960fff0ac17b2a28888" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "1.3.2" +version = "1.3.3" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -828,9 +872,9 @@ version = "4.1.1" [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "2c5512e11c791d1baed2049c5652441b28fc6a31" +git-tree-sha1 = "70329abc09b886fd2c5d94ad2d9527639c421e3e" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.4+0" +version = "2.14.3+1" [[deps.FreeTypeAbstraction]] deps = ["BaseDirs", "ColorVectorSpace", "Colors", "FreeType", "GeometryBasics", "Mmap"] @@ -844,20 +888,36 @@ git-tree-sha1 = "7a214fdac5ed5f59a22c2d9a885a16da1c74bbc7" uuid = "559328eb-81f9-559d-9380-de523a88c83c" version = "1.0.17+0" +[[deps.FunctionMaps]] +deps = ["CompositeTypes", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "31bd99a57edf98990d1c21486032963955450e8d" +uuid = "a85aefff-f8ca-4649-a888-c8e5398bc76c" +version = "0.1.2" + [[deps.FunctionWrappers]] git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" version = "1.1.3" [[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +deps = ["FunctionWrappers", "PrecompileTools", "TruncatedStacktraces"] +git-tree-sha1 = "c1b0c3a166a2a393257aa888787ca817532e14ce" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" +version = "1.8.0" + + [deps.FunctionWrappersWrappers.extensions] + FunctionWrappersWrappersEnzymeExt = ["Enzyme", "EnzymeCore"] + FunctionWrappersWrappersMooncakeExt = "Mooncake" + + [deps.FunctionWrappersWrappers.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" +version = "1.11.0" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -867,9 +927,9 @@ version = "0.2.0" [[deps.GPUCompiler]] deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "PrecompileTools", "Preferences", "Scratch", "Serialization", "TOML", "Tracy", "UUIDs"] -git-tree-sha1 = "966946d226e8b676ca6409454718accb18c34c54" +git-tree-sha1 = "fedfe5e7db7035271c3f58359007f971da1dde87" uuid = "61eb1bfa-7361-4325-ad38-22787b887f55" -version = "1.8.2" +version = "1.9.1" [[deps.GeometryBasics]] deps = ["EarCut_jll", "Extents", "IterTools", "LinearAlgebra", "PrecompileTools", "Random", "StaticArrays"] @@ -915,9 +975,9 @@ version = "3.7.0+0" [[deps.Git_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "dc34a3e3d96b4ed305b641e626dc14c12b7824b8" +git-tree-sha1 = "0dd4cfb426924210c8f42742751cbde74b27bfa3" uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb" -version = "2.53.0+0" +version = "2.54.0+0" [[deps.Glib_jll]] deps = ["Artifacts", "GettextRuntime_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] @@ -937,6 +997,16 @@ git-tree-sha1 = "8a6dbda1fd736d60cc477d99f2e7a042acfa46e8" uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" version = "1.3.15+0" +[[deps.Graphs]] +deps = ["ArnoldiMethod", "DataStructures", "Inflate", "LinearAlgebra", "Random", "SimpleTraits", "SparseArrays", "Statistics"] +git-tree-sha1 = "7eb45fe833a5b7c51cf6d89c5a841d5967e44be3" +uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" +version = "1.14.0" +weakdeps = ["Distributed", "SharedArrays"] + + [deps.Graphs.extensions] + GraphsSharedArraysExt = "SharedArrays" + [[deps.GridLayoutBase]] deps = ["GeometryBasics", "InteractiveUtils", "Observables"] git-tree-sha1 = "93d5c27c8de51687a2c70ec0716e6e76f298416f" @@ -968,9 +1038,9 @@ version = "0.1.18" [[deps.Hwloc_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "XML2_jll", "Xorg_libpciaccess_jll"] -git-tree-sha1 = "157e2e5838984449e44af851a52fe374d56b9ada" +git-tree-sha1 = "baaaebd42ed9ee1bd9173cfd56910e55a8622ee1" uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8" -version = "2.13.0+0" +version = "2.13.0+1" [[deps.HypergeometricFunctions]] deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] @@ -980,9 +1050,9 @@ version = "0.3.28" [[deps.IJulia]] deps = ["Base64", "Conda", "Dates", "InteractiveUtils", "Logging", "Markdown", "Pkg", "PrecompileTools", "Printf", "REPL", "Random", "SHA", "Sockets", "UUIDs", "ZMQ"] -git-tree-sha1 = "4909c2fbc99972c57e0921b6848f8669abc58a34" +git-tree-sha1 = "102656c4efc9737f892e1bca7e66ae374c650740" uuid = "7073ff75-c697-5162-941a-fcdaad2a7d2a" -version = "1.34.3" +version = "1.34.4" [deps.IJulia.extensions] IJuliaPythonCallExt = "PythonCall" @@ -1039,6 +1109,11 @@ git-tree-sha1 = "6c676e79f98abb6d33fa28122cad099f1e464afe" uuid = "40713840-3770-5561-ab4c-a76e7d0d7895" version = "0.2.1" +[[deps.Indexing]] +git-tree-sha1 = "ce1566720fd6b19ff3411404d4b977acd4814f9f" +uuid = "313cdc1a-70c2-5d6a-ae34-0150d3930a38" +version = "1.1.1" + [[deps.IndirectArrays]] git-tree-sha1 = "012e604e1c7458645cb8b436f8fba789a51b257f" uuid = "9b13fd28-a010-5f03-acff-a1bbcff69959" @@ -1063,6 +1138,7 @@ version = "2025.2.0+0" [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" +version = "1.11.0" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] @@ -1076,16 +1152,17 @@ weakdeps = ["ForwardDiff", "Unitful"] InterpolationsUnitfulExt = "Unitful" [[deps.IntervalArithmetic]] -deps = ["CRlibm", "MacroTools", "OpenBLASConsistentFPCSR_jll", "Printf", "Random", "RoundingEmulator"] -git-tree-sha1 = "02b61501dbe6da3b927cc25dacd7ce32390ee970" +deps = ["CRlibm", "CoreMath", "MacroTools", "OpenBLASConsistentFPCSR_jll", "Printf", "Random", "RoundingEmulator"] +git-tree-sha1 = "3e6273749a2df3a5c9067657510ad01ba5039a92" uuid = "d1acc4aa-44c8-5952-acd4-ba5d80a2a253" -version = "1.0.2" +version = "1.0.8" [deps.IntervalArithmetic.extensions] IntervalArithmeticArblibExt = "Arblib" IntervalArithmeticDiffRulesExt = "DiffRules" IntervalArithmeticForwardDiffExt = "ForwardDiff" IntervalArithmeticIntervalSetsExt = "IntervalSets" + IntervalArithmeticIrrationalConstantsExt = "IrrationalConstants" IntervalArithmeticLinearAlgebraExt = "LinearAlgebra" IntervalArithmeticRecipesBaseExt = "RecipesBase" IntervalArithmeticSparseArraysExt = "SparseArrays" @@ -1095,14 +1172,15 @@ version = "1.0.2" DiffRules = "b552c78f-8df3-52c6-915a-8e097449b14b" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + IrrationalConstants = "92d709cd-6900-40b7-9082-c6be49f344b6" LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[deps.IntervalSets]] -git-tree-sha1 = "d966f85b3b7a8e49d034d27a189e9a4874b4391a" +git-tree-sha1 = "79d6bd28c8d9bccc2229784f1bd637689b256377" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.13" +version = "0.7.14" weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] @@ -1167,9 +1245,9 @@ version = "0.1.6" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "b6893345fd6658c8e475d40155789f4860ac3b21" +git-tree-sha1 = "c0c9b76f3520863909825cbecdef58cd63de705a" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.1.4+0" +version = "3.1.5+0" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTA", "Interpolations", "StatsBase"] @@ -1179,9 +1257,9 @@ version = "0.6.11" [[deps.Krylov]] deps = ["LinearAlgebra", "Printf", "SparseArrays"] -git-tree-sha1 = "125d65fe5042faf078383312dd060adf11d90802" +git-tree-sha1 = "c4d19f51afc7ba2afbe32031b8f2d21b11c9e26e" uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" -version = "0.10.5" +version = "0.10.6" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1191,15 +1269,15 @@ version = "3.100.3+0" [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "aaafe88dccbd957a8d82f7d05be9b69172e0cee3" +git-tree-sha1 = "17b94ecafcfa45e8360a4fc9ca6b583b049e4e37" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "4.0.1+0" +version = "4.1.0+0" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Unicode"] -git-tree-sha1 = "69e4739502b7ab5176117e97e1664ed181c35036" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "PrecompileTools", "Preferences", "Printf", "Unicode"] +git-tree-sha1 = "85592339c4363f40863f0b61f9cba80b885070c3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "9.4.6" +version = "9.7.1" [deps.LLVM.extensions] BFloat16sExt = "BFloat16s" @@ -1209,9 +1287,9 @@ version = "9.4.6" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "8e76807afb59ebb833e9b131ebf1a8c006510f33" +git-tree-sha1 = "f1d1adfff151fd02b4062d1af82df02052dc4a0c" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.38+0" +version = "0.0.42+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1219,12 +1297,6 @@ git-tree-sha1 = "eb62a3deb62fc6d8822c0c4bef73e4412419c5d8" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" version = "18.1.8+0" -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "1c602b1127f4751facb671441ca72715cc95938a" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.3+0" - [[deps.LaTeXStrings]] git-tree-sha1 = "dda21b8cbd6a6c40d9d02a73230f9d70fed6918c" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" @@ -1257,6 +1329,7 @@ version = "0.1.17" [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" +version = "1.11.0" [[deps.LazyModules]] git-tree-sha1 = "a560dd966b386ac9ae60bdd3a3d3a326062d3c3e" @@ -1271,16 +1344,17 @@ version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.4.0+0" +version = "8.6.0+0" [[deps.LibGit2]] deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +version = "1.11.0" [[deps.LibGit2_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.6.4+0" +version = "1.7.2+0" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] @@ -1295,6 +1369,7 @@ version = "0.13.1+0" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" +version = "1.11.0" [[deps.Libffi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1316,9 +1391,9 @@ version = "1.18.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "97bbca976196f2a1eb9607131cb108c69ec3f8a6" +git-tree-sha1 = "cc3ad4faf30015a3e8094c9b5b7f19e85bdf2386" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] @@ -1328,15 +1403,15 @@ version = "4.7.2+0" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d0205286d9eceadc518742860bf23f703779a3d6" +git-tree-sha1 = "d620582b1f0cbe2c72dd1d5bd195a9ce73370ab1" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.LineSearch]] deps = ["ADTypes", "CommonSolve", "ConcreteStructs", "FastClosures", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "SciMLBase", "SciMLJacobianOperators", "StaticArraysCore"] -git-tree-sha1 = "9f7253c0574b4b585c8909232adb890930da980a" +git-tree-sha1 = "fd58a77c92e7c8f1db25c9839127d52943a49349" uuid = "87fe0de2-c867-4266-b59a-2f0a94fc965b" -version = "0.1.6" +version = "0.1.9" weakdeps = ["LineSearches"] [deps.LineSearch.extensions] @@ -1351,33 +1426,41 @@ version = "7.5.1" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +version = "1.11.0" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "f9e19cacc616da676db6fbb74827d3979ad6c0ae" +deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] +git-tree-sha1 = "42b5cb44317e89ef75dd841c9c8eba9045bf9ff0" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "3.59.1" +version = "3.75.0" [deps.LinearSolve.extensions] LinearSolveAMDGPUExt = "AMDGPU" + LinearSolveAlgebraicMultigridExt = "AlgebraicMultigrid" LinearSolveBLISExt = ["blis_jll", "LAPACK_jll"] LinearSolveBandedMatricesExt = "BandedMatrices" LinearSolveBlockDiagonalsExt = "BlockDiagonals" LinearSolveCUDAExt = "CUDA" LinearSolveCUDSSExt = "CUDSS" LinearSolveCUSOLVERRFExt = ["CUSOLVERRF", "SparseArrays"] + LinearSolveChainRulesCoreExt = "ChainRulesCore" LinearSolveCliqueTreesExt = ["CliqueTrees", "SparseArrays"] + LinearSolveElementalExt = "Elemental" LinearSolveEnzymeExt = ["EnzymeCore", "SparseArrays"] LinearSolveFastAlmostBandedMatricesExt = "FastAlmostBandedMatrices" LinearSolveFastLapackInterfaceExt = "FastLapackInterface" LinearSolveForwardDiffExt = "ForwardDiff" + LinearSolveGinkgoExt = ["Ginkgo", "SparseArrays"] LinearSolveHYPREExt = "HYPRE" LinearSolveIterativeSolversExt = "IterativeSolvers" LinearSolveKernelAbstractionsExt = "KernelAbstractions" LinearSolveKrylovKitExt = "KrylovKit" LinearSolveMetalExt = "Metal" LinearSolveMooncakeExt = "Mooncake" + LinearSolvePETScCSRExt = ["PETSc", "SparseArrays", "SparseMatricesCSR"] LinearSolvePETScExt = ["PETSc", "SparseArrays"] + LinearSolvePETScMPIExt = ["PETSc", "PartitionedArrays", "SparseArrays", "SparseMatricesCSR"] + LinearSolveParUExt = ["ParU_jll", "SparseArrays"] LinearSolvePardisoExt = ["Pardiso", "SparseArrays"] LinearSolveRecursiveFactorizationExt = "RecursiveFactorization" LinearSolveSparseArraysExt = "SparseArrays" @@ -1385,16 +1468,20 @@ version = "3.59.1" [deps.LinearSolve.weakdeps] AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + AlgebraicMultigrid = "2169fc97-5a83-5252-b627-83903c6c433c" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" CUSOLVERRF = "a8cc9031-bad2-4722-94f5-40deabb4245c" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" + Elemental = "902c3f28-d1ec-5e7e-8399-a24c3845ee38" EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" FastLapackInterface = "29a986be-02c6-4525-aec4-84b980013641" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Ginkgo = "4c8bd3c9-ead9-4b5e-a625-08f1338ba0ec" HYPRE = "b5ffcf37-a2bd-41ab-a3da-4bd9bc8ad771" IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" @@ -1403,9 +1490,12 @@ version = "3.59.1" Metal = "dde4c033-4e86-420c-a63e-0dd931031962" Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" PETSc = "ace2c81b-2b5f-4b1e-a30d-d662738edfe0" + ParU_jll = "9e0b026c-e8ce-559c-a2c4-6a3d5c955bc9" Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" + PartitionedArrays = "5a9dfac6-5c52-46f7-8278-5e2210713be9" RecursiveFactorization = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseMatricesCSR = "a0a7dd2c-ebf4-11e9-1f05-cf50bc540ca1" Sparspak = "e56a9233-b9d6-4f03-8d0f-1825330902ac" blis_jll = "6136c539-28a5-5bf0-87cc-b183200dce32" @@ -1427,6 +1517,7 @@ version = "0.3.29" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" +version = "1.11.0" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] @@ -1464,10 +1555,10 @@ uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" version = "2025.2.0+0" [[deps.MPI]] -deps = ["Distributed", "DocStringExtensions", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "PkgVersion", "PrecompileTools", "Requires", "Serialization", "Sockets"] -git-tree-sha1 = "a61ecf714d71064b766d481ef43c094d4c6e3c52" +deps = ["Distributed", "DocStringExtensions", "Libdl", "MPIABI_jll", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "PkgVersion", "PrecompileTools", "Serialization", "Sockets"] +git-tree-sha1 = "ff6309186ff377782d01f6577d19ae1b5f5185c5" uuid = "da04e1cc-30fd-572f-bb4f-1f8673147195" -version = "0.20.23" +version = "0.20.26" [deps.MPI.extensions] AMDGPUExt = "AMDGPU" @@ -1477,23 +1568,29 @@ version = "0.20.23" AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" +[[deps.MPIABI_jll]] +deps = ["Artifacts", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] +git-tree-sha1 = "9be143b6045719e8fb019d2b3bc2aebad1184fef" +uuid = "b5ada748-db0f-5fc0-8972-9331c762740c" +version = "0.1.5+0" + [[deps.MPICH_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] -git-tree-sha1 = "9341048b9f723f2ae2a72a5269ac2f15f80534dc" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "Libdl", "MPIPreferences", "TOML"] +git-tree-sha1 = "07dbec8aab01696edc0151a401a6cdfe95b9b885" uuid = "7cb0a576-ebde-5e09-9194-50597f1243b4" -version = "4.3.2+0" +version = "5.0.1+0" [[deps.MPIPreferences]] deps = ["Libdl", "Preferences"] -git-tree-sha1 = "c105fe467859e7f6e9a852cb15cb4301126fac07" +git-tree-sha1 = "8e98d5d80b87403c311fd51e8455d4546ba7a5f8" uuid = "3da0fdf6-3ccc-4f1b-acd9-58baa6c99267" -version = "0.1.11" +version = "0.1.12" [[deps.MPItrampoline_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML"] -git-tree-sha1 = "36c2d142e7d45fb98b5f83925213feb3292ca348" +git-tree-sha1 = "675df097f8eeb28998b2cfe3b25655af73d5f7df" uuid = "f1f71cc9-e9ae-5b93-9b94-4fe0e1ad3748" -version = "5.5.5+0" +version = "5.5.6+0" [[deps.MacroTools]] git-tree-sha1 = "1e0228a030642014fe5cfe68c2c0a818f9e3f522" @@ -1502,9 +1599,9 @@ version = "0.5.16" [[deps.Makie]] deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "ComputePipeline", "Contour", "Dates", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FilePaths", "FixedPointNumbers", "Format", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageBase", "ImageIO", "InteractiveUtils", "Interpolations", "IntervalSets", "InverseFunctions", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "Markdown", "MathTeXEngine", "Observables", "OffsetArrays", "PNGFiles", "Packing", "Pkg", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Scratch", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun", "Unitful"] -git-tree-sha1 = "d1b974f376c24dad02c873e951c5cd4e351cd7c2" +git-tree-sha1 = "0708c6a1f3cb18ba6482c4174058084c8d6deaf4" uuid = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" -version = "0.24.8" +version = "0.24.10" [deps.Makie.extensions] MakieDynamicQuantitiesExt = "DynamicQuantities" @@ -1531,6 +1628,7 @@ version = "0.1.11" [[deps.Markdown]] deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +version = "1.11.0" [[deps.MathTeXEngine]] deps = ["AbstractTrees", "Automa", "DataStructures", "FreeTypeAbstraction", "GeometryBasics", "LaTeXStrings", "REPL", "RelocatableFolders", "UnicodeFun"] @@ -1551,7 +1649,7 @@ weakdeps = ["SparseArrays"] [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+1" +version = "2.28.6+0" [[deps.MicrosoftMPI_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1567,6 +1665,7 @@ version = "1.2.0" [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" +version = "1.11.0" [[deps.MosaicViews]] deps = ["MappedArrays", "OffsetArrays", "PaddedViews", "StackViews"] @@ -1582,7 +1681,7 @@ version = "0.3.7" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2023.1.10" +version = "2023.12.12" [[deps.MuladdMacro]] git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" @@ -1590,10 +1689,10 @@ uuid = "46d2c3a1-f734-5fdb-9937-b9b9aeba4221" version = "0.2.4" [[deps.MultivariatePolynomials]] -deps = ["DataStructures", "LinearAlgebra", "MutableArithmetics"] -git-tree-sha1 = "d38b8653b1cdfac5a7da3b819c0a8d6024f9a18c" +deps = ["DataStructures", "LinearAlgebra", "MutableArithmetics", "StarAlgebras"] +git-tree-sha1 = "4838893d9b035c2f6967c0d533350e1755b58a70" uuid = "102ac46a-7ee4-5c85-9060-abc95bfdeaa3" -version = "0.5.13" +version = "0.5.19" weakdeps = ["ChainRulesCore"] [deps.MultivariatePolynomials.extensions] @@ -1607,9 +1706,9 @@ version = "1.0.21" [[deps.MutableArithmetics]] deps = ["LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "22df8573f8e7c593ac205455ca088989d0a2c7a0" +git-tree-sha1 = "7c25249fc13a070f5ba433c50e21e22bb33c6fb0" uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" -version = "1.6.7" +version = "1.7.1" [[deps.NLSolversBase]] deps = ["ADTypes", "DifferentiationInterface", "Distributed", "FiniteDiff", "ForwardDiff"] @@ -1641,15 +1740,15 @@ version = "1.2.0" [[deps.NonlinearProblemLibrary]] deps = ["LinearAlgebra", "SciMLBase"] -git-tree-sha1 = "ae515e695560d7850468e8256ab398762adebfe0" +git-tree-sha1 = "f4eec66670c8ab8d4008037d27e705fe007e9f26" uuid = "b7050fa9-e91f-4b37-bcee-a89a063da141" -version = "0.1.4" +version = "0.1.5" [[deps.NonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SciMLLogging", "SimpleNonlinearSolve", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "d27bcf0cebf8786edcc2eaa4455c959e680334e7" +deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SciMLLogging", "Setfield", "SimpleNonlinearSolve", "StaticArraysCore", "SymbolicIndexingInterface"] +git-tree-sha1 = "ae0b0f875e4dfda538ab6977ec7939126ee9a1fe" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "4.16.0" +version = "4.19.0" [deps.NonlinearSolve.extensions] NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" @@ -1679,10 +1778,10 @@ version = "4.16.0" Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" [[deps.NonlinearSolveBase]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "LinearAlgebra", "LogExpFunctions", "Markdown", "MaybeInplace", "PreallocationTools", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "7208e90967acd77aa6b4d46ac65cc5ac1643794c" +deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "LogExpFunctions", "Markdown", "MaybeInplace", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] +git-tree-sha1 = "a19a5df29ef2b197499fc631fa1a59385ae15262" uuid = "be0214bd-f91f-a760-ac4e-3421ce2b2da0" -version = "2.14.0" +version = "2.25.0" [deps.NonlinearSolveBase.extensions] NonlinearSolveBaseBandedMatricesExt = "BandedMatrices" @@ -1712,15 +1811,15 @@ version = "2.14.0" [[deps.NonlinearSolveFirstOrder]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConcreteStructs", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLJacobianOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "eea7cbe389b168c77df7ff779fb7277019c685c8" +git-tree-sha1 = "ce68820a4f421fb5bee7ec4dcf875aff33886bfb" uuid = "5959db7a-ea39-4486-b5fe-2dd0bf03d60d" -version = "2.0.0" +version = "2.1.1" [[deps.NonlinearSolveQuasiNewton]] deps = ["ArrayInterface", "CommonSolve", "ConcreteStructs", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLOperators", "StaticArraysCore"] -git-tree-sha1 = "ade27e8e9566b6cec63ee62f6a6650a11cf9a2eb" +git-tree-sha1 = "538432ca1aea8bf63db02929bf870501f8a7c64c" uuid = "9a2c21bd-3a47-402d-9113-8faf9a0ee114" -version = "1.12.0" +version = "1.13.1" weakdeps = ["ForwardDiff"] [deps.NonlinearSolveQuasiNewton.extensions] @@ -1728,9 +1827,9 @@ weakdeps = ["ForwardDiff"] [[deps.NonlinearSolveSpectralMethods]] deps = ["CommonSolve", "ConcreteStructs", "LineSearch", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "eafd027b5cd768f19bb5de76c0e908a9065ddd36" +git-tree-sha1 = "a3781e12becdf0ce5520bd97ec617e879bf4e9f2" uuid = "26075421-4e9a-44e1-8bd1-420ed7ad02b2" -version = "1.6.0" +version = "1.7.1" weakdeps = ["ForwardDiff"] [deps.NonlinearSolveSpectralMethods.extensions] @@ -1764,20 +1863,20 @@ version = "1.3.6+0" [[deps.OpenBLAS32_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6065c4cff8fee6c6770b277af45d5082baacdba1" +git-tree-sha1 = "dd0d9979377e43918a80486a562ddedcc6d9bdf3" uuid = "656ef2d0-ae68-5445-9ca0-591084a874a2" -version = "0.3.24+0" +version = "0.3.33+0" [[deps.OpenBLASConsistentFPCSR_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "567515ca155d0020a45b05175449b499c63e7015" +git-tree-sha1 = "3287ec88df50429a934ebc6cf14606215e27b987" uuid = "6cdc7f73-28fd-5e50-80fb-958a8875b1af" -version = "0.3.29+0" +version = "0.3.33+0" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.23+4" +version = "0.3.27+1" [[deps.OpenEXR]] deps = ["Colors", "FileIO", "OpenEXR_jll"] @@ -1787,9 +1886,9 @@ version = "0.3.3" [[deps.OpenEXR_jll]] deps = ["Artifacts", "Imath_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "df9b7c88c2e7a2e77146223c526bf9e236d5f450" +git-tree-sha1 = "9ac7c730c53b3b5d9a73fb900ac4b4fc263774db" uuid = "18a262bb-aa17-5467-a713-aee519bc75cb" -version = "3.4.4+0" +version = "3.4.9+0" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] @@ -1798,21 +1897,21 @@ version = "0.8.5+0" [[deps.OpenMPI_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIPreferences", "TOML", "Zlib_jll"] -git-tree-sha1 = "ab6596a9d8236041dcd59b5b69316f28a8753592" +git-tree-sha1 = "6d6c0ca4824268c1a7dca1f4721c535ac63d9074" uuid = "fe0851c0-eecd-5654-98d4-656369965a5c" -version = "5.0.9+0" +version = "5.0.11+0" [[deps.OpenSSH_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "OpenSSL_jll", "Zlib_jll"] -git-tree-sha1 = "301412a644646fdc0ad67d0a87487466b491e53d" +git-tree-sha1 = "57baa4b81a24c2910afbb6d853aa0685e4312bf7" uuid = "9bd350c2-7e96-507f-8002-3f2e150b4e1b" -version = "10.2.1+0" +version = "10.3.1+0" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "c9cbeda6aceffc52d8a0017e71db27c7a7c0beaf" +git-tree-sha1 = "2ac022577e5eac7da040de17776d51bb770cd895" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.5.5+0" +version = "3.5.6+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -1847,16 +1946,16 @@ weakdeps = ["StatsBase"] StatsBaseExt = "StatsBase" [[deps.PETSc]] -deps = ["ForwardDiff", "Libdl", "LinearAlgebra", "MPI", "MPIPreferences", "OffsetArrays", "PETSc_jll", "Pkg", "SparseArrays", "Statistics", "UnicodePlots"] -git-tree-sha1 = "1da83a26b4360c3be5f619c71096d6eefe99f261" +deps = ["ForwardDiff", "Libdl", "LinearAlgebra", "MPI", "MPIPreferences", "OffsetArrays", "PETSc_jll", "Pkg", "Preferences", "SparseArrays", "Statistics", "UnicodePlots"] +git-tree-sha1 = "52a220c7455183c1eb316920a21edb327e02ddcc" uuid = "ace2c81b-2b5f-4b1e-a30d-d662738edfe0" -version = "0.4.6" +version = "0.4.9" [[deps.PETSc_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenBLAS32_jll", "OpenMPI_jll", "SCALAPACK32_jll", "TOML"] -git-tree-sha1 = "e67be069aea02ce689bd94eb3f7ee011396bf1bd" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "MPIABI_jll", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenBLAS32_jll", "OpenMPI_jll", "SCALAPACK32_jll", "TOML", "mpif_jll"] +git-tree-sha1 = "ebe6eee164b150f43726ecf03f8b751ac6dd8050" uuid = "8fa3689e-f0b9-5420-9873-adf6ccf46f2d" -version = "3.22.0+0" +version = "3.22.1+0" [[deps.PNGFiles]] deps = ["Base64", "CEnum", "ImageCore", "IndirectArrays", "OffsetArrays", "libpng_jll"] @@ -1878,15 +1977,15 @@ version = "0.5.12" [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "0662b083e11420952f2e62e17eddae7fc07d5997" +git-tree-sha1 = "58e5ed5e386e156bd93e86b305ebd21ac63d2d04" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" -version = "1.57.0+0" +version = "1.57.1+0" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "7d2f8f21da5db6a806faf7b9b292296da42b2810" +git-tree-sha1 = "5d5e0a78e971354b1c7bff0655d11fdc1b0e12c8" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.3" +version = "2.8.4" [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] @@ -1895,9 +1994,13 @@ uuid = "30392449-352a-5448-841d-b1acce4e97dc" version = "0.44.2+0" [[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.10.0" +version = "1.11.0" +weakdeps = ["REPL"] + + [deps.Pkg.extensions] + REPLExt = "REPL" [[deps.PkgVersion]] deps = ["Pkg"] @@ -1942,9 +2045,9 @@ version = "0.1.2" [[deps.PreallocationTools]] deps = ["Adapt", "ArrayInterface", "PrecompileTools"] -git-tree-sha1 = "dc8d6bde5005a0eac05ae8faf1eceaaca166cfa4" +git-tree-sha1 = "e16b73bf892c55d16d53c9c0dbd0fb31cb7e25da" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "1.1.2" +version = "1.2.0" [deps.PreallocationTools.extensions] PreallocationToolsForwardDiffExt = "ForwardDiff" @@ -1964,15 +2067,15 @@ version = "1.2.1" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "522f093a29b31a93e34eaea17ba055d850edea28" +git-tree-sha1 = "8b770b60760d4451834fe79dd483e318eee709c4" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.5.1" +version = "1.5.2" [[deps.PrettyTables]] deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "REPL", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "211530a7dc76ab59087f4d4d1fc3f086fbe87594" +git-tree-sha1 = "624de6279ab7d94fc9f672f0068107eb6619732c" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "3.2.3" +version = "3.3.2" [deps.PrettyTables.extensions] PrettyTablesTypstryExt = "Typstry" @@ -1989,10 +2092,11 @@ version = "0.5.7" [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" +version = "1.11.0" [[deps.Profile]] -deps = ["Printf"] uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79" +version = "1.11.0" [[deps.ProgressMeter]] deps = ["Distributed", "Printf"] @@ -2013,21 +2117,23 @@ version = "1.0.2" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9da16da70037ba9d701192e27befedefb91ec284" +git-tree-sha1 = "5e8e8b0ab68215d7a2b14b9921a946fee794749e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.11.2" +version = "2.11.3" weakdeps = ["Enzyme"] [deps.QuadGK.extensions] QuadGKEnzymeExt = "Enzyme" [[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" +version = "1.11.0" [[deps.Random]] deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +version = "1.11.0" [[deps.RangeArrays]] git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" @@ -2057,16 +2163,19 @@ version = "1.3.4" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "LinearAlgebra", "PrecompileTools", "RecipesBase", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "18d2a6fd1ea9a8205cadb3a5704f8e51abdd748b" +git-tree-sha1 = "57b6fb3932fc8d1fc911f840d2c9de5fe3ba5008" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.48.0" +version = "4.3.0" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsCUDAExt = "CUDA" RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsFastBroadcastPolyesterExt = ["FastBroadcast", "Polyester"] RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsKernelAbstractionsExt = "KernelAbstractions" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsMooncakeExt = "Mooncake" RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] RecursiveArrayToolsStatisticsExt = "Statistics" @@ -2076,11 +2185,14 @@ version = "3.48.0" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" @@ -2149,15 +2261,15 @@ version = "0.2.1" [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "7257165d5477fd1025f7cb656019dcb6b0512c38" +git-tree-sha1 = "cfcdc949c4660544ab0fdeed169561cb22f835f4" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.17" +version = "0.5.18" [[deps.SCALAPACK32_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "TOML", "libblastrampoline_jll"] -git-tree-sha1 = "1dc0120b57a57bc90621a7cd0137ad2b86e94f81" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "MPIABI_jll", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "TOML", "libblastrampoline_jll", "mpif_jll"] +git-tree-sha1 = "a53f91a9a6dc23971c8c2bc805edb665e063c980" uuid = "aabda75e-bfe4-5a37-92e3-ffe54af3c273" -version = "2.2.2+0" +version = "2.2.3+0" [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" @@ -2181,10 +2293,10 @@ uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" version = "0.6.43" [[deps.SciMLBase]] -deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Moshi", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "821f71a498fa85726c528bd804f1ebe921792e27" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "Random", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] +git-tree-sha1 = "450a8405f96d0a7c6caabed0852def06ba8c6bf1" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.144.0" +version = "3.7.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2192,7 +2304,6 @@ version = "2.144.0" SciMLBaseDistributionsExt = "Distributions" SciMLBaseEnzymeExt = "Enzyme" SciMLBaseForwardDiffExt = "ForwardDiff" - SciMLBaseMLStyleExt = "MLStyle" SciMLBaseMakieExt = "Makie" SciMLBaseMeasurementsExt = "Measurements" SciMLBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" @@ -2212,7 +2323,6 @@ version = "2.144.0" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - MLStyle = "d8e11817-5142-5d16-987a-aa16d5891078" Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" @@ -2233,9 +2343,9 @@ version = "0.1.3" [[deps.SciMLJacobianOperators]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DifferentiationInterface", "FastClosures", "LinearAlgebra", "SciMLBase", "SciMLOperators"] -git-tree-sha1 = "e96d5e96debf7f80a50d0b976a13dea556ccfd3a" +git-tree-sha1 = "7156a5b51cba1bea33a82a036939ead4131f92bc" uuid = "19f34311-ddf3-4b8b-af20-060888a46c0e" -version = "0.1.12" +version = "0.1.13" [[deps.SciMLLogging]] deps = ["Logging", "LoggingExtras", "Preferences"] @@ -2249,9 +2359,9 @@ weakdeps = ["Tracy"] [[deps.SciMLOperators]] deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra"] -git-tree-sha1 = "794c760e6aafe9f40dcd7dd30526ea33f0adc8b7" +git-tree-sha1 = "4a3bd21622633a70fde04bc6d072f59e482ff66f" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "1.15.1" +version = "1.18.0" weakdeps = ["SparseArrays", "StaticArraysCore"] [deps.SciMLOperators.extensions] @@ -2277,6 +2387,7 @@ version = "1.3.0" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" +version = "1.11.0" [[deps.Setfield]] deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] @@ -2293,6 +2404,7 @@ version = "0.5.0" [[deps.SharedArrays]] deps = ["Distributed", "Mmap", "Random", "Serialization"] uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" +version = "1.11.0" [[deps.Showoff]] deps = ["Dates", "Grisu"] @@ -2308,9 +2420,9 @@ version = "0.4.1" [[deps.SimpleNonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "744c3f0fb186ad28376199c1e72ca39d0c614b5d" +git-tree-sha1 = "d688de789b7e643326caf9a1051376dadbcd8873" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "2.11.0" +version = "2.11.1" [deps.SimpleNonlinearSolve.extensions] SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" @@ -2336,6 +2448,7 @@ version = "0.1.5" [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" +version = "1.11.0" [[deps.SortingAlgorithms]] deps = ["DataStructures"] @@ -2346,7 +2459,7 @@ version = "1.2.2" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -version = "1.10.0" +version = "1.11.0" [[deps.SparseBandedMatrices]] deps = ["LinearAlgebra", "PrecompileTools"] @@ -2376,28 +2489,31 @@ version = "1.2.1" [[deps.SparseMatrixColorings]] deps = ["ADTypes", "DocStringExtensions", "LinearAlgebra", "PrecompileTools", "Random", "SparseArrays"] -git-tree-sha1 = "6ed48d9a3b22417c765dc273ae3e1e4de035e7c8" +git-tree-sha1 = "f63d76c7b7c329cf11badd564fd8ba877b09c3fe" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.4.23" +version = "0.4.27" [deps.SparseMatrixColorings.extensions] - SparseMatrixColoringsCUDAExt = "CUDA" + SparseMatrixColoringsCUDAExt = ["CUDA", "cuSPARSE"] SparseMatrixColoringsCliqueTreesExt = "CliqueTrees" SparseMatrixColoringsColorsExt = "Colors" + SparseMatrixColoringsGPUArraysExt = "GPUArrays" SparseMatrixColoringsJuMPExt = ["JuMP", "MathOptInterface"] [deps.SparseMatrixColorings.weakdeps] CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" + GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" JuMP = "4076af6c-e467-56ae-b986-b466b2749572" MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" + cuSPARSE = "b26da814-b3bc-49ef-b0ee-c816305aa060" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "5acc6a41b3082920f79ca3c759acbcecf18a8d78" +git-tree-sha1 = "2700b235561b0335d5bef7097a111dc513b8655e" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.7.1" +version = "2.7.2" weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] @@ -2421,17 +2537,23 @@ git-tree-sha1 = "be1cf4eb0ac528d96f5115b4ed80c26a8d8ae621" uuid = "cae243ae-269e-4f55-b966-ac2d0dc13c15" version = "0.1.2" +[[deps.StarAlgebras]] +deps = ["LinearAlgebra", "MutableArithmetics", "SparseArrays"] +git-tree-sha1 = "235b1f9d287bbf34083b3d0829343a7942c0ad1c" +uuid = "0c0c59c1-dc5f-42e9-9a8b-b5dc384a6cd1" +version = "0.3.0" + [[deps.Static]] deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools", "SciMLPublic"] -git-tree-sha1 = "49440414711eddc7227724ae6e570c7d5559a086" +git-tree-sha1 = "bb072715f158b59ad8819ff80da5ffa90cce6ceb" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.3.1" +version = "1.4.0" [[deps.StaticArrayInterface]] deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "SciMLPublic", "Static"] -git-tree-sha1 = "aa1ea41b3d45ac449d10477f65e2b40e3197a0d2" +git-tree-sha1 = "2a635e15d5035c53b345077c947f31ff91744078" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.9.0" +version = "1.10.0" weakdeps = ["OffsetArrays", "StaticArrays"] [deps.StaticArrayInterface.extensions] @@ -2440,9 +2562,9 @@ weakdeps = ["OffsetArrays", "StaticArrays"] [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "0f529006004a8be48f1be25f3451186579392d47" +git-tree-sha1 = "246a8bb2e6667f832eea063c3a56aef96429a3db" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.17" +version = "1.9.18" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -2455,9 +2577,14 @@ uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" version = "1.4.4" [[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] +deps = ["LinearAlgebra"] +git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.10.0" +version = "1.11.1" +weakdeps = ["SparseArrays"] + + [deps.Statistics.extensions] + SparseArraysExt = ["SparseArrays"] [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -2484,9 +2611,9 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] [[deps.StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "83151ba8065a73f53ca2ae98bc7274d817aa30f2" +git-tree-sha1 = "5316097111523c9a970596a5b33cfea5f92e8581" uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.5.8" +version = "0.5.9" [[deps.StringEncodings]] deps = ["Libiconv_jll"] @@ -2496,15 +2623,15 @@ version = "0.3.7" [[deps.StringManipulation]] deps = ["PrecompileTools"] -git-tree-sha1 = "a3c1536470bf8c5e02096ad4853606d7c8f62721" +git-tree-sha1 = "d05693d339e37d6ab134c5ab53c29fce5ee5d7d5" uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.4.2" +version = "0.4.4" [[deps.StructArrays]] deps = ["ConstructionBase", "DataAPI", "Tables"] -git-tree-sha1 = "a2c37d815bf00575332b7bd0389f771cb7987214" +git-tree-sha1 = "ad8002667372439f2e3611cfd14097e03fa4bccd" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.7.2" +version = "0.7.3" [deps.StructArrays.extensions] StructArraysAdaptExt = "Adapt" @@ -2526,26 +2653,30 @@ git-tree-sha1 = "c581be48ae1cbf83e899b14c07a807e1787512cc" uuid = "53d494c1-5632-5724-8f4c-31dff12d585f" version = "0.3.1" +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" + [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse32_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "94fcd6e398534febe67795e7df45c76aa3c34851" +deps = ["Artifacts", "JLLWrappers", "Libdl", "libblastrampoline_jll"] +git-tree-sha1 = "1d43a4874b879f381b8a3a978f0ebe837cfd0922" uuid = "ca45d3f4-326b-53b0-9957-23b75aacb3f2" -version = "5.10.1+0" +version = "7.12.1+0" [[deps.SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "7.2.1+1" +version = "7.7.0+0" [[deps.Sundials]] -deps = ["Accessors", "ArrayInterface", "CEnum", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "LinearSolve", "Logging", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SparseArrays", "Sundials_jll", "SymbolicIndexingInterface"] -git-tree-sha1 = "2d27edb89b7c555a57b8f22bfde92d6828d11cee" +deps = ["Accessors", "ArrayInterface", "CEnum", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "LinearSolve", "Logging", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLLogging", "SparseArrays", "Sundials_jll", "SymbolicIndexingInterface"] +git-tree-sha1 = "4853f12fa4333ab235d939a6d38b368d35f2f492" uuid = "c3572dad-4567-51f8-b174-8c6c989267f4" -version = "5.1.0" +version = "6.1.0" [[deps.Sundials_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS32_jll", "SuiteSparse32_jll"] @@ -2570,10 +2701,10 @@ uuid = "19f23fe9-fdab-4a78-91af-e7b7767979c3" version = "1.1.0" [[deps.SymbolicUtils]] -deps = ["AbstractTrees", "ArrayInterface", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "EnumX", "ExproniconLite", "LinearAlgebra", "MacroTools", "Moshi", "MultivariatePolynomials", "MutableArithmetics", "NaNMath", "PrecompileTools", "ReadOnlyArrays", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "TaskLocalValues", "TermInterface", "WeakCacheSets"] -git-tree-sha1 = "d1c1a41cd8b7ed85559a87ac09b9b0925818aaaa" +deps = ["AbstractTrees", "ArrayInterface", "Combinatorics", "ConstructionBase", "DataStructures", "Dictionaries", "DocStringExtensions", "DynamicPolynomials", "EnumX", "ExproniconLite", "Graphs", "LinearAlgebra", "MacroTools", "Moshi", "MultivariatePolynomials", "MutableArithmetics", "NaNMath", "PrecompileTools", "ReadOnlyArrays", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "TaskLocalValues", "TermInterface", "WeakCacheSets"] +git-tree-sha1 = "a768eebd98bee75a02e4cb9891fd9d999673b62f" uuid = "d1185830-fcd6-423d-90d6-eec64667417b" -version = "4.18.5" +version = "4.27.0" [deps.SymbolicUtils.extensions] SymbolicUtilsChainRulesCoreExt = "ChainRulesCore" @@ -2589,9 +2720,9 @@ version = "4.18.5" [[deps.Symbolics]] deps = ["ADTypes", "AbstractPlutoDingetjes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "Moshi", "MultivariatePolynomials", "MutableArithmetics", "NaNMath", "PrecompileTools", "Preferences", "Primes", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLPublic", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] -git-tree-sha1 = "47a3af4b089c51470bff7a128754a5ba5ab59f6f" +git-tree-sha1 = "85bb4be51a7e90e531b1faa926b9497f436ca535" uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7" -version = "7.15.2" +version = "7.21.0" [deps.Symbolics.extensions] SymbolicsD3TreesExt = "D3Trees" @@ -2661,6 +2792,7 @@ version = "2.0.0" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" +version = "1.11.0" [[deps.ThreadingUtilities]] deps = ["ManualMemory"] @@ -2669,10 +2801,10 @@ uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" version = "0.5.5" [[deps.TiffImages]] -deps = ["ColorTypes", "DataStructures", "DocStringExtensions", "FileIO", "FixedPointNumbers", "IndirectArrays", "Inflate", "Mmap", "OffsetArrays", "PkgVersion", "PrecompileTools", "ProgressMeter", "SIMD", "UUIDs"] -git-tree-sha1 = "98b9352a24cb6a2066f9ababcc6802de9aed8ad8" +deps = ["CodecZstd", "ColorTypes", "DataStructures", "DocStringExtensions", "FileIO", "FixedPointNumbers", "IndirectArrays", "Inflate", "Mmap", "OffsetArrays", "PkgVersion", "PrecompileTools", "ProgressMeter", "SIMD", "UUIDs"] +git-tree-sha1 = "9ca5f1f2d42f80df4b8c9f6ab5a64f438bbd9976" uuid = "731e570b-9d59-4bfa-96dc-6df516fadf69" -version = "0.11.6" +version = "0.11.9" [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] @@ -2723,6 +2855,7 @@ version = "1.4.0" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +version = "1.11.0" [[deps.UnPack]] git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" @@ -2731,6 +2864,7 @@ version = "1.0.2" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +version = "1.11.0" [[deps.UnicodeFun]] deps = ["REPL"] @@ -2740,9 +2874,9 @@ version = "0.4.1" [[deps.UnicodePlots]] deps = ["ColorSchemes", "ColorTypes", "Contour", "Crayons", "Dates", "LinearAlgebra", "MarchingCubes", "NaNMath", "PrecompileTools", "Printf", "SparseArrays", "StaticArrays", "StatsBase"] -git-tree-sha1 = "0087c82cf98f2c2bb7df350c02b0b1fc6ae087d6" +git-tree-sha1 = "32c6b62c4a45c8be876c4916cffabf9b89c05ddd" uuid = "b8865327-cd53-5732-bb35-84acbb429228" -version = "3.8.1" +version = "3.8.3" [deps.UnicodePlots.extensions] FreeTypeExt = ["FileIO", "FreeType"] @@ -2826,9 +2960,9 @@ version = "2.13.9+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "9cce64c0fdd1960b597ba7ecda2950b5ed957438" +git-tree-sha1 = "b29c22e245d092b8b4e8d3c09ad7baa586d9f573" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.8.2+0" +version = "5.8.3+0" [[deps.Xorg_libX11_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] @@ -2854,6 +2988,12 @@ git-tree-sha1 = "1a4a26870bf1e5d26cd585e38038d399d7e65706" uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" version = "1.3.8+0" +[[deps.Xorg_libXfixes_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "75e00946e43621e09d431d9b95818ee751e6b2ef" +uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" +version = "6.0.2+0" + [[deps.Xorg_libXrender_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] git-tree-sha1 = "7ed9347888fac59a618302ee38216dd0379c480d" @@ -2862,9 +3002,9 @@ version = "0.9.12+0" [[deps.Xorg_libpciaccess_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "4909eb8f1cbf6bd4b1c30dd18b2ead9019ef2fad" +git-tree-sha1 = "58972370b81423fc546c56a60ed1a009450177c3" uuid = "a65dc6b1-eb27-53a1-bb3e-dea574b5389e" -version = "0.18.1+0" +version = "0.19.0+0" [[deps.Xorg_libxcb_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXau_jll", "Xorg_libXdmcp_jll"] @@ -2921,9 +3061,9 @@ version = "0.2.3+0" [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" +git-tree-sha1 = "850b06095ee71f0135d644ffd8a52850699581ed" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.13.1+0" +version = "3.13.3+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] @@ -2936,6 +3076,12 @@ deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" version = "5.11.0+0" +[[deps.libdrm_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libpciaccess_jll"] +git-tree-sha1 = "63aac0bcb0b582e11bad965cef4a689905456c03" +uuid = "8e53e030-5e6c-5a89-a30b-be5b7263a166" +version = "2.4.125+1" + [[deps.libfdk_aac_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "646634dd19587a56ee2f1199563ec056c5f228df" @@ -2944,9 +3090,9 @@ version = "2.0.4+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" +git-tree-sha1 = "e51150d5ab85cee6fc36726850f0e627ad2e4aba" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.55+0" +version = "1.6.58+0" [[deps.libsixel_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "libpng_jll"] @@ -2960,6 +3106,12 @@ git-tree-sha1 = "011b0a7331b41c25524b64dc42afc9683ee89026" uuid = "a9144af2-ca23-56d9-984f-0d03f7b5ccf8" version = "1.0.21+0" +[[deps.libva_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll", "Xorg_libXext_jll", "Xorg_libXfixes_jll", "libdrm_jll"] +git-tree-sha1 = "7dbf96baae3310fe2fa0df0ccbb3c6288d5816c9" +uuid = "9a156e7d-b971-5f62-b2c9-67348b8fb97c" +version = "2.23.0+0" + [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5" @@ -2972,10 +3124,16 @@ git-tree-sha1 = "4e4282c4d846e11dce56d74fa8040130b7a95cb3" uuid = "c5f90fcd-3b7e-5836-afba-fc50a0988cb2" version = "1.6.0+0" +[[deps.mpif_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "MPIABI_jll", "MPICH_jll", "MPIPreferences", "MPItrampoline_jll", "MicrosoftMPI_jll", "OpenMPI_jll", "TOML"] +git-tree-sha1 = "a8083ee0737c243c8f40a4ba86a0956997facb73" +uuid = "9aeb927a-4695-514f-a259-621a69f20ec0" +version = "0.1.7+0" + [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.52.0+1" +version = "1.59.0+0" [[deps.oneTBB_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] diff --git a/benchmarks/NonlinearProblem/Project.toml b/benchmarks/NonlinearProblem/Project.toml index 9279bd192..bcc75d72d 100644 --- a/benchmarks/NonlinearProblem/Project.toml +++ b/benchmarks/NonlinearProblem/Project.toml @@ -2,8 +2,8 @@ AlgebraicMultigrid = "1" BenchmarkTools = "1" CairoMakie = "0.15" -DiffEqBase = "6" -DiffEqDevTools = "2" +DiffEqBase = "7" +DiffEqDevTools = "3" DifferentiationInterface = "0.7" Enzyme = "0.13" IncompleteLU = "0.2" @@ -19,6 +19,7 @@ PolyesterForwardDiff = "0.1" PrettyTables = "3" RecursiveFactorization = "0.2" SciMLBenchmarks = "0.1" +SciMLLogging = "1, 2" Setfield = "1" SimpleNonlinearSolve = "2" SparseConnectivityTracer = "1" @@ -26,7 +27,7 @@ SparseMatrixColorings = "0.4" SpeedMapping = "0.4" StableRNGs = "1" StaticArrays = "1" -Sundials = "5" +Sundials = "6" Symbolics = "7" [deps] @@ -50,6 +51,7 @@ PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" PrettyTables = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" RecursiveFactorization = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" SciMLBenchmarks = "31c91b34-3c75-11e9-0341-95557aab0344" +SciMLLogging = "a6db7da4-7206-11f0-1eab-35f2a5dbe1d1" Setfield = "efcf1570-3423-57d1-acb7-fd33fddbac46" SimpleNonlinearSolve = "727e6d20-b764-4bd8-a329-72de5adea6c7" SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" diff --git a/benchmarks/NonlinearProblem/bruss.jmd b/benchmarks/NonlinearProblem/bruss.jmd index cdb7eb986..d0d00b808 100644 --- a/benchmarks/NonlinearProblem/bruss.jmd +++ b/benchmarks/NonlinearProblem/bruss.jmd @@ -11,6 +11,7 @@ Fetch required packages using NonlinearSolve, LinearAlgebra, SparseArrays, DiffEqDevTools, CairoMakie, Symbolics, BenchmarkTools, PolyesterForwardDiff, LinearSolve, Sundials, Enzyme, SparseConnectivityTracer, DifferentiationInterface, SparseMatrixColorings +using SciMLLogging import NLsolve, MINPACK, PETSc, RecursiveFactorization const RUS = RadiusUpdateSchemes; @@ -628,7 +629,7 @@ function generate_wpset(prob, solvers) return WorkPrecisionSet(prob, abstols, reltols, getfield.(successful_solvers, :solver); names = getfield.(successful_solvers, :name), numruns = 10, error_estimate = :l∞, - maxiters = 1000, verbose = true), + maxiters = 1000, verbose = SciMLLogging.Standard()), successful_solvers end ``` diff --git a/benchmarks/NonlinearProblem/nonlinear_battery_problem.jmd b/benchmarks/NonlinearProblem/nonlinear_battery_problem.jmd index 6058a89f3..ab5165ac9 100644 --- a/benchmarks/NonlinearProblem/nonlinear_battery_problem.jmd +++ b/benchmarks/NonlinearProblem/nonlinear_battery_problem.jmd @@ -24,6 +24,7 @@ Fetch required packages. using NonlinearSolve, LinearSolve, StaticArrays, Sundials, SpeedMapping, BenchmarkTools, LinearAlgebra, DiffEqDevTools, PolyesterForwardDiff, CairoMakie, RecursiveFactorization, Enzyme +using SciMLLogging import MINPACK, NLsolve, PETSc import LineSearches @@ -315,7 +316,7 @@ function generate_wpset(prob, solvers) return WorkPrecisionSet(prob.prob, abstols, reltols, getfield.(successful_solvers, :solver); names = getfield.(successful_solvers, :name), numruns = 50, error_estimate = :l∞, - maxiters = 10000, verbose = true), + maxiters = 10000, verbose = SciMLLogging.Standard()), successful_solvers end ``` diff --git a/benchmarks/Optimization/Manifest.toml b/benchmarks/Optimization/Manifest.toml index 6772381e5..5c9093481 100644 --- a/benchmarks/Optimization/Manifest.toml +++ b/benchmarks/Optimization/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.10" +julia_version = "1.11.9" manifest_format = "2.0" -project_hash = "d5c9ec241ca98b249dd85658bc09db9c80fcfc4e" +project_hash = "b5fe096441fb5f19e5912bfe19515f294b1e4fc8" [[deps.ADTypes]] -git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" +git-tree-sha1 = "bbc22a9a08a0ef6460041086d8a7b27940ed4ffd" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.21.0" +version = "1.22.0" weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] [deps.ADTypes.extensions] @@ -33,9 +33,9 @@ version = "0.4.5" [[deps.Accessors]] deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] -git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +git-tree-sha1 = "2eeb2c9bef11013efc6f8f97f32ee59b146b09fb" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.43" +version = "0.1.44" [deps.Accessors.extensions] AxisKeysExt = "AxisKeys" @@ -57,9 +57,9 @@ version = "0.1.43" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "35ea197a51ce46fcd01c4a44befce0578a1aaeca" +git-tree-sha1 = "0761717147821d696c9470a7a86364b2fbd22fd8" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.5.0" +version = "4.5.2" weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] @@ -74,7 +74,7 @@ version = "1.1.3" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.ArnoldiMethod]] deps = ["LinearAlgebra", "Random", "StaticArrays"] @@ -84,9 +84,9 @@ version = "0.4.0" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "78b3a7a536b4b0a747a0f296ea77091ca0a9f9a3" +git-tree-sha1 = "54f895554d05c83e3dd59f6a396671dae8999573" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.23.0" +version = "7.24.0" [deps.ArrayInterface.extensions] ArrayInterfaceAMDGPUExt = "AMDGPU" @@ -130,15 +130,17 @@ weakdeps = ["SparseArrays"] [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +version = "1.11.0" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.BenchmarkTools]] -deps = ["Compat", "JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"] -git-tree-sha1 = "7fecfb1123b8d0232218e2da0c213004ff15358d" +deps = ["Compat", "JSON", "Logging", "PrecompileTools", "Printf", "Profile", "Statistics", "UUIDs"] +git-tree-sha1 = "9670d3febc2b6da60a0ae57846ba74670290653f" uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" -version = "1.6.3" +version = "1.8.0" [[deps.Bijections]] git-tree-sha1 = "a2d308fcd4c2fb90e943cf9cd2fbfa9c32b69733" @@ -150,12 +152,6 @@ git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" version = "0.1.9" -[[deps.BitTwiddlingConvenienceFunctions]] -deps = ["Static"] -git-tree-sha1 = "f21cfd4950cb9f0587d5067e69405ad2acd27b87" -uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" -version = "0.1.6" - [[deps.BlackBoxOptim]] deps = ["Compat", "Distributed", "Distributions", "LinearAlgebra", "Printf", "Random", "Requires", "SpatialIndexing", "StatsBase"] git-tree-sha1 = "ff10af3e88099d442ca1d5c39a0e30a874524230" @@ -179,9 +175,9 @@ version = "1.9.3" [[deps.BracketingNonlinearSolve]] deps = ["CommonSolve", "ConcreteStructs", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "4999dff8efd76814f6662519b985aeda975a1924" +git-tree-sha1 = "7ad7171d693ae5552ac43862e7f6b61df4471c2b" uuid = "70df07ce-3d50-431d-a3e7-ca6ddb60ac1e" -version = "1.11.0" +version = "1.12.1" weakdeps = ["ChainRulesCore", "ForwardDiff"] [deps.BracketingNonlinearSolve.extensions] @@ -205,17 +201,11 @@ git-tree-sha1 = "6bf0985be2c5ea58305d2d04e336684f64fdc12a" uuid = "8d3b24bd-414e-49e0-94fb-163cc3a3e411" version = "0.2.6" -[[deps.CPUSummary]] -deps = ["CpuId", "IfElse", "PrecompileTools", "Preferences", "Static"] -git-tree-sha1 = "f3a21d7fc84ba618a779d1ed2fcca2e682865bab" -uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" -version = "0.2.7" - [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d0efe2c6fdcdaa1c161d206aa8b933788397ec71" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.5+1" +version = "1.18.6+0" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] @@ -225,20 +215,14 @@ version = "1.73.0" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" +git-tree-sha1 = "12177ad6b3cad7fd50c8b3825ce24a99ad61c18f" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.26.0" +version = "1.26.1" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] ChainRulesCoreSparseArraysExt = "SparseArrays" -[[deps.CloseOpenIntervals]] -deps = ["Static", "StaticArrayInterface"] -git-tree-sha1 = "05ba0d07cd4fd8b7a39541e31a7b0254704ea581" -uuid = "fb6a15b2-703c-40df-9091-08a04967cfa9" -version = "0.1.13" - [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" @@ -256,13 +240,11 @@ deps = ["FixedPointNumbers", "Random"] git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" version = "0.12.1" +weakdeps = ["StyledStrings"] [deps.ColorTypes.extensions] StyledStringsExt = "StyledStrings" - [deps.ColorTypes.weakdeps] - StyledStrings = "f489334b-da3d-4c2e-b8f0-e476e12c162b" - [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" @@ -382,12 +364,6 @@ git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" version = "0.6.3" -[[deps.CpuId]] -deps = ["Markdown"] -git-tree-sha1 = "fcbb72b032692610bfbdb15018ac16a36cf2e406" -uuid = "adafc99b-e345-5852-983c-f28acb93d879" -version = "0.3.1" - [[deps.DataAPI]] git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" @@ -407,6 +383,7 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" [[deps.Dbus_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] @@ -422,13 +399,14 @@ version = "1.9.1" [[deps.DiffEqBase]] deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "1719cd1b0a12e01775dc6db1577dd6ace1798fee" +git-tree-sha1 = "803d463050fae6121f5d15fd449e9538cb993ad9" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.210.1" +version = "6.214.1" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" DiffEqBaseChainRulesCoreExt = "ChainRulesCore" + DiffEqBaseDynamicQuantitiesExt = "DynamicQuantities" DiffEqBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] DiffEqBaseFlexUnitsExt = "FlexUnits" DiffEqBaseForwardDiffExt = ["ForwardDiff"] @@ -447,6 +425,7 @@ version = "6.210.1" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" + DynamicQuantities = "06fc5a27-2a28-4c7c-a15d-362465fb6821" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FlexUnits = "76e01b6b-c995-4ce6-8559-91e72a3d4e95" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" @@ -463,9 +442,9 @@ version = "6.210.1" [[deps.DiffEqCallbacks]] deps = ["ConcreteStructs", "DataStructures", "DiffEqBase", "DifferentiationInterface", "LinearAlgebra", "Markdown", "PrecompileTools", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "f17b863c2d5d496363fe36c8d8535cc6a33c9952" +git-tree-sha1 = "51f445c25b80c26c83c61520cde214adf8c05227" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "4.12.0" +version = "4.17.0" weakdeps = ["Functors"] [deps.DiffEqCallbacks.extensions] @@ -473,9 +452,9 @@ weakdeps = ["Functors"] [[deps.DiffEqNoiseProcess]] deps = ["CommonSolve", "DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "PoissonRandom", "QuadGK", "Random", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "b879ca516034469f28becdf01f85f56b45f518b9" +git-tree-sha1 = "5b5fe6eb9e994ff0de4e84fe149b03c706fd6403" uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" -version = "5.27.0" +version = "5.31.0" [deps.DiffEqNoiseProcess.extensions] DiffEqNoiseProcessOptimExt = "Optim" @@ -499,9 +478,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +git-tree-sha1 = "d0250552e42bf7cc36479fd38a6e30004c9e8c2b" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.7.16" +version = "0.7.17" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -511,7 +490,7 @@ version = "0.7.16" DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] - DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGPUArraysCoreExt = ["GPUArraysCore", "Adapt"] DifferentiationInterfaceGTPSAExt = "GTPSA" DifferentiationInterfaceMooncakeExt = "Mooncake" DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] @@ -525,6 +504,7 @@ version = "0.7.16" DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] [deps.DifferentiationInterface.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" @@ -561,12 +541,13 @@ weakdeps = ["ChainRulesCore", "EnzymeCore"] [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" +git-tree-sha1 = "e421c1938fafab0165b04dc1a9dbe2a26272952c" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.123" +version = "0.25.125" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -584,10 +565,10 @@ uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" version = "0.9.5" [[deps.DomainSets]] -deps = ["CompositeTypes", "IntervalSets", "LinearAlgebra", "StaticArrays"] -git-tree-sha1 = "c249d86e97a7e8398ce2068dce4c078a1c3464de" +deps = ["CompositeTypes", "FunctionMaps", "IntervalSets", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "4599e0cd684f3ff6cbbab73c77553a3d01a8d74d" uuid = "5b8099bc-c8ec-5219-889f-1d9e522a28bf" -version = "0.7.16" +version = "0.7.18" [deps.DomainSets.extensions] DomainSetsMakieExt = "Makie" @@ -610,9 +591,9 @@ version = "0.6.3" [[deps.DynamicQuantities]] deps = ["DispatchDoctor", "PrecompileTools", "TestItems", "Tricks"] -git-tree-sha1 = "e936fd0c351b282f0cb725705bff1f807f213567" +git-tree-sha1 = "7b098159d57dd03cb83fb5173cfba462d1b5e2de" uuid = "06fc5a27-2a28-4c7c-a15d-362465fb6821" -version = "1.12.0" +version = "1.12.3" [deps.DynamicQuantities.extensions] DynamicQuantitiesLinearAlgebraExt = "LinearAlgebra" @@ -636,9 +617,9 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.7" [[deps.EnzymeCore]] -git-tree-sha1 = "990991b8aa76d17693a98e3a915ac7aa49f08d1a" +git-tree-sha1 = "c6ee69ee502060982d12dbaaf3d8fcb4e835a0d1" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.8.18" +version = "0.8.20" weakdeps = ["Adapt", "ChainRulesCore"] [deps.EnzymeCore.extensions] @@ -665,9 +646,9 @@ version = "0.1.11" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "27af30de8b5445644e8ffe3bcb0d72049c089cf1" +git-tree-sha1 = "8f05e9a2e7c2e3eb524102bb2926c5743c07fbe1" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.7.3+0" +version = "2.8.0+0" [[deps.ExprTools]] git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" @@ -687,15 +668,23 @@ version = "0.4.5" [[deps.FFMPEG_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libva_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "66381d7059b5f3f6162f28831854008040a4e905" +git-tree-sha1 = "cac41ca6b2d399adfc95e51240566f8a60a80806" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "8.0.1+1" +version = "8.1.0+0" [[deps.FastBroadcast]] -deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "ab1b34570bcdf272899062e1a56285a53ecaae08" +deps = ["ArrayInterface", "LinearAlgebra"] +git-tree-sha1 = "7feeed2c9a7fa272189a5561bebf0c4ccaedb6ec" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.3.5" +version = "1.3.2" + + [deps.FastBroadcast.extensions] + FastBroadcastPolyesterExt = "Polyester" + FastBroadcastStaticExt = "Static" + + [deps.FastBroadcast.weakdeps] + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" + Static = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" @@ -727,6 +716,7 @@ version = "1.3.1" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" +version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] @@ -749,9 +739,9 @@ version = "1.8.0" [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "9340ca07ca27093ff68418b7558ca37b05f8aeb1" +git-tree-sha1 = "f7017a4f337f8df189fcce98e32b67a1298a2115" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.29.0" +version = "2.31.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -784,9 +774,9 @@ version = "1.3.7" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "eef4c86803f47dcb61e9b8790ecaa96956fdd8ae" +git-tree-sha1 = "cddeab6487248a39dae1a960fff0ac17b2a28888" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "1.3.2" +version = "1.3.3" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -794,9 +784,9 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "2c5512e11c791d1baed2049c5652441b28fc6a31" +git-tree-sha1 = "70329abc09b886fd2c5d94ad2d9527639c421e3e" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.4+0" +version = "2.14.3+1" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -804,6 +794,12 @@ git-tree-sha1 = "7a214fdac5ed5f59a22c2d9a885a16da1c74bbc7" uuid = "559328eb-81f9-559d-9380-de523a88c83c" version = "1.0.17+0" +[[deps.FunctionMaps]] +deps = ["CompositeTypes", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "31bd99a57edf98990d1c21486032963955450e8d" +uuid = "a85aefff-f8ca-4649-a888-c8e5398bc76c" +version = "0.1.2" + [[deps.FunctionWrappers]] git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" @@ -824,12 +820,13 @@ version = "0.5.2" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" +version = "1.11.0" [[deps.GLFW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] -git-tree-sha1 = "b7bfd56fa66616138dfe5237da4dc13bbd83c67f" +git-tree-sha1 = "9e0fb9e54594c47f278d75063980e43066e26e20" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.4.1+0" +version = "3.4.1+1" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -879,9 +876,9 @@ version = "3.7.0+0" [[deps.Git_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "dc34a3e3d96b4ed305b641e626dc14c12b7824b8" +git-tree-sha1 = "0dd4cfb426924210c8f42742751cbde74b27bfa3" uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb" -version = "2.53.0+0" +version = "2.54.0+0" [[deps.Glib_jll]] deps = ["Artifacts", "GettextRuntime_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] @@ -979,11 +976,12 @@ version = "2025.2.0+0" [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" +version = "1.11.0" [[deps.IntervalSets]] -git-tree-sha1 = "d966f85b3b7a8e49d034d27a189e9a4874b4391a" +git-tree-sha1 = "79d6bd28c8d9bccc2229784f1bd637689b256377" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.13" +version = "0.7.14" weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] @@ -1037,9 +1035,9 @@ version = "0.2.1" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "b6893345fd6658c8e475d40155789f4860ac3b21" +git-tree-sha1 = "c0c9b76f3520863909825cbecdef58cd63de705a" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.1.4+0" +version = "3.1.5+0" [[deps.JuliaFormatter]] deps = ["CommonMark", "Glob", "JuliaSyntax", "PrecompileTools", "TOML"] @@ -1054,17 +1052,18 @@ version = "0.4.10" [[deps.JumpProcesses]] deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "PoissonRandom", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "SymbolicIndexingInterface"] -git-tree-sha1 = "310fc6ddd46db8946f988b142fc2821f2f6456ff" +git-tree-sha1 = "2a8e5b9b90ef0da05f61904d0a39a7b1c0a83310" uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" -version = "9.23.1" +version = "9.28.0" [deps.JumpProcesses.extensions] JumpProcessesKernelAbstractionsExt = ["Adapt", "KernelAbstractions"] + JumpProcessesOrdinaryDiffEqCoreExt = "OrdinaryDiffEqCore" [deps.JumpProcesses.weakdeps] Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" - FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + OrdinaryDiffEqCore = "bbf590c4-e513-4bbe-9b18-05decba2e5d8" [[deps.Krylov]] deps = ["LinearAlgebra", "Printf", "SparseArrays"] @@ -1080,9 +1079,9 @@ version = "3.100.3+0" [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "aaafe88dccbd957a8d82f7d05be9b69172e0cee3" +git-tree-sha1 = "17b94ecafcfa45e8360a4fc9ca6b583b049e4e37" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "4.0.1+0" +version = "4.1.0+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1090,12 +1089,6 @@ git-tree-sha1 = "eb62a3deb62fc6d8822c0c4bef73e4412419c5d8" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" version = "18.1.8+0" -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "1c602b1127f4751facb671441ca72715cc95938a" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.3+0" - [[deps.LaTeXStrings]] git-tree-sha1 = "dda21b8cbd6a6c40d9d02a73230f9d70fed6918c" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" @@ -1119,15 +1112,10 @@ version = "0.16.10" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" tectonic_jll = "d7dd28d6-a5e6-559c-9131-7eb760cdacc5" -[[deps.LayoutPointers]] -deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "a9eaadb366f5493a5654e843864c13d8b107548c" -uuid = "10f19ff3-798f-405d-979b-55457f8fc047" -version = "0.1.17" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" +version = "1.11.0" [[deps.LeftChildRightSiblingTrees]] deps = ["AbstractTrees"] @@ -1143,16 +1131,17 @@ version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.4.0+0" +version = "8.6.0+0" [[deps.LibGit2]] deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +version = "1.11.0" [[deps.LibGit2_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.6.4+0" +version = "1.7.2+0" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] @@ -1161,6 +1150,7 @@ version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" +version = "1.11.0" [[deps.Libffi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1182,9 +1172,9 @@ version = "1.18.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "97bbca976196f2a1eb9607131cb108c69ec3f8a6" +git-tree-sha1 = "cc3ad4faf30015a3e8094c9b5b7f19e85bdf2386" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] @@ -1194,15 +1184,15 @@ version = "4.7.2+0" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d0205286d9eceadc518742860bf23f703779a3d6" +git-tree-sha1 = "d620582b1f0cbe2c72dd1d5bd195a9ce73370ab1" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.LineSearch]] deps = ["ADTypes", "CommonSolve", "ConcreteStructs", "FastClosures", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "SciMLBase", "SciMLJacobianOperators", "StaticArraysCore"] -git-tree-sha1 = "9f7253c0574b4b585c8909232adb890930da980a" +git-tree-sha1 = "fd58a77c92e7c8f1db25c9839127d52943a49349" uuid = "87fe0de2-c867-4266-b59a-2f0a94fc965b" -version = "0.1.6" +version = "0.1.9" weakdeps = ["LineSearches"] [deps.LineSearch.extensions] @@ -1217,12 +1207,13 @@ version = "7.5.1" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +version = "1.11.0" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "86b5b25ca3b97d248133d055463c31ebc4de2bbb" +deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] +git-tree-sha1 = "42b5cb44317e89ef75dd841c9c8eba9045bf9ff0" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "3.65.0" +version = "3.75.0" [deps.LinearSolve.extensions] LinearSolveAMDGPUExt = "AMDGPU" @@ -1233,7 +1224,9 @@ version = "3.65.0" LinearSolveCUDAExt = "CUDA" LinearSolveCUDSSExt = "CUDSS" LinearSolveCUSOLVERRFExt = ["CUSOLVERRF", "SparseArrays"] + LinearSolveChainRulesCoreExt = "ChainRulesCore" LinearSolveCliqueTreesExt = ["CliqueTrees", "SparseArrays"] + LinearSolveElementalExt = "Elemental" LinearSolveEnzymeExt = ["EnzymeCore", "SparseArrays"] LinearSolveFastAlmostBandedMatricesExt = "FastAlmostBandedMatrices" LinearSolveFastLapackInterfaceExt = "FastLapackInterface" @@ -1245,7 +1238,9 @@ version = "3.65.0" LinearSolveKrylovKitExt = "KrylovKit" LinearSolveMetalExt = "Metal" LinearSolveMooncakeExt = "Mooncake" + LinearSolvePETScCSRExt = ["PETSc", "SparseArrays", "SparseMatricesCSR"] LinearSolvePETScExt = ["PETSc", "SparseArrays"] + LinearSolvePETScMPIExt = ["PETSc", "PartitionedArrays", "SparseArrays", "SparseMatricesCSR"] LinearSolveParUExt = ["ParU_jll", "SparseArrays"] LinearSolvePardisoExt = ["Pardiso", "SparseArrays"] LinearSolveRecursiveFactorizationExt = "RecursiveFactorization" @@ -1260,7 +1255,9 @@ version = "3.65.0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" CUSOLVERRF = "a8cc9031-bad2-4722-94f5-40deabb4245c" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" + Elemental = "902c3f28-d1ec-5e7e-8399-a24c3845ee38" EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" FastLapackInterface = "29a986be-02c6-4525-aec4-84b980013641" @@ -1276,8 +1273,10 @@ version = "3.65.0" PETSc = "ace2c81b-2b5f-4b1e-a30d-d662738edfe0" ParU_jll = "9e0b026c-e8ce-559c-a2c4-6a3d5c955bc9" Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" + PartitionedArrays = "5a9dfac6-5c52-46f7-8278-5e2210713be9" RecursiveFactorization = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseMatricesCSR = "a0a7dd2c-ebf4-11e9-1f05-cf50bc540ca1" Sparspak = "e56a9233-b9d6-4f03-8d0f-1825330902ac" blis_jll = "6136c539-28a5-5bf0-87cc-b183200dce32" @@ -1299,6 +1298,7 @@ version = "0.3.29" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" +version = "1.11.0" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] @@ -1322,14 +1322,10 @@ git-tree-sha1 = "1e0228a030642014fe5cfe68c2c0a818f9e3f522" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" version = "0.5.16" -[[deps.ManualMemory]] -git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" -uuid = "d125e4d3-2237-4719-b19c-fa641b8a4667" -version = "0.1.8" - [[deps.Markdown]] deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +version = "1.11.0" [[deps.MaybeInplace]] deps = ["ArrayInterface", "LinearAlgebra", "MacroTools"] @@ -1350,7 +1346,7 @@ version = "1.1.10" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+1" +version = "2.28.6+0" [[deps.Measures]] git-tree-sha1 = "b513cedd20d9c914783d8ad83d08120702bf2c77" @@ -1365,6 +1361,7 @@ version = "1.2.0" [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" +version = "1.11.0" [[deps.ModelingToolkit]] deps = ["ADTypes", "AbstractTrees", "ArrayInterface", "BlockArrays", "ChainRulesCore", "Combinatorics", "CommonSolve", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "DiffRules", "DifferentiationInterface", "Distributed", "Distributions", "DocStringExtensions", "DomainSets", "DynamicQuantities", "EnumX", "ExprTools", "FindFirstFunctions", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "InteractiveUtils", "JuliaFormatter", "JumpProcesses", "Latexify", "Libdl", "LinearAlgebra", "MLStyle", "Moshi", "NaNMath", "NonlinearSolve", "OffsetArrays", "OrderedCollections", "PrecompileTools", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "URIs", "UnPack", "Unitful"] @@ -1396,7 +1393,7 @@ version = "0.3.7" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2023.1.10" +version = "2023.12.12" [[deps.MuladdMacro]] git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" @@ -1417,9 +1414,9 @@ version = "1.0.21" [[deps.MutableArithmetics]] deps = ["LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "22df8573f8e7c593ac205455ca088989d0a2c7a0" +git-tree-sha1 = "7c25249fc13a070f5ba433c50e21e22bb33c6fb0" uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" -version = "1.6.7" +version = "1.7.1" [[deps.NLSolversBase]] deps = ["ADTypes", "DifferentiationInterface", "Distributed", "FiniteDiff", "ForwardDiff"] @@ -1564,7 +1561,7 @@ version = "1.3.6+0" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.23+4" +version = "0.3.27+1" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] @@ -1573,9 +1570,9 @@ version = "0.8.5+0" [[deps.OpenSSH_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "OpenSSL_jll", "Zlib_jll"] -git-tree-sha1 = "301412a644646fdc0ad67d0a87487466b491e53d" +git-tree-sha1 = "57baa4b81a24c2910afbb6d853aa0685e4312bf7" uuid = "9bd350c2-7e96-507f-8002-3f2e150b4e1b" -version = "10.2.1+0" +version = "10.3.1+0" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "NetworkOptions", "OpenSSL_jll", "Sockets"] @@ -1585,9 +1582,9 @@ version = "1.6.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "c9cbeda6aceffc52d8a0017e71db27c7a7c0beaf" +git-tree-sha1 = "2ac022577e5eac7da040de17776d51bb770cd895" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.5.5+0" +version = "3.5.6+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -1719,15 +1716,15 @@ weakdeps = ["StatsBase"] [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "0662b083e11420952f2e62e17eddae7fc07d5997" +git-tree-sha1 = "58e5ed5e386e156bd93e86b305ebd21ac63d2d04" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" -version = "1.57.0+0" +version = "1.57.1+0" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "7d2f8f21da5db6a806faf7b9b292296da42b2810" +git-tree-sha1 = "5d5e0a78e971354b1c7bff0655d11fdc1b0e12c8" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.3" +version = "2.8.4" [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] @@ -1736,9 +1733,13 @@ uuid = "30392449-352a-5448-841d-b1acce4e97dc" version = "0.44.2+0" [[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.10.0" +version = "1.11.0" +weakdeps = ["REPL"] + + [deps.Pkg.extensions] + REPLExt = "REPL" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1778,18 +1779,6 @@ git-tree-sha1 = "67afbcbe9e184d6729a92a022147ed4cf972ca7b" uuid = "e409e4f3-bfea-5376-8464-e040bb5c01ab" version = "0.4.7" -[[deps.Polyester]] -deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "16bbc30b5ebea91e9ce1671adc03de2832cff552" -uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.19" - -[[deps.PolyesterWeave]] -deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] -git-tree-sha1 = "645bed98cd47f72f67316fd42fc47dee771aefcd" -uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad" -version = "0.2.2" - [[deps.PositiveFactorizations]] deps = ["LinearAlgebra"] git-tree-sha1 = "17275485f373e6673f7e7f97051f703ed5b15b20" @@ -1833,10 +1822,11 @@ version = "0.5.7" [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" +version = "1.11.0" [[deps.Profile]] -deps = ["Printf"] uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79" +version = "1.11.0" [[deps.ProgressLogging]] deps = ["Logging", "SHA", "UUIDs"] @@ -1887,9 +1877,9 @@ version = "6.10.2+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9da16da70037ba9d701192e27befedefb91ec284" +git-tree-sha1 = "5e8e8b0ab68215d7a2b14b9921a946fee794749e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.11.2" +version = "2.11.3" [deps.QuadGK.extensions] QuadGKEnzymeExt = "Enzyme" @@ -1898,12 +1888,14 @@ version = "2.11.2" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" [[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" +version = "1.11.0" [[deps.Random]] deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +version = "1.11.0" [[deps.RealDot]] deps = ["LinearAlgebra"] @@ -1925,12 +1917,13 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "LinearAlgebra", "PrecompileTools", "RecipesBase", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "18d2a6fd1ea9a8205cadb3a5704f8e51abdd748b" +git-tree-sha1 = "d0282d612f22dcad7b81cf487b746e63aa2a6709" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.48.0" +version = "3.54.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsFastBroadcastPolyesterExt = ["FastBroadcast", "Polyester"] RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsKernelAbstractionsExt = "KernelAbstractions" RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -1949,6 +1942,7 @@ version = "3.48.0" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" @@ -1994,15 +1988,15 @@ version = "0.5.1+0" [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "7257165d5477fd1025f7cb656019dcb6b0512c38" +git-tree-sha1 = "cfcdc949c4660544ab0fdeed169561cb22f835f4" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.17" +version = "0.5.18" [[deps.SCCNonlinearSolve]] deps = ["CommonSolve", "PrecompileTools", "Reexport", "SciMLBase", "SymbolicIndexingInterface"] -git-tree-sha1 = "b1fed39f2acdd4524c17b50ce6f4406be61b936d" +git-tree-sha1 = "521a298294a6fd11068df0148b4d57bb31550453" uuid = "9dfe8606-65a1-4bb3-9748-cb89d1561431" -version = "1.11.0" +version = "1.13.0" weakdeps = ["ChainRulesCore"] [deps.SCCNonlinearSolve.extensions] @@ -2012,16 +2006,11 @@ weakdeps = ["ChainRulesCore"] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" -[[deps.SIMDTypes]] -git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" -uuid = "94e857df-77ce-4151-89e5-788b33177be4" -version = "0.1.0" - [[deps.SciMLBase]] deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Moshi", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "8787e28326c99b0c9c706b51da525ad09d03c56f" +git-tree-sha1 = "bdbc7c751d36fdb104d437361950d884d489af85" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.149.0" +version = "2.153.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2070,9 +2059,9 @@ version = "0.1.3" [[deps.SciMLJacobianOperators]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DifferentiationInterface", "FastClosures", "LinearAlgebra", "SciMLBase", "SciMLOperators"] -git-tree-sha1 = "e96d5e96debf7f80a50d0b976a13dea556ccfd3a" +git-tree-sha1 = "7156a5b51cba1bea33a82a036939ead4131f92bc" uuid = "19f34311-ddf3-4b8b-af20-060888a46c0e" -version = "0.1.12" +version = "0.1.13" [[deps.SciMLLogging]] deps = ["Logging", "LoggingExtras", "Preferences"] @@ -2088,9 +2077,9 @@ version = "1.9.1" [[deps.SciMLOperators]] deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra"] -git-tree-sha1 = "794c760e6aafe9f40dcd7dd30526ea33f0adc8b7" +git-tree-sha1 = "0e34162268883db01c04f988895a80d0659071bb" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "1.15.1" +version = "1.17.0" weakdeps = ["SparseArrays", "StaticArraysCore"] [deps.SciMLOperators.extensions] @@ -2116,6 +2105,7 @@ version = "1.3.0" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" +version = "1.11.0" [[deps.Setfield]] deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] @@ -2126,6 +2116,7 @@ version = "1.1.2" [[deps.SharedArrays]] deps = ["Distributed", "Mmap", "Random", "Serialization"] uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" +version = "1.11.0" [[deps.Showoff]] deps = ["Dates", "Grisu"] @@ -2162,6 +2153,7 @@ version = "0.9.5" [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" +version = "1.11.0" [[deps.SortingAlgorithms]] deps = ["DataStructures"] @@ -2172,7 +2164,7 @@ version = "1.2.2" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -version = "1.10.0" +version = "1.11.0" [[deps.SparseConnectivityTracer]] deps = ["ADTypes", "DocStringExtensions", "FillArrays", "LinearAlgebra", "Random", "SparseArrays"] @@ -2202,22 +2194,25 @@ version = "0.1.2" [[deps.SparseMatrixColorings]] deps = ["ADTypes", "DocStringExtensions", "LinearAlgebra", "PrecompileTools", "Random", "SparseArrays"] -git-tree-sha1 = "7b2263c87aa890bf6d18ae05cedbe259754e3f34" +git-tree-sha1 = "f63d76c7b7c329cf11badd564fd8ba877b09c3fe" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.4.24" +version = "0.4.27" [deps.SparseMatrixColorings.extensions] - SparseMatrixColoringsCUDAExt = "CUDA" + SparseMatrixColoringsCUDAExt = ["CUDA", "cuSPARSE"] SparseMatrixColoringsCliqueTreesExt = "CliqueTrees" SparseMatrixColoringsColorsExt = "Colors" + SparseMatrixColoringsGPUArraysExt = "GPUArrays" SparseMatrixColoringsJuMPExt = ["JuMP", "MathOptInterface"] [deps.SparseMatrixColorings.weakdeps] CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" + GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" JuMP = "4076af6c-e467-56ae-b986-b466b2749572" MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" + cuSPARSE = "b26da814-b3bc-49ef-b0ee-c816305aa060" [[deps.SpatialIndexing]] git-tree-sha1 = "84efe17c77e1f2156a7a0d8a7c163c1e1c7bdaed" @@ -2226,9 +2221,9 @@ version = "0.1.6" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "5acc6a41b3082920f79ca3c759acbcecf18a8d78" +git-tree-sha1 = "2700b235561b0335d5bef7097a111dc513b8655e" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.7.1" +version = "2.7.2" weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] @@ -2248,20 +2243,9 @@ version = "0.1.2" [[deps.Static]] deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools", "SciMLPublic"] -git-tree-sha1 = "49440414711eddc7227724ae6e570c7d5559a086" +git-tree-sha1 = "bb072715f158b59ad8819ff80da5ffa90cce6ceb" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.3.1" - -[[deps.StaticArrayInterface]] -deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "SciMLPublic", "Static"] -git-tree-sha1 = "aa1ea41b3d45ac449d10477f65e2b40e3197a0d2" -uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.9.0" -weakdeps = ["OffsetArrays", "StaticArrays"] - - [deps.StaticArrayInterface.extensions] - StaticArrayInterfaceOffsetArraysExt = "OffsetArrays" - StaticArrayInterfaceStaticArraysExt = "StaticArrays" +version = "1.4.0" [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] @@ -2280,9 +2264,14 @@ uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" version = "1.4.4" [[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] +deps = ["LinearAlgebra"] +git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.10.0" +version = "1.11.1" +weakdeps = ["SparseArrays"] + + [deps.Statistics.extensions] + SparseArraysExt = ["SparseArrays"] [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -2307,12 +2296,6 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] StatsFunsChainRulesCoreExt = "ChainRulesCore" StatsFunsInverseFunctionsExt = "InverseFunctions" -[[deps.StrideArraysCore]] -deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "83151ba8065a73f53ca2ae98bc7274d817aa30f2" -uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.5.8" - [[deps.StringEncodings]] deps = ["Libiconv_jll"] git-tree-sha1 = "b765e46ba27ecf6b44faf70df40c57aa3a547dcb" @@ -2321,9 +2304,9 @@ version = "0.3.7" [[deps.StructArrays]] deps = ["ConstructionBase", "DataAPI", "Tables"] -git-tree-sha1 = "a2c37d815bf00575332b7bd0389f771cb7987214" +git-tree-sha1 = "ad8002667372439f2e3611cfd14097e03fa4bccd" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.7.2" +version = "0.7.3" [deps.StructArrays.extensions] StructArraysAdaptExt = "Adapt" @@ -2340,6 +2323,10 @@ version = "0.7.2" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" + [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" @@ -2347,7 +2334,7 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "7.2.1+1" +version = "7.7.0+0" [[deps.SymbolicIndexingInterface]] deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] @@ -2454,18 +2441,13 @@ version = "0.1.7" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" +version = "1.11.0" [[deps.TestItems]] git-tree-sha1 = "42fd9023fef18b9b78c8343a4e2f3813ffbcefcb" uuid = "1c621080-faea-4a02-84b6-bbd5e436b8fe" version = "1.0.0" -[[deps.ThreadingUtilities]] -deps = ["ManualMemory"] -git-tree-sha1 = "d969183d3d244b6c33796b5ed01ab97328f2db85" -uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" -version = "0.5.5" - [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] git-tree-sha1 = "3748bd928e68c7c346b52125cf41fff0de6937d0" @@ -2502,6 +2484,7 @@ version = "1.6.1" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +version = "1.11.0" [[deps.UnPack]] git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" @@ -2510,6 +2493,7 @@ version = "1.0.2" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +version = "1.11.0" [[deps.UnicodeFun]] deps = ["REPL"] @@ -2568,9 +2552,9 @@ version = "0.10.12" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "9cce64c0fdd1960b597ba7ecda2950b5ed957438" +git-tree-sha1 = "b29c22e245d092b8b4e8d3c09ad7baa586d9f573" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.8.2+0" +version = "5.8.3+0" [[deps.Xorg_libICE_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2646,9 +2630,9 @@ version = "0.9.12+0" [[deps.Xorg_libpciaccess_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "4909eb8f1cbf6bd4b1c30dd18b2ead9019ef2fad" +git-tree-sha1 = "58972370b81423fc546c56a60ed1a009450177c3" uuid = "a65dc6b1-eb27-53a1-bb3e-dea574b5389e" -version = "0.18.1+0" +version = "0.19.0+0" [[deps.Xorg_libxcb_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXau_jll", "Xorg_libXdmcp_jll"] @@ -2706,9 +2690,9 @@ version = "1.4.7+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "00af7ebdc563c9217ecc67776d1bbf037dbcebf4" +git-tree-sha1 = "429722587208f02b1cecbddcd20133df2f1ed796" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.44.0+0" +version = "2.47.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2783,9 +2767,9 @@ version = "0.61.1+0" [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" +git-tree-sha1 = "850b06095ee71f0135d644ffd8a52850699581ed" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.13.1+0" +version = "3.13.3+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] @@ -2830,9 +2814,9 @@ version = "1.28.1+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" +git-tree-sha1 = "e51150d5ab85cee6fc36726850f0e627ad2e4aba" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.55+0" +version = "1.6.58+0" [[deps.libsodium_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2861,7 +2845,7 @@ version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.52.0+1" +version = "1.59.0+0" [[deps.oneTBB_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] diff --git a/benchmarks/OptimizationCUTEst/Manifest.toml b/benchmarks/OptimizationCUTEst/Manifest.toml index 263ae7eec..eb69044c2 100644 --- a/benchmarks/OptimizationCUTEst/Manifest.toml +++ b/benchmarks/OptimizationCUTEst/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.10" +julia_version = "1.11.9" manifest_format = "2.0" project_hash = "afee597be672d570104ae655ed6deb56e231881d" [[deps.ADTypes]] -git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" +git-tree-sha1 = "bbc22a9a08a0ef6460041086d8a7b27940ed4ffd" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.21.0" +version = "1.22.0" weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] [deps.ADTypes.extensions] @@ -39,9 +39,9 @@ version = "0.4.5" [[deps.Accessors]] deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] -git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +git-tree-sha1 = "2eeb2c9bef11013efc6f8f97f32ee59b146b09fb" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.43" +version = "0.1.44" [deps.Accessors.extensions] AxisKeysExt = "AxisKeys" @@ -63,9 +63,9 @@ version = "0.1.43" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "35ea197a51ce46fcd01c4a44befce0578a1aaeca" +git-tree-sha1 = "0761717147821d696c9470a7a86364b2fbd22fd8" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.5.0" +version = "4.5.2" weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] @@ -80,7 +80,7 @@ version = "1.1.3" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.ArnoldiMethod]] deps = ["LinearAlgebra", "Random", "StaticArrays"] @@ -102,9 +102,9 @@ version = "3.5.2+0" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "78b3a7a536b4b0a747a0f296ea77091ca0a9f9a3" +git-tree-sha1 = "54f895554d05c83e3dd59f6a396671dae8999573" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.23.0" +version = "7.24.0" [deps.ArrayInterface.extensions] ArrayInterfaceAMDGPUExt = "AMDGPU" @@ -148,6 +148,7 @@ weakdeps = ["SparseArrays"] [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +version = "1.11.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] @@ -157,12 +158,7 @@ version = "1.1.0" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.BenchmarkTools]] -deps = ["Compat", "JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"] -git-tree-sha1 = "7fecfb1123b8d0232218e2da0c213004ff15358d" -uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" -version = "1.6.3" +version = "1.11.0" [[deps.Bijections]] git-tree-sha1 = "a2d308fcd4c2fb90e943cf9cd2fbfa9c32b69733" @@ -196,9 +192,9 @@ version = "1.9.3" [[deps.BracketingNonlinearSolve]] deps = ["CommonSolve", "ConcreteStructs", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "4999dff8efd76814f6662519b985aeda975a1924" +git-tree-sha1 = "7ad7171d693ae5552ac43862e7f6b61df4471c2b" uuid = "70df07ce-3d50-431d-a3e7-ca6ddb60ac1e" -version = "1.11.0" +version = "1.12.1" weakdeps = ["ChainRulesCore", "ForwardDiff"] [deps.BracketingNonlinearSolve.extensions] @@ -230,16 +226,16 @@ uuid = "bb5f6f25-f23d-57fd-8f90-3ef7bad1d825" version = "2.6.0+0" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d0efe2c6fdcdaa1c161d206aa8b933788397ec71" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.5+1" +version = "1.18.6+0" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" +git-tree-sha1 = "12177ad6b3cad7fd50c8b3825ce24a99ad61c18f" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.26.0" +version = "1.26.1" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] @@ -280,13 +276,11 @@ deps = ["FixedPointNumbers", "Random"] git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" version = "0.12.1" +weakdeps = ["StyledStrings"] [deps.ColorTypes.extensions] StyledStringsExt = "StyledStrings" - [deps.ColorTypes.weakdeps] - StyledStrings = "f489334b-da3d-4c2e-b8f0-e476e12c162b" - [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" @@ -424,15 +418,15 @@ version = "1.16.0" [[deps.DataFrames]] deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "d8928e9169ff76c6281f39a659f9bca3a573f24c" +git-tree-sha1 = "5fab31e2e01e70ad66e3e24c968c264d1cf166d6" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.8.1" +version = "1.8.2" [[deps.DataStructures]] deps = ["OrderedCollections"] -git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" +git-tree-sha1 = "e86f4a2805f7f19bec5129bc9150c38208e5dc23" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.19.3" +version = "0.19.4" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -442,6 +436,7 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" [[deps.Dbus_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] @@ -457,13 +452,14 @@ version = "1.9.1" [[deps.DiffEqBase]] deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "1719cd1b0a12e01775dc6db1577dd6ace1798fee" +git-tree-sha1 = "803d463050fae6121f5d15fd449e9538cb993ad9" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.210.1" +version = "6.214.1" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" DiffEqBaseChainRulesCoreExt = "ChainRulesCore" + DiffEqBaseDynamicQuantitiesExt = "DynamicQuantities" DiffEqBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] DiffEqBaseFlexUnitsExt = "FlexUnits" DiffEqBaseForwardDiffExt = ["ForwardDiff"] @@ -482,6 +478,7 @@ version = "6.210.1" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" + DynamicQuantities = "06fc5a27-2a28-4c7c-a15d-362465fb6821" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FlexUnits = "76e01b6b-c995-4ce6-8559-91e72a3d4e95" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" @@ -498,9 +495,9 @@ version = "6.210.1" [[deps.DiffEqCallbacks]] deps = ["ConcreteStructs", "DataStructures", "DiffEqBase", "DifferentiationInterface", "LinearAlgebra", "Markdown", "PrecompileTools", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "f17b863c2d5d496363fe36c8d8535cc6a33c9952" +git-tree-sha1 = "51f445c25b80c26c83c61520cde214adf8c05227" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "4.12.0" +version = "4.17.0" weakdeps = ["Functors"] [deps.DiffEqCallbacks.extensions] @@ -508,9 +505,9 @@ weakdeps = ["Functors"] [[deps.DiffEqNoiseProcess]] deps = ["CommonSolve", "DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "PoissonRandom", "QuadGK", "Random", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "b879ca516034469f28becdf01f85f56b45f518b9" +git-tree-sha1 = "5b5fe6eb9e994ff0de4e84fe149b03c706fd6403" uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" -version = "5.27.0" +version = "5.31.0" [deps.DiffEqNoiseProcess.extensions] DiffEqNoiseProcessOptimExt = "Optim" @@ -534,9 +531,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +git-tree-sha1 = "d0250552e42bf7cc36479fd38a6e30004c9e8c2b" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.7.16" +version = "0.7.17" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -546,7 +543,7 @@ version = "0.7.16" DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] - DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGPUArraysCoreExt = ["GPUArraysCore", "Adapt"] DifferentiationInterfaceGTPSAExt = "GTPSA" DifferentiationInterfaceMooncakeExt = "Mooncake" DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] @@ -560,6 +557,7 @@ version = "0.7.16" DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] [deps.DifferentiationInterface.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" @@ -607,12 +605,13 @@ weakdeps = ["ChainRulesCore", "SparseArrays"] [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" +git-tree-sha1 = "e421c1938fafab0165b04dc1a9dbe2a26272952c" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.123" +version = "0.25.125" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -630,10 +629,10 @@ uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" version = "0.9.5" [[deps.DomainSets]] -deps = ["CompositeTypes", "IntervalSets", "LinearAlgebra", "StaticArrays"] -git-tree-sha1 = "c249d86e97a7e8398ce2068dce4c078a1c3464de" +deps = ["CompositeTypes", "FunctionMaps", "IntervalSets", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "4599e0cd684f3ff6cbbab73c77553a3d01a8d74d" uuid = "5b8099bc-c8ec-5219-889f-1d9e522a28bf" -version = "0.7.16" +version = "0.7.18" [deps.DomainSets.extensions] DomainSetsMakieExt = "Makie" @@ -649,16 +648,16 @@ uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.6.0" [[deps.DynamicPolynomials]] -deps = ["Future", "LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Reexport", "Test"] -git-tree-sha1 = "3f50fa86c968fc1a9e006c07b6bc40ccbb1b704d" +deps = ["LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Reexport", "StarAlgebras", "Test"] +git-tree-sha1 = "5bfabc3827dfdd164359bad6800c115a81280c00" uuid = "7c1d4256-1411-5781-91ec-d7bc3513ac07" -version = "0.6.4" +version = "0.6.6" [[deps.DynamicQuantities]] deps = ["DispatchDoctor", "PrecompileTools", "TestItems", "Tricks"] -git-tree-sha1 = "e936fd0c351b282f0cb725705bff1f807f213567" +git-tree-sha1 = "7b098159d57dd03cb83fb5173cfba462d1b5e2de" uuid = "06fc5a27-2a28-4c7c-a15d-362465fb6821" -version = "1.12.0" +version = "1.12.3" [deps.DynamicQuantities.extensions] DynamicQuantitiesLinearAlgebraExt = "LinearAlgebra" @@ -682,9 +681,9 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.7" [[deps.EnzymeCore]] -git-tree-sha1 = "990991b8aa76d17693a98e3a915ac7aa49f08d1a" +git-tree-sha1 = "c6ee69ee502060982d12dbaaf3d8fcb4e835a0d1" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.8.18" +version = "0.8.20" weakdeps = ["Adapt", "ChainRulesCore"] [deps.EnzymeCore.extensions] @@ -705,9 +704,9 @@ version = "0.1.11" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "27af30de8b5445644e8ffe3bcb0d72049c089cf1" +git-tree-sha1 = "8f05e9a2e7c2e3eb524102bb2926c5743c07fbe1" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.7.3+0" +version = "2.8.0+0" [[deps.ExprTools]] git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" @@ -727,9 +726,9 @@ version = "0.4.5" [[deps.FFMPEG_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libva_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "66381d7059b5f3f6162f28831854008040a4e905" +git-tree-sha1 = "cac41ca6b2d399adfc95e51240566f8a60a80806" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "8.0.1+1" +version = "8.1.0+0" [[deps.FFTA]] deps = ["AbstractFFTs", "DocStringExtensions", "LinearAlgebra", "MuladdMacro", "Primes", "Random", "Reexport"] @@ -738,10 +737,15 @@ uuid = "b86e33f2-c0db-4aa1-a6e0-ab43e668529e" version = "0.3.1" [[deps.FastBroadcast]] -deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "ab1b34570bcdf272899062e1a56285a53ecaae08" +deps = ["ArrayInterface", "LinearAlgebra"] +git-tree-sha1 = "7feeed2c9a7fa272189a5561bebf0c4ccaedb6ec" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.3.5" +version = "1.3.2" +weakdeps = ["Polyester", "Static"] + + [deps.FastBroadcast.extensions] + FastBroadcastPolyesterExt = "Polyester" + FastBroadcastStaticExt = "Static" [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" @@ -773,6 +777,7 @@ version = "1.3.1" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" +version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] @@ -795,9 +800,9 @@ version = "1.8.0" [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "9340ca07ca27093ff68418b7558ca37b05f8aeb1" +git-tree-sha1 = "f7017a4f337f8df189fcce98e32b67a1298a2115" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.29.0" +version = "2.31.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -830,9 +835,9 @@ version = "1.3.7" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "eef4c86803f47dcb61e9b8790ecaa96956fdd8ae" +git-tree-sha1 = "cddeab6487248a39dae1a960fff0ac17b2a28888" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "1.3.2" +version = "1.3.3" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -840,9 +845,9 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "2c5512e11c791d1baed2049c5652441b28fc6a31" +git-tree-sha1 = "70329abc09b886fd2c5d94ad2d9527639c421e3e" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.4+0" +version = "2.14.3+1" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -850,6 +855,12 @@ git-tree-sha1 = "7a214fdac5ed5f59a22c2d9a885a16da1c74bbc7" uuid = "559328eb-81f9-559d-9380-de523a88c83c" version = "1.0.17+0" +[[deps.FunctionMaps]] +deps = ["CompositeTypes", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "31bd99a57edf98990d1c21486032963955450e8d" +uuid = "a85aefff-f8ca-4649-a888-c8e5398bc76c" +version = "0.1.2" + [[deps.FunctionWrappers]] git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" @@ -870,12 +881,13 @@ version = "0.5.2" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" +version = "1.11.0" [[deps.GLFW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] -git-tree-sha1 = "b7bfd56fa66616138dfe5237da4dc13bbd83c67f" +git-tree-sha1 = "9e0fb9e54594c47f278d75063980e43066e26e20" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.4.1+0" +version = "3.4.1+1" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -925,9 +937,9 @@ version = "3.7.0+0" [[deps.Git_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "dc34a3e3d96b4ed305b641e626dc14c12b7824b8" +git-tree-sha1 = "0dd4cfb426924210c8f42742751cbde74b27bfa3" uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb" -version = "2.53.0+0" +version = "2.54.0+0" [[deps.Glib_jll]] deps = ["Artifacts", "GettextRuntime_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] @@ -981,9 +993,9 @@ version = "0.5.3" [[deps.Hwloc_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "XML2_jll", "Xorg_libpciaccess_jll"] -git-tree-sha1 = "157e2e5838984449e44af851a52fe374d56b9ada" +git-tree-sha1 = "baaaebd42ed9ee1bd9173cfd56910e55a8622ee1" uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8" -version = "2.13.0+0" +version = "2.13.0+1" [[deps.HypergeometricFunctions]] deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] @@ -1012,9 +1024,9 @@ version = "0.1.1" [[deps.ImplicitDiscreteSolve]] deps = ["ConcreteStructs", "DiffEqBase", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "OrdinaryDiffEqCore", "Reexport", "SciMLBase", "SymbolicIndexingInterface"] -git-tree-sha1 = "80e108544e96389133758dd014b503d8df3cedb8" +git-tree-sha1 = "7cf86af21dd8c0e5538aa9536980cb83a6e5debd" uuid = "3263718b-31ed-49cf-8a0f-35a466e8af96" -version = "1.8.0" +version = "1.10.0" [[deps.Inflate]] git-tree-sha1 = "d1b1b796e47d94588b3757fe84fbf65a5ec4a80d" @@ -1048,6 +1060,7 @@ version = "2025.2.0+0" [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" +version = "1.11.0" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] @@ -1061,9 +1074,9 @@ weakdeps = ["ForwardDiff", "Unitful"] InterpolationsUnitfulExt = "Unitful" [[deps.IntervalSets]] -git-tree-sha1 = "d966f85b3b7a8e49d034d27a189e9a4874b4391a" +git-tree-sha1 = "79d6bd28c8d9bccc2229784f1bd637689b256377" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.13" +version = "0.7.14" weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] @@ -1088,9 +1101,9 @@ version = "1.3.1" [[deps.Ipopt]] deps = ["Ipopt_jll", "LinearAlgebra", "OpenBLAS32_jll", "PrecompileTools"] -git-tree-sha1 = "f1b9bf4b24fa1844f25fe570836f75cdb9f5245e" +git-tree-sha1 = "f284747bf301bdbbb0e455c48ba4ac852ccfb7d3" uuid = "b6b21f68-93f8-5de0-b562-5493be1d77c9" -version = "1.14.1" +version = "1.14.3" weakdeps = ["MathOptInterface"] [deps.Ipopt.extensions] @@ -1138,9 +1151,9 @@ version = "0.2.1" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "b6893345fd6658c8e475d40155789f4860ac3b21" +git-tree-sha1 = "c0c9b76f3520863909825cbecdef58cd63de705a" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.1.4+0" +version = "3.1.5+0" [[deps.JuliaFormatter]] deps = ["CommonMark", "Glob", "JuliaSyntax", "PrecompileTools", "TOML"] @@ -1155,17 +1168,18 @@ version = "0.4.10" [[deps.JumpProcesses]] deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "PoissonRandom", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "SymbolicIndexingInterface"] -git-tree-sha1 = "310fc6ddd46db8946f988b142fc2821f2f6456ff" +git-tree-sha1 = "2a8e5b9b90ef0da05f61904d0a39a7b1c0a83310" uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" -version = "9.23.1" +version = "9.28.0" [deps.JumpProcesses.extensions] JumpProcessesKernelAbstractionsExt = ["Adapt", "KernelAbstractions"] + JumpProcessesOrdinaryDiffEqCoreExt = "OrdinaryDiffEqCore" [deps.JumpProcesses.weakdeps] Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" - FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + OrdinaryDiffEqCore = "bbf590c4-e513-4bbe-9b18-05decba2e5d8" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTA", "Interpolations", "StatsBase"] @@ -1187,9 +1201,9 @@ version = "3.100.3+0" [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "aaafe88dccbd957a8d82f7d05be9b69172e0cee3" +git-tree-sha1 = "17b94ecafcfa45e8360a4fc9ca6b583b049e4e37" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "4.0.1+0" +version = "4.1.0+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1197,12 +1211,6 @@ git-tree-sha1 = "eb62a3deb62fc6d8822c0c4bef73e4412419c5d8" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" version = "18.1.8+0" -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "1c602b1127f4751facb671441ca72715cc95938a" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.3+0" - [[deps.LaTeXStrings]] git-tree-sha1 = "dda21b8cbd6a6c40d9d02a73230f9d70fed6918c" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" @@ -1235,6 +1243,7 @@ version = "0.1.17" [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" +version = "1.11.0" [[deps.LeftChildRightSiblingTrees]] deps = ["AbstractTrees"] @@ -1250,16 +1259,17 @@ version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.4.0+0" +version = "8.6.0+0" [[deps.LibGit2]] deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +version = "1.11.0" [[deps.LibGit2_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.6.4+0" +version = "1.7.2+0" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] @@ -1268,6 +1278,7 @@ version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" +version = "1.11.0" [[deps.Libffi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1289,9 +1300,9 @@ version = "1.18.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "97bbca976196f2a1eb9607131cb108c69ec3f8a6" +git-tree-sha1 = "cc3ad4faf30015a3e8094c9b5b7f19e85bdf2386" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] @@ -1301,15 +1312,15 @@ version = "4.7.2+0" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d0205286d9eceadc518742860bf23f703779a3d6" +git-tree-sha1 = "d620582b1f0cbe2c72dd1d5bd195a9ce73370ab1" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.LineSearch]] deps = ["ADTypes", "CommonSolve", "ConcreteStructs", "FastClosures", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "SciMLBase", "SciMLJacobianOperators", "StaticArraysCore"] -git-tree-sha1 = "9f7253c0574b4b585c8909232adb890930da980a" +git-tree-sha1 = "fd58a77c92e7c8f1db25c9839127d52943a49349" uuid = "87fe0de2-c867-4266-b59a-2f0a94fc965b" -version = "0.1.6" +version = "0.1.9" weakdeps = ["LineSearches"] [deps.LineSearch.extensions] @@ -1317,13 +1328,14 @@ weakdeps = ["LineSearches"] [[deps.LineSearches]] deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Printf"] -git-tree-sha1 = "738bdcacfef25b3a9e4a39c28613717a6b23751e" +git-tree-sha1 = "a666999510c794fe1d9dfa629ef33366f11103aa" uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.6.0" +version = "7.6.1" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +version = "1.11.0" [[deps.LinearOperators]] deps = ["FastClosures", "LinearAlgebra", "Printf", "SparseArrays", "TimerOutputs"] @@ -1348,10 +1360,10 @@ version = "2.13.0" Metal = "dde4c033-4e86-420c-a63e-0dd931031962" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "86b5b25ca3b97d248133d055463c31ebc4de2bbb" +deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] +git-tree-sha1 = "42b5cb44317e89ef75dd841c9c8eba9045bf9ff0" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "3.65.0" +version = "3.75.0" [deps.LinearSolve.extensions] LinearSolveAMDGPUExt = "AMDGPU" @@ -1362,7 +1374,9 @@ version = "3.65.0" LinearSolveCUDAExt = "CUDA" LinearSolveCUDSSExt = "CUDSS" LinearSolveCUSOLVERRFExt = ["CUSOLVERRF", "SparseArrays"] + LinearSolveChainRulesCoreExt = "ChainRulesCore" LinearSolveCliqueTreesExt = ["CliqueTrees", "SparseArrays"] + LinearSolveElementalExt = "Elemental" LinearSolveEnzymeExt = ["EnzymeCore", "SparseArrays"] LinearSolveFastAlmostBandedMatricesExt = "FastAlmostBandedMatrices" LinearSolveFastLapackInterfaceExt = "FastLapackInterface" @@ -1374,7 +1388,9 @@ version = "3.65.0" LinearSolveKrylovKitExt = "KrylovKit" LinearSolveMetalExt = "Metal" LinearSolveMooncakeExt = "Mooncake" + LinearSolvePETScCSRExt = ["PETSc", "SparseArrays", "SparseMatricesCSR"] LinearSolvePETScExt = ["PETSc", "SparseArrays"] + LinearSolvePETScMPIExt = ["PETSc", "PartitionedArrays", "SparseArrays", "SparseMatricesCSR"] LinearSolveParUExt = ["ParU_jll", "SparseArrays"] LinearSolvePardisoExt = ["Pardiso", "SparseArrays"] LinearSolveRecursiveFactorizationExt = "RecursiveFactorization" @@ -1389,7 +1405,9 @@ version = "3.65.0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" CUSOLVERRF = "a8cc9031-bad2-4722-94f5-40deabb4245c" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" + Elemental = "902c3f28-d1ec-5e7e-8399-a24c3845ee38" EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" FastLapackInterface = "29a986be-02c6-4525-aec4-84b980013641" @@ -1405,8 +1423,10 @@ version = "3.65.0" PETSc = "ace2c81b-2b5f-4b1e-a30d-d662738edfe0" ParU_jll = "9e0b026c-e8ce-559c-a2c4-6a3d5c955bc9" Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" + PartitionedArrays = "5a9dfac6-5c52-46f7-8278-5e2210713be9" RecursiveFactorization = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseMatricesCSR = "a0a7dd2c-ebf4-11e9-1f05-cf50bc540ca1" Sparspak = "e56a9233-b9d6-4f03-8d0f-1825330902ac" blis_jll = "6136c539-28a5-5bf0-87cc-b183200dce32" @@ -1428,6 +1448,7 @@ version = "0.3.29" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" +version = "1.11.0" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] @@ -1471,12 +1492,21 @@ version = "0.1.8" [[deps.Markdown]] deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +version = "1.11.0" [[deps.MathOptInterface]] -deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test"] -git-tree-sha1 = "7fb98657926ccb4de8f9bb96cda453700ca39a8b" +deps = ["CodecBzip2", "CodecZlib", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test"] +git-tree-sha1 = "73939c06e863f8d68322106fdc2464f3443b5e1a" uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" -version = "1.49.0" +version = "1.51.0" + + [deps.MathOptInterface.extensions] + MathOptInterfaceBenchmarkToolsExt = "BenchmarkTools" + MathOptInterfaceCliqueTreesExt = "CliqueTrees" + + [deps.MathOptInterface.weakdeps] + BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" [[deps.MaybeInplace]] deps = ["ArrayInterface", "LinearAlgebra", "MacroTools"] @@ -1497,7 +1527,7 @@ version = "1.1.10" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+1" +version = "2.28.6+0" [[deps.Measures]] git-tree-sha1 = "b513cedd20d9c914783d8ad83d08120702bf2c77" @@ -1512,6 +1542,7 @@ version = "1.2.0" [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" +version = "1.11.0" [[deps.ModelingToolkit]] deps = ["ADTypes", "AbstractTrees", "ArrayInterface", "BlockArrays", "ChainRulesCore", "Combinatorics", "CommonSolve", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "DiffRules", "DifferentiationInterface", "Distributed", "Distributions", "DocStringExtensions", "DomainSets", "DynamicQuantities", "EnumX", "ExprTools", "FillArrays", "FindFirstFunctions", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "ImplicitDiscreteSolve", "InteractiveUtils", "JuliaFormatter", "JumpProcesses", "Latexify", "Libdl", "LinearAlgebra", "MLStyle", "Moshi", "NaNMath", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "URIs", "UnPack", "Unitful"] @@ -1545,7 +1576,7 @@ version = "0.3.7" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2023.1.10" +version = "2023.12.12" [[deps.MuladdMacro]] git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" @@ -1553,10 +1584,10 @@ uuid = "46d2c3a1-f734-5fdb-9937-b9b9aeba4221" version = "0.2.4" [[deps.MultivariatePolynomials]] -deps = ["DataStructures", "LinearAlgebra", "MutableArithmetics"] -git-tree-sha1 = "139071bb741eeaa3ee7d4109f1299e9282882d79" +deps = ["DataStructures", "LinearAlgebra", "MutableArithmetics", "StarAlgebras"] +git-tree-sha1 = "4838893d9b035c2f6967c0d533350e1755b58a70" uuid = "102ac46a-7ee4-5c85-9060-abc95bfdeaa3" -version = "0.5.14" +version = "0.5.19" weakdeps = ["ChainRulesCore"] [deps.MultivariatePolynomials.extensions] @@ -1576,15 +1607,15 @@ version = "1.0.21" [[deps.MutableArithmetics]] deps = ["LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "22df8573f8e7c593ac205455ca088989d0a2c7a0" +git-tree-sha1 = "7c25249fc13a070f5ba433c50e21e22bb33c6fb0" uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" -version = "1.6.7" +version = "1.7.1" [[deps.NLPModels]] deps = ["FastClosures", "LinearAlgebra", "LinearOperators", "Printf", "SparseArrays"] -git-tree-sha1 = "7e1d908c240e8729efeb06717097ff7b46b348c0" +git-tree-sha1 = "5919b1be82ca6ebfc9754cb22ddfb54f56f1d9ac" uuid = "a4795742-8479-5a88-8948-cc11e1c8c1a6" -version = "0.21.11" +version = "0.21.12" [[deps.NLSolversBase]] deps = ["ADTypes", "DifferentiationInterface", "FiniteDiff", "LinearAlgebra"] @@ -1668,14 +1699,14 @@ version = "1.3.6+0" [[deps.OpenBLAS32_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6065c4cff8fee6c6770b277af45d5082baacdba1" +git-tree-sha1 = "dd0d9979377e43918a80486a562ddedcc6d9bdf3" uuid = "656ef2d0-ae68-5445-9ca0-591084a874a2" -version = "0.3.24+0" +version = "0.3.33+0" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.23+4" +version = "0.3.27+1" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] @@ -1684,9 +1715,9 @@ version = "0.8.5+0" [[deps.OpenSSH_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "OpenSSL_jll", "Zlib_jll"] -git-tree-sha1 = "301412a644646fdc0ad67d0a87487466b491e53d" +git-tree-sha1 = "57baa4b81a24c2910afbb6d853aa0685e4312bf7" uuid = "9bd350c2-7e96-507f-8002-3f2e150b4e1b" -version = "10.2.1+0" +version = "10.3.1+0" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "NetworkOptions", "OpenSSL_jll", "Sockets"] @@ -1696,9 +1727,9 @@ version = "1.6.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "c9cbeda6aceffc52d8a0017e71db27c7a7c0beaf" +git-tree-sha1 = "2ac022577e5eac7da040de17776d51bb770cd895" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.5.5+0" +version = "3.5.6+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -1800,10 +1831,10 @@ uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.8.1" [[deps.OrdinaryDiffEqCore]] -deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ConcreteStructs", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FillArrays", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "Polyester", "PrecompileTools", "Preferences", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Static", "StaticArrayInterface", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "fa1b29e844d9e118b1c8fbd778de6da0a1d25fa1" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ConcreteStructs", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "Polyester", "PrecompileTools", "Preferences", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Static", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "b85ff46f8ca4c8aa5aac6c22f99e3b54abba8b51" uuid = "bbf590c4-e513-4bbe-9b18-05decba2e5d8" -version = "3.18.0" +version = "3.28.0" [deps.OrdinaryDiffEqCore.extensions] OrdinaryDiffEqCoreMooncakeExt = "Mooncake" @@ -1830,15 +1861,15 @@ weakdeps = ["StatsBase"] [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "0662b083e11420952f2e62e17eddae7fc07d5997" +git-tree-sha1 = "58e5ed5e386e156bd93e86b305ebd21ac63d2d04" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" -version = "1.57.0+0" +version = "1.57.1+0" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "7d2f8f21da5db6a806faf7b9b292296da42b2810" +git-tree-sha1 = "5d5e0a78e971354b1c7bff0655d11fdc1b0e12c8" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.3" +version = "2.8.4" [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] @@ -1847,9 +1878,13 @@ uuid = "30392449-352a-5448-841d-b1acce4e97dc" version = "0.44.2+0" [[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.10.0" +version = "1.11.0" +weakdeps = ["REPL"] + + [deps.Pkg.extensions] + REPLExt = "REPL" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1943,9 +1978,9 @@ version = "1.5.2" [[deps.PrettyTables]] deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "REPL", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "211530a7dc76ab59087f4d4d1fc3f086fbe87594" +git-tree-sha1 = "624de6279ab7d94fc9f672f0068107eb6619732c" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "3.2.3" +version = "3.3.2" [deps.PrettyTables.extensions] PrettyTablesTypstryExt = "Typstry" @@ -1962,10 +1997,7 @@ version = "0.5.7" [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" - -[[deps.Profile]] -deps = ["Printf"] -uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79" +version = "1.11.0" [[deps.ProgressLogging]] deps = ["Logging", "SHA", "UUIDs"] @@ -2016,9 +2048,9 @@ version = "6.10.2+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9da16da70037ba9d701192e27befedefb91ec284" +git-tree-sha1 = "5e8e8b0ab68215d7a2b14b9921a946fee794749e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.11.2" +version = "2.11.3" [deps.QuadGK.extensions] QuadGKEnzymeExt = "Enzyme" @@ -2033,12 +2065,14 @@ uuid = "be4d8f0f-7fa4-5f49-b795-2f01399ab2dd" version = "0.5.13" [[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" +version = "1.11.0" [[deps.Random]] deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +version = "1.11.0" [[deps.Ratios]] deps = ["Requires"] @@ -2064,12 +2098,13 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "LinearAlgebra", "PrecompileTools", "RecipesBase", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "18d2a6fd1ea9a8205cadb3a5704f8e51abdd748b" +git-tree-sha1 = "d0282d612f22dcad7b81cf487b746e63aa2a6709" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.48.0" +version = "3.54.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsFastBroadcastPolyesterExt = ["FastBroadcast", "Polyester"] RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsKernelAbstractionsExt = "KernelAbstractions" RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -2088,6 +2123,7 @@ version = "3.48.0" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" @@ -2133,15 +2169,15 @@ version = "0.5.1+0" [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "7257165d5477fd1025f7cb656019dcb6b0512c38" +git-tree-sha1 = "cfcdc949c4660544ab0fdeed169561cb22f835f4" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.17" +version = "0.5.18" [[deps.SCCNonlinearSolve]] deps = ["CommonSolve", "PrecompileTools", "Reexport", "SciMLBase", "SymbolicIndexingInterface"] -git-tree-sha1 = "b1fed39f2acdd4524c17b50ce6f4406be61b936d" +git-tree-sha1 = "521a298294a6fd11068df0148b4d57bb31550453" uuid = "9dfe8606-65a1-4bb3-9748-cb89d1561431" -version = "1.11.0" +version = "1.13.0" weakdeps = ["ChainRulesCore"] [deps.SCCNonlinearSolve.extensions] @@ -2170,9 +2206,9 @@ version = "2025.9.18+0" [[deps.SciMLBase]] deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Moshi", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "8787e28326c99b0c9c706b51da525ad09d03c56f" +git-tree-sha1 = "bdbc7c751d36fdb104d437361950d884d489af85" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.149.0" +version = "2.153.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2221,9 +2257,9 @@ version = "0.1.3" [[deps.SciMLJacobianOperators]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DifferentiationInterface", "FastClosures", "LinearAlgebra", "SciMLBase", "SciMLOperators"] -git-tree-sha1 = "e96d5e96debf7f80a50d0b976a13dea556ccfd3a" +git-tree-sha1 = "7156a5b51cba1bea33a82a036939ead4131f92bc" uuid = "19f34311-ddf3-4b8b-af20-060888a46c0e" -version = "0.1.12" +version = "0.1.13" [[deps.SciMLLogging]] deps = ["Logging", "LoggingExtras", "Preferences"] @@ -2239,9 +2275,9 @@ version = "1.9.1" [[deps.SciMLOperators]] deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra"] -git-tree-sha1 = "794c760e6aafe9f40dcd7dd30526ea33f0adc8b7" +git-tree-sha1 = "0e34162268883db01c04f988895a80d0659071bb" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "1.15.1" +version = "1.17.0" weakdeps = ["SparseArrays", "StaticArraysCore"] [deps.SciMLOperators.extensions] @@ -2273,6 +2309,7 @@ version = "1.4.9" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" +version = "1.11.0" [[deps.Setfield]] deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] @@ -2283,6 +2320,7 @@ version = "1.1.2" [[deps.SharedArrays]] deps = ["Distributed", "Mmap", "Random", "Serialization"] uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" +version = "1.11.0" [[deps.Showoff]] deps = ["Dates", "Grisu"] @@ -2319,6 +2357,7 @@ version = "0.9.5" [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" +version = "1.11.0" [[deps.SortingAlgorithms]] deps = ["DataStructures"] @@ -2329,7 +2368,7 @@ version = "1.2.2" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -version = "1.10.0" +version = "1.11.0" [[deps.SparseConnectivityTracer]] deps = ["ADTypes", "DocStringExtensions", "FillArrays", "LinearAlgebra", "Random", "SparseArrays"] @@ -2353,28 +2392,31 @@ version = "1.2.1" [[deps.SparseMatrixColorings]] deps = ["ADTypes", "DocStringExtensions", "LinearAlgebra", "PrecompileTools", "Random", "SparseArrays"] -git-tree-sha1 = "7b2263c87aa890bf6d18ae05cedbe259754e3f34" +git-tree-sha1 = "f63d76c7b7c329cf11badd564fd8ba877b09c3fe" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.4.24" +version = "0.4.27" [deps.SparseMatrixColorings.extensions] - SparseMatrixColoringsCUDAExt = "CUDA" + SparseMatrixColoringsCUDAExt = ["CUDA", "cuSPARSE"] SparseMatrixColoringsCliqueTreesExt = "CliqueTrees" SparseMatrixColoringsColorsExt = "Colors" + SparseMatrixColoringsGPUArraysExt = "GPUArrays" SparseMatrixColoringsJuMPExt = ["JuMP", "MathOptInterface"] [deps.SparseMatrixColorings.weakdeps] CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" + GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" JuMP = "4076af6c-e467-56ae-b986-b466b2749572" MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" + cuSPARSE = "b26da814-b3bc-49ef-b0ee-c816305aa060" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "5acc6a41b3082920f79ca3c759acbcecf18a8d78" +git-tree-sha1 = "2700b235561b0335d5bef7097a111dc513b8655e" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.7.1" +version = "2.7.2" weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] @@ -2386,17 +2428,23 @@ git-tree-sha1 = "4f96c596b8c8258cc7d3b19797854d368f243ddc" uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" version = "1.0.4" +[[deps.StarAlgebras]] +deps = ["LinearAlgebra", "MutableArithmetics", "SparseArrays"] +git-tree-sha1 = "235b1f9d287bbf34083b3d0829343a7942c0ad1c" +uuid = "0c0c59c1-dc5f-42e9-9a8b-b5dc384a6cd1" +version = "0.3.0" + [[deps.Static]] deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools", "SciMLPublic"] -git-tree-sha1 = "49440414711eddc7227724ae6e570c7d5559a086" +git-tree-sha1 = "bb072715f158b59ad8819ff80da5ffa90cce6ceb" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.3.1" +version = "1.4.0" [[deps.StaticArrayInterface]] deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "SciMLPublic", "Static"] -git-tree-sha1 = "aa1ea41b3d45ac449d10477f65e2b40e3197a0d2" +git-tree-sha1 = "2a635e15d5035c53b345077c947f31ff91744078" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.9.0" +version = "1.10.0" weakdeps = ["OffsetArrays", "StaticArrays"] [deps.StaticArrayInterface.extensions] @@ -2420,9 +2468,14 @@ uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" version = "1.4.4" [[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] +deps = ["LinearAlgebra"] +git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.10.0" +version = "1.11.1" +weakdeps = ["SparseArrays"] + + [deps.Statistics.extensions] + SparseArraysExt = ["SparseArrays"] [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -2455,9 +2508,9 @@ version = "0.15.8" [[deps.StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "83151ba8065a73f53ca2ae98bc7274d817aa30f2" +git-tree-sha1 = "5316097111523c9a970596a5b33cfea5f92e8581" uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.5.8" +version = "0.5.9" [[deps.StringEncodings]] deps = ["Libiconv_jll"] @@ -2471,6 +2524,10 @@ git-tree-sha1 = "d05693d339e37d6ab134c5ab53c29fce5ee5d7d5" uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" version = "0.4.4" +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" + [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" @@ -2478,7 +2535,7 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "7.2.1+1" +version = "7.7.0+0" [[deps.SymbolicIndexingInterface]] deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] @@ -2589,6 +2646,7 @@ version = "0.1.7" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" +version = "1.11.0" [[deps.TestItems]] git-tree-sha1 = "42fd9023fef18b9b78c8343a4e2f3813ffbcefcb" @@ -2637,6 +2695,7 @@ version = "1.6.1" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +version = "1.11.0" [[deps.UnPack]] git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" @@ -2645,6 +2704,7 @@ version = "1.0.2" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +version = "1.11.0" [[deps.UnicodeFun]] deps = ["REPL"] @@ -2721,9 +2781,9 @@ version = "2.13.9+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "9cce64c0fdd1960b597ba7ecda2950b5ed957438" +git-tree-sha1 = "b29c22e245d092b8b4e8d3c09ad7baa586d9f573" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.8.2+0" +version = "5.8.3+0" [[deps.Xorg_libICE_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2799,9 +2859,9 @@ version = "0.9.12+0" [[deps.Xorg_libpciaccess_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "4909eb8f1cbf6bd4b1c30dd18b2ead9019ef2fad" +git-tree-sha1 = "58972370b81423fc546c56a60ed1a009450177c3" uuid = "a65dc6b1-eb27-53a1-bb3e-dea574b5389e" -version = "0.18.1+0" +version = "0.19.0+0" [[deps.Xorg_libxcb_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXau_jll", "Xorg_libXdmcp_jll"] @@ -2859,9 +2919,9 @@ version = "1.4.7+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "00af7ebdc563c9217ecc67776d1bbf037dbcebf4" +git-tree-sha1 = "429722587208f02b1cecbddcd20133df2f1ed796" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.44.0+0" +version = "2.47.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2912,9 +2972,9 @@ version = "0.61.1+0" [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" +git-tree-sha1 = "850b06095ee71f0135d644ffd8a52850699581ed" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.13.1+0" +version = "3.13.3+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] @@ -2959,9 +3019,9 @@ version = "1.28.1+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" +git-tree-sha1 = "e51150d5ab85cee6fc36726850f0e627ad2e4aba" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.55+0" +version = "1.6.58+0" [[deps.libsodium_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2990,7 +3050,7 @@ version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.52.0+1" +version = "1.59.0+0" [[deps.oneTBB_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] diff --git a/benchmarks/OptimizationFrameworks/Manifest.toml b/benchmarks/OptimizationFrameworks/Manifest.toml index 64969bdc0..53fc8fb4b 100644 --- a/benchmarks/OptimizationFrameworks/Manifest.toml +++ b/benchmarks/OptimizationFrameworks/Manifest.toml @@ -1,8 +1,8 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.11" +julia_version = "1.11.9" manifest_format = "2.0" -project_hash = "7f730fe663e3dd7e97981af63eb4557d088f8d86" +project_hash = "8d8ccd170474329037538030e86a21374d45898c" [[deps.ADNLPModels]] deps = ["ADTypes", "ForwardDiff", "LinearAlgebra", "NLPModels", "Requires", "ReverseDiff", "SparseArrays", "SparseConnectivityTracer", "SparseMatrixColorings"] @@ -11,9 +11,9 @@ uuid = "54578032-b7ea-4c30-94aa-7cbd1cce6c9a" version = "0.8.13" [[deps.ADTypes]] -git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" +git-tree-sha1 = "bbc22a9a08a0ef6460041086d8a7b27940ed4ffd" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.21.0" +version = "1.22.0" weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] [deps.ADTypes.extensions] @@ -64,9 +64,9 @@ version = "0.1.44" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "35ea197a51ce46fcd01c4a44befce0578a1aaeca" +git-tree-sha1 = "0761717147821d696c9470a7a86364b2fbd22fd8" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.5.0" +version = "4.5.2" weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] @@ -81,7 +81,7 @@ version = "1.1.3" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.ArnoldiMethod]] deps = ["LinearAlgebra", "Random", "StaticArrays"] @@ -91,9 +91,9 @@ version = "0.4.0" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "78b3a7a536b4b0a747a0f296ea77091ca0a9f9a3" +git-tree-sha1 = "54f895554d05c83e3dd59f6a396671dae8999573" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.23.0" +version = "7.24.0" [deps.ArrayInterface.extensions] ArrayInterfaceAMDGPUExt = "AMDGPU" @@ -137,6 +137,7 @@ weakdeps = ["SparseArrays"] [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +version = "1.11.0" [[deps.BandedMatrices]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"] @@ -154,12 +155,13 @@ version = "1.11.0" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.BenchmarkTools]] -deps = ["Compat", "JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"] -git-tree-sha1 = "7fecfb1123b8d0232218e2da0c213004ff15358d" +deps = ["Compat", "JSON", "Logging", "PrecompileTools", "Printf", "Profile", "Statistics", "UUIDs"] +git-tree-sha1 = "9670d3febc2b6da60a0ae57846ba74670290653f" uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" -version = "1.6.3" +version = "1.8.0" [[deps.Bijections]] git-tree-sha1 = "a2d308fcd4c2fb90e943cf9cd2fbfa9c32b69733" @@ -181,12 +183,6 @@ git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" version = "0.1.9" -[[deps.BitTwiddlingConvenienceFunctions]] -deps = ["Static"] -git-tree-sha1 = "f21cfd4950cb9f0587d5067e69405ad2acd27b87" -uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" -version = "0.1.6" - [[deps.BlockArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] git-tree-sha1 = "0f606a9894e2bcda541ceb82a91a13c5d450ed97" @@ -200,9 +196,9 @@ weakdeps = ["Adapt", "BandedMatrices"] [[deps.BracketingNonlinearSolve]] deps = ["CommonSolve", "ConcreteStructs", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "d9b66401c1fa982c7ca984d0566af5a9b3551420" +git-tree-sha1 = "7ad7171d693ae5552ac43862e7f6b61df4471c2b" uuid = "70df07ce-3d50-431d-a3e7-ca6ddb60ac1e" -version = "1.12.0" +version = "1.12.1" weakdeps = ["ChainRulesCore", "ForwardDiff"] [deps.BracketingNonlinearSolve.extensions] @@ -220,34 +216,22 @@ git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" version = "0.5.0" -[[deps.CPUSummary]] -deps = ["CpuId", "IfElse", "PrecompileTools", "Preferences", "Static"] -git-tree-sha1 = "f3a21d7fc84ba618a779d1ed2fcca2e682865bab" -uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" -version = "0.2.7" - [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d0efe2c6fdcdaa1c161d206aa8b933788397ec71" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.5+1" +version = "1.18.6+0" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" +git-tree-sha1 = "12177ad6b3cad7fd50c8b3825ce24a99ad61c18f" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.26.0" +version = "1.26.1" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] ChainRulesCoreSparseArraysExt = "SparseArrays" -[[deps.CloseOpenIntervals]] -deps = ["Static", "StaticArrayInterface"] -git-tree-sha1 = "05ba0d07cd4fd8b7a39541e31a7b0254704ea581" -uuid = "fb6a15b2-703c-40df-9091-08a04967cfa9" -version = "0.1.13" - [[deps.CodecBzip2]] deps = ["Bzip2_jll", "TranscodingStreams"] git-tree-sha1 = "84990fa864b7f2b4901901ca12736e45ee79068c" @@ -271,13 +255,11 @@ deps = ["FixedPointNumbers", "Random"] git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" version = "0.12.1" +weakdeps = ["StyledStrings"] [deps.ColorTypes.extensions] StyledStringsExt = "StyledStrings" - [deps.ColorTypes.weakdeps] - StyledStrings = "f489334b-da3d-4c2e-b8f0-e476e12c162b" - [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" @@ -383,12 +365,6 @@ git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" version = "0.6.3" -[[deps.CpuId]] -deps = ["Markdown"] -git-tree-sha1 = "fcbb72b032692610bfbdb15018ac16a36cf2e406" -uuid = "adafc99b-e345-5852-983c-f28acb93d879" -version = "0.3.1" - [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" @@ -401,15 +377,15 @@ version = "1.16.0" [[deps.DataFrames]] deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "d8928e9169ff76c6281f39a659f9bca3a573f24c" +git-tree-sha1 = "5fab31e2e01e70ad66e3e24c968c264d1cf166d6" uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.8.1" +version = "1.8.2" [[deps.DataStructures]] deps = ["OrderedCollections"] -git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" +git-tree-sha1 = "e86f4a2805f7f19bec5129bc9150c38208e5dc23" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.19.3" +version = "0.19.4" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -419,6 +395,7 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" [[deps.Dbus_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] @@ -439,10 +416,10 @@ uuid = "85a47980-9c8c-11e8-2b9f-f7ca1fa99fb4" version = "0.4.6" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "96e0d3006aac4a322691de81f0baedd38b62a0c4" +deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "2d7ca58e6ce2d1f7a435773d73d111741e283070" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.211.0" +version = "7.1.0" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" @@ -483,9 +460,9 @@ version = "6.211.0" [[deps.DiffEqCallbacks]] deps = ["ConcreteStructs", "DataStructures", "DiffEqBase", "DifferentiationInterface", "LinearAlgebra", "Markdown", "PrecompileTools", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "f17b863c2d5d496363fe36c8d8535cc6a33c9952" +git-tree-sha1 = "51f445c25b80c26c83c61520cde214adf8c05227" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "4.12.0" +version = "4.17.0" [deps.DiffEqCallbacks.extensions] DiffEqCallbacksFunctorsExt = "Functors" @@ -507,9 +484,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +git-tree-sha1 = "d0250552e42bf7cc36479fd38a6e30004c9e8c2b" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.7.16" +version = "0.7.17" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -519,7 +496,7 @@ version = "0.7.16" DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] - DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGPUArraysCoreExt = ["GPUArraysCore", "Adapt"] DifferentiationInterfaceGTPSAExt = "GTPSA" DifferentiationInterfaceMooncakeExt = "Mooncake" DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] @@ -533,6 +510,7 @@ version = "0.7.16" DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] [deps.DifferentiationInterface.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" @@ -569,6 +547,7 @@ weakdeps = ["ChainRulesCore", "SparseArrays"] [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.DocStringExtensions]] git-tree-sha1 = "7442a5dfe1ebb773c29cc2962a8980f47221d76c" @@ -576,10 +555,10 @@ uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" version = "0.9.5" [[deps.DomainSets]] -deps = ["CompositeTypes", "IntervalSets", "LinearAlgebra", "StaticArrays"] -git-tree-sha1 = "c249d86e97a7e8398ce2068dce4c078a1c3464de" +deps = ["CompositeTypes", "FunctionMaps", "IntervalSets", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "4599e0cd684f3ff6cbbab73c77553a3d01a8d74d" uuid = "5b8099bc-c8ec-5219-889f-1d9e522a28bf" -version = "0.7.16" +version = "0.7.18" [deps.DomainSets.extensions] DomainSetsMakieExt = "Makie" @@ -595,10 +574,10 @@ uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.6.0" [[deps.DynamicPolynomials]] -deps = ["Future", "LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Reexport", "Test"] -git-tree-sha1 = "3f50fa86c968fc1a9e006c07b6bc40ccbb1b704d" +deps = ["LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Reexport", "StarAlgebras", "Test"] +git-tree-sha1 = "5bfabc3827dfdd164359bad6800c115a81280c00" uuid = "7c1d4256-1411-5781-91ec-d7bc3513ac07" -version = "0.6.4" +version = "0.6.6" [[deps.EnumX]] git-tree-sha1 = "c49898e8438c828577f04b92fc9368c388ac783c" @@ -607,9 +586,9 @@ version = "1.0.7" [[deps.Enzyme]] deps = ["CEnum", "EnzymeCore", "Enzyme_jll", "GPUCompiler", "InteractiveUtils", "LLVM", "Libdl", "LinearAlgebra", "ObjectFile", "PrecompileTools", "Preferences", "Printf", "Random", "SparseArrays"] -git-tree-sha1 = "3b8ff73a9885aaea237bc262bd5fc798b5fd866f" +git-tree-sha1 = "78704dd8d84c93a7f2ac5af0bbb95d26763ec9b9" uuid = "7da242da-08ed-463a-9acd-ee780be4f1d9" -version = "0.13.134" +version = "0.13.140" [deps.Enzyme.extensions] EnzymeBFloat16sExt = "BFloat16s" @@ -629,9 +608,9 @@ version = "0.13.134" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" [[deps.EnzymeCore]] -git-tree-sha1 = "990991b8aa76d17693a98e3a915ac7aa49f08d1a" +git-tree-sha1 = "c6ee69ee502060982d12dbaaf3d8fcb4e835a0d1" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.8.18" +version = "0.8.20" weakdeps = ["Adapt", "ChainRulesCore"] [deps.EnzymeCore.extensions] @@ -640,9 +619,9 @@ weakdeps = ["Adapt", "ChainRulesCore"] [[deps.Enzyme_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "4c22000e08aaa862526d9a41cfb7003e4002e653" +git-tree-sha1 = "d3ad8f5eca369ac8803ff7db660028d47debc75d" uuid = "7cc45869-7501-5eee-bdea-0790c847d4ef" -version = "0.0.256+0" +version = "0.0.258+0" [[deps.EpollShim_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -658,9 +637,9 @@ version = "0.1.11" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "27af30de8b5445644e8ffe3bcb0d72049c089cf1" +git-tree-sha1 = "8f05e9a2e7c2e3eb524102bb2926c5743c07fbe1" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.7.3+0" +version = "2.8.0+0" [[deps.ExprTools]] git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" @@ -680,15 +659,23 @@ version = "0.4.5" [[deps.FFMPEG_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libva_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "66381d7059b5f3f6162f28831854008040a4e905" +git-tree-sha1 = "cac41ca6b2d399adfc95e51240566f8a60a80806" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "8.0.1+1" +version = "8.1.0+0" [[deps.FastBroadcast]] -deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "ab1b34570bcdf272899062e1a56285a53ecaae08" +deps = ["ArrayInterface", "LinearAlgebra"] +git-tree-sha1 = "7feeed2c9a7fa272189a5561bebf0c4ccaedb6ec" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.3.5" +version = "1.3.2" + + [deps.FastBroadcast.extensions] + FastBroadcastPolyesterExt = "Polyester" + FastBroadcastStaticExt = "Static" + + [deps.FastBroadcast.weakdeps] + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" + Static = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" @@ -720,6 +707,7 @@ version = "1.3.1" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" +version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] @@ -742,9 +730,9 @@ version = "1.8.0" [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "9340ca07ca27093ff68418b7558ca37b05f8aeb1" +git-tree-sha1 = "f7017a4f337f8df189fcce98e32b67a1298a2115" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.29.0" +version = "2.31.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -797,26 +785,42 @@ git-tree-sha1 = "7a214fdac5ed5f59a22c2d9a885a16da1c74bbc7" uuid = "559328eb-81f9-559d-9380-de523a88c83c" version = "1.0.17+0" +[[deps.FunctionMaps]] +deps = ["CompositeTypes", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "31bd99a57edf98990d1c21486032963955450e8d" +uuid = "a85aefff-f8ca-4649-a888-c8e5398bc76c" +version = "0.1.2" + [[deps.FunctionWrappers]] git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" version = "1.1.3" [[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +deps = ["FunctionWrappers", "PrecompileTools", "TruncatedStacktraces"] +git-tree-sha1 = "c1b0c3a166a2a393257aa888787ca817532e14ce" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" +version = "1.8.0" + + [deps.FunctionWrappersWrappers.extensions] + FunctionWrappersWrappersEnzymeExt = ["Enzyme", "EnzymeCore"] + FunctionWrappersWrappersMooncakeExt = "Mooncake" + + [deps.FunctionWrappersWrappers.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" +version = "1.11.0" [[deps.GLFW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] -git-tree-sha1 = "b7bfd56fa66616138dfe5237da4dc13bbd83c67f" +git-tree-sha1 = "9e0fb9e54594c47f278d75063980e43066e26e20" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.4.1+0" +version = "3.4.1+1" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -826,9 +830,9 @@ version = "0.2.0" [[deps.GPUCompiler]] deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "PrecompileTools", "Preferences", "Scratch", "Serialization", "TOML", "Tracy", "UUIDs"] -git-tree-sha1 = "966946d226e8b676ca6409454718accb18c34c54" +git-tree-sha1 = "fedfe5e7db7035271c3f58359007f971da1dde87" uuid = "61eb1bfa-7361-4325-ad38-22787b887f55" -version = "1.8.2" +version = "1.9.1" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Qt6Wayland_jll", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] @@ -908,16 +912,11 @@ git-tree-sha1 = "baaaebd42ed9ee1bd9173cfd56910e55a8622ee1" uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8" version = "2.13.0+1" -[[deps.IfElse]] -git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" -uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" -version = "0.1.1" - [[deps.ImplicitDiscreteSolve]] deps = ["ConcreteStructs", "DiffEqBase", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "OrdinaryDiffEqCore", "Reexport", "SciMLBase", "SymbolicIndexingInterface"] -git-tree-sha1 = "01eb732749884b8c481fc165c62c0b9652fd673a" +git-tree-sha1 = "dc9f649cbcdd4f2b402d7cbbd5cf61517b45ad5a" uuid = "3263718b-31ed-49cf-8a0f-35a466e8af96" -version = "1.9.0" +version = "2.0.0" [[deps.Indexing]] git-tree-sha1 = "ce1566720fd6b19ff3411404d4b977acd4814f9f" @@ -930,10 +929,10 @@ uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9" version = "0.1.5" [[deps.InfrastructureModels]] -deps = ["JuMP", "Memento"] -git-tree-sha1 = "f9c1f6bdac8ad3fca6fc24fcf68256958ad84c28" +deps = ["JuMP", "Logging"] +git-tree-sha1 = "32a8f6b30c92a88ecc2f66fb422d25fddd0da7ae" uuid = "2030c09a-7f63-5d83-885d-db604e0e9cc0" -version = "0.7.8" +version = "0.7.9" [[deps.InlineStrings]] git-tree-sha1 = "8f3d257792a522b4601c24a577954b0a8cd7334d" @@ -962,11 +961,12 @@ version = "2025.2.0+0" [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" +version = "1.11.0" [[deps.IntervalSets]] -git-tree-sha1 = "d966f85b3b7a8e49d034d27a189e9a4874b4391a" +git-tree-sha1 = "79d6bd28c8d9bccc2229784f1bd637689b256377" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.13" +version = "0.7.14" weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] @@ -991,9 +991,9 @@ version = "1.3.1" [[deps.Ipopt]] deps = ["Ipopt_jll", "LinearAlgebra", "OpenBLAS32_jll", "PrecompileTools"] -git-tree-sha1 = "f1b9bf4b24fa1844f25fe570836f75cdb9f5245e" +git-tree-sha1 = "f284747bf301bdbbb0e455c48ba4ac852ccfb7d3" uuid = "b6b21f68-93f8-5de0-b562-5493be1d77c9" -version = "1.14.1" +version = "1.14.3" weakdeps = ["MathOptInterface"] [deps.Ipopt.extensions] @@ -1053,15 +1053,15 @@ version = "0.2.1" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "b6893345fd6658c8e475d40155789f4860ac3b21" +git-tree-sha1 = "c0c9b76f3520863909825cbecdef58cd63de705a" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.1.4+0" +version = "3.1.5+0" [[deps.JuMP]] deps = ["LinearAlgebra", "MacroTools", "MathOptInterface", "MutableArithmetics", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays"] -git-tree-sha1 = "4091a1338a0e32766b11b9bd3fac247d34200c77" +git-tree-sha1 = "6941586d9cf3c0af718bc6e6250dcf24057d412e" uuid = "4076af6c-e467-56ae-b986-b466b2749572" -version = "1.30.0" +version = "1.30.1" [deps.JuMP.extensions] JuMPDimensionalDataExt = "DimensionalData" @@ -1071,9 +1071,9 @@ version = "1.30.0" [[deps.JumpProcesses]] deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "PoissonRandom", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "SymbolicIndexingInterface"] -git-tree-sha1 = "1d9e36e530080a9f097de67c2576c3f83d418dd0" +git-tree-sha1 = "2a8e5b9b90ef0da05f61904d0a39a7b1c0a83310" uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" -version = "9.23.2" +version = "9.28.0" [deps.JumpProcesses.extensions] JumpProcessesKernelAbstractionsExt = ["Adapt", "KernelAbstractions"] @@ -1081,7 +1081,6 @@ version = "9.23.2" [deps.JumpProcesses.weakdeps] Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" - FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" OrdinaryDiffEqCore = "bbf590c4-e513-4bbe-9b18-05decba2e5d8" @@ -1099,15 +1098,15 @@ version = "3.100.3+0" [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "aaafe88dccbd957a8d82f7d05be9b69172e0cee3" +git-tree-sha1 = "17b94ecafcfa45e8360a4fc9ca6b583b049e4e37" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "4.0.1+0" +version = "4.1.0+0" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Unicode"] -git-tree-sha1 = "69e4739502b7ab5176117e97e1664ed181c35036" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "PrecompileTools", "Preferences", "Printf", "Unicode"] +git-tree-sha1 = "85592339c4363f40863f0b61f9cba80b885070c3" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "9.4.6" +version = "9.7.1" [deps.LLVM.extensions] BFloat16sExt = "BFloat16s" @@ -1117,9 +1116,9 @@ version = "9.4.6" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "8e76807afb59ebb833e9b131ebf1a8c006510f33" +git-tree-sha1 = "f1d1adfff151fd02b4062d1af82df02052dc4a0c" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.38+0" +version = "0.0.42+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1127,12 +1126,6 @@ git-tree-sha1 = "eb62a3deb62fc6d8822c0c4bef73e4412419c5d8" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" version = "18.1.8+0" -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "1c602b1127f4751facb671441ca72715cc95938a" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.3+0" - [[deps.LaTeXStrings]] git-tree-sha1 = "dda21b8cbd6a6c40d9d02a73230f9d70fed6918c" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" @@ -1156,15 +1149,10 @@ version = "0.16.10" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" tectonic_jll = "d7dd28d6-a5e6-559c-9131-7eb760cdacc5" -[[deps.LayoutPointers]] -deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "a9eaadb366f5493a5654e843864c13d8b107548c" -uuid = "10f19ff3-798f-405d-979b-55457f8fc047" -version = "0.1.17" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" +version = "1.11.0" [[deps.LeftChildRightSiblingTrees]] deps = ["AbstractTrees"] @@ -1180,16 +1168,17 @@ version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.4.0+0" +version = "8.6.0+0" [[deps.LibGit2]] deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +version = "1.11.0" [[deps.LibGit2_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.6.4+0" +version = "1.7.2+0" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] @@ -1204,6 +1193,7 @@ version = "0.13.1+0" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" +version = "1.11.0" [[deps.Libffi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1225,9 +1215,9 @@ version = "1.18.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "97bbca976196f2a1eb9607131cb108c69ec3f8a6" +git-tree-sha1 = "cc3ad4faf30015a3e8094c9b5b7f19e85bdf2386" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] @@ -1237,15 +1227,15 @@ version = "4.7.2+0" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d0205286d9eceadc518742860bf23f703779a3d6" +git-tree-sha1 = "d620582b1f0cbe2c72dd1d5bd195a9ce73370ab1" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.LineSearch]] deps = ["ADTypes", "CommonSolve", "ConcreteStructs", "FastClosures", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "SciMLBase", "SciMLJacobianOperators", "StaticArraysCore"] -git-tree-sha1 = "9f7253c0574b4b585c8909232adb890930da980a" +git-tree-sha1 = "fd58a77c92e7c8f1db25c9839127d52943a49349" uuid = "87fe0de2-c867-4266-b59a-2f0a94fc965b" -version = "0.1.6" +version = "0.1.9" weakdeps = ["LineSearches"] [deps.LineSearch.extensions] @@ -1260,6 +1250,7 @@ version = "7.5.1" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +version = "1.11.0" [[deps.LinearOperators]] deps = ["FastClosures", "LinearAlgebra", "Printf", "SparseArrays", "TimerOutputs"] @@ -1284,10 +1275,10 @@ version = "2.13.0" Metal = "dde4c033-4e86-420c-a63e-0dd931031962" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "adbd4c44ef9361c67dd5dc192b66ac12b9e1be85" +deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] +git-tree-sha1 = "42b5cb44317e89ef75dd841c9c8eba9045bf9ff0" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "3.68.0" +version = "3.75.0" [deps.LinearSolve.extensions] LinearSolveAMDGPUExt = "AMDGPU" @@ -1298,7 +1289,9 @@ version = "3.68.0" LinearSolveCUDAExt = "CUDA" LinearSolveCUDSSExt = "CUDSS" LinearSolveCUSOLVERRFExt = ["CUSOLVERRF", "SparseArrays"] + LinearSolveChainRulesCoreExt = "ChainRulesCore" LinearSolveCliqueTreesExt = ["CliqueTrees", "SparseArrays"] + LinearSolveElementalExt = "Elemental" LinearSolveEnzymeExt = ["EnzymeCore", "SparseArrays"] LinearSolveFastAlmostBandedMatricesExt = "FastAlmostBandedMatrices" LinearSolveFastLapackInterfaceExt = "FastLapackInterface" @@ -1310,7 +1303,9 @@ version = "3.68.0" LinearSolveKrylovKitExt = "KrylovKit" LinearSolveMetalExt = "Metal" LinearSolveMooncakeExt = "Mooncake" + LinearSolvePETScCSRExt = ["PETSc", "SparseArrays", "SparseMatricesCSR"] LinearSolvePETScExt = ["PETSc", "SparseArrays"] + LinearSolvePETScMPIExt = ["PETSc", "PartitionedArrays", "SparseArrays", "SparseMatricesCSR"] LinearSolveParUExt = ["ParU_jll", "SparseArrays"] LinearSolvePardisoExt = ["Pardiso", "SparseArrays"] LinearSolveRecursiveFactorizationExt = "RecursiveFactorization" @@ -1325,7 +1320,9 @@ version = "3.68.0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" CUSOLVERRF = "a8cc9031-bad2-4722-94f5-40deabb4245c" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" + Elemental = "902c3f28-d1ec-5e7e-8399-a24c3845ee38" EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" FastLapackInterface = "29a986be-02c6-4525-aec4-84b980013641" @@ -1341,8 +1338,10 @@ version = "3.68.0" PETSc = "ace2c81b-2b5f-4b1e-a30d-d662738edfe0" ParU_jll = "9e0b026c-e8ce-559c-a2c4-6a3d5c955bc9" Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" + PartitionedArrays = "5a9dfac6-5c52-46f7-8278-5e2210713be9" RecursiveFactorization = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseMatricesCSR = "a0a7dd2c-ebf4-11e9-1f05-cf50bc540ca1" Sparspak = "e56a9233-b9d6-4f03-8d0f-1825330902ac" blis_jll = "6136c539-28a5-5bf0-87cc-b183200dce32" @@ -1364,6 +1363,7 @@ version = "0.3.29" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" +version = "1.11.0" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] @@ -1394,20 +1394,24 @@ git-tree-sha1 = "1e0228a030642014fe5cfe68c2c0a818f9e3f522" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" version = "0.5.16" -[[deps.ManualMemory]] -git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" -uuid = "d125e4d3-2237-4719-b19c-fa641b8a4667" -version = "0.1.8" - [[deps.Markdown]] deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +version = "1.11.0" [[deps.MathOptInterface]] -deps = ["BenchmarkTools", "CodecBzip2", "CodecZlib", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test"] -git-tree-sha1 = "220a518968af92166a3e50c45f12569fcdf585ab" +deps = ["CodecBzip2", "CodecZlib", "ForwardDiff", "JSON", "LinearAlgebra", "MutableArithmetics", "NaNMath", "OrderedCollections", "PrecompileTools", "Printf", "SparseArrays", "SpecialFunctions", "Test"] +git-tree-sha1 = "73939c06e863f8d68322106fdc2464f3443b5e1a" uuid = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" -version = "1.50.0" +version = "1.51.0" + + [deps.MathOptInterface.extensions] + MathOptInterfaceBenchmarkToolsExt = "BenchmarkTools" + MathOptInterfaceCliqueTreesExt = "CliqueTrees" + + [deps.MathOptInterface.weakdeps] + BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" [[deps.MaybeInplace]] deps = ["ArrayInterface", "LinearAlgebra", "MacroTools"] @@ -1428,7 +1432,7 @@ version = "1.1.10" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.1010+0" +version = "2.28.6+0" [[deps.Measures]] git-tree-sha1 = "b513cedd20d9c914783d8ad83d08120702bf2c77" @@ -1455,12 +1459,13 @@ version = "1.2.0" [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" +version = "1.11.0" [[deps.ModelingToolkit]] -deps = ["ADTypes", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "ConstructionBase", "DataStructures", "DiffEqBase", "DifferentiationInterface", "DocStringExtensions", "FillArrays", "FindFirstFunctions", "ForwardDiff", "Graphs", "InteractiveUtils", "Libdl", "LinearAlgebra", "ModelingToolkitBase", "ModelingToolkitTearing", "Moshi", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "StateSelection", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] -git-tree-sha1 = "8a8425f770317bd9a14200bf57f2462c6ce846d3" +deps = ["ADTypes", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "ConstructionBase", "DataStructures", "DiffEqBase", "DifferentiationInterface", "DocStringExtensions", "FillArrays", "ForwardDiff", "Graphs", "InteractiveUtils", "Libdl", "LinearAlgebra", "ModelingToolkitBase", "ModelingToolkitTearing", "Moshi", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "StateSelection", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] +git-tree-sha1 = "8527fee82ed8dc6934827b447b0555674c3ba1be" uuid = "961ee093-0014-501f-94e3-6117800e7a78" -version = "11.17.0" +version = "11.24.1" [deps.ModelingToolkit.extensions] MTKFMIExt = "FMIImport" @@ -1475,10 +1480,10 @@ version = "11.17.0" OrdinaryDiffEqRosenbrock = "43230ef6-c299-4910-a778-202eb28ce4ce" [[deps.ModelingToolkitBase]] -deps = ["ADTypes", "AbstractTrees", "ArrayInterface", "BandedMatrices", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffRules", "DifferentiationInterface", "DocStringExtensions", "DomainSets", "EnumX", "EnzymeCore", "ExprTools", "FillArrays", "FindFirstFunctions", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "ImplicitDiscreteSolve", "InteractiveUtils", "JumpProcesses", "Libdl", "LinearAlgebra", "Moshi", "NaNMath", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Random", "ReadOnlyDicts", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] -git-tree-sha1 = "0967487a5375f4b51ddc503d7a19f325094d212e" +deps = ["ADTypes", "AbstractTrees", "ArrayInterface", "BandedMatrices", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffRules", "DifferentiationInterface", "DocStringExtensions", "DomainSets", "EnumX", "EnzymeCore", "ExprTools", "FillArrays", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "ImplicitDiscreteSolve", "InteractiveUtils", "JumpProcesses", "Libdl", "LinearAlgebra", "Moshi", "NaNMath", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Random", "ReadOnlyDicts", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] +git-tree-sha1 = "d52da5508ed6c42b4e7c01356287d7114f3e13db" uuid = "7771a370-6774-4173-bd38-47e70ca0b839" -version = "1.24.0" +version = "1.33.1" [deps.ModelingToolkitBase.extensions] MTKBifurcationKitExt = "BifurcationKit" @@ -1508,9 +1513,9 @@ version = "1.24.0" [[deps.ModelingToolkitTearing]] deps = ["BipartiteGraphs", "CommonSolve", "DocStringExtensions", "Graphs", "LinearAlgebra", "ModelingToolkitBase", "Moshi", "OffsetArrays", "OrderedCollections", "SciMLBase", "Setfield", "SparseArrays", "StateSelection", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UUIDs"] -git-tree-sha1 = "fa586569b6d022710d1bd3fd6794a2466e702ab5" +git-tree-sha1 = "3ad8028ba31ef212307586416f1b341b5e8d4eb9" uuid = "6bb917b9-1269-42b9-9f7c-b0dca72083ab" -version = "1.10.3" +version = "1.13.3" [[deps.Moshi]] deps = ["ExproniconLite", "Jieko"] @@ -1520,7 +1525,7 @@ version = "0.3.7" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2025.12.2" +version = "2023.12.12" [[deps.MuladdMacro]] git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" @@ -1528,10 +1533,10 @@ uuid = "46d2c3a1-f734-5fdb-9937-b9b9aeba4221" version = "0.2.4" [[deps.MultivariatePolynomials]] -deps = ["DataStructures", "LinearAlgebra", "MutableArithmetics"] -git-tree-sha1 = "139071bb741eeaa3ee7d4109f1299e9282882d79" +deps = ["DataStructures", "LinearAlgebra", "MutableArithmetics", "StarAlgebras"] +git-tree-sha1 = "4838893d9b035c2f6967c0d533350e1755b58a70" uuid = "102ac46a-7ee4-5c85-9060-abc95bfdeaa3" -version = "0.5.14" +version = "0.5.19" weakdeps = ["ChainRulesCore"] [deps.MultivariatePolynomials.extensions] @@ -1539,9 +1544,9 @@ weakdeps = ["ChainRulesCore"] [[deps.MutableArithmetics]] deps = ["LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "22df8573f8e7c593ac205455ca088989d0a2c7a0" +git-tree-sha1 = "7c25249fc13a070f5ba433c50e21e22bb33c6fb0" uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" -version = "1.6.7" +version = "1.7.1" [[deps.NLPModels]] deps = ["FastClosures", "LinearAlgebra", "LinearOperators", "Printf", "SparseArrays"] @@ -1551,15 +1556,15 @@ version = "0.21.12" [[deps.NLPModelsIpopt]] deps = ["Ipopt", "NLPModels", "NLPModelsModifiers", "SolverCore"] -git-tree-sha1 = "37a2187dc5f1291f6a6cb592acaa59cee685b5fb" +git-tree-sha1 = "260a33809f49f7ccb011fdc1d9ebcf8879bc9757" uuid = "f4238b75-b362-5c4c-b852-0801c9a21d71" -version = "0.11.2" +version = "0.11.3" [[deps.NLPModelsModifiers]] deps = ["FastClosures", "LinearAlgebra", "LinearOperators", "NLPModels", "Printf", "SparseArrays"] -git-tree-sha1 = "15bd5325aaa45090019f43b49cb3cb938b195f04" +git-tree-sha1 = "3a6ec5add6f5a95d598648432ac06126157ba11c" uuid = "e01155f1-5c6f-4375-a9d8-616dd036575f" -version = "0.7.4" +version = "0.8.0" [[deps.NLSolversBase]] deps = ["ADTypes", "DifferentiationInterface", "Distributed", "FiniteDiff", "ForwardDiff"] @@ -1584,10 +1589,10 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.NonlinearSolveBase]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "LinearAlgebra", "LogExpFunctions", "Markdown", "MaybeInplace", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "82d5cc298062b2a214b3aeb6eb095af44d5ecda6" +deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "LogExpFunctions", "Markdown", "MaybeInplace", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] +git-tree-sha1 = "a19a5df29ef2b197499fc631fa1a59385ae15262" uuid = "be0214bd-f91f-a760-ac4e-3421ce2b2da0" -version = "2.17.0" +version = "2.25.0" [deps.NonlinearSolveBase.extensions] NonlinearSolveBaseBandedMatricesExt = "BandedMatrices" @@ -1617,9 +1622,9 @@ version = "2.17.0" [[deps.NonlinearSolveFirstOrder]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConcreteStructs", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLJacobianOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "eea7cbe389b168c77df7ff779fb7277019c685c8" +git-tree-sha1 = "ce68820a4f421fb5bee7ec4dcf875aff33886bfb" uuid = "5959db7a-ea39-4486-b5fe-2dd0bf03d60d" -version = "2.0.0" +version = "2.1.1" [[deps.ObjectFile]] deps = ["Reexport", "StructIO"] @@ -1644,14 +1649,14 @@ version = "1.3.6+0" [[deps.OpenBLAS32_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6065c4cff8fee6c6770b277af45d5082baacdba1" +git-tree-sha1 = "dd0d9979377e43918a80486a562ddedcc6d9bdf3" uuid = "656ef2d0-ae68-5445-9ca0-591084a874a2" -version = "0.3.24+0" +version = "0.3.33+0" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.23+5" +version = "0.3.27+1" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] @@ -1666,9 +1671,9 @@ version = "1.6.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "c9cbeda6aceffc52d8a0017e71db27c7a7c0beaf" +git-tree-sha1 = "2ac022577e5eac7da040de17776d51bb770cd895" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.5.5+0" +version = "3.5.6+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -1688,15 +1693,15 @@ weakdeps = ["MathOptInterface"] [[deps.Optimization]] deps = ["ADTypes", "ArrayInterface", "ConsoleProgressMonitor", "DocStringExtensions", "LinearAlgebra", "Logging", "LoggingExtras", "OptimizationBase", "Printf", "Reexport", "SciMLBase", "SparseArrays", "TerminalLoggers"] -git-tree-sha1 = "2c409c814c2d745620fdd55391a66ee514561146" +git-tree-sha1 = "5366b739224064a03399be1a21a18e4553631181" uuid = "7f7a1694-90dd-40f0-9382-eb1efda571ba" -version = "5.5.0" +version = "5.5.1" [[deps.OptimizationBase]] deps = ["ADTypes", "ArrayInterface", "DifferentiationInterface", "DocStringExtensions", "FastClosures", "LinearAlgebra", "PDMats", "PrecompileTools", "Reexport", "SciMLBase", "SciMLLogging", "SparseArrays", "SparseConnectivityTracer", "SparseMatrixColorings", "SymbolicIndexingInterface"] -git-tree-sha1 = "a3d7837832e515111c95a02df7dc55edbdf17d8a" +git-tree-sha1 = "642ea067d729f1f18795a434550b40de0a4fbbc8" uuid = "bca83a33-5cc9-4baa-983d-23429ab6bcbb" -version = "5.1.0" +version = "5.1.1" [deps.OptimizationBase.extensions] OptimizationChainRulesCoreExt = "ChainRulesCore" @@ -1724,9 +1729,9 @@ version = "5.1.0" [[deps.OptimizationMOI]] deps = ["LinearAlgebra", "MathOptInterface", "ModelingToolkitBase", "OptimizationBase", "Reexport", "SciMLBase", "SciMLStructures", "SparseArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics"] -git-tree-sha1 = "23c0a53741fb18709132b655dc56c15b63d2a0ad" +git-tree-sha1 = "65ebab125eff6f19f9c26174bd51b94ab77dfc2b" uuid = "fd9f6733-72f4-499f-8506-86b2bdd0dea1" -version = "1.3.0" +version = "1.3.1" weakdeps = ["ModelingToolkit"] [[deps.Opus_jll]] @@ -1741,10 +1746,10 @@ uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.8.1" [[deps.OrdinaryDiffEqCore]] -deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ConcreteStructs", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FillArrays", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "Polyester", "PrecompileTools", "Preferences", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Static", "StaticArrayInterface", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "a045f288671d99e23efc4ea32564cedd0fc7373d" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ConcreteStructs", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "PrecompileTools", "Preferences", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "86c210d134f09139a294f0329006d6cc20275650" uuid = "bbf590c4-e513-4bbe-9b18-05decba2e5d8" -version = "3.23.0" +version = "4.0.0" [deps.OrdinaryDiffEqCore.extensions] OrdinaryDiffEqCoreMooncakeExt = "Mooncake" @@ -1771,15 +1776,15 @@ weakdeps = ["StatsBase"] [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "0662b083e11420952f2e62e17eddae7fc07d5997" +git-tree-sha1 = "58e5ed5e386e156bd93e86b305ebd21ac63d2d04" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" -version = "1.57.0+0" +version = "1.57.1+0" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "7d2f8f21da5db6a806faf7b9b292296da42b2810" +git-tree-sha1 = "5d5e0a78e971354b1c7bff0655d11fdc1b0e12c8" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.3" +version = "2.8.4" [[deps.Pidfile]] deps = ["FileWatching", "Test"] @@ -1794,9 +1799,13 @@ uuid = "30392449-352a-5448-841d-b1acce4e97dc" version = "0.44.2+0" [[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.10.0" +version = "1.11.0" +weakdeps = ["REPL"] + + [deps.Pkg.extensions] + REPLExt = "REPL" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1836,18 +1845,6 @@ git-tree-sha1 = "67afbcbe9e184d6729a92a022147ed4cf972ca7b" uuid = "e409e4f3-bfea-5376-8464-e040bb5c01ab" version = "0.4.7" -[[deps.Polyester]] -deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "16bbc30b5ebea91e9ce1671adc03de2832cff552" -uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.19" - -[[deps.PolyesterWeave]] -deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] -git-tree-sha1 = "645bed98cd47f72f67316fd42fc47dee771aefcd" -uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad" -version = "0.2.2" - [[deps.PooledArrays]] deps = ["DataAPI", "Future"] git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" @@ -1911,10 +1908,11 @@ version = "0.5.7" [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" +version = "1.11.0" [[deps.Profile]] -deps = ["Printf"] uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79" +version = "1.11.0" [[deps.ProgressLogging]] deps = ["Logging", "SHA", "UUIDs"] @@ -1978,12 +1976,14 @@ uuid = "e99dba38-086e-5de3-a5b1-6e4c66e897c3" version = "6.10.2+1" [[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" +version = "1.11.0" [[deps.Random]] deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +version = "1.11.0" [[deps.ReadOnlyArrays]] git-tree-sha1 = "e6f7ddf48cf141cb312b078ca21cb2d29d0dc11d" @@ -2010,16 +2010,19 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "LinearAlgebra", "PrecompileTools", "RecipesBase", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "18d2a6fd1ea9a8205cadb3a5704f8e51abdd748b" +git-tree-sha1 = "57b6fb3932fc8d1fc911f840d2c9de5fe3ba5008" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.48.0" +version = "4.3.0" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsCUDAExt = "CUDA" RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsFastBroadcastPolyesterExt = ["FastBroadcast", "Polyester"] RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsKernelAbstractionsExt = "KernelAbstractions" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsMooncakeExt = "Mooncake" RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] RecursiveArrayToolsStatisticsExt = "Statistics" @@ -2029,11 +2032,14 @@ version = "3.48.0" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" @@ -2067,15 +2073,15 @@ version = "1.16.2" [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "7257165d5477fd1025f7cb656019dcb6b0512c38" +git-tree-sha1 = "cfcdc949c4660544ab0fdeed169561cb22f835f4" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.17" +version = "0.5.18" [[deps.SCCNonlinearSolve]] deps = ["CommonSolve", "PrecompileTools", "Reexport", "SciMLBase", "SymbolicIndexingInterface"] -git-tree-sha1 = "b1fed39f2acdd4524c17b50ce6f4406be61b936d" +git-tree-sha1 = "521a298294a6fd11068df0148b4d57bb31550453" uuid = "9dfe8606-65a1-4bb3-9748-cb89d1561431" -version = "1.11.0" +version = "1.13.0" weakdeps = ["ChainRulesCore"] [deps.SCCNonlinearSolve.extensions] @@ -2085,11 +2091,6 @@ weakdeps = ["ChainRulesCore"] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" -[[deps.SIMDTypes]] -git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" -uuid = "94e857df-77ce-4151-89e5-788b33177be4" -version = "0.1.0" - [[deps.SPRAL_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Hwloc_jll", "JLLWrappers", "Libdl", "METIS_jll", "libblastrampoline_jll"] git-tree-sha1 = "139fa63f03a16b3d859d925ee9149dfc15f21ece" @@ -2097,10 +2098,10 @@ uuid = "319450e9-13b8-58e8-aa9f-8fd1420848ab" version = "2025.9.18+0" [[deps.SciMLBase]] -deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Moshi", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "6e8c1bb72b768923d409edface0b3dcf61180d8d" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "Random", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] +git-tree-sha1 = "450a8405f96d0a7c6caabed0852def06ba8c6bf1" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.152.1" +version = "3.7.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2108,7 +2109,6 @@ version = "2.152.1" SciMLBaseDistributionsExt = "Distributions" SciMLBaseEnzymeExt = "Enzyme" SciMLBaseForwardDiffExt = "ForwardDiff" - SciMLBaseMLStyleExt = "MLStyle" SciMLBaseMakieExt = "Makie" SciMLBaseMeasurementsExt = "Measurements" SciMLBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" @@ -2128,7 +2128,6 @@ version = "2.152.1" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - MLStyle = "d8e11817-5142-5d16-987a-aa16d5891078" Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" @@ -2143,9 +2142,9 @@ version = "2.152.1" [[deps.SciMLJacobianOperators]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DifferentiationInterface", "FastClosures", "LinearAlgebra", "SciMLBase", "SciMLOperators"] -git-tree-sha1 = "e96d5e96debf7f80a50d0b976a13dea556ccfd3a" +git-tree-sha1 = "7156a5b51cba1bea33a82a036939ead4131f92bc" uuid = "19f34311-ddf3-4b8b-af20-060888a46c0e" -version = "0.1.12" +version = "0.1.13" [[deps.SciMLLogging]] deps = ["Logging", "LoggingExtras", "Preferences"] @@ -2159,9 +2158,9 @@ weakdeps = ["Tracy"] [[deps.SciMLOperators]] deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra"] -git-tree-sha1 = "794c760e6aafe9f40dcd7dd30526ea33f0adc8b7" +git-tree-sha1 = "0e34162268883db01c04f988895a80d0659071bb" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "1.15.1" +version = "1.17.0" weakdeps = ["SparseArrays", "StaticArraysCore"] [deps.SciMLOperators.extensions] @@ -2193,6 +2192,7 @@ version = "1.4.9" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" +version = "1.11.0" [[deps.Setfield]] deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] @@ -2213,9 +2213,9 @@ version = "1.2.0" [[deps.SimpleNonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "744c3f0fb186ad28376199c1e72ca39d0c614b5d" +git-tree-sha1 = "d688de789b7e643326caf9a1051376dadbcd8873" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "2.11.0" +version = "2.11.1" [deps.SimpleNonlinearSolve.extensions] SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" @@ -2235,6 +2235,7 @@ version = "0.9.5" [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" +version = "1.11.0" [[deps.SolverCore]] deps = ["Printf"] @@ -2255,7 +2256,7 @@ version = "1.2.2" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -version = "1.10.0" +version = "1.11.0" [[deps.SparseConnectivityTracer]] deps = ["ADTypes", "DocStringExtensions", "FillArrays", "LinearAlgebra", "Random", "SparseArrays"] @@ -2279,28 +2280,31 @@ version = "1.2.1" [[deps.SparseMatrixColorings]] deps = ["ADTypes", "DocStringExtensions", "LinearAlgebra", "PrecompileTools", "Random", "SparseArrays"] -git-tree-sha1 = "1c1be8c6fdfaf9b6c9e156c509e672953b8e6af7" +git-tree-sha1 = "f63d76c7b7c329cf11badd564fd8ba877b09c3fe" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.4.26" +version = "0.4.27" [deps.SparseMatrixColorings.extensions] - SparseMatrixColoringsCUDAExt = "CUDA" + SparseMatrixColoringsCUDAExt = ["CUDA", "cuSPARSE"] SparseMatrixColoringsCliqueTreesExt = "CliqueTrees" SparseMatrixColoringsColorsExt = "Colors" + SparseMatrixColoringsGPUArraysExt = "GPUArrays" SparseMatrixColoringsJuMPExt = ["JuMP", "MathOptInterface"] [deps.SparseMatrixColorings.weakdeps] CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" + GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" JuMP = "4076af6c-e467-56ae-b986-b466b2749572" MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" + cuSPARSE = "b26da814-b3bc-49ef-b0ee-c816305aa060" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "5acc6a41b3082920f79ca3c759acbcecf18a8d78" +git-tree-sha1 = "2700b235561b0335d5bef7097a111dc513b8655e" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.7.1" +version = "2.7.2" weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] @@ -2312,11 +2316,17 @@ git-tree-sha1 = "4f96c596b8c8258cc7d3b19797854d368f243ddc" uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" version = "1.0.4" +[[deps.StarAlgebras]] +deps = ["LinearAlgebra", "MutableArithmetics", "SparseArrays"] +git-tree-sha1 = "235b1f9d287bbf34083b3d0829343a7942c0ad1c" +uuid = "0c0c59c1-dc5f-42e9-9a8b-b5dc384a6cd1" +version = "0.3.0" + [[deps.StateSelection]] deps = ["BipartiteGraphs", "DocStringExtensions", "FindFirstFunctions", "Graphs", "LinearAlgebra", "OrderedCollections", "Setfield", "SparseArrays"] -git-tree-sha1 = "9549b7513b982eef19b79b3877e2a853ae89475f" +git-tree-sha1 = "824641f6d414f0885200e034e3853c3c2f61ac43" uuid = "64909d44-ed92-46a8-bbd9-f047dfbdc84b" -version = "1.6.0" +version = "1.9.2" [deps.StateSelection.extensions] StateSelectionDeepDiffsExt = "DeepDiffs" @@ -2324,23 +2334,6 @@ version = "1.6.0" [deps.StateSelection.weakdeps] DeepDiffs = "ab62b9b5-e342-54a8-a765-a90f495de1a6" -[[deps.Static]] -deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools", "SciMLPublic"] -git-tree-sha1 = "49440414711eddc7227724ae6e570c7d5559a086" -uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.3.1" - -[[deps.StaticArrayInterface]] -deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "SciMLPublic", "Static"] -git-tree-sha1 = "aa1ea41b3d45ac449d10477f65e2b40e3197a0d2" -uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.9.0" -weakdeps = ["OffsetArrays", "StaticArrays"] - - [deps.StaticArrayInterface.extensions] - StaticArrayInterfaceOffsetArraysExt = "OffsetArrays" - StaticArrayInterfaceStaticArraysExt = "StaticArrays" - [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] git-tree-sha1 = "246a8bb2e6667f832eea063c3a56aef96429a3db" @@ -2358,9 +2351,14 @@ uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" version = "1.4.4" [[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] +deps = ["LinearAlgebra"] +git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.10.0" +version = "1.11.1" +weakdeps = ["SparseArrays"] + + [deps.Statistics.extensions] + SparseArraysExt = ["SparseArrays"] [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -2374,12 +2372,6 @@ git-tree-sha1 = "aceda6f4e598d331548e04cc6b2124a6148138e3" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" version = "0.34.10" -[[deps.StrideArraysCore]] -deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "83151ba8065a73f53ca2ae98bc7274d817aa30f2" -uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.5.8" - [[deps.StringManipulation]] deps = ["PrecompileTools"] git-tree-sha1 = "d05693d339e37d6ab134c5ab53c29fce5ee5d7d5" @@ -2397,6 +2389,10 @@ git-tree-sha1 = "159331b30e94d7b11379037feeb9b690950cace8" uuid = "856f2bd8-1eba-4b0a-8007-ebc267875bd4" version = "1.11.0" +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" + [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" @@ -2404,7 +2400,7 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "7.2.1+1" +version = "7.7.0+0" [[deps.SymbolicIndexingInterface]] deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] @@ -2424,9 +2420,9 @@ version = "1.1.0" [[deps.SymbolicUtils]] deps = ["AbstractTrees", "ArrayInterface", "Combinatorics", "ConstructionBase", "DataStructures", "Dictionaries", "DocStringExtensions", "DynamicPolynomials", "EnumX", "ExproniconLite", "Graphs", "LinearAlgebra", "MacroTools", "Moshi", "MultivariatePolynomials", "MutableArithmetics", "NaNMath", "PrecompileTools", "ReadOnlyArrays", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "TaskLocalValues", "TermInterface", "WeakCacheSets"] -git-tree-sha1 = "b214b89e4b384ca27561c34aa0169da0de29977d" +git-tree-sha1 = "ae8741c34009171ee8e46d5c209cf0a15c469928" uuid = "d1185830-fcd6-423d-90d6-eec64667417b" -version = "4.21.0" +version = "4.26.0" [deps.SymbolicUtils.extensions] SymbolicUtilsChainRulesCoreExt = "ChainRulesCore" @@ -2442,9 +2438,9 @@ version = "4.21.0" [[deps.Symbolics]] deps = ["ADTypes", "AbstractPlutoDingetjes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "Moshi", "MultivariatePolynomials", "MutableArithmetics", "NaNMath", "PrecompileTools", "Preferences", "Primes", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLPublic", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] -git-tree-sha1 = "b746b6bb7a4d999c201effbccc9d5bf46a9bc43f" +git-tree-sha1 = "85bb4be51a7e90e531b1faa926b9497f436ca535" uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7" -version = "7.16.1" +version = "7.21.0" [deps.Symbolics.extensions] SymbolicsD3TreesExt = "D3Trees" @@ -2520,12 +2516,7 @@ version = "0.1.7" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.ThreadingUtilities]] -deps = ["ManualMemory"] -git-tree-sha1 = "d969183d3d244b6c33796b5ed01ab97328f2db85" -uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" -version = "0.5.5" +version = "1.11.0" [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] @@ -2570,6 +2561,7 @@ version = "1.6.1" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +version = "1.11.0" [[deps.UnPack]] git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" @@ -2578,6 +2570,7 @@ version = "1.0.2" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +version = "1.11.0" [[deps.UnicodeFun]] deps = ["REPL"] @@ -2620,9 +2613,9 @@ version = "2.13.9+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "9cce64c0fdd1960b597ba7ecda2950b5ed957438" +git-tree-sha1 = "b29c22e245d092b8b4e8d3c09ad7baa586d9f573" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.8.2+0" +version = "5.8.3+0" [[deps.Xorg_libICE_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2698,9 +2691,9 @@ version = "0.9.12+0" [[deps.Xorg_libpciaccess_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "4909eb8f1cbf6bd4b1c30dd18b2ead9019ef2fad" +git-tree-sha1 = "58972370b81423fc546c56a60ed1a009450177c3" uuid = "a65dc6b1-eb27-53a1-bb3e-dea574b5389e" -version = "0.18.1+0" +version = "0.19.0+0" [[deps.Xorg_libxcb_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXau_jll", "Xorg_libXdmcp_jll"] @@ -2758,9 +2751,9 @@ version = "1.4.7+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "00af7ebdc563c9217ecc67776d1bbf037dbcebf4" +git-tree-sha1 = "429722587208f02b1cecbddcd20133df2f1ed796" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.44.0+0" +version = "2.47.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2793,9 +2786,9 @@ version = "0.61.1+0" [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" +git-tree-sha1 = "850b06095ee71f0135d644ffd8a52850699581ed" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.13.1+0" +version = "3.13.3+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] @@ -2840,9 +2833,9 @@ version = "1.28.1+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" +git-tree-sha1 = "e51150d5ab85cee6fc36726850f0e627ad2e4aba" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.55+0" +version = "1.6.58+0" [[deps.libva_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll", "Xorg_libXext_jll", "Xorg_libXfixes_jll", "libdrm_jll"] @@ -2871,7 +2864,7 @@ version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.52.0+1" +version = "1.59.0+0" [[deps.oneTBB_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] @@ -2882,7 +2875,7 @@ version = "2022.0.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.6.1+0" +version = "17.4.0+2" [[deps.pixi_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] diff --git a/benchmarks/OptimizationFrameworks/optimal_powerflow.jmd b/benchmarks/OptimizationFrameworks/optimal_powerflow.jmd index fe523fc47..930831bcd 100644 --- a/benchmarks/OptimizationFrameworks/optimal_powerflow.jmd +++ b/benchmarks/OptimizationFrameworks/optimal_powerflow.jmd @@ -578,7 +578,7 @@ function solve_opf_optimization(dataset; adchoice = Optimization.AutoSparse(Opti solve_time_with_compilation = @elapsed sol = Optimization.solve( prob, Ipopt.Optimizer(), print_level = PRINT_LEVEL, max_cpu_time = MAX_CPU_TIME) - cost = sol.minimum + cost = sol.objective feasible = (sol.retcode == Optimization.SciMLBase.ReturnCode.Success) #println(sol.u) # solution vector @@ -800,7 +800,7 @@ function solve_opf_mtk(dataset) solve_time_with_compilation = @elapsed sol = OptimizationMOI.solve(prob, Ipopt.Optimizer()) solve_time_without_compilation = @elapsed sol = OptimizationMOI.solve(prob, Ipopt.Optimizer()) - cost = sol.minimum + cost = sol.objective feasible = (sol.retcode == Optimization.SciMLBase.ReturnCode.Success) return (prob, sol), diff --git a/benchmarks/PINNErrorsVsTime/Manifest.toml b/benchmarks/PINNErrorsVsTime/Manifest.toml index 7a60258a4..94eecffaf 100644 --- a/benchmarks/PINNErrorsVsTime/Manifest.toml +++ b/benchmarks/PINNErrorsVsTime/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.8" +julia_version = "1.11.9" manifest_format = "2.0" -project_hash = "5d74cdac0332a70f5ccb3027ea2a9f5f2e5cf971" +project_hash = "5bb616a79db830e2f3e627781abce065edf089a0" [[deps.ADTypes]] -git-tree-sha1 = "e2478490447631aedba0823d4d7a80b2cc8cdb32" +git-tree-sha1 = "bbc22a9a08a0ef6460041086d8a7b27940ed4ffd" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.14.0" +version = "1.22.0" weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] [deps.ADTypes.extensions] @@ -27,10 +27,18 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "aa469a7830413bd4c855963e3f648bd9d145c2c3" +deps = ["BangBang", "ConsoleProgressMonitor", "Dates", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "UUIDs"] +git-tree-sha1 = "8ac6182431567907e0d5170bcac6dd48fa541f78" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "5.6.0" +version = "5.15.1" + + [deps.AbstractMCMC.extensions] + AbstractMCMCOnlineStatsExt = "OnlineStats" + AbstractMCMCTensorBoardLoggerExt = "TensorBoardLogger" + + [deps.AbstractMCMC.weakdeps] + OnlineStats = "a15396b6-48d5-5d58-9928-6d29437db91e" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.AbstractTrees]] git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" @@ -39,9 +47,9 @@ version = "0.4.5" [[deps.Accessors]] deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] -git-tree-sha1 = "3b86719127f50670efe356bc11073d84b4ed7a5d" +git-tree-sha1 = "2eeb2c9bef11013efc6f8f97f32ee59b146b09fb" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.42" +version = "0.1.44" [deps.Accessors.extensions] AxisKeysExt = "AxisKeys" @@ -63,9 +71,9 @@ version = "0.1.42" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "cd8b948862abee8f3d3e9b73a102a9ca924debb0" +git-tree-sha1 = "0761717147821d696c9470a7a86364b2fbd22fd8" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.2.0" +version = "4.5.2" weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] @@ -73,18 +81,22 @@ weakdeps = ["SparseArrays", "StaticArrays"] AdaptStaticArraysExt = "StaticArrays" [[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "6f6a228808fe00ad05b47d74747c800d3df18acb" +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Setfield", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "15e1bafe97eb0eeb77c8dae63cdcfa133986b254" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.6.4" +version = "0.8.3" [deps.AdvancedHMC.extensions] + AdvancedHMCADTypesExt = "ADTypes" AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCComponentArraysExt = "ComponentArrays" AdvancedHMCMCMCChainsExt = "MCMCChains" AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" [deps.AdvancedHMC.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" @@ -95,13 +107,13 @@ uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" version = "1.1.3" [[deps.ArgCheck]] -git-tree-sha1 = "680b3b8759bd4c54052ada14e52355ab69e07876" +git-tree-sha1 = "f9e9a66c9b7be1ad7372bbd9b062d9230c30c5ce" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.4.0" +version = "2.5.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.ArnoldiMethod]] deps = ["LinearAlgebra", "Random", "StaticArrays"] @@ -111,24 +123,27 @@ version = "0.4.0" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "017fcb757f8e921fb44ee063a7aafe5f89b86dd1" +git-tree-sha1 = "54f895554d05c83e3dd59f6a396671dae8999573" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.18.0" +version = "7.24.0" [deps.ArrayInterface.extensions] + ArrayInterfaceAMDGPUExt = "AMDGPU" ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceCUDSSExt = "CUDSS" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" ArrayInterfaceReverseDiffExt = "ReverseDiff" ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" [deps.ArrayInterface.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" @@ -136,16 +151,17 @@ version = "7.18.0" ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.ArrayLayouts]] -deps = ["FillArrays", "LinearAlgebra"] -git-tree-sha1 = "4e25216b8fea1908a0ce0f5d87368587899f75be" +deps = ["FillArrays", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "e0b47732a192dd59b9d079a06d04235e2f833963" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.11.1" +version = "1.12.2" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -153,12 +169,13 @@ weakdeps = ["SparseArrays"] [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +version = "1.11.0" [[deps.Atomix]] deps = ["UnsafeAtomics"] -git-tree-sha1 = "b5bb4dc6248fde467be2a863eb8452993e74d402" +git-tree-sha1 = "b8651b2eb5796a386b0398a20b519a6a6150f75c" uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "1.1.1" +version = "1.1.3" [deps.Atomix.extensions] AtomixCUDAExt = "CUDA" @@ -180,15 +197,15 @@ version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" +version = "0.4.8" [[deps.BangBang]] deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] -git-tree-sha1 = "26f41e1df02c330c4fa1e98d4aa2168fdafc9b1f" +git-tree-sha1 = "cceb62468025be98d42a5dc581b163c20896b040" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.4.4" +version = "0.4.9" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" @@ -208,16 +225,12 @@ version = "0.4.4" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" +version = "1.11.0" [[deps.Bijections]] -git-tree-sha1 = "d8b0439d2be438a5f2cd68ec158fe08a7b2595b7" +git-tree-sha1 = "a2d308fcd4c2fb90e943cf9cd2fbfa9c32b69733" uuid = "e2ed5e7c-b2de-5872-ae92-c73ca462fb04" -version = "0.1.9" +version = "0.2.2" [[deps.BitFlags]] git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" @@ -232,24 +245,27 @@ version = "0.1.6" [[deps.BlockArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] -git-tree-sha1 = "1ded9033f6067573314b27cd4b9ff01a1ba92cff" +git-tree-sha1 = "0f606a9894e2bcda541ceb82a91a13c5d450ed97" uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" -version = "1.4.0" +version = "1.9.3" [deps.BlockArrays.extensions] + BlockArraysAdaptExt = "Adapt" BlockArraysBandedMatricesExt = "BandedMatrices" [deps.BlockArrays.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" [[deps.BracketingNonlinearSolve]] deps = ["CommonSolve", "ConcreteStructs", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "95cb19c37ea427617e9795655667712f03058d98" +git-tree-sha1 = "7ad7171d693ae5552ac43862e7f6b61df4471c2b" uuid = "70df07ce-3d50-431d-a3e7-ca6ddb60ac1e" -version = "1.1.0" -weakdeps = ["ForwardDiff"] +version = "1.12.1" +weakdeps = ["ChainRulesCore", "ForwardDiff"] [deps.BracketingNonlinearSolve.extensions] + BracketingNonlinearSolveChainRulesCoreExt = ["ChainRulesCore", "ForwardDiff"] BracketingNonlinearSolveForwardDiffExt = "ForwardDiff" [[deps.Bzip2_jll]] @@ -258,40 +274,29 @@ git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" version = "1.0.9+0" -[[deps.CEnum]] -git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.5.0" - [[deps.CPUSummary]] -deps = ["CpuId", "IfElse", "PrecompileTools", "Static"] -git-tree-sha1 = "5a97e67919535d6841172016c9530fd69494e5ec" +deps = ["CpuId", "IfElse", "PrecompileTools", "Preferences", "Static"] +git-tree-sha1 = "f3a21d7fc84ba618a779d1ed2fcca2e682865bab" uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" -version = "0.2.6" - -[[deps.CSTParser]] -deps = ["Tokenize"] -git-tree-sha1 = "0157e592151e39fa570645e2b2debcdfb8a0f112" -uuid = "00ebfdb7-1f24-5e51-bd34-a7502290713f" -version = "3.4.3" +version = "0.2.7" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "009060c9a6168704143100f36ab08f06c2af4642" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d0efe2c6fdcdaa1c161d206aa8b933788397ec71" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.2+1" +version = "1.18.6+0" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "a975ae558af61a2a48720a6271661bf2621e0f4e" +git-tree-sha1 = "3c190c570fb3108c09f838607386d10c71701789" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.72.3" +version = "1.73.0" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "1713c74e00545bfe14605d2a2be1712de8fbcb58" +git-tree-sha1 = "12177ad6b3cad7fd50c8b3825ce24a99ad61c18f" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.25.1" +version = "1.26.1" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] @@ -311,22 +316,20 @@ version = "0.7.8" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "403f2d8e209681fcbd9468a8514efff3ea08452e" +git-tree-sha1 = "b0fd3f56fa442f81e0a47815c92245acfaaa4e34" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.29.0" +version = "3.31.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "c7acce7a7e1078a20a285211dd73cd3941a871d6" +git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.12.0" +version = "0.12.1" +weakdeps = ["StyledStrings"] [deps.ColorTypes.extensions] StyledStringsExt = "StyledStrings" - [deps.ColorTypes.weakdeps] - StyledStrings = "f489334b-da3d-4c2e-b8f0-e476e12c162b" - [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" @@ -339,9 +342,9 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "64e15186f0aa277e174aa81798f7eb8598e0157e" +git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.13.0" +version = "0.13.1" [[deps.Combinatorics]] git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" @@ -349,15 +352,23 @@ uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" version = "1.0.2" [[deps.CommonMark]] -deps = ["Crayons", "PrecompileTools"] -git-tree-sha1 = "3faae67b8899797592335832fccf4b3c80bb04fa" +deps = ["PrecompileTools"] +git-tree-sha1 = "65ea18ada9814f09c5013924c42fe8b53d6ee467" uuid = "a80b9123-70ca-4bc0-993e-6e3bcb318db6" -version = "0.8.15" +version = "0.10.3" + + [deps.CommonMark.extensions] + CommonMarkMarkdownASTExt = "MarkdownAST" + CommonMarkMarkdownExt = "Markdown" + + [deps.CommonMark.weakdeps] + Markdown = "d6f4376e-aef5-505a-96c1-9c027394607a" + MarkdownAST = "d0879d2d-cac2-40c8-9cee-1863dc0c7391" [[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" +version = "0.2.6" [[deps.CommonSubexpressions]] deps = ["MacroTools"] @@ -372,9 +383,9 @@ version = "1.0.0" [[deps.Compat]] deps = ["TOML", "UUIDs"] -git-tree-sha1 = "8ae8d32e09f0dcf42a36b90d4e17f5dd2e4c4215" +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.16.0" +version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -386,14 +397,15 @@ uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" version = "1.1.1+0" [[deps.ComponentArrays]] -deps = ["Adapt", "ArrayInterface", "ChainRulesCore", "ConstructionBase", "ForwardDiff", "Functors", "LinearAlgebra", "StaticArrayInterface", "StaticArraysCore"] -git-tree-sha1 = "eac93b2a05d33465d50e5448aefba8c06a69f738" +deps = ["Adapt", "ArrayInterface", "ChainRulesCore", "ConstructionBase", "Functors", "LinearAlgebra", "StaticArrayInterface", "StaticArraysCore"] +git-tree-sha1 = "342e21057cfa3152eb456ebcda25ed5ce3f0e275" uuid = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" -version = "0.15.25" +version = "0.15.37" [deps.ComponentArrays.extensions] ComponentArraysGPUArraysExt = "GPUArrays" ComponentArraysKernelAbstractionsExt = "KernelAbstractions" + ComponentArraysMooncakeExt = "Mooncake" ComponentArraysOptimisersExt = "Optimisers" ComponentArraysReactantExt = "Reactant" ComponentArraysRecursiveArrayToolsExt = "RecursiveArrayTools" @@ -405,6 +417,7 @@ version = "0.15.25" [deps.ComponentArrays.weakdeps] GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" Optimisers = "3bd65402-5787-11e9-1adc-39752487f4e2" Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" @@ -434,15 +447,15 @@ version = "0.2.3" [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "d9d26935a0bcffc87d2613ce14c527c99fc543fd" +git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.5.0" +version = "2.5.1" [[deps.Conda]] deps = ["Downloads", "JSON", "VersionParsing"] -git-tree-sha1 = "b19db3927f0db4151cb86d073689f2428e524576" +git-tree-sha1 = "8f06b0cfa4c514c7b9546756dbae91fcfbc92dc9" uuid = "8f4d0f93-b110-5947-807f-2305c1781a2d" -version = "1.10.2" +version = "1.10.3" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -451,9 +464,9 @@ uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" version = "0.1.2" [[deps.ConstructionBase]] -git-tree-sha1 = "76219f1ed5771adbb096743bff43fb5fdd4c1157" +git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.8" +version = "1.6.0" weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] @@ -507,10 +520,10 @@ uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" version = "1.16.0" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" +deps = ["OrderedCollections"] +git-tree-sha1 = "e86f4a2805f7f19bec5129bc9150c38208e5dc23" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.20" +version = "0.19.4" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -520,17 +533,13 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" [[deps.Dbus_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "fc173b380865f70627d7dd1190dc2fce6cc105af" +git-tree-sha1 = "473e9afc9cf30814eb67ffa5f2db7df82c3ad9fd" uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" -version = "1.14.10+0" - -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" +version = "1.16.2+0" [[deps.DelimitedFiles]] deps = ["Mmap"] @@ -539,22 +548,24 @@ uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" version = "1.9.1" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "Statistics", "TruncatedStacktraces"] -git-tree-sha1 = "615e8358608628b9768275f4bd8c237724e72f08" +deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "803d463050fae6121f5d15fd449e9538cb993ad9" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.164.2" +version = "6.214.1" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" DiffEqBaseChainRulesCoreExt = "ChainRulesCore" - DiffEqBaseDistributionsExt = "Distributions" + DiffEqBaseDynamicQuantitiesExt = "DynamicQuantities" DiffEqBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] + DiffEqBaseFlexUnitsExt = "FlexUnits" DiffEqBaseForwardDiffExt = ["ForwardDiff"] DiffEqBaseGTPSAExt = "GTPSA" DiffEqBaseGeneralizedGeneratedExt = "GeneralizedGenerated" DiffEqBaseMPIExt = "MPI" DiffEqBaseMeasurementsExt = "Measurements" DiffEqBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" + DiffEqBaseMooncakeExt = "Mooncake" DiffEqBaseReverseDiffExt = "ReverseDiff" DiffEqBaseSparseArraysExt = "SparseArrays" DiffEqBaseTrackerExt = "Tracker" @@ -564,32 +575,40 @@ version = "6.164.2" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" + DynamicQuantities = "06fc5a27-2a28-4c7c-a15d-362465fb6821" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FlexUnits = "76e01b6b-c995-4ce6-8559-91e72a3d4e95" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" GeneralizedGenerated = "6b9d7cbe-bcb9-11e9-073f-15a7a543e2eb" MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.DiffEqCallbacks]] -deps = ["ConcreteStructs", "DataStructures", "DiffEqBase", "DifferentiationInterface", "Functors", "LinearAlgebra", "Markdown", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "c4966e57a993a181b6d613cf0d267c46fe49139d" +deps = ["ConcreteStructs", "DataStructures", "DiffEqBase", "DifferentiationInterface", "LinearAlgebra", "Markdown", "PrecompileTools", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] +git-tree-sha1 = "51f445c25b80c26c83c61520cde214adf8c05227" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "4.3.0" +version = "4.17.0" +weakdeps = ["Functors"] + + [deps.DiffEqCallbacks.extensions] + DiffEqCallbacksFunctorsExt = "Functors" [[deps.DiffEqNoiseProcess]] -deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "516d553f5deee7c55b2945b5edf05b6542837887" +deps = ["CommonSolve", "DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "PoissonRandom", "QuadGK", "Random", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] +git-tree-sha1 = "5b5fe6eb9e994ff0de4e84fe149b03c706fd6403" uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" -version = "5.24.1" -weakdeps = ["ReverseDiff"] +version = "5.31.0" +weakdeps = ["Optim", "ReverseDiff"] [deps.DiffEqNoiseProcess.extensions] + DiffEqNoiseProcessOptimExt = "Optim" DiffEqNoiseProcessReverseDiffExt = "ReverseDiff" [[deps.DiffResults]] @@ -606,9 +625,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "479214d2988a837e6d21ac38afdcb03cb2d0994e" +git-tree-sha1 = "d0250552e42bf7cc36479fd38a6e30004c9e8c2b" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.6.43" +version = "0.7.17" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -618,11 +637,13 @@ version = "0.6.43" DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceGPUArraysCoreExt = ["GPUArraysCore", "Adapt"] DifferentiationInterfaceGTPSAExt = "GTPSA" DifferentiationInterfaceMooncakeExt = "Mooncake" - DifferentiationInterfacePolyesterForwardDiffExt = "PolyesterForwardDiff" + DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" DifferentiationInterfaceStaticArraysExt = "StaticArrays" DifferentiationInterfaceSymbolicsExt = "Symbolics" @@ -630,6 +651,7 @@ version = "0.6.43" DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] [deps.DifferentiationInterface.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" @@ -639,11 +661,13 @@ version = "0.6.43" FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" @@ -652,9 +676,9 @@ version = "0.6.43" [[deps.DispatchDoctor]] deps = ["MacroTools", "Preferences"] -git-tree-sha1 = "f311fe66bfe4e38b2f1c8d1081f06920092b57aa" +git-tree-sha1 = "42cd00edaac86f941815fe557c1d01e11913e07c" uuid = "8d63f2c5-f18a-4cf2-ba9d-b3f60fc568c8" -version = "0.4.19" +version = "0.4.28" weakdeps = ["ChainRulesCore", "EnzymeCore"] [deps.DispatchDoctor.extensions] @@ -664,12 +688,13 @@ weakdeps = ["ChainRulesCore", "EnzymeCore"] [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "03aa5d44647eaec98e1920635cdfed5d5560a8b9" +git-tree-sha1 = "e421c1938fafab0165b04dc1a9dbe2a26272952c" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.117" +version = "0.25.125" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -682,22 +707,23 @@ version = "0.25.117" Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +git-tree-sha1 = "7442a5dfe1ebb773c29cc2962a8980f47221d76c" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" +version = "0.9.5" [[deps.DomainSets]] -deps = ["CompositeTypes", "IntervalSets", "LinearAlgebra", "Random", "StaticArrays"] -git-tree-sha1 = "a7e9f13f33652c533d49868a534bfb2050d1365f" +deps = ["CompositeTypes", "FunctionMaps", "IntervalSets", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "4599e0cd684f3ff6cbbab73c77553a3d01a8d74d" uuid = "5b8099bc-c8ec-5219-889f-1d9e522a28bf" -version = "0.7.15" +version = "0.7.18" [deps.DomainSets.extensions] DomainSetsMakieExt = "Makie" + DomainSetsRandomExt = "Random" [deps.DomainSets.weakdeps] Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] @@ -705,42 +731,47 @@ uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.6.0" [[deps.DynamicPolynomials]] -deps = ["Future", "LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Reexport", "Test"] -git-tree-sha1 = "9a3ae38b460449cc9e7dd0cfb059c76028724627" +deps = ["LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Reexport", "StarAlgebras", "Test"] +git-tree-sha1 = "5bfabc3827dfdd164359bad6800c115a81280c00" uuid = "7c1d4256-1411-5781-91ec-d7bc3513ac07" -version = "0.6.1" +version = "0.6.6" [[deps.DynamicQuantities]] -deps = ["DispatchDoctor", "TestItems", "Tricks"] -git-tree-sha1 = "5bf641265806eb2b4f15bb582edba53814ca738a" +deps = ["DispatchDoctor", "PrecompileTools", "TestItems", "Tricks"] +git-tree-sha1 = "7b098159d57dd03cb83fb5173cfba462d1b5e2de" uuid = "06fc5a27-2a28-4c7c-a15d-362465fb6821" -version = "1.5.1" +version = "1.12.3" [deps.DynamicQuantities.extensions] DynamicQuantitiesLinearAlgebraExt = "LinearAlgebra" DynamicQuantitiesMeasurementsExt = "Measurements" + DynamicQuantitiesRecursiveArrayToolsExt = "RecursiveArrayTools" + DynamicQuantitiesSciMLBaseExt = "SciMLBase" DynamicQuantitiesScientificTypesExt = "ScientificTypes" DynamicQuantitiesUnitfulExt = "Unitful" [deps.DynamicQuantities.weakdeps] LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" + SciMLBase = "0bca4576-84f4-4d90-8ffe-ffa030f20462" ScientificTypes = "321657f4-b219-11e9-178b-2701a2544e81" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" +git-tree-sha1 = "c49898e8438c828577f04b92fc9368c388ac783c" uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" +version = "1.0.7" [[deps.EnzymeCore]] -git-tree-sha1 = "0cdb7af5c39e92d78a0ee8d0a447d32f7593137e" +git-tree-sha1 = "c6ee69ee502060982d12dbaaf3d8fcb4e835a0d1" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.8.8" -weakdeps = ["Adapt"] +version = "0.8.20" +weakdeps = ["Adapt", "ChainRulesCore"] [deps.EnzymeCore.extensions] AdaptExt = "Adapt" + EnzymeCoreChainRulesCoreExt = "ChainRulesCore" [[deps.EpollShim_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -756,15 +787,20 @@ version = "0.1.11" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d55dffd9ae73ff72f1c0482454dcf2ec6c6c4a63" +git-tree-sha1 = "8f05e9a2e7c2e3eb524102bb2926c5743c07fbe1" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.6.5+0" +version = "2.8.0+0" [[deps.ExprTools]] git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" version = "0.1.10" +[[deps.ExpressionExplorer]] +git-tree-sha1 = "5f1c005ed214356bbe41d442cc1ccd416e510b7e" +uuid = "21656369-7473-754a-2065-74616d696c43" +version = "1.1.4" + [[deps.ExproniconLite]] git-tree-sha1 = "c13f0b150373771b0fdc1713c97860f8df12e6c2" uuid = "55351af7-c7e9-48d6-89ff-24e801d99491" @@ -772,33 +808,44 @@ version = "0.10.14" [[deps.FFMPEG]] deps = ["FFMPEG_jll"] -git-tree-sha1 = "53ebe7511fa11d33bec688a9178fac4e49eeee00" +git-tree-sha1 = "95ecf07c2eea562b5adbd0696af6db62c0f52560" uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.2" +version = "0.4.5" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libva_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "cac41ca6b2d399adfc95e51240566f8a60a80806" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.4+1" +version = "8.1.0+0" + +[[deps.FFTA]] +deps = ["AbstractFFTs", "DocStringExtensions", "LinearAlgebra", "MuladdMacro", "Primes", "Random", "Reexport"] +git-tree-sha1 = "65e55303b72f4a567a51b174dd2c47496efeb95a" +uuid = "b86e33f2-c0db-4aa1-a6e0-ab43e668529e" +version = "0.3.1" [[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "7de7c78d681078f027389e067864a8d53bd7c3c9" +deps = ["AbstractFFTs", "FFTW_jll", "Libdl", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] +git-tree-sha1 = "97f08406df914023af55ade2f843c39e99c5d969" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.8.1" +version = "1.10.0" [[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4d81ed14783ec49ce9f2e168208a12ce1815aa25" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6866aec60ef98e3164cd8d6855225684207e9dff" uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+3" +version = "3.3.12+0" [[deps.FastBroadcast]] -deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "ab1b34570bcdf272899062e1a56285a53ecaae08" +deps = ["ArrayInterface", "LinearAlgebra"] +git-tree-sha1 = "7feeed2c9a7fa272189a5561bebf0c4ccaedb6ec" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.3.5" +version = "1.3.2" +weakdeps = ["Polyester", "Static"] + + [deps.FastBroadcast.extensions] + FastBroadcastPolyesterExt = "Polyester" + FastBroadcastStaticExt = "Static" [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" @@ -806,15 +853,16 @@ uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" version = "0.3.2" [[deps.FastPower]] -git-tree-sha1 = "58c3431137131577a7c379d00fea00be524338fb" +git-tree-sha1 = "862831f78c7a48681a074ecc9aac09f2de563f71" uuid = "a4df4552-cc26-4903-aec0-212e50a0e84b" -version = "1.1.1" +version = "1.3.1" [deps.FastPower.extensions] FastPowerEnzymeExt = "Enzyme" FastPowerForwardDiffExt = "ForwardDiff" FastPowerMeasurementsExt = "Measurements" FastPowerMonteCarloMeasurementsExt = "MonteCarloMeasurements" + FastPowerMooncakeExt = "Mooncake" FastPowerReverseDiffExt = "ReverseDiff" FastPowerTrackerExt = "Tracker" @@ -823,34 +871,38 @@ version = "1.1.1" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" +version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] -git-tree-sha1 = "6a70198746448456524cb442b8af316927ff3e1a" +git-tree-sha1 = "2f979084d1e13948a3352cf64a25df6bd3b4dca3" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.13.0" -weakdeps = ["PDMats", "SparseArrays", "Statistics"] +version = "1.16.0" +weakdeps = ["PDMats", "SparseArrays", "StaticArrays", "Statistics"] [deps.FillArrays.extensions] FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" + FillArraysStaticArraysExt = "StaticArrays" FillArraysStatisticsExt = "Statistics" [[deps.FindFirstFunctions]] -git-tree-sha1 = "670e1d9ceaa4a3161d32fe2d2fb2177f8d78b330" +deps = ["PrecompileTools"] +git-tree-sha1 = "27b495de668ccea58de6b06d6d13181396598ea0" uuid = "64ca27bc-2ba2-4a57-88aa-44e436879224" -version = "1.4.1" +version = "1.8.0" [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "f089ab1f834470c525562030c8cfde4025d5e915" +git-tree-sha1 = "f7017a4f337f8df189fcce98e32b67a1298a2115" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.27.0" +version = "2.31.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -872,9 +924,9 @@ version = "0.8.5" [[deps.Fontconfig_jll]] deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] -git-tree-sha1 = "21fac3c77d7b5a9fc03b0ec503aa1a6392c34d2b" +git-tree-sha1 = "f85dac9a96a01087df6e3a749840015a0ca3817d" uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.15.0+0" +version = "2.17.1+0" [[deps.Format]] git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" @@ -883,9 +935,9 @@ version = "1.3.7" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "a2df1b776752e3f344e5116c06d75a10436ab853" +git-tree-sha1 = "cddeab6487248a39dae1a960fff0ac17b2a28888" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.38" +version = "1.3.3" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -893,15 +945,21 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "786e968a8d2fb167f2e4880baba62e0e26bd8e4e" +git-tree-sha1 = "70329abc09b886fd2c5d94ad2d9527639c421e3e" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.3+1" +version = "2.14.3+1" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "846f7026a9decf3679419122b49f8a1fdb48d2d5" +git-tree-sha1 = "7a214fdac5ed5f59a22c2d9a885a16da1c74bbc7" uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.16+0" +version = "1.0.17+0" + +[[deps.FunctionMaps]] +deps = ["CompositeTypes", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "31bd99a57edf98990d1c21486032963955450e8d" +uuid = "a85aefff-f8ca-4649-a888-c8e5398bc76c" +version = "0.1.2" [[deps.FunctionWrappers]] git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" @@ -923,18 +981,13 @@ version = "0.5.2" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" +version = "1.11.0" [[deps.GLFW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] -git-tree-sha1 = "fcb0584ff34e25155876418979d4c8971243bb89" +git-tree-sha1 = "9e0fb9e54594c47f278d75063980e43066e26e20" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.4.0+2" - -[[deps.GPUArrays]] -deps = ["Adapt", "GPUArraysCore", "KernelAbstractions", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "ScopedValues", "Serialization", "Statistics"] -git-tree-sha1 = "eea7b3a1964b4de269bb380462a9da604be7fcdb" -uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "11.2.2" +version = "3.4.1+1" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -944,62 +997,82 @@ version = "0.2.0" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Qt6Wayland_jll", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] -git-tree-sha1 = "0ff136326605f8e06e9bcf085a356ab312eef18a" +git-tree-sha1 = "44716a1a667cb867ee0e9ec8edc31c3e4aa5afdc" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.73.13" +version = "0.73.24" +weakdeps = ["IJulia"] + + [deps.GR.extensions] + IJuliaExt = "IJulia" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "9cb62849057df859575fc1dda1e91b82f8609709" +git-tree-sha1 = "be8a1b8065959e24fdc1b51402f39f3b6f0f6653" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.73.13+0" +version = "0.73.24+0" [[deps.GenericSchur]] deps = ["LinearAlgebra", "Printf"] -git-tree-sha1 = "af49a0851f8113fcfae2ef5027c6d49d0acec39b" +git-tree-sha1 = "a694e2a57394e409f7a11ee0977362a9fafcb8c7" uuid = "c145ed77-6b09-5dd9-b285-bf645a82121e" -version = "0.5.4" +version = "0.5.6" + +[[deps.GettextRuntime_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", 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"Random", "SoftGlobalScope", "Test", "UUIDs", "ZMQ"] -git-tree-sha1 = "1b1299f7d6617291f3d260e9f5b0250afdaac8c0" +deps = ["Base64", "Conda", "Dates", "InteractiveUtils", "Logging", "Markdown", "Pkg", "PrecompileTools", "Printf", "REPL", "Random", "SHA", "Sockets", "UUIDs", "ZMQ"] +git-tree-sha1 = "102656c4efc9737f892e1bca7e66ae374c650740" uuid = "7073ff75-c697-5162-941a-fcdaad2a7d2a" -version = "1.26.0" +version = "1.34.4" + + [deps.IJulia.extensions] + IJuliaPythonCallExt = "PythonCall" + IJuliaReviseExt = "Revise" + + [deps.IJulia.weakdeps] + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + Revise = "295af30f-e4ad-537b-8983-00126c2a3abe" [[deps.IRTools]] deps = ["InteractiveUtils", "MacroTools"] -git-tree-sha1 = "950c3717af761bc3ff906c2e8e52bd83390b6ec2" +git-tree-sha1 = "57e9ce6cf68d0abf5cb6b3b4abf9bedf05c939c0" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.14" +version = "0.4.15" [[deps.IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" uuid = 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IntegralsZygoteExt = ["Zygote", "ChainRulesCore"] [deps.Integrals.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" Arblib = "fb37089c-8514-4489-9461-98f9c8763369" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" Cuba = "8a292aeb-7a57-582c-b821-06e4c11590b1" Cubature = "667455a9-e2ce-5579-9412-b964f529a492" + DifferentiationInterface = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" FastGaussQuadrature = "442a2c76-b920-505d-bb47-c5924d526838" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" MCIntegration = "ea1e2de9-7db7-4b42-91ee-0cd1bf6df167" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] -git-tree-sha1 = "0f14a5456bdc6b9731a5682f439a672750a09e48" +git-tree-sha1 = "ec1debd61c300961f98064cfb21287613ad7f303" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2025.0.4+0" +version = "2025.2.0+0" [[deps.InteractiveUtils]] deps = 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+ +[[deps.JuliaSyntax]] +git-tree-sha1 = "937da4713526b96ac9a178e2035019d3b78ead4a" +uuid = "70703baa-626e-46a2-a12c-08ffd08c73b4" +version = "0.4.10" [[deps.JumpProcesses]] -deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "Setfield", "StaticArrays", "SymbolicIndexingInterface", "UnPack"] -git-tree-sha1 = "3ba034493e21efc9ba61268dc0faa0c383bb76a5" +deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "PoissonRandom", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "SymbolicIndexingInterface"] +git-tree-sha1 = "2a8e5b9b90ef0da05f61904d0a39a7b1c0a83310" uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" -version = "9.14.2" -weakdeps = ["FastBroadcast"] +version = "9.28.0" +weakdeps = ["Adapt", "KernelAbstractions", "OrdinaryDiffEqCore"] + + [deps.JumpProcesses.extensions] + JumpProcessesKernelAbstractionsExt = ["Adapt", "KernelAbstractions"] + JumpProcessesOrdinaryDiffEqCoreExt = "OrdinaryDiffEqCore" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "MacroTools", "PrecompileTools", "Requires", "StaticArrays", "UUIDs"] -git-tree-sha1 = "80d268b2f4e396edc5ea004d1e0f569231c71e9e" +git-tree-sha1 = "f2e76d3ced51a2a9e185abc0b97494c7273f649f" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.34" +version = "0.9.41" weakdeps = ["EnzymeCore", "LinearAlgebra", "SparseArrays"] [deps.KernelAbstractions.extensions] @@ -1238,22 +1319,22 @@ weakdeps = ["EnzymeCore", "LinearAlgebra", "SparseArrays"] SparseArraysExt = "SparseArrays" [[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "7d703202e65efa1369de1279c162b915e245eed1" +deps = ["Distributions", "DocStringExtensions", "FFTA", "Interpolations", "StatsBase"] +git-tree-sha1 = "4260cfc991b8885bf747801fb60dd4503250e478" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.9" +version = "0.6.11" [[deps.Krylov]] deps = ["LinearAlgebra", "Printf", "SparseArrays"] -git-tree-sha1 = "b29d37ce30fa401a4563b18880ab91f979a29734" +git-tree-sha1 = "c4d19f51afc7ba2afbe32031b8f2d21b11c9e26e" uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" -version = "0.9.10" +version = "0.10.6" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "170b660facf5df5de098d866564877e119141cbd" +git-tree-sha1 = "059aabebaa7c82ccb853dd4a0ee9d17796f7e1bc" uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.2+0" +version = "3.100.3+0" [[deps.LBFGSB]] deps = ["L_BFGS_B_jll"] @@ -1263,39 +1344,15 @@ version = "0.4.1" [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "aaafe88dccbd957a8d82f7d05be9b69172e0cee3" +git-tree-sha1 = "17b94ecafcfa45e8360a4fc9ca6b583b049e4e37" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "4.0.1+0" - -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Unicode"] -git-tree-sha1 = "5fcfea6df2ff3e4da708a40c969c3812162346df" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "9.2.0" - - [deps.LLVM.extensions] - BFloat16sExt = "BFloat16s" - - [deps.LLVM.weakdeps] - BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "4b5ad6a4ffa91a00050a964492bc4f86bb48cea0" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.35+0" +version = "4.1.0+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "78211fb6cbc872f77cad3fc0b6cf647d923f4929" +git-tree-sha1 = "eb62a3deb62fc6d8822c0c4bef73e4412419c5d8" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "18.1.7+0" - -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "1c602b1127f4751facb671441ca72715cc95938a" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.3+0" +version = "18.1.8+0" [[deps.L_BFGS_B_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1309,20 +1366,22 @@ uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" version = "1.4.0" [[deps.Latexify]] -deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] -git-tree-sha1 = "cd714447457c660382fe634710fb56eb255ee42e" +deps = ["Format", "Ghostscript_jll", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] +git-tree-sha1 = "44f93c47f9cd6c7e431f2f2091fcba8f01cd7e8f" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.6" +version = "0.16.10" [deps.Latexify.extensions] DataFramesExt = "DataFrames" SparseArraysExt = "SparseArrays" SymEngineExt = "SymEngine" + TectonicExt = "tectonic_jll" [deps.Latexify.weakdeps] DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" + tectonic_jll = "d7dd28d6-a5e6-559c-9131-7eb760cdacc5" [[deps.LatticeRules]] deps = ["Random"] @@ -1336,33 +1395,16 @@ git-tree-sha1 = "a9eaadb366f5493a5654e843864c13d8b107548c" uuid = "10f19ff3-798f-405d-979b-55457f8fc047" version = "0.1.17" -[[deps.LazyArrays]] -deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "866ce84b15e54d758c11946aacd4e5df0e60b7a3" -uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "2.6.1" - - [deps.LazyArrays.extensions] - LazyArraysBandedMatricesExt = "BandedMatrices" - LazyArraysBlockArraysExt = "BlockArrays" - LazyArraysBlockBandedMatricesExt = "BlockBandedMatrices" - LazyArraysStaticArraysExt = "StaticArrays" - - [deps.LazyArrays.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" +version = "1.11.0" [[deps.LeftChildRightSiblingTrees]] deps = ["AbstractTrees"] -git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" +git-tree-sha1 = "95ba48564903b43b2462318aa243ee79d81135ff" uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.2.0" +version = "0.2.1" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] @@ -1372,16 +1414,17 @@ version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.4.0+0" +version = "8.6.0+0" [[deps.LibGit2]] deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +version = "1.11.0" [[deps.LibGit2_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.6.4+0" +version = "1.7.2+0" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] @@ -1390,30 +1433,19 @@ version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" +version = "1.11.0" [[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "27ecae93dd25ee0909666e6835051dd684cc035e" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c8da7e6a91781c41a863611c7e966098d783c57a" uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+2" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll"] -git-tree-sha1 = "8be878062e0ffa2c3f67bb58a595375eda5de80b" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.11.0+0" +version = "3.4.7+0" [[deps.Libglvnd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "ff3b4b9d35de638936a525ecd36e86a8bb919d11" +git-tree-sha1 = "d36c21b9e7c172a44a10484125024495e2625ac0" uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.7.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "df37206100d39f79b3376afb6b9cee4970041c61" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.51.1+0" +version = "1.7.1+1" [[deps.Libiconv_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1423,95 +1455,125 @@ version = "1.18.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "89211ea35d9df5831fca5d33552c02bd33878419" +git-tree-sha1 = "cc3ad4faf30015a3e8094c9b5b7f19e85bdf2386" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.40.3+0" +version = "2.42.0+0" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "4ab7581296671007fc33f07a721631b8855f4b1d" +git-tree-sha1 = "f04133fe05eff1667d2054c53d59f9122383fe05" uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.7.1+0" +version = "4.7.2+0" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e888ad02ce716b319e6bdb985d2ef300e7089889" +git-tree-sha1 = "d620582b1f0cbe2c72dd1d5bd195a9ce73370ab1" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.40.3+0" +version = "2.42.0+0" [[deps.LineSearch]] -deps = ["ADTypes", "CommonSolve", "ConcreteStructs", "FastClosures", "LinearAlgebra", "MaybeInplace", "SciMLBase", "SciMLJacobianOperators", "StaticArraysCore"] -git-tree-sha1 = "97d502765cc5cf3a722120f50da03c2474efce04" +deps = ["ADTypes", "CommonSolve", "ConcreteStructs", "FastClosures", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "SciMLBase", "SciMLJacobianOperators", "StaticArraysCore"] +git-tree-sha1 = "fd58a77c92e7c8f1db25c9839127d52943a49349" uuid = "87fe0de2-c867-4266-b59a-2f0a94fc965b" -version = "0.1.4" +version = "0.1.9" weakdeps = ["LineSearches"] [deps.LineSearch.extensions] LineSearchLineSearchesExt = "LineSearches" [[deps.LineSearches]] -deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"] -git-tree-sha1 = "e4c3be53733db1051cc15ecf573b1042b3a712a1" +deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Printf"] +git-tree-sha1 = "9ea3422d03222c6de679934d1c08f0a99405aa03" uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.3.0" +version = "7.5.1" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +version = "1.11.0" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "6e975dea0fc1825ef3bc83c11281fdf745a69a43" +deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] +git-tree-sha1 = "42b5cb44317e89ef75dd841c9c8eba9045bf9ff0" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "3.4.0" +version = "3.75.0" [deps.LinearSolve.extensions] + LinearSolveAMDGPUExt = "AMDGPU" + LinearSolveAlgebraicMultigridExt = "AlgebraicMultigrid" + LinearSolveBLISExt = ["blis_jll", "LAPACK_jll"] LinearSolveBandedMatricesExt = "BandedMatrices" LinearSolveBlockDiagonalsExt = "BlockDiagonals" LinearSolveCUDAExt = "CUDA" LinearSolveCUDSSExt = "CUDSS" - LinearSolveEnzymeExt = "EnzymeCore" + LinearSolveCUSOLVERRFExt = ["CUSOLVERRF", "SparseArrays"] + LinearSolveChainRulesCoreExt = "ChainRulesCore" + LinearSolveCliqueTreesExt = ["CliqueTrees", "SparseArrays"] + LinearSolveElementalExt = "Elemental" + LinearSolveEnzymeExt = ["EnzymeCore", "SparseArrays"] LinearSolveFastAlmostBandedMatricesExt = "FastAlmostBandedMatrices" LinearSolveFastLapackInterfaceExt = "FastLapackInterface" + LinearSolveForwardDiffExt = "ForwardDiff" + LinearSolveGinkgoExt = ["Ginkgo", "SparseArrays"] LinearSolveHYPREExt = "HYPRE" LinearSolveIterativeSolversExt = "IterativeSolvers" LinearSolveKernelAbstractionsExt = "KernelAbstractions" LinearSolveKrylovKitExt = "KrylovKit" LinearSolveMetalExt = "Metal" + LinearSolveMooncakeExt = "Mooncake" + LinearSolvePETScCSRExt = ["PETSc", "SparseArrays", "SparseMatricesCSR"] + LinearSolvePETScExt = ["PETSc", "SparseArrays"] + LinearSolvePETScMPIExt = ["PETSc", "PartitionedArrays", "SparseArrays", "SparseMatricesCSR"] + LinearSolveParUExt = ["ParU_jll", "SparseArrays"] LinearSolvePardisoExt = ["Pardiso", "SparseArrays"] LinearSolveRecursiveFactorizationExt = "RecursiveFactorization" LinearSolveSparseArraysExt = "SparseArrays" LinearSolveSparspakExt = ["SparseArrays", "Sparspak"] [deps.LinearSolve.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + AlgebraicMultigrid = "2169fc97-5a83-5252-b627-83903c6c433c" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + CUSOLVERRF = "a8cc9031-bad2-4722-94f5-40deabb4245c" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" + Elemental = "902c3f28-d1ec-5e7e-8399-a24c3845ee38" EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" FastLapackInterface = "29a986be-02c6-4525-aec4-84b980013641" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Ginkgo = "4c8bd3c9-ead9-4b5e-a625-08f1338ba0ec" HYPRE = "b5ffcf37-a2bd-41ab-a3da-4bd9bc8ad771" IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" + LAPACK_jll = "51474c39-65e3-53ba-86ba-03b1b862ec14" Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + PETSc = "ace2c81b-2b5f-4b1e-a30d-d662738edfe0" + ParU_jll = "9e0b026c-e8ce-559c-a2c4-6a3d5c955bc9" Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" + PartitionedArrays = "5a9dfac6-5c52-46f7-8278-5e2210713be9" RecursiveFactorization = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseMatricesCSR = "a0a7dd2c-ebf4-11e9-1f05-cf50bc540ca1" Sparspak = "e56a9233-b9d6-4f03-8d0f-1825330902ac" + blis_jll = "6136c539-28a5-5bf0-87cc-b183200dce32" [[deps.LogDensityProblems]] deps = ["ArgCheck", "DocStringExtensions", "Random"] -git-tree-sha1 = "4e0128c1590d23a50dcdb106c7e2dbca99df85c0" +git-tree-sha1 = "d9625f27ded4ad726ceca7819394a4cc77ed25b3" uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.2" +version = "2.2.0" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems"] -git-tree-sha1 = "a10e798ac8c44fe1594ad7d6e02898e16e4eafa3" +git-tree-sha1 = "7b83f3ad0a8105f79a067cafbfd124827bb398d0" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.13.0" +version = "1.13.1" [deps.LogDensityProblemsAD.extensions] LogDensityProblemsADADTypesExt = "ADTypes" @@ -1553,32 +1615,35 @@ version = "0.3.29" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" +version = "1.11.0" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] -git-tree-sha1 = "f02b56007b064fbfddb4c9cd60161b6dd0f40df3" +git-tree-sha1 = "f00544d95982ea270145636c181ceda21c4e2575" uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.1.0" +version = "1.2.0" [[deps.Lux]] -deps = ["ADTypes", "Adapt", "ArgCheck", "ArrayInterface", "ChainRulesCore", "Compat", "ConcreteStructs", "DispatchDoctor", "EnzymeCore", "FastClosures", "ForwardDiff", "Functors", "GPUArraysCore", "LinearAlgebra", "LuxCore", "LuxLib", "MLDataDevices", "MacroTools", "Markdown", "NNlib", "Optimisers", "Preferences", "Random", "Reexport", "SIMDTypes", "Setfield", "Static", "StaticArraysCore", "Statistics", "WeightInitializers"] -git-tree-sha1 = "b1bb7f8718117221f4125d11c0c0fb6dd5ab2c0c" +deps = ["ADTypes", "Adapt", "ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DiffResults", "DispatchDoctor", "EnzymeCore", "FastClosures", "ForwardDiff", "Functors", "GPUArraysCore", "LinearAlgebra", "LuxCore", "LuxLib", "MLDataDevices", "MacroTools", "Markdown", "NNlib", "Optimisers", "PrecompileTools", "Preferences", "Random", "ReactantCore", "Reexport", "SciMLPublic", "Setfield", "Static", "StaticArraysCore", "Statistics", "UUIDs", "WeightInitializers"] +git-tree-sha1 = "b7654d9b1144792d7fa165add2e07434329e3193" uuid = "b2108857-7c20-44ae-9111-449ecde12c47" -version = "1.9.0" +version = "1.31.4" [deps.Lux.extensions] - LuxComponentArraysExt = "ComponentArrays" - LuxEnzymeExt = "Enzyme" - LuxFluxExt = "Flux" - LuxLossFunctionsExt = "LossFunctions" - LuxMLUtilsExt = "MLUtils" - LuxMPIExt = "MPI" - LuxMPINCCLExt = ["CUDA", "MPI", "NCCL"] - LuxReactantExt = ["Enzyme", "Reactant"] - LuxReverseDiffExt = ["FunctionWrappers", "ReverseDiff"] - LuxSimpleChainsExt = "SimpleChains" - LuxTrackerExt = "Tracker" - LuxZygoteExt = "Zygote" + ComponentArraysExt = "ComponentArrays" + EnzymeExt = "Enzyme" + FluxExt = "Flux" + GPUArraysExt = "GPUArrays" + LossFunctionsExt = "LossFunctions" + MLUtilsExt = "MLUtils" + MPIExt = "MPI" + MPINCCLExt = ["CUDA", "MPI", "NCCL"] + MooncakeExt = "Mooncake" + ReactantExt = ["Enzyme", "Reactant"] + ReverseDiffExt = ["FunctionWrappers", "ReverseDiff"] + SimpleChainsExt = "SimpleChains" + TrackerExt = "Tracker" + ZygoteExt = "Zygote" [deps.Lux.weakdeps] CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" @@ -1586,9 +1651,11 @@ version = "1.9.0" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" FunctionWrappers = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" + GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" LossFunctions = "30fc2ffe-d236-52d8-8643-a9d8f7c094a7" MLUtils = "f1d291b0-491e-4a28-83b9-f70985020b54" MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" NCCL = "3fe64909-d7a1-4096-9b7d-7a0f12cf0f6b" Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" @@ -1597,26 +1664,28 @@ version = "1.9.0" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.LuxCore]] -deps = ["Compat", "DispatchDoctor", "Random"] -git-tree-sha1 = "531ee8f55d96bf9693d051c587ff15c4d02cde9f" +deps = ["DispatchDoctor", "Random", "SciMLPublic"] +git-tree-sha1 = "9455b1e829d8dacad236143869be70b7fdb826b8" uuid = "bb33d45b-7691-41d6-9220-0943567d0623" -version = "1.2.3" +version = "1.5.3" [deps.LuxCore.extensions] - LuxCoreArrayInterfaceReverseDiffExt = ["ArrayInterface", "ReverseDiff"] - LuxCoreArrayInterfaceTrackerExt = ["ArrayInterface", "Tracker"] - LuxCoreChainRulesCoreExt = "ChainRulesCore" - LuxCoreEnzymeCoreExt = "EnzymeCore" - LuxCoreFunctorsExt = "Functors" - LuxCoreMLDataDevicesExt = ["Adapt", "MLDataDevices"] - LuxCoreReactantExt = "Reactant" - LuxCoreSetfieldExt = "Setfield" + ArrayInterfaceReverseDiffExt = ["ArrayInterface", "ReverseDiff"] + ArrayInterfaceTrackerExt = ["ArrayInterface", "Tracker"] + ChainRulesCoreExt = "ChainRulesCore" + EnzymeCoreExt = "EnzymeCore" + FluxExt = "Flux" + FunctorsExt = "Functors" + MLDataDevicesExt = ["Adapt", "MLDataDevices"] + ReactantExt = "Reactant" + SetfieldExt = "Setfield" [deps.LuxCore.weakdeps] Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" ArrayInterface = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" Functors = "d9f16b24-f501-4c13-a1f2-28368ffc5196" MLDataDevices = "7e8f7934-dd98-4c1a-8fe8-92b47a384d40" Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" @@ -1625,25 +1694,28 @@ version = "1.2.3" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.LuxLib]] -deps = ["ArrayInterface", "ChainRulesCore", "Compat", "CpuId", "DispatchDoctor", "EnzymeCore", "FastClosures", "ForwardDiff", "Functors", "Hwloc", "KernelAbstractions", "LinearAlgebra", "LuxCore", "MLDataDevices", "Markdown", "NNlib", "Polyester", "Preferences", "Random", "Reexport", "Static", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "a95eb6684f2eb3bec17ac0c12e6260273363b977" +deps = ["ArrayInterface", "CPUSummary", "ChainRulesCore", "DispatchDoctor", "EnzymeCore", "FastClosures", "Functors", "KernelAbstractions", "LinearAlgebra", "LuxCore", "MLDataDevices", "Markdown", "NNlib", "Preferences", "Random", "Reexport", "SciMLPublic", "Static", "StaticArraysCore", "Statistics", "UUIDs"] +git-tree-sha1 = "6a6453d556f7bc3870d797657636b1ad5f45fd27" uuid = "82251201-b29d-42c6-8e01-566dec8acb11" -version = "1.6.1" +version = "1.15.9" [deps.LuxLib.extensions] - LuxLibAppleAccelerateExt = "AppleAccelerate" - LuxLibBLISBLASExt = "BLISBLAS" - LuxLibCUDAExt = "CUDA" - LuxLibEnzymeExt = "Enzyme" - LuxLibLoopVectorizationExt = "LoopVectorization" - LuxLibMKLExt = "MKL" - LuxLibOctavianExt = ["Octavian", "LoopVectorization"] - LuxLibReactantExt = "Reactant" - LuxLibReverseDiffExt = "ReverseDiff" - LuxLibSLEEFPiratesExt = "SLEEFPirates" - LuxLibTrackerAMDGPUExt = ["AMDGPU", "Tracker"] - LuxLibTrackerExt = "Tracker" - LuxLibcuDNNExt = ["CUDA", "cuDNN"] + AppleAccelerateExt = "AppleAccelerate" + BLISBLASExt = "BLISBLAS" + CUDAExt = "CUDA" + CUDAForwardDiffExt = ["CUDA", "ForwardDiff"] + EnzymeExt = "Enzyme" + ForwardDiffExt = "ForwardDiff" + LoopVectorizationExt = ["LoopVectorization", "Polyester"] + MKLExt = "MKL" + OctavianExt = ["Octavian", "LoopVectorization"] + OneHotArraysExt = ["OneHotArrays"] + ReactantExt = ["Reactant", "ReactantCore"] + ReverseDiffExt = "ReverseDiff" + SLEEFPiratesExt = "SLEEFPirates" + TrackerAMDGPUExt = ["AMDGPU", "Tracker"] + TrackerExt = "Tracker" + cuDNNExt = ["CUDA", "cuDNN"] [deps.LuxLib.weakdeps] AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" @@ -1651,58 +1723,63 @@ version = "1.6.1" BLISBLAS = "6f275bd8-fec0-4d39-945b-7e95a765fa1e" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LoopVectorization = "bdcacae8-1622-11e9-2a5c-532679323890" MKL = "33e6dc65-8f57-5167-99aa-e5a354878fb2" Octavian = "6fd5a793-0b7e-452c-907f-f8bfe9c57db4" + OneHotArrays = "0b1bfda6-eb8a-41d2-88d8-f5af5cad476f" + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" + ReactantCore = "a3311ec8-5e00-46d5-b541-4f83e724a433" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SLEEFPirates = "476501e8-09a2-5ece-8869-fb82de89a1fa" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" [[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "cd7aee22384792c726e19f2a22dc060b886edded" +deps = ["AbstractMCMC", "AxisArrays", "DataAPI", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "060d6bc7cf60e621dfd056ed2c1a2db1e68db0fe" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.7" +version = "7.7.0" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "a586f05dd16a50c490ed95415b2a829b8cf5d57f" +git-tree-sha1 = "2f464b68e84673727b4e4216a6254fba7da5cf4e" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.14" +version = "0.3.17" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] -git-tree-sha1 = "5de60bc6cb3899cd318d80d627560fae2e2d99ae" +git-tree-sha1 = "282cadc186e7b2ae0eeadbd7a4dffed4196ae2aa" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2025.0.1+1" +version = "2025.2.0+0" [[deps.MLDataDevices]] -deps = ["Adapt", "Compat", "Functors", "Preferences", "Random"] -git-tree-sha1 = "1326836c4c845cfabc542b658c8686f0c31a9911" +deps = ["Adapt", "Functors", "Preferences", "Random", "SciMLPublic"] +git-tree-sha1 = "29b00f22be6fd821a214760f0224329f21998a05" uuid = "7e8f7934-dd98-4c1a-8fe8-92b47a384d40" -version = "1.9.1" +version = "1.17.10" [deps.MLDataDevices.extensions] - MLDataDevicesAMDGPUExt = "AMDGPU" - MLDataDevicesCUDAExt = "CUDA" - MLDataDevicesChainRulesCoreExt = "ChainRulesCore" - MLDataDevicesChainRulesExt = "ChainRules" - MLDataDevicesComponentArraysExt = "ComponentArrays" - MLDataDevicesFillArraysExt = "FillArrays" - MLDataDevicesGPUArraysExt = "GPUArrays" - MLDataDevicesMLUtilsExt = "MLUtils" - MLDataDevicesMetalExt = ["GPUArrays", "Metal"] - MLDataDevicesOneHotArraysExt = "OneHotArrays" - MLDataDevicesReactantExt = "Reactant" - MLDataDevicesRecursiveArrayToolsExt = "RecursiveArrayTools" - MLDataDevicesReverseDiffExt = "ReverseDiff" - MLDataDevicesSparseArraysExt = "SparseArrays" - MLDataDevicesTrackerExt = "Tracker" - MLDataDevicesZygoteExt = "Zygote" - MLDataDevicescuDNNExt = ["CUDA", "cuDNN"] - MLDataDevicesoneAPIExt = ["GPUArrays", "oneAPI"] + AMDGPUExt = "AMDGPU" + CUDAExt = "CUDA" + ChainRulesCoreExt = "ChainRulesCore" + ChainRulesExt = "ChainRules" + ComponentArraysExt = "ComponentArrays" + FillArraysExt = "FillArrays" + GPUArraysSparseArraysExt = ["GPUArrays", "SparseArrays"] + MLUtilsExt = "MLUtils" + MetalExt = ["GPUArrays", "Metal"] + OneHotArraysExt = "OneHotArrays" + OpenCLExt = ["GPUArrays", "OpenCL"] + ReactantExt = "Reactant" + RecursiveArrayToolsExt = "RecursiveArrayTools" + ReverseDiffExt = "ReverseDiff" + SparseArraysExt = "SparseArrays" + TrackerExt = "Tracker" + ZygoteExt = "Zygote" + cuDNNExt = ["CUDA", "cuDNN"] + oneAPIExt = ["GPUArrays", "oneAPI"] [deps.MLDataDevices.weakdeps] AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" @@ -1715,6 +1792,7 @@ version = "1.9.1" MLUtils = "f1d291b0-491e-4a28-83b9-f70985020b54" Metal = "dde4c033-4e86-420c-a63e-0dd931031962" OneHotArrays = "0b1bfda6-eb8a-41d2-88d8-f5af5cad476f" + OpenCL = "08131aa3-fb12-5dee-8b74-c09406e224a2" Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" @@ -1725,10 +1803,10 @@ version = "1.9.1" oneAPI = "8f75cd03-7ff8-4ecb-9b8f-daf728133b1b" [[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "ceaff6618408d0e412619321ae43b33b40c1a733" +deps = ["InteractiveUtils", "REPL", "Random", "ScientificTypesBase", "StatisticalTraits"] +git-tree-sha1 = "c275fae2e693206b4527dd9d2382aa15359ef3ed" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.11.0" +version = "1.12.1" [[deps.MLStyle]] git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8" @@ -1736,9 +1814,9 @@ uuid = "d8e11817-5142-5d16-987a-aa16d5891078" version = "0.4.17" [[deps.MacroTools]] -git-tree-sha1 = "72aebe0b5051e5143a079a4685a46da330a40472" +git-tree-sha1 = "1e0228a030642014fe5cfe68c2c0a818f9e3f522" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.15" +version = "0.5.16" [[deps.ManualMemory]] git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" @@ -1748,6 +1826,7 @@ version = "0.1.8" [[deps.Markdown]] deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +version = "1.11.0" [[deps.MaybeInplace]] deps = ["ArrayInterface", "LinearAlgebra", "MacroTools"] @@ -1761,25 +1840,19 @@ weakdeps = ["SparseArrays"] [[deps.MbedTLS]] deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] -git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" +git-tree-sha1 = "8785729fa736197687541f7053f6d8ab7fc44f92" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.9" +version = "1.1.10" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+1" +version = "2.28.6+0" [[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" +git-tree-sha1 = "b513cedd20d9c914783d8ad83d08120702bf2c77" uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" - -[[deps.MicroCollections]] -deps = ["Accessors", "BangBang", "InitialValues"] -git-tree-sha1 = "44d32db644e84c75dab479f1bc15ee76a1a3618f" -uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.2.0" +version = "0.3.3" [[deps.Missings]] deps = ["DataAPI"] @@ -1789,28 +1862,31 @@ version = "1.2.0" [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" +version = "1.11.0" [[deps.ModelingToolkit]] -deps = ["AbstractTrees", "ArrayInterface", "BlockArrays", "Combinatorics", "CommonSolve", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "DiffRules", "Distributed", "Distributions", "DocStringExtensions", "DomainSets", "DynamicQuantities", "EnumX", "ExprTools", "FindFirstFunctions", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "InteractiveUtils", "JuliaFormatter", "JumpProcesses", "Latexify", "Libdl", "LinearAlgebra", "MLStyle", "Moshi", "NaNMath", "NonlinearSolve", "OffsetArrays", "OrderedCollections", "PrecompileTools", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "URIs", "UnPack", "Unitful"] -git-tree-sha1 = "2a08947ba95676dd2df18241c06cab89dce5341e" +deps = ["ADTypes", "AbstractTrees", "ArrayInterface", "BlockArrays", "ChainRulesCore", "Combinatorics", "CommonSolve", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "DiffRules", "DifferentiationInterface", "Distributed", "Distributions", "DocStringExtensions", "DomainSets", "DynamicQuantities", "EnumX", "ExprTools", "FillArrays", "FindFirstFunctions", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "ImplicitDiscreteSolve", "InteractiveUtils", "JuliaFormatter", "JumpProcesses", "Latexify", "Libdl", "LinearAlgebra", "MLStyle", "Moshi", "NaNMath", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "URIs", "UnPack", "Unitful"] +git-tree-sha1 = "18a2e492c5206365b41310d08af5286fbec0a508" uuid = "961ee093-0014-501f-94e3-6117800e7a78" -version = "9.65.0" +version = "10.32.1" [deps.ModelingToolkit.extensions] MTKBifurcationKitExt = "BifurcationKit" - MTKChainRulesCoreExt = "ChainRulesCore" + MTKCasADiDynamicOptExt = "CasADi" MTKDeepDiffsExt = "DeepDiffs" MTKFMIExt = "FMI" MTKInfiniteOptExt = "InfiniteOpt" MTKLabelledArraysExt = "LabelledArrays" + MTKPyomoDynamicOptExt = "Pyomo" [deps.ModelingToolkit.weakdeps] BifurcationKit = "0f109fa4-8a5d-4b75-95aa-f515264e7665" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + CasADi = "c49709b8-5c63-11e9-2fb2-69db5844192f" DeepDiffs = "ab62b9b5-e342-54a8-a765-a90f495de1a6" FMI = "14a09403-18e3-468f-ad8a-74f8dda2d9ac" InfiniteOpt = "20393b10-9daf-11e9-18c9-8db751c92c57" LabelledArrays = "2ee39098-c373-598a-b85f-a56591580800" + Pyomo = "0e8e1daf-01b5-4eba-a626-3897743a3816" [[deps.MonteCarloIntegration]] deps = ["Distributions", "QuasiMonteCarlo", "Random"] @@ -1820,11 +1896,12 @@ version = "0.2.0" [[deps.MonteCarloMeasurements]] deps = ["Distributions", "GenericSchur", "LinearAlgebra", "MacroTools", "Random", "SLEEFPirates", "StaticArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "ad5de9cf94bedb16dc936f049391ae7f9240f521" +git-tree-sha1 = "5fa0ef6af2ff71912dd1675146b27818170a4753" uuid = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" -version = "1.4.5" +version = "1.5.2" [deps.MonteCarloMeasurements.extensions] + AccessorsExtraExt = "AccessorsExtra" ForwardDiffExt = "ForwardDiff" MakieExt = "Makie" MeasurementsExt = "Measurements" @@ -1832,6 +1909,7 @@ version = "1.4.5" UnitfulExt = "Unitful" [deps.MonteCarloMeasurements.weakdeps] + AccessorsExtra = "33016aad-b69d-45be-9359-82a41f556fd4" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" @@ -1840,13 +1918,13 @@ version = "1.4.5" [[deps.Moshi]] deps = ["ExproniconLite", "Jieko"] -git-tree-sha1 = "453de0fc2be3d11b9b93ca4d0fddd91196dcf1ed" +git-tree-sha1 = "53f817d3e84537d84545e0ad749e483412dd6b2a" uuid = "2e0e35c7-a2e4-4343-998d-7ef72827ed2d" -version = "0.3.5" +version = "0.3.7" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2023.1.10" +version = "2023.12.12" [[deps.MuladdMacro]] git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" @@ -1854,34 +1932,38 @@ uuid = "46d2c3a1-f734-5fdb-9937-b9b9aeba4221" version = "0.2.4" [[deps.MultivariatePolynomials]] -deps = ["ChainRulesCore", "DataStructures", "LinearAlgebra", "MutableArithmetics"] -git-tree-sha1 = "8d39779e29f80aa6c071e7ac17101c6e31f075d7" +deps = ["DataStructures", "LinearAlgebra", "MutableArithmetics", "StarAlgebras"] +git-tree-sha1 = "4838893d9b035c2f6967c0d533350e1755b58a70" uuid = "102ac46a-7ee4-5c85-9060-abc95bfdeaa3" -version = "0.5.7" +version = "0.5.19" +weakdeps = ["ChainRulesCore"] + + [deps.MultivariatePolynomials.extensions] + MultivariatePolynomialsChainRulesCoreExt = "ChainRulesCore" [[deps.Mustache]] deps = ["Printf", "Tables"] -git-tree-sha1 = "3b2db451a872b20519ebb0cec759d3d81a1c6bcb" +git-tree-sha1 = "3cbd5dda543bc59f2e482607ccf84b633724fc32" uuid = "ffc61752-8dc7-55ee-8c37-f3e9cdd09e70" -version = "1.0.20" +version = "1.0.21" [[deps.MutableArithmetics]] deps = ["LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "491bdcdc943fcbc4c005900d7463c9f216aabf4c" +git-tree-sha1 = "7c25249fc13a070f5ba433c50e21e22bb33c6fb0" uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" -version = "1.6.4" +version = "1.7.1" [[deps.NLSolversBase]] -deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] -git-tree-sha1 = "a0b464d183da839699f4c79e7606d9d186ec172c" +deps = ["ADTypes", "DifferentiationInterface", "Distributed", "FiniteDiff", "ForwardDiff"] +git-tree-sha1 = "25a6638571a902ecfb1ae2a18fc1575f86b1d4df" uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" -version = "7.8.3" +version = "7.10.0" [[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "e3d9a41f0e892d070d1a2a9569d73f29b3e321e3" +deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Random", "ScopedValues", "Statistics"] +git-tree-sha1 = "78cd28dbd5f03f99ccaba45c987107adcb61c115" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.28" +version = "0.9.34" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1890,6 +1972,7 @@ version = "0.9.28" NNlibEnzymeCoreExt = "EnzymeCore" NNlibFFTWExt = "FFTW" NNlibForwardDiffExt = "ForwardDiff" + NNlibMetalExt = "Metal" NNlibSpecialFunctionsExt = "SpecialFunctions" [deps.NNlib.weakdeps] @@ -1898,14 +1981,15 @@ version = "0.9.28" EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" FFTW = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b" cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" [[deps.NaNMath]] deps = ["OpenLibm_jll"] -git-tree-sha1 = "cc0a5deefdb12ab3a096f00a6d42133af4560d71" +git-tree-sha1 = "9b8215b1ee9e78a293f99797cd31375471b2bcae" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.1.2" +version = "1.1.3" [[deps.NaturalSort]] git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" @@ -1924,9 +2008,9 @@ version = "0.5.3" [[deps.NeuralPDE]] deps = ["ADTypes", "Adapt", "AdvancedHMC", "ArrayInterface", "ChainRulesCore", "ComponentArrays", "ConcreteStructs", "Cubature", "Distributions", "DocStringExtensions", "DomainSets", "ForwardDiff", "Functors", "Integrals", "IntervalSets", "LinearAlgebra", "LogDensityProblems", "Lux", "LuxCore", "MCMCChains", "MLDataDevices", "ModelingToolkit", "MonteCarloMeasurements", "NeuralOperators", "Optimisers", "Optimization", "OptimizationOptimisers", "Printf", "QuasiMonteCarlo", "Random", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Statistics", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "WeightInitializers", "Zygote"] -git-tree-sha1 = "ddc30ae6d6ea9561dde1e57e79bf2170b27eebb6" +git-tree-sha1 = "6713c23c8a2bdaaf9e1459e06ced7901b8285ced" uuid = "315f7962-48a3-4962-8226-d0f33b1235f0" -version = "5.18.0" +version = "5.20.0" [deps.NeuralPDE.extensions] NeuralPDETensorBoardLoggerExt = "TensorBoardLogger" @@ -1934,124 +2018,86 @@ version = "5.18.0" [deps.NeuralPDE.weakdeps] TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" -[[deps.NonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DiffEqBase", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseMatrixColorings", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "95def4e218a6832d158feafb9963be0337ea432c" -uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "4.4.0" - - [deps.NonlinearSolve.extensions] - NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" - NonlinearSolveFixedPointAccelerationExt = "FixedPointAcceleration" - NonlinearSolveLeastSquaresOptimExt = "LeastSquaresOptim" - NonlinearSolveMINPACKExt = "MINPACK" - NonlinearSolveNLSolversExt = "NLSolvers" - NonlinearSolveNLsolveExt = ["NLsolve", "LineSearches"] - NonlinearSolvePETScExt = ["PETSc", "MPI"] - NonlinearSolveSIAMFANLEquationsExt = "SIAMFANLEquations" - NonlinearSolveSpeedMappingExt = "SpeedMapping" - NonlinearSolveSundialsExt = "Sundials" - - [deps.NonlinearSolve.weakdeps] - FastLevenbergMarquardt = "7a0df574-e128-4d35-8cbd-3d84502bf7ce" - FixedPointAcceleration = "817d07cb-a79a-5c30-9a31-890123675176" - LeastSquaresOptim = "0fc2ff8b-aaa3-5acd-a817-1944a5e08891" - LineSearches = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" - MINPACK = "4854310b-de5a-5eb6-a2a5-c1dee2bd17f9" - MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" - NLSolvers = "337daf1e-9722-11e9-073e-8b9effe078ba" - NLsolve = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" - PETSc = "ace2c81b-2b5f-4b1e-a30d-d662738edfe0" - SIAMFANLEquations = "084e46ad-d928-497d-ad5e-07fa361a48c4" - SpeedMapping = 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"9323e063ce69851b28e5c96539b2e2024f9a7e4c" uuid = "be0214bd-f91f-a760-ac4e-3421ce2b2da0" -version = "1.5.0" +version = "2.11.2" [deps.NonlinearSolveBase.extensions] NonlinearSolveBaseBandedMatricesExt = "BandedMatrices" - NonlinearSolveBaseDiffEqBaseExt = "DiffEqBase" + NonlinearSolveBaseChainRulesCoreExt = "ChainRulesCore" + NonlinearSolveBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] NonlinearSolveBaseForwardDiffExt = "ForwardDiff" NonlinearSolveBaseLineSearchExt = "LineSearch" NonlinearSolveBaseLinearSolveExt = "LinearSolve" + NonlinearSolveBaseMooncakeExt = "Mooncake" + NonlinearSolveBaseReverseDiffExt = "ReverseDiff" NonlinearSolveBaseSparseArraysExt = "SparseArrays" NonlinearSolveBaseSparseMatrixColoringsExt = "SparseMatrixColorings" + NonlinearSolveBaseTrackerExt = "Tracker" [deps.NonlinearSolveBase.weakdeps] BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - DiffEqBase = "2b5f629d-d688-5b77-993f-72d75c75574e" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + 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"LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLJacobianOperators", "Setfield", "StaticArraysCore"] +git-tree-sha1 = "eea7cbe389b168c77df7ff779fb7277019c685c8" uuid = "5959db7a-ea39-4486-b5fe-2dd0bf03d60d" -version = "1.3.0" - -[[deps.NonlinearSolveQuasiNewton]] -deps = ["ArrayInterface", "CommonSolve", "ConcreteStructs", "DiffEqBase", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLOperators", "StaticArraysCore"] -git-tree-sha1 = "44a132cb32aeafcb35a6238fd91a2f3f8ff5c5b0" -uuid = "9a2c21bd-3a47-402d-9113-8faf9a0ee114" -version = "1.2.0" -weakdeps = ["ForwardDiff"] - - [deps.NonlinearSolveQuasiNewton.extensions] - NonlinearSolveQuasiNewtonForwardDiffExt = "ForwardDiff" - -[[deps.NonlinearSolveSpectralMethods]] -deps = ["CommonSolve", "ConcreteStructs", "DiffEqBase", "LineSearch", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "f28b1ab17b5f15eb2b174eaf8813cf17f0b3e6c0" -uuid = "26075421-4e9a-44e1-8bd1-420ed7ad02b2" -version = "1.1.0" -weakdeps = ["ForwardDiff"] - - [deps.NonlinearSolveSpectralMethods.extensions] - NonlinearSolveSpectralMethodsForwardDiffExt = "ForwardDiff" +version = "2.0.0" [[deps.OffsetArrays]] -git-tree-sha1 = "5e1897147d1ff8d98883cda2be2187dcf57d8f0c" +git-tree-sha1 = "117432e406b5c023f665fa73dc26e79ec3630151" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.15.0" +version = "1.17.0" weakdeps = ["Adapt"] [deps.OffsetArrays.extensions] OffsetArraysAdaptExt = "Adapt" [[deps.Ogg_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b6aa4566bb7ae78498a5e68943863fa8b5231b59" uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.5+1" +version = "1.3.6+0" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.23+4" +version = "0.3.27+1" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.1+2" +version = "0.8.5+0" + +[[deps.OpenSSH_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "OpenSSL_jll", "Zlib_jll"] +git-tree-sha1 = "57baa4b81a24c2910afbb6d853aa0685e4312bf7" +uuid = "9bd350c2-7e96-507f-8002-3f2e150b4e1b" +version = "10.3.1+0" [[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "38cb508d080d21dc1128f7fb04f20387ed4c0af4" +deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "NetworkOptions", "OpenSSL_jll", "Sockets"] +git-tree-sha1 = "1d1aaa7d449b58415f97d2839c318b70ffb525a0" uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.4.3" +version = "1.6.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "a9697f1d06cc3eb3fb3ad49cc67f2cfabaac31ea" +git-tree-sha1 = "2ac022577e5eac7da040de17776d51bb770cd895" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.0.16+0" +version = "3.5.6+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -2060,10 +2106,10 @@ uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" version = "0.5.6+0" [[deps.Optim]] -deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] -git-tree-sha1 = "c1f51f704f689f87f28b33836fd460ecf9b34583" +deps = ["Compat", "EnumX", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] +git-tree-sha1 = "48968edaf014f67e58fe4c8a4ce72d392aed3294" uuid = "429524aa-4258-5aef-a3af-852621145aeb" -version = "1.11.0" +version = "1.13.3" [deps.Optim.extensions] OptimMOIExt = "MathOptInterface" @@ -2073,26 +2119,31 @@ version = "1.11.0" [[deps.Optimisers]] deps = ["ChainRulesCore", "ConstructionBase", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "c57a1a58e29a017a2b07e78d075385b981942430" +git-tree-sha1 = "36b5d2b9dd06290cd65fcf5bdbc3a551ed133af5" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.4.5" -weakdeps = ["Adapt", "EnzymeCore"] +version = "0.4.7" [deps.Optimisers.extensions] OptimisersAdaptExt = ["Adapt"] OptimisersEnzymeCoreExt = "EnzymeCore" + OptimisersReactantExt = "Reactant" + + [deps.Optimisers.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" [[deps.Optimization]] -deps = ["ADTypes", "ArrayInterface", "ConsoleProgressMonitor", "DocStringExtensions", "LBFGSB", "LinearAlgebra", "Logging", "LoggingExtras", "OptimizationBase", "Printf", "ProgressLogging", "Reexport", "SciMLBase", "SparseArrays", "TerminalLoggers"] -git-tree-sha1 = "df361b5dc1f91ffb601700a2bc4bfdcd4cc584ef" +deps = ["ADTypes", "ArrayInterface", "ConsoleProgressMonitor", "DocStringExtensions", "LBFGSB", "LinearAlgebra", "Logging", "LoggingExtras", "OptimizationBase", "Printf", "ProgressLogging", "Random", "Reexport", "SciMLBase", "SparseArrays", "TerminalLoggers"] +git-tree-sha1 = "fa2449ce34cc1d7b2191bad4d3356a5376412288" uuid = "7f7a1694-90dd-40f0-9382-eb1efda571ba" -version = "4.1.1" +version = "4.8.0" [[deps.OptimizationBase]] -deps = ["ADTypes", "ArrayInterface", "DifferentiationInterface", "DocStringExtensions", "FastClosures", "LinearAlgebra", "PDMats", "Reexport", "Requires", "SciMLBase", "SparseArrays", "SparseConnectivityTracer", "SparseMatrixColorings"] -git-tree-sha1 = "9e8569bc1c511c425fdc63f7ee41f2da057f8662" +deps = ["ADTypes", "ArrayInterface", "DifferentiationInterface", "DocStringExtensions", "FastClosures", "LinearAlgebra", "PDMats", "Reexport", "SciMLBase", "SparseArrays", "SparseConnectivityTracer", "SparseMatrixColorings"] +git-tree-sha1 = "a4d72b85ec4b0ef7aca1a1e067406fcc673addae" uuid = "bca83a33-5cc9-4baa-983d-23429ab6bcbb" -version = "2.4.0" +version = "2.14.0" [deps.OptimizationBase.extensions] OptimizationEnzymeExt = "Enzyme" @@ -2118,26 +2169,40 @@ version = "2.4.0" [[deps.OptimizationOptimJL]] deps = ["Optim", "Optimization", "PrecompileTools", "Reexport", "SparseArrays"] -git-tree-sha1 = "980ec7190741db164a2923dc42d6f1e7ce2cc434" +git-tree-sha1 = "d9e2cca329ce969a3dc26c9278d77bfeff7012ef" uuid = "36348300-93cb-4f02-beb5-3c3902f8871e" -version = "0.4.1" +version = "0.4.5" [[deps.OptimizationOptimisers]] deps = ["Optimisers", "Optimization", "Printf", "ProgressLogging", "Reexport"] -git-tree-sha1 = "4a2c2d4bb4eb6bbab8e2871657372cf743ff50d5" +git-tree-sha1 = "ea6169605fe93e02df87874f388279ae766175d9" uuid = "42dfb2eb-d2b4-4451-abcd-913932933ac1" -version = "0.3.7" +version = "0.3.11" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6703a85cb3781bd5909d48730a67205f3f31a575" +git-tree-sha1 = "e2bb57a313a74b8104064b7efd01406c0a50d2ff" uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.3+0" +version = "1.6.1+0" [[deps.OrderedCollections]] -git-tree-sha1 = "cc4054e898b852042d7b503313f7ad03de99c3dd" +git-tree-sha1 = "05868e21324cede2207c6f0f466b4bfef6d5e7ee" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.8.0" +version = "1.8.1" + +[[deps.OrdinaryDiffEqCore]] +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ConcreteStructs", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "Polyester", "PrecompileTools", "Preferences", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Static", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "b85ff46f8ca4c8aa5aac6c22f99e3b54abba8b51" +uuid = "bbf590c4-e513-4bbe-9b18-05decba2e5d8" +version = "3.28.0" + + [deps.OrdinaryDiffEqCore.extensions] + OrdinaryDiffEqCoreMooncakeExt = "Mooncake" + OrdinaryDiffEqCoreSparseArraysExt = "SparseArrays" + + [deps.OrdinaryDiffEqCore.weakdeps] + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -2146,43 +2211,40 @@ version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "966b85253e959ea89c53a9abebbf2e964fbf593b" +git-tree-sha1 = "e4cff168707d441cd6bf3ff7e4832bdf34278e4a" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.32" +version = "0.11.37" +weakdeps = ["StatsBase"] + + [deps.PDMats.extensions] + StatsBaseExt = "StatsBase" [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "3b31172c032a1def20c98dae3f2cdc9d10e3b561" +git-tree-sha1 = "58e5ed5e386e156bd93e86b305ebd21ac63d2d04" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" -version = "1.56.1+0" - -[[deps.Parameters]] -deps = ["OrderedCollections", "UnPack"] -git-tree-sha1 = "34c0e9ad262e5f7fc75b10a9952ca7692cfc5fbe" -uuid = "d96e819e-fc66-5662-9728-84c9c7592b0a" -version = "0.12.3" +version = "1.57.1+0" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" +git-tree-sha1 = "5d5e0a78e971354b1c7bff0655d11fdc1b0e12c8" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.1" - -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" -version = "1.3.0" +version = "2.8.4" [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "35621f10a7531bc8fa58f74610b1bfb70a3cfc6b" +git-tree-sha1 = "db76b1ecd5e9715f3d043cec13b2ec93ce015d53" uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.43.4+0" +version = "0.44.2+0" [[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.10.0" +version = "1.11.0" +weakdeps = ["REPL"] + + [deps.Pkg.extensions] + REPLExt = "REPL" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -2192,15 +2254,15 @@ version = "3.3.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "StableRNGs", "Statistics"] -git-tree-sha1 = "3ca9a356cd2e113c420f2c13bea19f8d3fb1cb18" +git-tree-sha1 = "26ca162858917496748aad52bb5d3be4d26a228a" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.4.3" +version = "1.4.4" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "TOML", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "dae01f8c2e069a683d3a6e17bbae5070ab94786f" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "TOML", "UUIDs", "UnicodeFun", "Unzip"] +git-tree-sha1 = "cb20a4eacda080e517e4deb9cfb6c7c518131265" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.40.9" +version = "1.41.6" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -2217,16 +2279,16 @@ version = "1.40.9" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.PoissonRandom]] -deps = ["Random"] -git-tree-sha1 = "a0f1159c33f846aa77c3f30ebbc69795e5327152" +deps = ["LogExpFunctions", "Random"] +git-tree-sha1 = "67afbcbe9e184d6729a92a022147ed4cf972ca7b" uuid = "e409e4f3-bfea-5376-8464-e040bb5c01ab" -version = "0.4.4" +version = "0.4.7" [[deps.Polyester]] deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "6d38fea02d983051776a856b7df75b30cf9a3c1f" +git-tree-sha1 = "16bbc30b5ebea91e9ce1671adc03de2832cff552" uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.16" +version = "0.7.19" [[deps.PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] @@ -2240,6 +2302,18 @@ git-tree-sha1 = "17275485f373e6673f7e7f97051f703ed5b15b20" uuid = "85a6dd25-e78a-55b7-8502-1745935b8125" version = "0.2.4" +[[deps.PreallocationTools]] +deps = ["Adapt", "ArrayInterface", "PrecompileTools"] +git-tree-sha1 = "c05b4c6325262152483a1ecb6c69846d2e01727b" +uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" +version = "0.4.34" +weakdeps = ["ForwardDiff", "ReverseDiff", "SparseConnectivityTracer"] + + [deps.PreallocationTools.extensions] + PreallocationToolsForwardDiffExt = "ForwardDiff" + PreallocationToolsReverseDiffExt = "ReverseDiff" + PreallocationToolsSparseConnectivityTracerExt = "SparseConnectivityTracer" + [[deps.PrecompileTools]] deps = ["Preferences"] git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" @@ -2248,72 +2322,85 @@ version = "1.2.1" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" +git-tree-sha1 = "8b770b60760d4451834fe79dd483e318eee709c4" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.3" +version = "1.5.2" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "1101cd475833706e4d0e7b122218257178f48f34" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "REPL", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "624de6279ab7d94fc9f672f0068107eb6619732c" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.4.0" +version = "3.3.2" + + [deps.PrettyTables.extensions] + PrettyTablesTypstryExt = "Typstry" + + [deps.PrettyTables.weakdeps] + Typstry = "f0ed7684-a786-439e-b1e3-3b82803b501e" [[deps.Primes]] deps = ["IntegerMathUtils"] -git-tree-sha1 = "cb420f77dc474d23ee47ca8d14c90810cafe69e7" +git-tree-sha1 = "25cdd1d20cd005b52fc12cb6be3f75faaf59bb9b" uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" -version = "0.5.6" +version = "0.5.7" [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" +version = "1.11.0" [[deps.ProgressLogging]] deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" +git-tree-sha1 = "f0803bc1171e455a04124affa9c21bba5ac4db32" uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" +version = "0.1.6" [[deps.ProgressMeter]] deps = ["Distributed", "Printf"] -git-tree-sha1 = "8f6bc219586aef8baf0ff9a5fe16ee9c70cb65e4" +git-tree-sha1 = "fbb92c6c56b34e1a2c4c36058f68f332bec840e7" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.10.2" +version = "1.11.0" [[deps.PtrArrays]] -git-tree-sha1 = "1d36ef11a9aaf1e8b74dacc6a731dd1de8fd493d" +git-tree-sha1 = 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"Qt6Base_jll", "Qt6ShaderTools_jll", "Qt6Svg_jll"] +git-tree-sha1 = "d5b7dd0e226774cbd87e2790e34def09245c7eab" uuid = "629bc702-f1f5-5709-abd5-49b8460ea067" -version = "6.7.1+2" +version = "6.10.2+1" [[deps.Qt6ShaderTools_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll"] -git-tree-sha1 = "1a180aeced866700d4bebc3120ea1451201f16bc" +git-tree-sha1 = "4d85eedf69d875982c46643f6b4f66919d7e157b" uuid = "ce943373-25bb-56aa-8eca-768745ed7b5a" -version = "6.7.1+1" +version = "6.10.2+1" + +[[deps.Qt6Svg_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll"] +git-tree-sha1 = "81587ff5ff25a4e1115ce191e36285ede0334c9d" +uuid = "6de9746b-f93d-5813-b365-ba18ad4a9cf3" +version = "6.10.2+0" [[deps.Qt6Wayland_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll", "Qt6Declarative_jll"] -git-tree-sha1 = "729927532d48cf79f49070341e1d918a65aba6b0" +git-tree-sha1 = "672c938b4b4e3e0169a07a5f227029d4905456f2" uuid = "e99dba38-086e-5de3-a5b1-6e4c66e897c3" -version = "6.7.1+1" +version = "6.10.2+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9da16da70037ba9d701192e27befedefb91ec284" +git-tree-sha1 = "5e8e8b0ab68215d7a2b14b9921a946fee794749e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.11.2" +version = "2.11.3" [deps.QuadGK.extensions] QuadGKEnzymeExt = "Enzyme" @@ -2322,34 +2409,24 @@ version = "2.11.2" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" [[deps.QuasiMonteCarlo]] -deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] -git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" +deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "PrecompileTools", "Primes", "Random", "Sobol"] +git-tree-sha1 = "017a6731a1754173013b98f458adb631e368a9d2" uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" -version = "0.3.3" +version = "0.3.5" weakdeps = ["Distributions"] [deps.QuasiMonteCarlo.extensions] QuasiMonteCarloDistributionsExt = "Distributions" [[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" +version = "1.11.0" [[deps.Random]] deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.7.0" - -[[deps.RandomNumbers]] -deps = ["Random"] -git-tree-sha1 = "c6ec94d2aaba1ab2ff983052cf6a606ca5985902" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.6.0" +version = "1.11.0" [[deps.RangeArrays]] git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" @@ -2366,6 +2443,12 @@ weakdeps = ["FixedPointNumbers"] [deps.Ratios.extensions] RatiosFixedPointNumbersExt = "FixedPointNumbers" +[[deps.ReactantCore]] +deps = ["ExpressionExplorer", "MacroTools"] +git-tree-sha1 = "5b9e0fe7fb2cf3794fd96ac32bf2732aa4bb9776" +uuid = "a3311ec8-5e00-46d5-b541-4f83e724a433" +version = "0.1.19" + [[deps.RealDot]] deps = ["LinearAlgebra"] git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" @@ -2385,30 +2468,38 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "e96b644f7bfbf1015f8e42a7c7abfae2a48fafbf" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "LinearAlgebra", "PrecompileTools", "RecipesBase", "StaticArraysCore", "SymbolicIndexingInterface"] +git-tree-sha1 = "d0282d612f22dcad7b81cf487b746e63aa2a6709" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.31.0" +version = "3.54.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsFastBroadcastPolyesterExt = ["FastBroadcast", "Polyester"] RecursiveArrayToolsForwardDiffExt = "ForwardDiff" + RecursiveArrayToolsKernelAbstractionsExt = "KernelAbstractions" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] + RecursiveArrayToolsStatisticsExt = "Statistics" RecursiveArrayToolsStructArraysExt = "StructArrays" + RecursiveArrayToolsTablesExt = ["Tables"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -2431,21 +2522,21 @@ version = "1.3.1" [[deps.ResettableStacks]] deps = ["StaticArrays"] -git-tree-sha1 = "256eeeec186fa7f26f2801732774ccf277f05db9" +git-tree-sha1 = "31c086583c92ab32d82ebef0d09fbcd6dd2c54a7" uuid = "ae5879a3-cd67-5da8-be7f-38c6eb64a37b" -version = "1.1.1" +version = "1.2.0" [[deps.ReverseDiff]] deps = ["ChainRulesCore", "DiffResults", "DiffRules", "ForwardDiff", "FunctionWrappers", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "SpecialFunctions", "StaticArrays", "Statistics"] -git-tree-sha1 = "cc6cd622481ea366bb9067859446a8b01d92b468" +git-tree-sha1 = "f1b07322a8cdc0d46812473b37fb72f69ec07b22" uuid = "37e2e3b7-166d-5795-8a7a-e32c996b4267" -version = "1.15.3" +version = "1.16.2" [[deps.Rmath]] deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "852bd0f55565a9e973fcfee83a84413270224dc4" +git-tree-sha1 = "5b3d50eb374cea306873b371d3f8d3915a018f0b" uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.8.0" +version = "0.9.0" [[deps.Rmath_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2455,15 +2546,19 @@ version = "0.5.1+0" [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00" +git-tree-sha1 = "cfcdc949c4660544ab0fdeed169561cb22f835f4" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.13" +version = "0.5.18" [[deps.SCCNonlinearSolve]] deps = ["CommonSolve", "PrecompileTools", "Reexport", "SciMLBase", "SymbolicIndexingInterface"] -git-tree-sha1 = "0caf35e2204c9045ca203b147b5dac4fa8e1cf20" +git-tree-sha1 = "521a298294a6fd11068df0148b4d57bb31550453" uuid = "9dfe8606-65a1-4bb3-9748-cb89d1561431" -version = "1.0.0" +version = "1.13.0" +weakdeps = ["ChainRulesCore"] + + [deps.SCCNonlinearSolve.extensions] + SCCNonlinearSolveChainRulesCoreExt = "ChainRulesCore" [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" @@ -2481,30 +2576,48 @@ uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" version = "0.6.43" [[deps.SciMLBase]] -deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Moshi", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "ee305515b0946db5f56af699e8b5804fee04146c" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Moshi", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] +git-tree-sha1 = "bdbc7c751d36fdb104d437361950d884d489af85" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.75.1" +version = "2.153.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseDifferentiationInterfaceExt = "DifferentiationInterface" + SciMLBaseDistributionsExt = "Distributions" + SciMLBaseEnzymeExt = "Enzyme" + SciMLBaseForwardDiffExt = "ForwardDiff" SciMLBaseMLStyleExt = "MLStyle" SciMLBaseMakieExt = "Makie" + SciMLBaseMeasurementsExt = "Measurements" + SciMLBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" + SciMLBaseMooncakeExt = "Mooncake" SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" + SciMLBaseReverseDiffExt = "ReverseDiff" + SciMLBaseTrackerExt = "Tracker" + SciMLBaseZygoteExt = ["Zygote", "ChainRulesCore"] [deps.SciMLBase.weakdeps] ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DifferentiationInterface = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" + Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" MLStyle = "d8e11817-5142-5d16-987a-aa16d5891078" Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLBenchmarks]] @@ -2515,46 +2628,65 @@ version = "0.1.3" [[deps.SciMLJacobianOperators]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DifferentiationInterface", "FastClosures", "LinearAlgebra", "SciMLBase", "SciMLOperators"] -git-tree-sha1 = "f66048bb969e67bd7d1bdd03cd0b81219642bbd0" +git-tree-sha1 = "7156a5b51cba1bea33a82a036939ead4131f92bc" uuid = "19f34311-ddf3-4b8b-af20-060888a46c0e" -version = "0.1.1" +version = "0.1.13" + +[[deps.SciMLLogging]] +deps = ["Logging", "LoggingExtras", "Preferences"] +git-tree-sha1 = "0161be062570af4042cf6f69e3d5d0b0555b6927" +uuid = "a6db7da4-7206-11f0-1eab-35f2a5dbe1d1" +version = "1.9.1" + + [deps.SciMLLogging.extensions] + SciMLLoggingTracyExt = "Tracy" + + [deps.SciMLLogging.weakdeps] + Tracy = "e689c965-62c8-4b79-b2c5-8359227902fd" [[deps.SciMLOperators]] -deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools"] -git-tree-sha1 = "6149620767866d4b0f0f7028639b6e661b6a1e44" +deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra"] +git-tree-sha1 = "0e34162268883db01c04f988895a80d0659071bb" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.12" +version = "1.17.0" weakdeps = ["SparseArrays", "StaticArraysCore"] [deps.SciMLOperators.extensions] SciMLOperatorsSparseArraysExt = "SparseArrays" SciMLOperatorsStaticArraysCoreExt = "StaticArraysCore" +[[deps.SciMLPublic]] +git-tree-sha1 = "0ba076dbdce87ba230fff48ca9bca62e1f345c9b" +uuid = "431bcebd-1456-4ced-9d72-93c2757fff0b" +version = "1.0.1" + [[deps.SciMLStructures]] -deps = ["ArrayInterface"] -git-tree-sha1 = "566c4ed301ccb2a44cbd5a27da5f885e0ed1d5df" +deps = ["ArrayInterface", "PrecompileTools"] +git-tree-sha1 = "607f6867d0b0553e98fc7f725c9f9f13b4d01a32" uuid = "53ae85a6-f571-4167-b2af-e1d143709226" -version = "1.7.0" +version = "1.10.0" [[deps.ScientificTypesBase]] -git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" +deps = ["InteractiveUtils"] +git-tree-sha1 = "e785eaa35a0f5518a388f9010e66fda64ea95ede" uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" -version = "3.0.0" +version = "3.1.0" [[deps.ScopedValues]] deps = ["HashArrayMappedTries", "Logging"] -git-tree-sha1 = "1147f140b4c8ddab224c94efa9569fc23d63ab44" +git-tree-sha1 = "67a144433c4ce877ee6d1ada69a124d6b1ecf7be" uuid = "7e506255-f358-4e82-b7e4-beb19740aa63" -version = "1.3.0" +version = "1.6.2" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" +git-tree-sha1 = "9b81b8393e50b7d4e6d0a9f14e192294d3b7c109" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.2.1" +version = "1.3.0" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" +version = "1.11.0" [[deps.Setfield]] deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] @@ -2565,6 +2697,7 @@ version = "1.1.2" [[deps.SharedArrays]] deps = ["Distributed", "Mmap", "Random", "Serialization"] uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" +version = "1.11.0" [[deps.Showoff]] deps = ["Dates", "Grisu"] @@ -2579,32 +2712,25 @@ version = "1.2.0" [[deps.SimpleNonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "a3868a6add9f5989d1f4bd21de0333ef89fb9d9f" +git-tree-sha1 = "744c3f0fb186ad28376199c1e72ca39d0c614b5d" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "2.1.0" +version = "2.11.0" [deps.SimpleNonlinearSolve.extensions] SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" - SimpleNonlinearSolveDiffEqBaseExt = "DiffEqBase" SimpleNonlinearSolveReverseDiffExt = "ReverseDiff" SimpleNonlinearSolveTrackerExt = "Tracker" [deps.SimpleNonlinearSolve.weakdeps] ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DiffEqBase = "2b5f629d-d688-5b77-993f-72d75c75574e" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.SimpleTraits]] deps = ["InteractiveUtils", "MacroTools"] -git-tree-sha1 = "5d7e3f4e11935503d3ecaf7186eac40602e7d231" +git-tree-sha1 = "be8eeac05ec97d379347584fa9fe2f5f76795bcb" uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d" -version = "0.9.4" - -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" +version = "0.9.5" [[deps.Sobol]] deps = ["DelimitedFiles", "Random"] @@ -2614,44 +2740,33 @@ version = "1.5.0" [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" - -[[deps.SoftGlobalScope]] -deps = ["REPL"] -git-tree-sha1 = "986ec2b6162ccb95de5892ed17832f95badf770c" -uuid = "b85f4697-e234-5449-a836-ec8e2f98b302" -version = "1.1.0" +version = "1.11.0" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" +git-tree-sha1 = "64d974c2e6fdf07f8155b5b2ca2ffa9069b608d9" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.2.1" +version = "1.2.2" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -version = "1.10.0" +version = "1.11.0" [[deps.SparseConnectivityTracer]] deps = ["ADTypes", "DocStringExtensions", "FillArrays", "LinearAlgebra", "Random", "SparseArrays"] -git-tree-sha1 = "6651f4663027f3b30a31429d257185f56a571184" +git-tree-sha1 = "590b72143436e443888124aaf4026a636049e3f5" uuid = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" -version = "0.6.13" +version = "1.2.1" +weakdeps = ["ChainRulesCore", "LogExpFunctions", "NNlib", "NaNMath", "SpecialFunctions"] [deps.SparseConnectivityTracer.extensions] - SparseConnectivityTracerDataInterpolationsExt = "DataInterpolations" + SparseConnectivityTracerChainRulesCoreExt = "ChainRulesCore" SparseConnectivityTracerLogExpFunctionsExt = "LogExpFunctions" SparseConnectivityTracerNNlibExt = "NNlib" SparseConnectivityTracerNaNMathExt = "NaNMath" SparseConnectivityTracerSpecialFunctionsExt = "SpecialFunctions" - [deps.SparseConnectivityTracer.weakdeps] - DataInterpolations = "82cc6244-b520-54b8-b5a6-8a565e85f1d0" - LogExpFunctions = "2ab3a3ac-af41-5b50-aa03-7779005ae688" - NNlib = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" - NaNMath = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" - SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b" - [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" @@ -2659,48 +2774,60 @@ uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" version = "0.1.2" [[deps.SparseMatrixColorings]] -deps = ["ADTypes", "DataStructures", "DocStringExtensions", "LinearAlgebra", "Random", "SparseArrays"] -git-tree-sha1 = "e0ae9189392572abe85bc9fd4ce35e772b1e1e10" +deps = ["ADTypes", "DocStringExtensions", "LinearAlgebra", "PrecompileTools", "Random", "SparseArrays"] +git-tree-sha1 = "f63d76c7b7c329cf11badd564fd8ba877b09c3fe" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.4.14" -weakdeps = ["Colors"] +version = "0.4.27" [deps.SparseMatrixColorings.extensions] + SparseMatrixColoringsCUDAExt = ["CUDA", "cuSPARSE"] + SparseMatrixColoringsCliqueTreesExt = "CliqueTrees" SparseMatrixColoringsColorsExt = "Colors" + SparseMatrixColoringsGPUArraysExt = "GPUArrays" + SparseMatrixColoringsJuMPExt = ["JuMP", "MathOptInterface"] + + [deps.SparseMatrixColorings.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" + Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" + GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" + JuMP = "4076af6c-e467-56ae-b986-b466b2749572" + MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" + cuSPARSE = "b26da814-b3bc-49ef-b0ee-c816305aa060" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "64cca0c26b4f31ba18f13f6c12af7c85f478cfde" +git-tree-sha1 = "2700b235561b0335d5bef7097a111dc513b8655e" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.5.0" +version = "2.7.2" weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" -[[deps.SplittablesBase]] -deps = ["Setfield", "Test"] -git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" -uuid = "171d559e-b47b-412a-8079-5efa626c420e" -version = "0.1.15" - [[deps.StableRNGs]] deps = ["Random"] -git-tree-sha1 = "83e6cce8324d49dfaf9ef059227f91ed4441a8e5" +git-tree-sha1 = "4f96c596b8c8258cc7d3b19797854d368f243ddc" uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" -version = "1.0.2" +version = "1.0.4" + +[[deps.StarAlgebras]] +deps = ["LinearAlgebra", "MutableArithmetics", "SparseArrays"] +git-tree-sha1 = "235b1f9d287bbf34083b3d0829343a7942c0ad1c" +uuid = "0c0c59c1-dc5f-42e9-9a8b-b5dc384a6cd1" +version = "0.3.0" [[deps.Static]] -deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools"] -git-tree-sha1 = "87d51a3ee9a4b0d2fe054bdd3fc2436258db2603" +deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools", "SciMLPublic"] +git-tree-sha1 = "bb072715f158b59ad8819ff80da5ffa90cce6ceb" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.1.1" +version = "1.4.0" [[deps.StaticArrayInterface]] -deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Static"] -git-tree-sha1 = "96381d50f1ce85f2663584c8e886a6ca97e60554" +deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "SciMLPublic", "Static"] +git-tree-sha1 = "2a635e15d5035c53b345077c947f31ff91744078" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.8.0" +version = "1.10.0" weakdeps = ["OffsetArrays", "StaticArrays"] [deps.StaticArrayInterface.extensions] @@ -2709,9 +2836,9 @@ weakdeps = ["OffsetArrays", "StaticArrays"] [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "0feb6b9031bd5c51f9072393eb5ab3efd31bf9e4" +git-tree-sha1 = "246a8bb2e6667f832eea063c3a56aef96429a3db" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.13" +version = "1.9.18" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -2719,38 +2846,43 @@ weakdeps = ["ChainRulesCore", "Statistics"] StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] -git-tree-sha1 = "192954ef1208c7019899fbf8049e717f92959682" +git-tree-sha1 = "6ab403037779dae8c514bad259f32a447262455a" uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.3" +version = "1.4.4" [[deps.StatisticalTraits]] deps = ["ScientificTypesBase"] -git-tree-sha1 = "542d979f6e756f13f862aa00b224f04f9e445f11" +git-tree-sha1 = "89f86d9376acd18a1a4fbef66a56335a3a7633b8" uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.4.0" +version = "3.5.0" [[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] +deps = ["LinearAlgebra"] +git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.10.0" +version = "1.11.1" +weakdeps = ["SparseArrays"] + + [deps.Statistics.extensions] + SparseArraysExt = ["SparseArrays"] [[deps.StatsAPI]] deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +git-tree-sha1 = "178ed29fd5b2a2cfc3bd31c13375ae925623ff36" uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.7.0" +version = "1.8.0" [[deps.StatsBase]] -deps = ["AliasTables", "DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "29321314c920c26684834965ec2ce0dacc9cf8e5" +deps = ["AliasTables", "DataAPI", "DataStructures", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "aceda6f4e598d331548e04cc6b2124a6148138e3" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.4" +version = "0.34.10" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "b423576adc27097764a90e163157bcfc9acf0f46" +git-tree-sha1 = "91f091a8716a6bb38417a6e6f274602a19aaa685" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.2" +version = "1.5.2" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -2759,9 +2891,9 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] [[deps.StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "f35f6ab602df8413a50c4a25ca14de821e8605fb" +git-tree-sha1 = "5316097111523c9a970596a5b33cfea5f92e8581" uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.5.7" +version = "0.5.9" [[deps.StringEncodings]] deps = ["Libiconv_jll"] @@ -2771,15 +2903,15 @@ version = "0.3.7" [[deps.StringManipulation]] deps = ["PrecompileTools"] -git-tree-sha1 = "725421ae8e530ec29bcbdddbe91ff8053421d023" +git-tree-sha1 = "d05693d339e37d6ab134c5ab53c29fce5ee5d7d5" uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.4.1" +version = "0.4.4" [[deps.StructArrays]] deps = ["ConstructionBase", "DataAPI", "Tables"] -git-tree-sha1 = "5a3a31c41e15a1e042d60f2f4942adccba05d3c9" +git-tree-sha1 = "ad8002667372439f2e3611cfd14097e03fa4bccd" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.7.0" +version = "0.7.3" weakdeps = ["Adapt", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "SparseArrays", "StaticArrays"] [deps.StructArrays.extensions] @@ -2789,6 +2921,10 @@ weakdeps = ["Adapt", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Sp StructArraysSparseArraysExt = "SparseArrays" StructArraysStaticArraysExt = "StaticArrays" +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" + [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" @@ -2796,25 +2932,29 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "7.2.1+1" +version = "7.7.0+0" [[deps.SymbolicIndexingInterface]] deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] -git-tree-sha1 = "d6c04e26aa1c8f7d144e1a8c47f1c73d3013e289" +git-tree-sha1 = "94c58884e013efff548002e8dc2fdd1cb74dfce5" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.3.38" +version = "0.3.46" +weakdeps = ["PrettyTables"] + + [deps.SymbolicIndexingInterface.extensions] + SymbolicIndexingInterfacePrettyTablesExt = "PrettyTables" [[deps.SymbolicLimits]] deps = ["SymbolicUtils"] -git-tree-sha1 = "fabf4650afe966a2ba646cabd924c3fd43577fc3" +git-tree-sha1 = "f75c7deb7e11eea72d2c1ea31b24070b713ba061" uuid = "19f23fe9-fdab-4a78-91af-e7b7767979c3" -version = "0.2.2" +version = "0.2.3" [[deps.SymbolicUtils]] -deps = ["AbstractTrees", "ArrayInterface", "Bijections", "ChainRulesCore", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "ExproniconLite", "LinearAlgebra", "MultivariatePolynomials", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "TaskLocalValues", "TermInterface", "TimerOutputs", "Unityper", "WeakValueDicts"] -git-tree-sha1 = "bda149bef2e52fe889b825777ebd1724aea4566c" +deps = ["AbstractTrees", "ArrayInterface", "Bijections", "ChainRulesCore", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "ExproniconLite", "LinearAlgebra", "MultivariatePolynomials", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "TaskLocalValues", "TermInterface", "TimerOutputs", "Unityper"] +git-tree-sha1 = "a85b4262a55dbd1af39bb6facf621d79ca6a322d" uuid = "d1185830-fcd6-423d-90d6-eec64667417b" -version = "3.17.0" +version = "3.32.0" [deps.SymbolicUtils.extensions] SymbolicUtilsLabelledArraysExt = "LabelledArrays" @@ -2825,26 +2965,30 @@ version = "3.17.0" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" [[deps.Symbolics]] -deps = ["ADTypes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "LaTeXStrings", "Latexify", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "NaNMath", "OffsetArrays", "PrecompileTools", "Primes", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] -git-tree-sha1 = "b587aa93817acfa302f12a03d6d8d4ff5d1eac2b" +deps = ["ADTypes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "LaTeXStrings", "Latexify", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "NaNMath", "OffsetArrays", "PrecompileTools", "Primes", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "SciMLPublic", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] +git-tree-sha1 = "7e53ce26142025d12565217082830f2f8caa5275" uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7" -version = "6.30.0" +version = "6.58.0" [deps.Symbolics.extensions] + SymbolicsD3TreesExt = "D3Trees" SymbolicsForwardDiffExt = "ForwardDiff" SymbolicsGroebnerExt = "Groebner" SymbolicsLuxExt = "Lux" SymbolicsNemoExt = "Nemo" SymbolicsPreallocationToolsExt = ["PreallocationTools", "ForwardDiff"] SymbolicsSymPyExt = "SymPy" + SymbolicsSymPyPythonCallExt = "SymPyPythonCall" [deps.Symbolics.weakdeps] + D3Trees = "e3df1716-f71e-5df9-9e2d-98e193103c45" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Groebner = "0b43b601-686d-58a3-8a1c-6623616c7cd4" Lux = "b2108857-7c20-44ae-9111-449ecde12c47" Nemo = "2edaba10-b0f1-5616-af89-8c11ac63239a" PreallocationTools = "d236fae5-4411-538c-8e31-a6e3d9e00b46" SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" [[deps.TOML]] deps = ["Dates"] @@ -2859,9 +3003,9 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "598cd7c1f68d1e205689b1c2fe65a9f85846f297" +git-tree-sha1 = "f2c1efbc8f3a609aadf318094f8fc5204bdaf344" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.12.0" +version = "1.12.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] @@ -2869,9 +3013,9 @@ uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" version = "1.10.0" [[deps.TaskLocalValues]] -git-tree-sha1 = "d155450e6dff2a8bc2fcb81dcb194bd98b0aeb46" +git-tree-sha1 = "67e469338d9ce74fc578f7db1736a74d93a49eb8" uuid = "ed4db957-447d-4319-bfb6-7fa9ae7ecf34" -version = "0.1.2" +version = "0.1.3" [[deps.TensorCore]] deps = ["LinearAlgebra"] @@ -2893,6 +3037,7 @@ version = "0.1.7" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" +version = "1.11.0" [[deps.TestItems]] git-tree-sha1 = "42fd9023fef18b9b78c8343a4e2f3813ffbcefcb" @@ -2901,15 +3046,15 @@ version = "1.0.0" [[deps.ThreadingUtilities]] deps = ["ManualMemory"] -git-tree-sha1 = "eda08f7e9818eb53661b3deb74e3159460dfbc27" +git-tree-sha1 = "d969183d3d244b6c33796b5ed01ab97328f2db85" uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" -version = "0.5.2" +version = "0.5.5" [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] -git-tree-sha1 = "f57facfd1be61c42321765d3551b3df50f7e09f6" +git-tree-sha1 = "3748bd928e68c7c346b52125cf41fff0de6937d0" uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" -version = "0.5.28" +version = "0.5.29" [deps.TimerOutputs.extensions] FlameGraphsExt = "FlameGraphs" @@ -2917,42 +3062,15 @@ version = "0.5.28" [deps.TimerOutputs.weakdeps] FlameGraphs = "08572546-2f56-4bcf-ba4e-bab62c3a3f89" -[[deps.Tokenize]] -git-tree-sha1 = "468b4685af4abe0e9fd4d7bf495a6554a6276e75" -uuid = "0796e94c-ce3b-5d07-9a54-7f471281c624" -version = "0.5.29" - [[deps.TranscodingStreams]] git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" version = "0.11.3" -[[deps.Transducers]] -deps = ["Accessors", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "SplittablesBase", "Tables"] -git-tree-sha1 = "7deeab4ff96b85c5f72c824cae53a1398da3d1cb" -uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.84" - - [deps.Transducers.extensions] - TransducersAdaptExt = "Adapt" - TransducersBlockArraysExt = "BlockArrays" - TransducersDataFramesExt = "DataFrames" - TransducersLazyArraysExt = "LazyArrays" - TransducersOnlineStatsBaseExt = "OnlineStatsBase" - TransducersReferenceablesExt = "Referenceables" - - [deps.Transducers.weakdeps] - Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" - Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" - [[deps.Tricks]] -git-tree-sha1 = "6cae795a5a9313bbb4f60683f7263318fc7d1505" +git-tree-sha1 = "311349fd1c93a31f783f977a71e8b062a57d4101" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.10" +version = "0.1.13" [[deps.TruncatedStacktraces]] deps = ["InteractiveUtils", "MacroTools", "Preferences"] @@ -2961,13 +3079,14 @@ uuid = "781d530d-4396-4725-bb49-402e4bee1e77" version = "1.4.0" [[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" +git-tree-sha1 = "bef26fb046d031353ef97a82e3fdb6afe7f21b1a" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" +version = "1.6.1" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +version = "1.11.0" [[deps.UnPack]] git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" @@ -2976,6 +3095,7 @@ version = "1.0.2" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +version = "1.11.0" [[deps.UnicodeFun]] deps = ["REPL"] @@ -2985,20 +3105,18 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "c0667a8e676c53d390a09dc6870b3d8d6650e2bf" +git-tree-sha1 = "57e1b2c9de4bd6f40ecb9de4ac1797b81970d008" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.22.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] +version = "1.28.0" +weakdeps = ["ConstructionBase", "ForwardDiff", "InverseFunctions", "LaTeXStrings", "Latexify", "NaNMath", "Printf"] [deps.Unitful.extensions] ConstructionBaseUnitfulExt = "ConstructionBase" + ForwardDiffExt = "ForwardDiff" InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "975c354fcd5f7e1ddcc1f1a23e6e091d99e99bc8" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.4" + LatexifyExt = ["Latexify", "LaTeXStrings"] + NaNMathExt = "NaNMath" + PrintfExt = "Printf" [[deps.Unityper]] deps = ["ConstructionBase"] @@ -3007,14 +3125,16 @@ uuid = "a7c27f48-0311-42f6-a7f8-2c11e75eb415" version = "0.1.6" [[deps.UnsafeAtomics]] -git-tree-sha1 = "b13c4edda90890e5b04ba24e20a310fbe6f249ff" +git-tree-sha1 = "0f30765c32d66d58e41f4cb5624d4fc8a82ec13b" uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.3.0" -weakdeps = ["LLVM"] +version = "0.3.1" [deps.UnsafeAtomics.extensions] UnsafeAtomicsLLVM = ["LLVM"] + [deps.UnsafeAtomics.weakdeps] + LLVM = "929cbde3-209d-540e-8aea-75f648917ca0" + [[deps.Unzip]] git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" @@ -3022,9 +3142,9 @@ version = "0.2.0" [[deps.VectorizationBase]] deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "4ab62a49f1d8d9548a1c8d1a75e5f55cf196f64e" +git-tree-sha1 = "d1d9a935a26c475ebffd54e9c7ad11627c43ea85" uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" -version = "0.21.71" +version = "0.21.72" [[deps.VersionParsing]] git-tree-sha1 = "58d6e80b4ee071f5efd07fda82cb9fbe17200868" @@ -3038,21 +3158,10 @@ uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" version = "1.3.243+0" [[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "85c7811eddec9e7f22615371c3cc81a504c508ee" +deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll"] +git-tree-sha1 = "96478df35bbc2f3e1e791bc7a3d0eeee559e60e9" uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+2" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "5db3e9d307d32baba7067b13fc7b5aa6edd4a19a" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.36.0+0" - -[[deps.WeakValueDicts]] -git-tree-sha1 = "98528c2610a5479f091d470967a25becfd83edd0" -uuid = "897b6980-f191-5a31-bcb0-bf3c4585e0c1" -version = "0.1.0" +version = "1.24.0+0" [[deps.Weave]] deps = ["Base64", "Dates", "Highlights", "JSON", "Markdown", "Mustache", "Pkg", "Printf", "REPL", "RelocatableFolders", "Requires", "Serialization", "YAML"] @@ -3061,214 +3170,198 @@ uuid = "44d3d7a6-8a23-5bf8-98c5-b353f8df5ec9" version = "0.10.12" [[deps.WeightInitializers]] -deps = ["ArgCheck", "ConcreteStructs", "GPUArraysCore", "LinearAlgebra", "Random", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "47b97ba36fcbbf9cc6707ed6ab60cf24fe50b981" +deps = ["ConcreteStructs", "GPUArraysCore", "LinearAlgebra", "Random", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "2af44c69f5c37b7b1d14e262347a24ba349052d6" uuid = "d49dbf32-c5c2-4618-8acc-27bb2598ef2d" -version = "1.1.1" +version = "1.3.3" [deps.WeightInitializers.extensions] - WeightInitializersAMDGPUExt = ["AMDGPU", "GPUArrays"] - WeightInitializersCUDAExt = ["CUDA", "GPUArrays"] - WeightInitializersChainRulesCoreExt = "ChainRulesCore" - WeightInitializersGPUArraysExt = "GPUArrays" - WeightInitializersMetalExt = ["Metal", "GPUArrays"] - WeightInitializersReactantExt = "Reactant" - WeightInitializersoneAPIExt = ["oneAPI", "GPUArrays"] + AMDGPUExt = "AMDGPU" + CUDAExt = "CUDA" + ChainRulesCoreExt = "ChainRulesCore" + GPUArraysExt = "GPUArrays" + ReactantExt = "Reactant" [deps.WeightInitializers.weakdeps] AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" - Metal = "dde4c033-4e86-420c-a63e-0dd931031962" Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" - oneAPI = "8f75cd03-7ff8-4ecb-9b8f-daf728133b1b" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" +git-tree-sha1 = "248a7031b3da79a127f14e5dc5f417e26f9f6db7" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "1.0.0" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "b8b243e47228b4a3877f1dd6aee0c5d56db7fcf4" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.13.6+1" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "7d1671acbe47ac88e981868a078bd6b4e27c5191" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.42+0" +version = "1.1.0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "56c6604ec8b2d82cc4cfe01aa03b00426aac7e1f" +git-tree-sha1 = "b29c22e245d092b8b4e8d3c09ad7baa586d9f573" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.6.4+1" +version = "5.8.3+0" [[deps.Xorg_libICE_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "326b4fea307b0b39892b3e85fa451692eda8d46c" +git-tree-sha1 = "a3ea76ee3f4facd7a64684f9af25310825ee3668" uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" -version = "1.1.1+0" +version = "1.1.2+0" [[deps.Xorg_libSM_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libICE_jll"] -git-tree-sha1 = "3796722887072218eabafb494a13c963209754ce" +git-tree-sha1 = "9c7ad99c629a44f81e7799eb05ec2746abb5d588" uuid = "c834827a-8449-5923-a945-d239c165b7dd" -version = "1.2.4+0" +version = "1.2.6+0" [[deps.Xorg_libX11_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "9dafcee1d24c4f024e7edc92603cedba72118283" +git-tree-sha1 = "808090ede1d41644447dd5cbafced4731c56bd2f" uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.8.6+3" +version = "1.8.13+0" [[deps.Xorg_libXau_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e9216fdcd8514b7072b43653874fd688e4c6c003" +git-tree-sha1 = "aa1261ebbac3ccc8d16558ae6799524c450ed16b" uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.12+0" +version = "1.0.13+0" [[deps.Xorg_libXcursor_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "807c226eaf3651e7b2c468f687ac788291f9a89b" +git-tree-sha1 = "6c74ca84bbabc18c4547014765d194ff0b4dc9da" uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.3+0" +version = "1.2.4+0" [[deps.Xorg_libXdmcp_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "89799ae67c17caa5b3b5a19b8469eeee474377db" +git-tree-sha1 = "52858d64353db33a56e13c341d7bf44cd0d7b309" uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.5+0" +version = "1.1.6+0" [[deps.Xorg_libXext_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "d7155fea91a4123ef59f42c4afb5ab3b4ca95058" +git-tree-sha1 = "1a4a26870bf1e5d26cd585e38038d399d7e65706" uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.6+3" +version = "1.3.8+0" [[deps.Xorg_libXfixes_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "6fcc21d5aea1a0b7cce6cab3e62246abd1949b86" +git-tree-sha1 = "75e00946e43621e09d431d9b95818ee751e6b2ef" uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "6.0.0+0" +version = "6.0.2+0" [[deps.Xorg_libXi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "984b313b049c89739075b8e2a94407076de17449" +git-tree-sha1 = "a376af5c7ae60d29825164db40787f15c80c7c54" uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.8.2+0" +version = "1.8.3+0" [[deps.Xorg_libXinerama_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXext_jll"] -git-tree-sha1 = "a1a7eaf6c3b5b05cb903e35e8372049b107ac729" +git-tree-sha1 = "0ba01bc7396896a4ace8aab67db31403c71628f4" uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.5+0" +version = "1.1.7+0" [[deps.Xorg_libXrandr_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "b6f664b7b2f6a39689d822a6300b14df4668f0f4" +git-tree-sha1 = "6c174ef70c96c76f4c3f4d3cfbe09d018bcd1b53" uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.4+0" +version = "1.5.6+0" [[deps.Xorg_libXrender_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "a490c6212a0e90d2d55111ac956f7c4fa9c277a6" +git-tree-sha1 = "7ed9347888fac59a618302ee38216dd0379c480d" uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.11+1" +version = "0.9.12+0" -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "c57201109a9e4c0585b208bb408bc41d205ac4e9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.2+0" +[[deps.Xorg_libpciaccess_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "58972370b81423fc546c56a60ed1a009450177c3" +uuid = "a65dc6b1-eb27-53a1-bb3e-dea574b5389e" +version = "0.19.0+0" [[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "1a74296303b6524a0472a8cb12d3d87a78eb3612" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXau_jll", "Xorg_libXdmcp_jll"] +git-tree-sha1 = "bfcaf7ec088eaba362093393fe11aa141fa15422" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.17.0+3" +version = "1.17.1+0" [[deps.Xorg_libxkbfile_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "dbc53e4cf7701c6c7047c51e17d6e64df55dca94" +git-tree-sha1 = "ed756a03e95fff88d8f738ebc2849431bdd4fd1a" uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+1" +version = "1.2.0+0" [[deps.Xorg_xcb_util_cursor_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" +git-tree-sha1 = "9750dc53819eba4e9a20be42349a6d3b86c7cdf8" uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" +version = "0.1.6+0" [[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "f4fc02e384b74418679983a97385644b67e1263b" uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" +version = "0.4.1+0" [[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll"] +git-tree-sha1 = "68da27247e7d8d8dafd1fcf0c3654ad6506f5f97" uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" +version = "0.4.1+0" [[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "44ec54b0e2acd408b0fb361e1e9244c60c9c3dd4" uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" +version = "0.4.1+0" [[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "5b0263b6d080716a02544c55fdff2c8d7f9a16a0" uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" +version = "0.3.10+0" [[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "f233c83cad1fa0e70b7771e0e21b061a116f2763" uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" +version = "0.4.2+0" [[deps.Xorg_xkbcomp_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "ab2221d309eda71020cdda67a973aa582aa85d69" +git-tree-sha1 = "801a858fc9fb90c11ffddee1801bb06a738bda9b" uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+1" +version = "1.4.7+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" +git-tree-sha1 = "429722587208f02b1cecbddcd20133df2f1ed796" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" +version = "2.47.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6dba04dbfb72ae3ebe5418ba33d087ba8aa8cb00" +git-tree-sha1 = "a63799ff68005991f9d9491b6e95bd3478d783cb" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.1+0" +version = "1.6.0+0" [[deps.YAML]] deps = ["Base64", "Dates", "Printf", "StringEncodings"] -git-tree-sha1 = "b46894beba6c05cd185d174654479aaec09ea6b1" +git-tree-sha1 = "a1c0c7585346251353cddede21f180b96388c403" uuid = "ddb6d928-2868-570f-bddf-ab3f9cf99eb6" -version = "0.4.13" +version = "0.4.16" [[deps.ZMQ]] -deps = ["FileWatching", "PrecompileTools", "Sockets", "ZeroMQ_jll"] -git-tree-sha1 = "33333bdded3835f81b9b6353da9243dc4ec62e0f" +deps = ["FileWatching", "PrecompileTools", "Printf", "Sockets", "ZeroMQ_jll"] +git-tree-sha1 = "5f1c7008e2258c61af0eafef8c1f536b9fffbbd2" uuid = "c2297ded-f4af-51ae-bb23-16f91089e4e1" -version = "1.4.0" +version = "1.5.1" [[deps.ZeroMQ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "libsodium_jll"] -git-tree-sha1 = "f02ce8f0fda1ed40f4d0d59a2ad05e35e8ac9b0e" +git-tree-sha1 = "766d90db2817565b667c1cc9cc420d668f2e8dba" uuid = "8f1865be-045e-5c20-9c9f-bfbfb0764568" -version = "4.3.5+3" +version = "4.3.6+0" [[deps.Zlib_jll]] deps = ["Libdl"] @@ -3282,17 +3375,19 @@ uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" version = "1.5.7+1" [[deps.Zygote]] -deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] -git-tree-sha1 = "0b3c944f5d2d8b466c5d20a84c229c17c528f49e" +deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] +git-tree-sha1 = "a29cbf3968d36022198bcc6f23fdfd70f7caf737" uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" -version = "0.6.75" +version = "0.7.10" [deps.Zygote.extensions] + ZygoteAtomExt = "Atom" ZygoteColorsExt = "Colors" ZygoteDistancesExt = "Distances" ZygoteTrackerExt = "Tracker" [deps.Zygote.weakdeps] + Atom = "c52e3926-4ff0-5f6e-af25-54175e0327b1" Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" Distances = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" @@ -3304,34 +3399,28 @@ uuid = "700de1a5-db45-46bc-99cf-38207098b444" version = "0.2.7" [[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c3b0e6196d50eab0c5ed34021aaa0bb463489510" uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" +version = "3.2.14+0" [[deps.fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6e50f145003024df4f5cb96c7fce79466741d601" +git-tree-sha1 = "b6a34e0e0960190ac2a4363a1bd003504772d631" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.56.3+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0ba42241cb6809f1a278d0bcb976e0483c3f1f2d" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+1" +version = "0.61.1+0" [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "522c1df09d05a71785765d19c9524661234738e9" +git-tree-sha1 = "850b06095ee71f0135d644ffd8a52850699581ed" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.11.0+0" +version = "3.13.3+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "e17c115d55c5fbb7e52ebedb427a0dca79d4484e" +git-tree-sha1 = "125eedcb0a4a0bba65b657251ce1d27c8714e9d6" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.2+0" +version = "0.17.4+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] @@ -3344,58 +3433,70 @@ git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" version = "0.2.2+0" +[[deps.libdrm_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libpciaccess_jll"] +git-tree-sha1 = "63aac0bcb0b582e11bad965cef4a689905456c03" +uuid = "8e53e030-5e6c-5a89-a30b-be5b7263a166" +version = "2.4.125+1" + [[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "56d643b57b188d30cccc25e331d416d3d358e557" uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" +version = "1.13.4+0" [[deps.libfdk_aac_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8a22cf860a7d27e4f3498a0fe0811a7957badb38" +git-tree-sha1 = "646634dd19587a56ee2f1199563ec056c5f228df" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.3+0" +version = "2.0.4+0" [[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +deps = ["Artifacts", "JLLWrappers", "Libdl", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "91d05d7f4a9f67205bd6cf395e488009fe85b499" uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" +version = "1.28.1+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "068dfe202b0a05b8332f1e8e6b4080684b9c7700" +git-tree-sha1 = "e51150d5ab85cee6fc36726850f0e627ad2e4aba" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.47+0" +version = "1.6.58+0" [[deps.libsodium_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f76d682d87eefadd3f165d8d9fda436464213142" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "011b0a7331b41c25524b64dc42afc9683ee89026" uuid = "a9144af2-ca23-56d9-984f-0d03f7b5ccf8" -version = "1.0.20+3" +version = "1.0.21+0" + +[[deps.libva_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll", "Xorg_libXext_jll", "Xorg_libXfixes_jll", "libdrm_jll"] +git-tree-sha1 = "7dbf96baae3310fe2fa0df0ccbb3c6288d5816c9" +uuid = "9a156e7d-b971-5f62-b2c9-67348b8fb97c" +version = "2.23.0+0" [[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "490376214c4721cdaca654041f635213c6165cb3" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] +git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+2" +version = "1.3.8+0" [[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b4d631fd51f2e9cdd93724ae25b2efc198b059b1" uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" +version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.52.0+1" +version = "1.59.0+0" [[deps.oneTBB_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d5a767a3bb77135a99e433afe0eb14cd7f6914c3" +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "1350188a69a6e46f799d3945beef36435ed7262f" uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" -version = "2022.0.0+0" +version = "2022.0.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] @@ -3403,19 +3504,19 @@ uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" version = "17.4.0+2" [[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" +version = "10164.0.1+0" [[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e7b67590c14d487e734dcb925924c5dc43ec85f3" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" +version = "4.1.0+0" [[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "63406453ed9b33a0df95d570816d5366c92b7809" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "a1fc6507a40bf504527d0d4067d718f8e179b2b8" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+2" +version = "1.13.0+0" diff --git a/benchmarks/PINNOptimizers/Manifest.toml b/benchmarks/PINNOptimizers/Manifest.toml index e242f5a69..6d0eab5f3 100644 --- a/benchmarks/PINNOptimizers/Manifest.toml +++ b/benchmarks/PINNOptimizers/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.7" +julia_version = "1.11.9" manifest_format = "2.0" -project_hash = "fa1d24bc5715bca6332efc5789b1cdd01fa7610d" +project_hash = "976d4051a25d43ddb2d2e421fa339738f3ecef71" [[deps.ADTypes]] -git-tree-sha1 = "72af59f5b8f09faee36b4ec48e014a79210f2f4f" +git-tree-sha1 = "bbc22a9a08a0ef6460041086d8a7b27940ed4ffd" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.11.0" +version = "1.22.0" weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] [deps.ADTypes.extensions] @@ -27,10 +27,18 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "aa469a7830413bd4c855963e3f648bd9d145c2c3" +deps = ["BangBang", "ConsoleProgressMonitor", "Dates", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "UUIDs"] +git-tree-sha1 = "8ac6182431567907e0d5170bcac6dd48fa541f78" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "5.6.0" +version = "5.15.1" + + [deps.AbstractMCMC.extensions] + AbstractMCMCOnlineStatsExt = "OnlineStats" + AbstractMCMCTensorBoardLoggerExt = "TensorBoardLogger" + + [deps.AbstractMCMC.weakdeps] + OnlineStats = "a15396b6-48d5-5d58-9928-6d29437db91e" + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.AbstractTrees]] git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" @@ -39,9 +47,9 @@ version = "0.4.5" [[deps.Accessors]] deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] -git-tree-sha1 = "0ba8f4c1f06707985ffb4804fdad1bf97b233897" +git-tree-sha1 = "2eeb2c9bef11013efc6f8f97f32ee59b146b09fb" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.41" +version = "0.1.44" [deps.Accessors.extensions] AxisKeysExt = "AxisKeys" @@ -56,7 +64,6 @@ version = "0.1.41" AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - Requires = "ae029012-a4dd-5104-9daa-d747884805df" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" @@ -64,27 +71,32 @@ version = "0.1.41" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "50c3c56a52972d78e8be9fd135bfb91c9574c140" +git-tree-sha1 = "0761717147821d696c9470a7a86364b2fbd22fd8" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.1.1" -weakdeps = ["StaticArrays"] +version = "4.5.2" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AdvancedHMC]] -deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "6f6a228808fe00ad05b47d74747c800d3df18acb" +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Setfield", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "15e1bafe97eb0eeb77c8dae63cdcfa133986b254" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.6.4" +version = "0.8.3" [deps.AdvancedHMC.extensions] + AdvancedHMCADTypesExt = "ADTypes" AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCComponentArraysExt = "ComponentArrays" AdvancedHMCMCMCChainsExt = "MCMCChains" AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" [deps.AdvancedHMC.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" @@ -95,13 +107,13 @@ uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" version = "1.1.3" [[deps.ArgCheck]] -git-tree-sha1 = "680b3b8759bd4c54052ada14e52355ab69e07876" +git-tree-sha1 = "f9e9a66c9b7be1ad7372bbd9b062d9230c30c5ce" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.4.0" +version = "2.5.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.ArnoldiMethod]] deps = ["LinearAlgebra", "Random", "StaticArrays"] @@ -111,24 +123,27 @@ version = "0.4.0" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "017fcb757f8e921fb44ee063a7aafe5f89b86dd1" +git-tree-sha1 = "54f895554d05c83e3dd59f6a396671dae8999573" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.18.0" +version = "7.24.0" [deps.ArrayInterface.extensions] + ArrayInterfaceAMDGPUExt = "AMDGPU" ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" - ArrayInterfaceCUDSSExt = "CUDSS" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" ArrayInterfaceReverseDiffExt = "ReverseDiff" ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" [deps.ArrayInterface.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" @@ -136,16 +151,17 @@ version = "7.18.0" ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.ArrayLayouts]] -deps = ["FillArrays", "LinearAlgebra"] -git-tree-sha1 = "2bf6e01f453284cb61c312836b4680331ddfc44b" +deps = ["FillArrays", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "e0b47732a192dd59b9d079a06d04235e2f833963" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.11.0" +version = "1.12.2" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -153,21 +169,24 @@ weakdeps = ["SparseArrays"] [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +version = "1.11.0" [[deps.Atomix]] deps = ["UnsafeAtomics"] -git-tree-sha1 = "c3b238aa28c1bebd4b5ea4988bebf27e9a01b72b" +git-tree-sha1 = "b8651b2eb5796a386b0398a20b519a6a6150f75c" uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "1.0.1" +version = "1.1.3" [deps.Atomix.extensions] AtomixCUDAExt = "CUDA" AtomixMetalExt = "Metal" + AtomixOpenCLExt = "OpenCL" AtomixoneAPIExt = "oneAPI" [deps.Atomix.weakdeps] CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + OpenCL = "08131aa3-fb12-5dee-8b74-c09406e224a2" oneAPI = "8f75cd03-7ff8-4ecb-9b8f-daf728133b1b" [[deps.AxisAlgorithms]] @@ -178,15 +197,15 @@ version = "1.1.0" [[deps.AxisArrays]] deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] -git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +git-tree-sha1 = "4126b08903b777c88edf1754288144a0492c05ad" uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" -version = "0.4.7" +version = "0.4.8" [[deps.BangBang]] -deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires"] -git-tree-sha1 = "e2144b631226d9eeab2d746ca8880b7ccff504ae" +deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] +git-tree-sha1 = "cceb62468025be98d42a5dc581b163c20896b040" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.4.3" +version = "0.4.9" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" @@ -206,16 +225,12 @@ version = "0.4.3" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" - -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" +version = "1.11.0" [[deps.Bijections]] -git-tree-sha1 = "d8b0439d2be438a5f2cd68ec158fe08a7b2595b7" +git-tree-sha1 = "a2d308fcd4c2fb90e943cf9cd2fbfa9c32b69733" uuid = "e2ed5e7c-b2de-5872-ae92-c73ca462fb04" -version = "0.1.9" +version = "0.2.2" [[deps.BitFlags]] git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" @@ -230,66 +245,58 @@ version = "0.1.6" [[deps.BlockArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] -git-tree-sha1 = "b406207917260364a2e0287b42e4c6772cb9db88" +git-tree-sha1 = "0f606a9894e2bcda541ceb82a91a13c5d450ed97" uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" -version = "1.3.0" +version = "1.9.3" [deps.BlockArrays.extensions] + BlockArraysAdaptExt = "Adapt" BlockArraysBandedMatricesExt = "BandedMatrices" [deps.BlockArrays.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" [[deps.BracketingNonlinearSolve]] deps = ["CommonSolve", "ConcreteStructs", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "95cb19c37ea427617e9795655667712f03058d98" +git-tree-sha1 = "7ad7171d693ae5552ac43862e7f6b61df4471c2b" uuid = "70df07ce-3d50-431d-a3e7-ca6ddb60ac1e" -version = "1.1.0" -weakdeps = ["ForwardDiff"] +version = "1.12.1" +weakdeps = ["ChainRulesCore", "ForwardDiff"] [deps.BracketingNonlinearSolve.extensions] + BracketingNonlinearSolveChainRulesCoreExt = ["ChainRulesCore", "ForwardDiff"] BracketingNonlinearSolveForwardDiffExt = "ForwardDiff" [[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "8873e196c2eb87962a2048b3b8e08946535864a1" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+4" - -[[deps.CEnum]] -git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" -uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.5.0" +version = "1.0.9+0" [[deps.CPUSummary]] -deps = ["CpuId", "IfElse", "PrecompileTools", "Static"] -git-tree-sha1 = "5a97e67919535d6841172016c9530fd69494e5ec" +deps = ["CpuId", "IfElse", "PrecompileTools", "Preferences", "Static"] +git-tree-sha1 = "f3a21d7fc84ba618a779d1ed2fcca2e682865bab" uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" -version = "0.2.6" - -[[deps.CSTParser]] -deps = ["Tokenize"] -git-tree-sha1 = "0157e592151e39fa570645e2b2debcdfb8a0f112" -uuid = "00ebfdb7-1f24-5e51-bd34-a7502290713f" -version = "3.4.3" +version = "0.2.7" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "009060c9a6168704143100f36ab08f06c2af4642" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d0efe2c6fdcdaa1c161d206aa8b933788397ec71" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.2+1" +version = "1.18.6+0" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "4312d7869590fab4a4f789e97bd82f0a04eaaa05" +git-tree-sha1 = "3c190c570fb3108c09f838607386d10c71701789" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.72.2" +version = "1.73.0" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "1713c74e00545bfe14605d2a2be1712de8fbcb58" +git-tree-sha1 = "12177ad6b3cad7fd50c8b3825ce24a99ad61c18f" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.25.1" +version = "1.26.1" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] @@ -303,28 +310,26 @@ version = "0.1.13" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "bce6804e5e6044c6daab27bb533d1295e4a2e759" +git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.6" +version = "0.7.8" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "c785dfb1b3bfddd1da557e861b919819b82bbe5b" +git-tree-sha1 = "b0fd3f56fa442f81e0a47815c92245acfaaa4e34" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.27.1" +version = "3.31.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "c7acce7a7e1078a20a285211dd73cd3941a871d6" +git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.12.0" +version = "0.12.1" +weakdeps = ["StyledStrings"] [deps.ColorTypes.extensions] StyledStringsExt = "StyledStrings" - [deps.ColorTypes.weakdeps] - StyledStrings = "f489334b-da3d-4c2e-b8f0-e476e12c162b" - [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" @@ -337,9 +342,9 @@ weakdeps = ["SpecialFunctions"] [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "64e15186f0aa277e174aa81798f7eb8598e0157e" +git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.13.0" +version = "0.13.1" [[deps.Combinatorics]] git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" @@ -347,15 +352,23 @@ uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" version = "1.0.2" [[deps.CommonMark]] -deps = ["Crayons", "PrecompileTools"] -git-tree-sha1 = "3faae67b8899797592335832fccf4b3c80bb04fa" +deps = ["PrecompileTools"] +git-tree-sha1 = "65ea18ada9814f09c5013924c42fe8b53d6ee467" uuid = "a80b9123-70ca-4bc0-993e-6e3bcb318db6" -version = "0.8.15" +version = "0.10.3" + + [deps.CommonMark.extensions] + CommonMarkMarkdownASTExt = "MarkdownAST" + CommonMarkMarkdownExt = "Markdown" + + [deps.CommonMark.weakdeps] + Markdown = "d6f4376e-aef5-505a-96c1-9c027394607a" + MarkdownAST = "d0879d2d-cac2-40c8-9cee-1863dc0c7391" [[deps.CommonSolve]] -git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +git-tree-sha1 = "78ea4ddbcf9c241827e7035c3a03e2e456711470" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.4" +version = "0.2.6" [[deps.CommonSubexpressions]] deps = ["MacroTools"] @@ -370,9 +383,9 @@ version = "1.0.0" [[deps.Compat]] deps = ["TOML", "UUIDs"] -git-tree-sha1 = "8ae8d32e09f0dcf42a36b90d4e17f5dd2e4c4215" +git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.16.0" +version = "4.18.1" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -384,14 +397,15 @@ uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" version = "1.1.1+0" [[deps.ComponentArrays]] -deps = ["Adapt", "ArrayInterface", "ChainRulesCore", "ConstructionBase", "ForwardDiff", "Functors", "LinearAlgebra", "StaticArrayInterface", "StaticArraysCore"] -git-tree-sha1 = "b926f8f322026c3a1d9539253ab111735eb540f8" +deps = ["Adapt", "ArrayInterface", "ChainRulesCore", "ConstructionBase", "Functors", "LinearAlgebra", "StaticArrayInterface", "StaticArraysCore"] +git-tree-sha1 = "342e21057cfa3152eb456ebcda25ed5ce3f0e275" uuid = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" -version = "0.15.22" +version = "0.15.37" [deps.ComponentArrays.extensions] ComponentArraysGPUArraysExt = "GPUArrays" ComponentArraysKernelAbstractionsExt = "KernelAbstractions" + ComponentArraysMooncakeExt = "Mooncake" ComponentArraysOptimisersExt = "Optimisers" ComponentArraysReactantExt = "Reactant" ComponentArraysRecursiveArrayToolsExt = "RecursiveArrayTools" @@ -403,6 +417,7 @@ version = "0.15.22" [deps.ComponentArrays.weakdeps] GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" Optimisers = "3bd65402-5787-11e9-1adc-39752487f4e2" Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" @@ -432,15 +447,15 @@ version = "0.2.3" [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "f36e5e8fdffcb5646ea5da81495a5a7566005127" +git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.4.3" +version = "2.5.1" [[deps.Conda]] deps = ["Downloads", "JSON", "VersionParsing"] -git-tree-sha1 = "b19db3927f0db4151cb86d073689f2428e524576" +git-tree-sha1 = "8f06b0cfa4c514c7b9546756dbae91fcfbc92dc9" uuid = "8f4d0f93-b110-5947-807f-2305c1781a2d" -version = "1.10.2" +version = "1.10.3" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -449,9 +464,9 @@ uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" version = "0.1.2" [[deps.ConstructionBase]] -git-tree-sha1 = "76219f1ed5771adbb096743bff43fb5fdd4c1157" +git-tree-sha1 = "b4b092499347b18a015186eae3042f72267106cb" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.8" +version = "1.6.0" weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] @@ -493,10 +508,10 @@ uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" version = "1.16.0" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" +deps = ["OrderedCollections"] +git-tree-sha1 = "e86f4a2805f7f19bec5129bc9150c38208e5dc23" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.20" +version = "0.19.4" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -506,17 +521,13 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" [[deps.Dbus_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "fc173b380865f70627d7dd1190dc2fce6cc105af" +git-tree-sha1 = "473e9afc9cf30814eb67ffa5f2db7df82c3ad9fd" uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" -version = "1.14.10+0" - -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" +version = "1.16.2+0" [[deps.DelimitedFiles]] deps = ["Mmap"] @@ -525,20 +536,24 @@ uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" version = "1.9.1" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "Statistics", "TruncatedStacktraces"] -git-tree-sha1 = "b1e23a7fe7371934d9d538114a7e7166c1d09e05" +deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "803d463050fae6121f5d15fd449e9538cb993ad9" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.161.0" +version = "6.214.1" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" DiffEqBaseChainRulesCoreExt = "ChainRulesCore" - DiffEqBaseDistributionsExt = "Distributions" + DiffEqBaseDynamicQuantitiesExt = "DynamicQuantities" DiffEqBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] + DiffEqBaseFlexUnitsExt = "FlexUnits" + DiffEqBaseForwardDiffExt = ["ForwardDiff"] + DiffEqBaseGTPSAExt = "GTPSA" DiffEqBaseGeneralizedGeneratedExt = "GeneralizedGenerated" DiffEqBaseMPIExt = "MPI" DiffEqBaseMeasurementsExt = "Measurements" DiffEqBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" + DiffEqBaseMooncakeExt = "Mooncake" DiffEqBaseReverseDiffExt = "ReverseDiff" DiffEqBaseSparseArraysExt = "SparseArrays" DiffEqBaseTrackerExt = "Tracker" @@ -548,32 +563,43 @@ version = "6.161.0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" + DynamicQuantities = "06fc5a27-2a28-4c7c-a15d-362465fb6821" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FlexUnits = "76e01b6b-c995-4ce6-8559-91e72a3d4e95" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" GeneralizedGenerated = "6b9d7cbe-bcb9-11e9-073f-15a7a543e2eb" MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.DiffEqCallbacks]] -deps = ["ConcreteStructs", "DataStructures", "DiffEqBase", "DifferentiationInterface", "Functors", "LinearAlgebra", "Markdown", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "b1f970a2873a2cf76ce35fb0ed2b755a11b31052" +deps = ["ConcreteStructs", "DataStructures", "DiffEqBase", "DifferentiationInterface", "LinearAlgebra", "Markdown", "PrecompileTools", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] +git-tree-sha1 = "51f445c25b80c26c83c61520cde214adf8c05227" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "4.1.0" +version = "4.17.0" +weakdeps = ["Functors"] + + [deps.DiffEqCallbacks.extensions] + DiffEqCallbacksFunctorsExt = "Functors" [[deps.DiffEqNoiseProcess]] -deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "880d1fcf95e6492a4e7d65c2866dbdbf6580d4f8" +deps = ["CommonSolve", "DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "PoissonRandom", "QuadGK", "Random", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] +git-tree-sha1 = "5b5fe6eb9e994ff0de4e84fe149b03c706fd6403" uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" -version = "5.24.0" +version = "5.31.0" [deps.DiffEqNoiseProcess.extensions] + DiffEqNoiseProcessOptimExt = "Optim" DiffEqNoiseProcessReverseDiffExt = "ReverseDiff" [deps.DiffEqNoiseProcess.weakdeps] + Optim = "429524aa-4258-5aef-a3af-852621145aeb" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" [[deps.DiffResults]] @@ -590,9 +616,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "e7e4ce7787a74d2ec553e7afbeb1bf949caa90ab" +git-tree-sha1 = "d0250552e42bf7cc36479fd38a6e30004c9e8c2b" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.6.30" +version = "0.7.17" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -602,10 +628,13 @@ version = "0.6.30" DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceGPUArraysCoreExt = ["GPUArraysCore", "Adapt"] + DifferentiationInterfaceGTPSAExt = "GTPSA" DifferentiationInterfaceMooncakeExt = "Mooncake" - DifferentiationInterfacePolyesterForwardDiffExt = "PolyesterForwardDiff" + DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseConnectivityTracerExt = "SparseConnectivityTracer" DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" DifferentiationInterfaceStaticArraysExt = "StaticArrays" DifferentiationInterfaceSymbolicsExt = "Symbolics" @@ -613,6 +642,7 @@ version = "0.6.30" DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] [deps.DifferentiationInterface.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" @@ -622,10 +652,13 @@ version = "0.6.30" FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" @@ -634,9 +667,9 @@ version = "0.6.30" [[deps.DispatchDoctor]] deps = ["MacroTools", "Preferences"] -git-tree-sha1 = "f311fe66bfe4e38b2f1c8d1081f06920092b57aa" +git-tree-sha1 = "42cd00edaac86f941815fe557c1d01e11913e07c" uuid = "8d63f2c5-f18a-4cf2-ba9d-b3f60fc568c8" -version = "0.4.19" +version = "0.4.28" weakdeps = ["ChainRulesCore", "EnzymeCore"] [deps.DispatchDoctor.extensions] @@ -646,12 +679,13 @@ weakdeps = ["ChainRulesCore", "EnzymeCore"] [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "03aa5d44647eaec98e1920635cdfed5d5560a8b9" +git-tree-sha1 = "e421c1938fafab0165b04dc1a9dbe2a26272952c" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.117" +version = "0.25.125" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -664,22 +698,23 @@ version = "0.25.117" Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +git-tree-sha1 = "7442a5dfe1ebb773c29cc2962a8980f47221d76c" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" +version = "0.9.5" [[deps.DomainSets]] -deps = ["CompositeTypes", "IntervalSets", "LinearAlgebra", "Random", "StaticArrays"] -git-tree-sha1 = "490392af2c7d63183bfa2c8aaa6ab981c5ba7561" +deps = ["CompositeTypes", "FunctionMaps", "IntervalSets", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "4599e0cd684f3ff6cbbab73c77553a3d01a8d74d" uuid = "5b8099bc-c8ec-5219-889f-1d9e522a28bf" -version = "0.7.14" +version = "0.7.18" [deps.DomainSets.extensions] DomainSetsMakieExt = "Makie" + DomainSetsRandomExt = "Random" [deps.DomainSets.weakdeps] Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] @@ -687,42 +722,47 @@ uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.6.0" [[deps.DynamicPolynomials]] -deps = ["Future", "LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Reexport", "Test"] -git-tree-sha1 = "9a3ae38b460449cc9e7dd0cfb059c76028724627" +deps = ["LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Reexport", "StarAlgebras", "Test"] +git-tree-sha1 = "5bfabc3827dfdd164359bad6800c115a81280c00" uuid = "7c1d4256-1411-5781-91ec-d7bc3513ac07" -version = "0.6.1" +version = "0.6.6" [[deps.DynamicQuantities]] -deps = ["DispatchDoctor", "TestItems", "Tricks"] -git-tree-sha1 = "4923007a8e500f13be4c0119554776993c055ece" +deps = ["DispatchDoctor", "PrecompileTools", "TestItems", "Tricks"] +git-tree-sha1 = "7b098159d57dd03cb83fb5173cfba462d1b5e2de" uuid = "06fc5a27-2a28-4c7c-a15d-362465fb6821" -version = "1.4.0" +version = "1.12.3" [deps.DynamicQuantities.extensions] DynamicQuantitiesLinearAlgebraExt = "LinearAlgebra" DynamicQuantitiesMeasurementsExt = "Measurements" + DynamicQuantitiesRecursiveArrayToolsExt = "RecursiveArrayTools" + DynamicQuantitiesSciMLBaseExt = "SciMLBase" DynamicQuantitiesScientificTypesExt = "ScientificTypes" DynamicQuantitiesUnitfulExt = "Unitful" [deps.DynamicQuantities.weakdeps] LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" + SciMLBase = "0bca4576-84f4-4d90-8ffe-ffa030f20462" ScientificTypes = "321657f4-b219-11e9-178b-2701a2544e81" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.EnumX]] -git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" +git-tree-sha1 = "c49898e8438c828577f04b92fc9368c388ac783c" uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" -version = "1.0.4" +version = "1.0.7" [[deps.EnzymeCore]] -git-tree-sha1 = "0cdb7af5c39e92d78a0ee8d0a447d32f7593137e" +git-tree-sha1 = "c6ee69ee502060982d12dbaaf3d8fcb4e835a0d1" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.8.8" -weakdeps = ["Adapt"] +version = "0.8.20" +weakdeps = ["Adapt", "ChainRulesCore"] [deps.EnzymeCore.extensions] AdaptExt = "Adapt" + EnzymeCoreChainRulesCoreExt = "ChainRulesCore" [[deps.EpollShim_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -738,72 +778,82 @@ version = "0.1.11" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e51db81749b0777b2147fbe7b783ee79045b8e99" +git-tree-sha1 = "8f05e9a2e7c2e3eb524102bb2926c5743c07fbe1" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.6.4+3" +version = "2.8.0+0" [[deps.ExprTools]] git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" version = "0.1.10" -[[deps.Expronicon]] -deps = ["MLStyle", "Pkg", "TOML"] -git-tree-sha1 = "fc3951d4d398b5515f91d7fe5d45fc31dccb3c9b" -uuid = "6b7a57c9-7cc1-4fdf-b7f5-e857abae3636" -version = "0.8.5" +[[deps.ExpressionExplorer]] +git-tree-sha1 = "5f1c005ed214356bbe41d442cc1ccd416e510b7e" +uuid = "21656369-7473-754a-2065-74616d696c43" +version = "1.1.4" + +[[deps.ExproniconLite]] +git-tree-sha1 = "c13f0b150373771b0fdc1713c97860f8df12e6c2" +uuid = "55351af7-c7e9-48d6-89ff-24e801d99491" +version = "0.10.14" [[deps.FFMPEG]] deps = ["FFMPEG_jll"] -git-tree-sha1 = "53ebe7511fa11d33bec688a9178fac4e49eeee00" +git-tree-sha1 = "95ecf07c2eea562b5adbd0696af6db62c0f52560" uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.2" +version = "0.4.5" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libva_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "cac41ca6b2d399adfc95e51240566f8a60a80806" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.4+1" +version = "8.1.0+0" + +[[deps.FFTA]] +deps = ["AbstractFFTs", "DocStringExtensions", "LinearAlgebra", "MuladdMacro", "Primes", "Random", "Reexport"] +git-tree-sha1 = "65e55303b72f4a567a51b174dd2c47496efeb95a" +uuid = "b86e33f2-c0db-4aa1-a6e0-ab43e668529e" +version = "0.3.1" [[deps.FFTW]] -deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" +deps = ["AbstractFFTs", "FFTW_jll", "Libdl", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] +git-tree-sha1 = "97f08406df914023af55ade2f843c39e99c5d969" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.8.0" +version = "1.10.0" [[deps.FFTW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4d81ed14783ec49ce9f2e168208a12ce1815aa25" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6866aec60ef98e3164cd8d6855225684207e9dff" uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.10+3" +version = "3.3.12+0" [[deps.FastBroadcast]] -deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "ab1b34570bcdf272899062e1a56285a53ecaae08" +deps = ["ArrayInterface", "LinearAlgebra"] +git-tree-sha1 = "7feeed2c9a7fa272189a5561bebf0c4ccaedb6ec" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.3.5" +version = "1.3.2" +weakdeps = ["Polyester", "Static"] + + [deps.FastBroadcast.extensions] + FastBroadcastPolyesterExt = "Polyester" + FastBroadcastStaticExt = "Static" [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" version = "0.3.2" -[[deps.FastLapackInterface]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "cbf5edddb61a43669710cbc2241bc08b36d9e660" -uuid = "29a986be-02c6-4525-aec4-84b980013641" -version = "2.0.4" - [[deps.FastPower]] -git-tree-sha1 = "58c3431137131577a7c379d00fea00be524338fb" +git-tree-sha1 = "862831f78c7a48681a074ecc9aac09f2de563f71" uuid = "a4df4552-cc26-4903-aec0-212e50a0e84b" -version = "1.1.1" +version = "1.3.1" [deps.FastPower.extensions] FastPowerEnzymeExt = "Enzyme" FastPowerForwardDiffExt = "ForwardDiff" FastPowerMeasurementsExt = "Measurements" FastPowerMonteCarloMeasurementsExt = "MonteCarloMeasurements" + FastPowerMooncakeExt = "Mooncake" FastPowerReverseDiffExt = "ReverseDiff" FastPowerTrackerExt = "Tracker" @@ -812,34 +862,38 @@ version = "1.1.1" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" +version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] -git-tree-sha1 = "6a70198746448456524cb442b8af316927ff3e1a" +git-tree-sha1 = "2f979084d1e13948a3352cf64a25df6bd3b4dca3" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "1.13.0" -weakdeps = ["PDMats", "SparseArrays", "Statistics"] +version = "1.16.0" +weakdeps = ["PDMats", "SparseArrays", "StaticArrays", "Statistics"] [deps.FillArrays.extensions] FillArraysPDMatsExt = "PDMats" FillArraysSparseArraysExt = "SparseArrays" + FillArraysStaticArraysExt = "StaticArrays" FillArraysStatisticsExt = "Statistics" [[deps.FindFirstFunctions]] -git-tree-sha1 = "670e1d9ceaa4a3161d32fe2d2fb2177f8d78b330" +deps = ["PrecompileTools"] +git-tree-sha1 = "27b495de668ccea58de6b06d6d13181396598ea0" uuid = "64ca27bc-2ba2-4a57-88aa-44e436879224" -version = "1.4.1" +version = "1.8.0" [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "84e3a47db33be7248daa6274b287507dd6ff84e8" +git-tree-sha1 = "f7017a4f337f8df189fcce98e32b67a1298a2115" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.26.2" +version = "2.31.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -861,9 +915,9 @@ version = "0.8.5" [[deps.Fontconfig_jll]] deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] -git-tree-sha1 = "21fac3c77d7b5a9fc03b0ec503aa1a6392c34d2b" +git-tree-sha1 = "f85dac9a96a01087df6e3a749840015a0ca3817d" uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.15.0+0" +version = "2.17.1+0" [[deps.Format]] git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" @@ -872,9 +926,9 @@ version = "1.3.7" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "a2df1b776752e3f344e5116c06d75a10436ab853" +git-tree-sha1 = "cddeab6487248a39dae1a960fff0ac17b2a28888" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.38" +version = "1.3.3" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -882,15 +936,21 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "786e968a8d2fb167f2e4880baba62e0e26bd8e4e" +git-tree-sha1 = 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+988,82 @@ version = "0.2.0" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Qt6Wayland_jll", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] -git-tree-sha1 = "424c8f76017e39fdfcdbb5935a8e6742244959e8" +git-tree-sha1 = "44716a1a667cb867ee0e9ec8edc31c3e4aa5afdc" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.73.10" +version = "0.73.24" +weakdeps = ["IJulia"] + + [deps.GR.extensions] + IJuliaExt = "IJulia" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "b90934c8cb33920a8dc66736471dc3961b42ec9f" +git-tree-sha1 = "be8a1b8065959e24fdc1b51402f39f3b6f0f6653" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.73.10+0" +version = "0.73.24+0" [[deps.GenericSchur]] deps = ["LinearAlgebra", "Printf"] -git-tree-sha1 = "af49a0851f8113fcfae2ef5027c6d49d0acec39b" +git-tree-sha1 = "a694e2a57394e409f7a11ee0977362a9fafcb8c7" uuid = "c145ed77-6b09-5dd9-b285-bf645a82121e" -version = "0.5.4" +version = "0.5.6" -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" +[[deps.GettextRuntime_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll"] +git-tree-sha1 = "45288942190db7c5f760f59c04495064eedf9340" +uuid = "b0724c58-0f36-5564-988d-3bb0596ebc4a" +version = "0.22.4+0" + +[[deps.Ghostscript_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Zlib_jll"] +git-tree-sha1 = "38044a04637976140074d0b0621c1edf0eb531fd" +uuid = "61579ee1-b43e-5ca0-a5da-69d92c66a64b" +version = 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"PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "b0036b392358c80d2d2124746c2bf3d48d457938" +deps = ["Artifacts", "GettextRuntime_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] +git-tree-sha1 = "24f6def62397474a297bfcec22384101609142ed" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.82.4+0" +version = "2.86.3+0" [[deps.Glob]] -git-tree-sha1 = "97285bbd5230dd766e9ef6749b80fc617126d496" +git-tree-sha1 = "83cb0092e2792b9e3a865b6655e88f5b862607e2" uuid = "c27321d9-0574-5035-807b-f59d2c89b15c" -version = "1.3.1" +version = "1.4.0" [[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "01979f9b37367603e2848ea225918a3b3861b606" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8a6dbda1fd736d60cc477d99f2e7a042acfa46e8" uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+1" +version = "1.3.15+0" [[deps.Graphs]] -deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] -git-tree-sha1 = "1dc470db8b1131cfc7fb4c115de89fe391b9e780" +deps = ["ArnoldiMethod", "DataStructures", "Inflate", "LinearAlgebra", "Random", "SimpleTraits", "SparseArrays", "Statistics"] +git-tree-sha1 = "7eb45fe833a5b7c51cf6d89c5a841d5967e44be3" uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" -version = "1.12.0" +version = "1.14.0" +weakdeps = ["Distributed", "SharedArrays"] + + [deps.Graphs.extensions] + GraphsSharedArraysExt = "SharedArrays" [[deps.Grisu]] git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" @@ -997,21 +1072,21 @@ version = "1.0.2" [[deps.HCubature]] deps = ["Combinatorics", "DataStructures", "LinearAlgebra", "QuadGK", "StaticArrays"] -git-tree-sha1 = "19ef9f0cb324eed957b7fe7257ac84e8ed8a48ec" +git-tree-sha1 = "8ee627fb73ecba0b5254158b04d4745611b404a1" uuid = "19dc6840-f33b-545b-b366-655c7e3ffd49" -version = "1.7.0" +version = "1.8.0" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "PrecompileTools", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "c67b33b085f6e2faf8bf79a61962e7339a81129c" +git-tree-sha1 = "51059d23c8bb67911a2e6fd5130229113735fc7e" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.15" +version = "1.11.0" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll"] -git-tree-sha1 = "55c53be97790242c29031e5cd45e8ac296dadda3" +git-tree-sha1 = "f923f9a774fcf3f5cb761bfa43aeadd689714813" uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "8.5.0+0" +version = "8.5.1+0" [[deps.HashArrayMappedTries]] git-tree-sha1 = "2eaa69a7cab70a52b9687c8bf950a5a93ec895ae" @@ -1025,50 +1100,48 @@ uuid = "eafb193a-b7ab-5a9e-9068-77385905fa72" version = "0.5.3" [[deps.HostCPUFeatures]] -deps = ["BitTwiddlingConvenienceFunctions", "IfElse", "Libdl", "Static"] -git-tree-sha1 = "8e070b599339d622e9a081d17230d74a5c473293" +deps = ["BitTwiddlingConvenienceFunctions", "IfElse", "Libdl", "Preferences", "Static"] +git-tree-sha1 = "af9ab7d1f70739a47f03be78771ebda38c3c71bf" uuid = "3e5b6fbb-0976-4d2c-9146-d79de83f2fb0" -version = "0.1.17" - -[[deps.Hwloc]] -deps = ["CEnum", "Hwloc_jll", "Printf"] -git-tree-sha1 = "6a3d80f31ff87bc94ab22a7b8ec2f263f9a6a583" -uuid = "0e44f5e4-bd66-52a0-8798-143a42290a1d" -version = "3.3.0" -weakdeps = ["AbstractTrees"] - - [deps.Hwloc.extensions] - HwlocTrees = "AbstractTrees" - -[[deps.Hwloc_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "50aedf345a709ab75872f80a2779568dc0bb461b" -uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8" -version = "2.11.2+3" +version = "0.1.18" [[deps.HypergeometricFunctions]] deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "b1c2585431c382e3fe5805874bda6aea90a95de9" +git-tree-sha1 = "68c173f4f449de5b438ee67ed0c9c748dc31a2ec" uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.25" +version = "0.3.28" [[deps.IJulia]] -deps = ["Base64", "Conda", "Dates", "InteractiveUtils", "JSON", "Libdl", "Logging", "Markdown", "MbedTLS", "Pkg", "Printf", "REPL", "Random", "SoftGlobalScope", "Test", "UUIDs", "ZMQ"] -git-tree-sha1 = "1b1299f7d6617291f3d260e9f5b0250afdaac8c0" +deps = ["Base64", "Conda", "Dates", "InteractiveUtils", "Logging", "Markdown", "Pkg", "PrecompileTools", "Printf", "REPL", "Random", "SHA", "Sockets", "UUIDs", "ZMQ"] +git-tree-sha1 = "102656c4efc9737f892e1bca7e66ae374c650740" uuid = "7073ff75-c697-5162-941a-fcdaad2a7d2a" -version = "1.26.0" +version = "1.34.4" + + [deps.IJulia.extensions] + IJuliaPythonCallExt = "PythonCall" + IJuliaReviseExt = "Revise" + + [deps.IJulia.weakdeps] + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + Revise = "295af30f-e4ad-537b-8983-00126c2a3abe" [[deps.IRTools]] deps = ["InteractiveUtils", "MacroTools"] -git-tree-sha1 = "950c3717af761bc3ff906c2e8e52bd83390b6ec2" +git-tree-sha1 = "57e9ce6cf68d0abf5cb6b3b4abf9bedf05c939c0" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.14" +version = "0.4.15" [[deps.IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" version = "0.1.1" +[[deps.ImplicitDiscreteSolve]] +deps = ["ConcreteStructs", "DiffEqBase", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "OrdinaryDiffEqCore", "Reexport", "SciMLBase", "SymbolicIndexingInterface"] +git-tree-sha1 = "7cf86af21dd8c0e5538aa9536980cb83a6e5debd" +uuid = "3263718b-31ed-49cf-8a0f-35a466e8af96" +version = "1.10.0" + [[deps.Inflate]] git-tree-sha1 = "d1b1b796e47d94588b3757fe84fbf65a5ec4a80d" uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9" @@ -1079,66 +1152,67 @@ git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" version = 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IntegralsCubatureExt = "Cubature" + IntegralsDifferentiationInterfaceExt = ["ADTypes", "DifferentiationInterface", "ChainRulesCore"] IntegralsFastGaussQuadratureExt = "FastGaussQuadrature" IntegralsForwardDiffExt = "ForwardDiff" IntegralsMCIntegrationExt = "MCIntegration" + IntegralsMooncakeExt = ["Mooncake", "Zygote", "ChainRulesCore"] IntegralsZygoteExt = ["Zygote", "ChainRulesCore"] [deps.Integrals.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" Arblib = "fb37089c-8514-4489-9461-98f9c8763369" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" Cuba = "8a292aeb-7a57-582c-b821-06e4c11590b1" Cubature = "667455a9-e2ce-5579-9412-b964f529a492" + DifferentiationInterface = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" FastGaussQuadrature = "442a2c76-b920-505d-bb47-c5924d526838" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" MCIntegration = "ea1e2de9-7db7-4b42-91ee-0cd1bf6df167" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] -git-tree-sha1 = "10bd689145d2c3b2a9844005d01087cc1194e79e" +git-tree-sha1 = "ec1debd61c300961f98064cfb21287613ad7f303" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2024.2.1+0" +version = "2025.2.0+0" [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" +version = "1.11.0" [[deps.Interpolations]] -deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] -git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "65d505fa4c0d7072990d659ef3fc086eb6da8208" uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" -version = "0.15.1" -weakdeps = ["Unitful"] +version = "0.16.2" +weakdeps = ["ForwardDiff", "Unitful"] [deps.Interpolations.extensions] + InterpolationsForwardDiffExt = "ForwardDiff" InterpolationsUnitfulExt = "Unitful" [[deps.IntervalSets]] -git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" +git-tree-sha1 = "79d6bd28c8d9bccc2229784f1bd637689b256377" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.10" +version = "0.7.14" weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] @@ -1157,9 +1231,9 @@ weakdeps = ["Dates", "Test"] InverseFunctionsTestExt = "Test" [[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +git-tree-sha1 = "b2d91fe939cae05960e760110b328288867b5758" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" +version = "0.2.6" [[deps.IterTools]] git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" @@ -1172,16 +1246,16 @@ uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" [[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "71b48d857e86bf7a1838c4736545699974ce79a2" +deps = ["REPL", "Random", "fzf_jll"] +git-tree-sha1 = "82f7acdc599b65e0f8ccd270ffa1467c21cb647b" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.9" +version = "0.1.11" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "a007feb38b422fbdab534406aeca1b86823cb4d6" +git-tree-sha1 = "0533e564aae234aff59ab625543145446d8b6ec2" uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.7.0" +version = "1.7.1" [[deps.JSON]] deps = ["Dates", "Mmap", "Parsers", "Unicode"] @@ -1189,36 +1263,45 @@ git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.4" +[[deps.Jieko]] +deps = ["ExproniconLite"] +git-tree-sha1 = "2f05ed29618da60c06a87e9c033982d4f71d0b6c" +uuid = "ae98c720-c025-4a4a-838c-29b094483192" +version = "0.2.1" + [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "eac1206917768cb54957c65a615460d87b455fc1" +git-tree-sha1 = "c0c9b76f3520863909825cbecdef58cd63de705a" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.1.1+0" +version = "3.1.5+0" [[deps.JuliaFormatter]] -deps = ["CSTParser", "CommonMark", "DataStructures", "Glob", "PrecompileTools", "TOML", "Tokenize"] -git-tree-sha1 = "59cf7ad64f1b0708a4fa4369879d33bad3239b56" +deps = ["CommonMark", "Glob", "JuliaSyntax", "PrecompileTools", "TOML"] +git-tree-sha1 = "ec5e99ad66c51b6fcd3dbab6655b17118a29a588" uuid = "98e50ef6-434e-11e9-1051-2b60c6c9e899" -version = "1.0.62" +version = "2.3.0" + +[[deps.JuliaSyntax]] +git-tree-sha1 = "937da4713526b96ac9a178e2035019d3b78ead4a" +uuid = "70703baa-626e-46a2-a12c-08ffd08c73b4" +version = "0.4.10" [[deps.JumpProcesses]] -deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "Setfield", "StaticArrays", "SymbolicIndexingInterface", "UnPack"] -git-tree-sha1 = "ed3b5f80be8fc7d1b0185edb862f2273e02cbec2" +deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "PoissonRandom", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "SymbolicIndexingInterface"] +git-tree-sha1 = "2a8e5b9b90ef0da05f61904d0a39a7b1c0a83310" uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" -version = "9.14.1" -weakdeps = ["FastBroadcast"] +version = "9.28.0" +weakdeps = ["Adapt", "KernelAbstractions", "OrdinaryDiffEqCore"] -[[deps.KLU]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] -git-tree-sha1 = "07649c499349dad9f08dde4243a4c597064663e9" -uuid = "ef3ab10e-7fda-4108-b977-705223b18434" -version = "0.6.0" + [deps.JumpProcesses.extensions] + JumpProcessesKernelAbstractionsExt = ["Adapt", "KernelAbstractions"] + JumpProcessesOrdinaryDiffEqCoreExt = "OrdinaryDiffEqCore" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "MacroTools", "PrecompileTools", "Requires", "StaticArrays", "UUIDs"] -git-tree-sha1 = "b9a838cd3028785ac23822cded5126b3da394d1a" +git-tree-sha1 = "f2e76d3ced51a2a9e185abc0b97494c7273f649f" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.31" +version = "0.9.41" weakdeps = ["EnzymeCore", "LinearAlgebra", "SparseArrays"] [deps.KernelAbstractions.extensions] @@ -1227,22 +1310,22 @@ weakdeps = ["EnzymeCore", "LinearAlgebra", "SparseArrays"] SparseArraysExt = "SparseArrays" [[deps.KernelDensity]] -deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] -git-tree-sha1 = "7d703202e65efa1369de1279c162b915e245eed1" +deps = ["Distributions", "DocStringExtensions", "FFTA", "Interpolations", "StatsBase"] +git-tree-sha1 = "4260cfc991b8885bf747801fb60dd4503250e478" uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" -version = "0.6.9" +version = "0.6.11" [[deps.Krylov]] deps = ["LinearAlgebra", "Printf", "SparseArrays"] -git-tree-sha1 = "d1c697c53d3041a371c1da21305d0dc9259dbc8a" +git-tree-sha1 = "c4d19f51afc7ba2afbe32031b8f2d21b11c9e26e" uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" -version = "0.9.9" +version = "0.10.6" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "170b660facf5df5de098d866564877e119141cbd" +git-tree-sha1 = "059aabebaa7c82ccb853dd4a0ee9d17796f7e1bc" uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.2+0" +version = "3.100.3+0" [[deps.LBFGSB]] deps = ["L_BFGS_B_jll"] @@ -1252,39 +1335,15 @@ version = "0.4.1" [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "aaafe88dccbd957a8d82f7d05be9b69172e0cee3" +git-tree-sha1 = "17b94ecafcfa45e8360a4fc9ca6b583b049e4e37" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "4.0.1+0" - -[[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Unicode"] -git-tree-sha1 = "d422dfd9707bec6617335dc2ea3c5172a87d5908" -uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "9.1.3" - - [deps.LLVM.extensions] - BFloat16sExt = "BFloat16s" - - [deps.LLVM.weakdeps] - BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" - -[[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "05a8bd5a42309a9ec82f700876903abce1017dd3" -uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.34+0" +version = "4.1.0+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "78211fb6cbc872f77cad3fc0b6cf647d923f4929" +git-tree-sha1 = "eb62a3deb62fc6d8822c0c4bef73e4412419c5d8" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "18.1.7+0" - -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "1c602b1127f4751facb671441ca72715cc95938a" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.3+0" +version = "18.1.8+0" [[deps.L_BFGS_B_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] @@ -1298,20 +1357,22 @@ uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" version = "1.4.0" [[deps.Latexify]] -deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] -git-tree-sha1 = "ce5f5621cac23a86011836badfedf664a612cee4" +deps = ["Format", "Ghostscript_jll", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] +git-tree-sha1 = "44f93c47f9cd6c7e431f2f2091fcba8f01cd7e8f" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.5" +version = "0.16.10" [deps.Latexify.extensions] DataFramesExt = "DataFrames" SparseArraysExt = "SparseArrays" SymEngineExt = "SymEngine" + TectonicExt = "tectonic_jll" [deps.Latexify.weakdeps] DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" + tectonic_jll = "d7dd28d6-a5e6-559c-9131-7eb760cdacc5" [[deps.LatticeRules]] deps = ["Random"] @@ -1325,33 +1386,16 @@ git-tree-sha1 = "a9eaadb366f5493a5654e843864c13d8b107548c" uuid = "10f19ff3-798f-405d-979b-55457f8fc047" version = "0.1.17" -[[deps.LazyArrays]] -deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "bf3957638b78521f286f3b2ebaa46a475dc74817" -uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "2.3.2" - - [deps.LazyArrays.extensions] - LazyArraysBandedMatricesExt = "BandedMatrices" - LazyArraysBlockArraysExt = "BlockArrays" - LazyArraysBlockBandedMatricesExt = "BlockBandedMatrices" - LazyArraysStaticArraysExt = "StaticArrays" - - [deps.LazyArrays.weakdeps] - BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" +version = "1.11.0" [[deps.LeftChildRightSiblingTrees]] deps = ["AbstractTrees"] -git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" +git-tree-sha1 = "95ba48564903b43b2462318aa243ee79d81135ff" uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" -version = "0.2.0" +version = "0.2.1" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] @@ -1361,16 +1405,17 @@ version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.4.0+0" +version = "8.6.0+0" [[deps.LibGit2]] deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +version = "1.11.0" [[deps.LibGit2_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.6.4+0" +version = "1.7.2+0" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] @@ -1379,30 +1424,19 @@ version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" +version = "1.11.0" [[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "27ecae93dd25ee0909666e6835051dd684cc035e" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c8da7e6a91781c41a863611c7e966098d783c57a" uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+2" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll"] -git-tree-sha1 = "8be878062e0ffa2c3f67bb58a595375eda5de80b" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.11.0+0" +version = "3.4.7+0" [[deps.Libglvnd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "ff3b4b9d35de638936a525ecd36e86a8bb919d11" +git-tree-sha1 = "d36c21b9e7c172a44a10484125024495e2625ac0" uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.7.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "df37206100d39f79b3376afb6b9cee4970041c61" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.51.1+0" +version = "1.7.1+1" [[deps.Libiconv_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1412,89 +1446,125 @@ version = "1.18.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "89211ea35d9df5831fca5d33552c02bd33878419" +git-tree-sha1 = "cc3ad4faf30015a3e8094c9b5b7f19e85bdf2386" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.40.3+0" +version = "2.42.0+0" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "4ab7581296671007fc33f07a721631b8855f4b1d" +git-tree-sha1 = "f04133fe05eff1667d2054c53d59f9122383fe05" uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.7.1+0" +version = "4.7.2+0" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e888ad02ce716b319e6bdb985d2ef300e7089889" +git-tree-sha1 = "d620582b1f0cbe2c72dd1d5bd195a9ce73370ab1" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.40.3+0" +version = "2.42.0+0" [[deps.LineSearch]] -deps = ["ADTypes", "CommonSolve", "ConcreteStructs", "FastClosures", "LinearAlgebra", "MaybeInplace", "SciMLBase", "SciMLJacobianOperators", "StaticArraysCore"] -git-tree-sha1 = "97d502765cc5cf3a722120f50da03c2474efce04" +deps = ["ADTypes", "CommonSolve", "ConcreteStructs", "FastClosures", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "SciMLBase", "SciMLJacobianOperators", "StaticArraysCore"] +git-tree-sha1 = "fd58a77c92e7c8f1db25c9839127d52943a49349" uuid = "87fe0de2-c867-4266-b59a-2f0a94fc965b" -version = "0.1.4" +version = "0.1.9" weakdeps = ["LineSearches"] [deps.LineSearch.extensions] LineSearchLineSearchesExt = "LineSearches" [[deps.LineSearches]] -deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"] -git-tree-sha1 = "e4c3be53733db1051cc15ecf573b1042b3a712a1" +deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Printf"] +git-tree-sha1 = "9ea3422d03222c6de679934d1c08f0a99405aa03" uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.3.0" +version = "7.5.1" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +version = "1.11.0" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "9d5872d134bd33dd3e120767004f760770958863" +deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] +git-tree-sha1 = "42b5cb44317e89ef75dd841c9c8eba9045bf9ff0" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "2.38.0" +version = "3.75.0" [deps.LinearSolve.extensions] + LinearSolveAMDGPUExt = "AMDGPU" + LinearSolveAlgebraicMultigridExt = "AlgebraicMultigrid" + LinearSolveBLISExt = ["blis_jll", "LAPACK_jll"] LinearSolveBandedMatricesExt = "BandedMatrices" LinearSolveBlockDiagonalsExt = "BlockDiagonals" LinearSolveCUDAExt = "CUDA" LinearSolveCUDSSExt = "CUDSS" - LinearSolveEnzymeExt = "EnzymeCore" + LinearSolveCUSOLVERRFExt = ["CUSOLVERRF", "SparseArrays"] + LinearSolveChainRulesCoreExt = "ChainRulesCore" + LinearSolveCliqueTreesExt = ["CliqueTrees", "SparseArrays"] + LinearSolveElementalExt = "Elemental" + LinearSolveEnzymeExt = ["EnzymeCore", "SparseArrays"] LinearSolveFastAlmostBandedMatricesExt = "FastAlmostBandedMatrices" + LinearSolveFastLapackInterfaceExt = "FastLapackInterface" + LinearSolveForwardDiffExt = "ForwardDiff" + LinearSolveGinkgoExt = ["Ginkgo", "SparseArrays"] LinearSolveHYPREExt = "HYPRE" LinearSolveIterativeSolversExt = "IterativeSolvers" LinearSolveKernelAbstractionsExt = "KernelAbstractions" LinearSolveKrylovKitExt = "KrylovKit" LinearSolveMetalExt = "Metal" - LinearSolvePardisoExt = "Pardiso" - LinearSolveRecursiveArrayToolsExt = "RecursiveArrayTools" + LinearSolveMooncakeExt = "Mooncake" + LinearSolvePETScCSRExt = ["PETSc", "SparseArrays", "SparseMatricesCSR"] + LinearSolvePETScExt = ["PETSc", "SparseArrays"] + LinearSolvePETScMPIExt = ["PETSc", "PartitionedArrays", "SparseArrays", "SparseMatricesCSR"] + LinearSolveParUExt = ["ParU_jll", "SparseArrays"] + LinearSolvePardisoExt = ["Pardiso", "SparseArrays"] + LinearSolveRecursiveFactorizationExt = "RecursiveFactorization" + LinearSolveSparseArraysExt = "SparseArrays" + LinearSolveSparspakExt = ["SparseArrays", "Sparspak"] [deps.LinearSolve.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + AlgebraicMultigrid = "2169fc97-5a83-5252-b627-83903c6c433c" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + CUSOLVERRF = "a8cc9031-bad2-4722-94f5-40deabb4245c" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" + Elemental = "902c3f28-d1ec-5e7e-8399-a24c3845ee38" EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" + FastLapackInterface = "29a986be-02c6-4525-aec4-84b980013641" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Ginkgo = "4c8bd3c9-ead9-4b5e-a625-08f1338ba0ec" HYPRE = "b5ffcf37-a2bd-41ab-a3da-4bd9bc8ad771" IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" + LAPACK_jll = "51474c39-65e3-53ba-86ba-03b1b862ec14" Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + PETSc = "ace2c81b-2b5f-4b1e-a30d-d662738edfe0" + ParU_jll = "9e0b026c-e8ce-559c-a2c4-6a3d5c955bc9" Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" - RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" + PartitionedArrays = "5a9dfac6-5c52-46f7-8278-5e2210713be9" + RecursiveFactorization = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseMatricesCSR = "a0a7dd2c-ebf4-11e9-1f05-cf50bc540ca1" + Sparspak = "e56a9233-b9d6-4f03-8d0f-1825330902ac" + blis_jll = "6136c539-28a5-5bf0-87cc-b183200dce32" [[deps.LogDensityProblems]] deps = ["ArgCheck", "DocStringExtensions", "Random"] -git-tree-sha1 = "4e0128c1590d23a50dcdb106c7e2dbca99df85c0" +git-tree-sha1 = "d9625f27ded4ad726ceca7819394a4cc77ed25b3" uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" -version = "2.1.2" +version = "2.2.0" [[deps.LogDensityProblemsAD]] deps = ["DocStringExtensions", "LogDensityProblems"] -git-tree-sha1 = "a10e798ac8c44fe1594ad7d6e02898e16e4eafa3" +git-tree-sha1 = "7b83f3ad0a8105f79a067cafbfd124827bb398d0" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.13.0" +version = "1.13.1" [deps.LogDensityProblemsAD.extensions] LogDensityProblemsADADTypesExt = "ADTypes" @@ -1536,43 +1606,35 @@ version = "0.3.29" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" +version = "1.11.0" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] -git-tree-sha1 = "f02b56007b064fbfddb4c9cd60161b6dd0f40df3" +git-tree-sha1 = "f00544d95982ea270145636c181ceda21c4e2575" uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.1.0" - -[[deps.LoopVectorization]] -deps = ["ArrayInterface", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] -git-tree-sha1 = "8084c25a250e00ae427a379a5b607e7aed96a2dd" -uuid = "bdcacae8-1622-11e9-2a5c-532679323890" -version = "0.12.171" -weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] - - [deps.LoopVectorization.extensions] - ForwardDiffExt = ["ChainRulesCore", "ForwardDiff"] - SpecialFunctionsExt = "SpecialFunctions" +version = "1.2.0" [[deps.Lux]] -deps = ["ADTypes", "Adapt", "ArgCheck", "ArrayInterface", "ChainRulesCore", "Compat", "ConcreteStructs", "DispatchDoctor", "EnzymeCore", "FastClosures", "ForwardDiff", "Functors", "GPUArraysCore", "LinearAlgebra", "LuxCore", "LuxLib", "MLDataDevices", "MacroTools", "Markdown", "NNlib", "Optimisers", "Preferences", "Random", "Reexport", "SIMDTypes", "Setfield", "Static", "StaticArraysCore", "Statistics", "WeightInitializers"] -git-tree-sha1 = "39cc335d2601d4b0d74b209f718e7e3641771448" +deps = ["ADTypes", "Adapt", "ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DiffResults", "DispatchDoctor", "EnzymeCore", "FastClosures", "ForwardDiff", "Functors", "GPUArraysCore", "LinearAlgebra", "LuxCore", "LuxLib", "MLDataDevices", "MacroTools", "Markdown", "NNlib", "Optimisers", "PrecompileTools", "Preferences", "Random", "ReactantCore", "Reexport", "SciMLPublic", "Setfield", "Static", "StaticArraysCore", "Statistics", "UUIDs", "WeightInitializers"] +git-tree-sha1 = "b7654d9b1144792d7fa165add2e07434329e3193" uuid = "b2108857-7c20-44ae-9111-449ecde12c47" -version = "1.2.3" +version = "1.31.4" [deps.Lux.extensions] - LuxComponentArraysExt = "ComponentArrays" - LuxEnzymeExt = "Enzyme" - LuxFluxExt = "Flux" - LuxLossFunctionsExt = "LossFunctions" - LuxMLUtilsExt = "MLUtils" - LuxMPIExt = "MPI" - LuxMPINCCLExt = ["CUDA", "MPI", "NCCL"] - LuxReactantExt = ["Enzyme", "Reactant"] - LuxReverseDiffExt = ["FunctionWrappers", "ReverseDiff"] - LuxSimpleChainsExt = "SimpleChains" - LuxTrackerExt = "Tracker" - LuxZygoteExt = "Zygote" + ComponentArraysExt = "ComponentArrays" + EnzymeExt = "Enzyme" + FluxExt = "Flux" + GPUArraysExt = "GPUArrays" + LossFunctionsExt = "LossFunctions" + MLUtilsExt = "MLUtils" + MPIExt = "MPI" + MPINCCLExt = ["CUDA", "MPI", "NCCL"] + MooncakeExt = "Mooncake" + ReactantExt = ["Enzyme", "Reactant"] + ReverseDiffExt = ["FunctionWrappers", "ReverseDiff"] + SimpleChainsExt = "SimpleChains" + TrackerExt = "Tracker" + ZygoteExt = "Zygote" [deps.Lux.weakdeps] CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" @@ -1580,9 +1642,11 @@ version = "1.2.3" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" FunctionWrappers = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" + GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" LossFunctions = "30fc2ffe-d236-52d8-8643-a9d8f7c094a7" MLUtils = "f1d291b0-491e-4a28-83b9-f70985020b54" MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" NCCL = "3fe64909-d7a1-4096-9b7d-7a0f12cf0f6b" Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" @@ -1591,25 +1655,28 @@ version = "1.2.3" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.LuxCore]] -deps = ["Compat", "DispatchDoctor", "Random"] -git-tree-sha1 = "9f71aea19be890e429ee21adfeda1e63d01ec610" +deps = ["DispatchDoctor", "Random", "SciMLPublic"] +git-tree-sha1 = "9455b1e829d8dacad236143869be70b7fdb826b8" uuid = "bb33d45b-7691-41d6-9220-0943567d0623" -version = "1.1.0" +version = "1.5.3" [deps.LuxCore.extensions] - LuxCoreArrayInterfaceReverseDiffExt = ["ArrayInterface", "ReverseDiff"] - LuxCoreArrayInterfaceTrackerExt = ["ArrayInterface", "Tracker"] - LuxCoreChainRulesCoreExt = "ChainRulesCore" - LuxCoreEnzymeCoreExt = "EnzymeCore" - LuxCoreFunctorsExt = "Functors" - LuxCoreMLDataDevicesExt = "MLDataDevices" - LuxCoreReactantExt = "Reactant" - LuxCoreSetfieldExt = "Setfield" + ArrayInterfaceReverseDiffExt = ["ArrayInterface", "ReverseDiff"] + ArrayInterfaceTrackerExt = ["ArrayInterface", "Tracker"] + ChainRulesCoreExt = "ChainRulesCore" + EnzymeCoreExt = "EnzymeCore" + FluxExt = "Flux" + FunctorsExt = "Functors" + MLDataDevicesExt = ["Adapt", "MLDataDevices"] + ReactantExt = "Reactant" + SetfieldExt = "Setfield" [deps.LuxCore.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" ArrayInterface = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" Functors = "d9f16b24-f501-4c13-a1f2-28368ffc5196" MLDataDevices = "7e8f7934-dd98-4c1a-8fe8-92b47a384d40" Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" @@ -1618,24 +1685,28 @@ version = "1.1.0" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.LuxLib]] -deps = ["ArrayInterface", "ChainRulesCore", "Compat", "CpuId", "DispatchDoctor", "EnzymeCore", "FastClosures", "ForwardDiff", "Hwloc", "KernelAbstractions", "LinearAlgebra", "LuxCore", "MLDataDevices", "Markdown", "NNlib", "Polyester", "Preferences", "Random", "Reexport", "Static", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "a9e0f1477ac91623079f7a230f4de46170dc8817" +deps = ["ArrayInterface", "CPUSummary", "ChainRulesCore", "DispatchDoctor", "EnzymeCore", "FastClosures", "Functors", "KernelAbstractions", "LinearAlgebra", "LuxCore", "MLDataDevices", "Markdown", "NNlib", "Preferences", "Random", "Reexport", "SciMLPublic", "Static", "StaticArraysCore", "Statistics", "UUIDs"] +git-tree-sha1 = "6a6453d556f7bc3870d797657636b1ad5f45fd27" uuid = "82251201-b29d-42c6-8e01-566dec8acb11" -version = "1.3.7" +version = "1.15.9" [deps.LuxLib.extensions] - LuxLibAppleAccelerateExt = "AppleAccelerate" - LuxLibBLISBLASExt = "BLISBLAS" - LuxLibCUDAExt = "CUDA" - LuxLibEnzymeExt = "Enzyme" - LuxLibLoopVectorizationExt = "LoopVectorization" - LuxLibMKLExt = "MKL" - LuxLibOctavianExt = ["Octavian", "LoopVectorization"] - LuxLibReverseDiffExt = "ReverseDiff" - LuxLibSLEEFPiratesExt = "SLEEFPirates" - LuxLibTrackerAMDGPUExt = ["AMDGPU", "Tracker"] - LuxLibTrackerExt = "Tracker" - LuxLibcuDNNExt = ["CUDA", "cuDNN"] + AppleAccelerateExt = "AppleAccelerate" + BLISBLASExt = "BLISBLAS" + CUDAExt = "CUDA" + CUDAForwardDiffExt = ["CUDA", "ForwardDiff"] + EnzymeExt = "Enzyme" + ForwardDiffExt = "ForwardDiff" + LoopVectorizationExt = ["LoopVectorization", "Polyester"] + MKLExt = "MKL" + OctavianExt = ["Octavian", "LoopVectorization"] + OneHotArraysExt = ["OneHotArrays"] + ReactantExt = ["Reactant", "ReactantCore"] + ReverseDiffExt = "ReverseDiff" + SLEEFPiratesExt = "SLEEFPirates" + TrackerAMDGPUExt = ["AMDGPU", "Tracker"] + TrackerExt = "Tracker" + cuDNNExt = ["CUDA", "cuDNN"] [deps.LuxLib.weakdeps] AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" @@ -1643,67 +1714,76 @@ version = "1.3.7" BLISBLAS = "6f275bd8-fec0-4d39-945b-7e95a765fa1e" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LoopVectorization = "bdcacae8-1622-11e9-2a5c-532679323890" MKL = "33e6dc65-8f57-5167-99aa-e5a354878fb2" Octavian = "6fd5a793-0b7e-452c-907f-f8bfe9c57db4" + OneHotArrays = "0b1bfda6-eb8a-41d2-88d8-f5af5cad476f" + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" + ReactantCore = "a3311ec8-5e00-46d5-b541-4f83e724a433" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SLEEFPirates = "476501e8-09a2-5ece-8869-fb82de89a1fa" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" [[deps.MCMCChains]] -deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] -git-tree-sha1 = "cd7aee22384792c726e19f2a22dc060b886edded" +deps = ["AbstractMCMC", "AxisArrays", "DataAPI", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "060d6bc7cf60e621dfd056ed2c1a2db1e68db0fe" uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" -version = "6.0.7" +version = "7.7.0" [[deps.MCMCDiagnosticTools]] deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] -git-tree-sha1 = "a586f05dd16a50c490ed95415b2a829b8cf5d57f" +git-tree-sha1 = "2f464b68e84673727b4e4216a6254fba7da5cf4e" uuid = "be115224-59cd-429b-ad48-344e309966f0" -version = "0.3.14" +version = "0.3.17" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] -git-tree-sha1 = "f046ccd0c6db2832a9f639e2c669c6fe867e5f4f" +git-tree-sha1 = "282cadc186e7b2ae0eeadbd7a4dffed4196ae2aa" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2024.2.0+0" +version = "2025.2.0+0" [[deps.MLDataDevices]] -deps = ["Adapt", "Compat", "Functors", "Preferences", "Random"] -git-tree-sha1 = "85b47bc5a8bf0c886286638585df3bec7c9f8269" +deps = ["Adapt", "Functors", "Preferences", "Random", "SciMLPublic"] +git-tree-sha1 = "29b00f22be6fd821a214760f0224329f21998a05" uuid = "7e8f7934-dd98-4c1a-8fe8-92b47a384d40" -version = "1.5.3" +version = "1.17.10" [deps.MLDataDevices.extensions] - MLDataDevicesAMDGPUExt = "AMDGPU" - MLDataDevicesCUDAExt = "CUDA" - MLDataDevicesChainRulesCoreExt = "ChainRulesCore" - MLDataDevicesChainRulesExt = "ChainRules" - MLDataDevicesFillArraysExt = "FillArrays" - MLDataDevicesGPUArraysExt = "GPUArrays" - MLDataDevicesMLUtilsExt = "MLUtils" - MLDataDevicesMetalExt = ["GPUArrays", "Metal"] - MLDataDevicesOneHotArraysExt = "OneHotArrays" - MLDataDevicesReactantExt = "Reactant" - MLDataDevicesRecursiveArrayToolsExt = "RecursiveArrayTools" - MLDataDevicesReverseDiffExt = "ReverseDiff" - MLDataDevicesSparseArraysExt = "SparseArrays" - MLDataDevicesTrackerExt = "Tracker" - MLDataDevicesZygoteExt = "Zygote" - MLDataDevicescuDNNExt = ["CUDA", "cuDNN"] - MLDataDevicesoneAPIExt = ["GPUArrays", "oneAPI"] + AMDGPUExt = "AMDGPU" + CUDAExt = "CUDA" + ChainRulesCoreExt = "ChainRulesCore" + ChainRulesExt = "ChainRules" + ComponentArraysExt = "ComponentArrays" + FillArraysExt = "FillArrays" + GPUArraysSparseArraysExt = ["GPUArrays", "SparseArrays"] + MLUtilsExt = "MLUtils" + MetalExt = ["GPUArrays", "Metal"] + OneHotArraysExt = "OneHotArrays" + OpenCLExt = ["GPUArrays", "OpenCL"] + ReactantExt = "Reactant" + RecursiveArrayToolsExt = "RecursiveArrayTools" + ReverseDiffExt = "ReverseDiff" + SparseArraysExt = "SparseArrays" + TrackerExt = "Tracker" + ZygoteExt = "Zygote" + cuDNNExt = ["CUDA", "cuDNN"] + oneAPIExt = ["GPUArrays", "oneAPI"] [deps.MLDataDevices.weakdeps] AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" MLUtils = "f1d291b0-491e-4a28-83b9-f70985020b54" Metal = "dde4c033-4e86-420c-a63e-0dd931031962" OneHotArrays = "0b1bfda6-eb8a-41d2-88d8-f5af5cad476f" + OpenCL = "08131aa3-fb12-5dee-8b74-c09406e224a2" Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" @@ -1714,10 +1794,10 @@ version = "1.5.3" oneAPI = "8f75cd03-7ff8-4ecb-9b8f-daf728133b1b" [[deps.MLJModelInterface]] -deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] -git-tree-sha1 = "ceaff6618408d0e412619321ae43b33b40c1a733" +deps = ["InteractiveUtils", "REPL", "Random", "ScientificTypesBase", "StatisticalTraits"] +git-tree-sha1 = "c275fae2e693206b4527dd9d2382aa15359ef3ed" uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" -version = "1.11.0" +version = "1.12.1" [[deps.MLStyle]] git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8" @@ -1725,9 +1805,9 @@ uuid = "d8e11817-5142-5d16-987a-aa16d5891078" version = "0.4.17" [[deps.MacroTools]] -git-tree-sha1 = "72aebe0b5051e5143a079a4685a46da330a40472" +git-tree-sha1 = "1e0228a030642014fe5cfe68c2c0a818f9e3f522" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.15" +version = "0.5.16" [[deps.ManualMemory]] git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" @@ -1737,6 +1817,7 @@ version = "0.1.8" [[deps.Markdown]] deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +version = "1.11.0" [[deps.MaybeInplace]] deps = ["ArrayInterface", "LinearAlgebra", "MacroTools"] @@ -1750,25 +1831,19 @@ weakdeps = ["SparseArrays"] [[deps.MbedTLS]] deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] -git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" +git-tree-sha1 = "8785729fa736197687541f7053f6d8ab7fc44f92" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.9" +version = "1.1.10" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+1" +version = "2.28.6+0" [[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" +git-tree-sha1 = "b513cedd20d9c914783d8ad83d08120702bf2c77" uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" - -[[deps.MicroCollections]] -deps = ["Accessors", "BangBang", "InitialValues"] -git-tree-sha1 = "44d32db644e84c75dab479f1bc15ee76a1a3618f" -uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.2.0" +version = "0.3.3" [[deps.Missings]] deps = ["DataAPI"] @@ -1778,28 +1853,31 @@ version = "1.2.0" [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" +version = "1.11.0" [[deps.ModelingToolkit]] -deps = ["AbstractTrees", "ArrayInterface", "BlockArrays", "Combinatorics", "CommonSolve", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "DiffRules", "Distributed", "Distributions", "DocStringExtensions", "DomainSets", "DynamicQuantities", "EnumX", "ExprTools", "Expronicon", "FindFirstFunctions", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "InteractiveUtils", "JuliaFormatter", "JumpProcesses", "Latexify", "Libdl", "LinearAlgebra", "MLStyle", "NaNMath", "NonlinearSolve", "OffsetArrays", "OrderedCollections", "PrecompileTools", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "URIs", "UnPack", "Unitful"] -git-tree-sha1 = "4a64a7dfd9130591536adf723bb79038b02351c0" +deps = ["ADTypes", "AbstractTrees", "ArrayInterface", "BlockArrays", "ChainRulesCore", "Combinatorics", "CommonSolve", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "DiffRules", "DifferentiationInterface", "Distributed", "Distributions", "DocStringExtensions", "DomainSets", "DynamicQuantities", "EnumX", "ExprTools", "FillArrays", "FindFirstFunctions", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "ImplicitDiscreteSolve", "InteractiveUtils", "JuliaFormatter", "JumpProcesses", "Latexify", "Libdl", "LinearAlgebra", "MLStyle", "Moshi", "NaNMath", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "URIs", "UnPack", "Unitful"] +git-tree-sha1 = "18a2e492c5206365b41310d08af5286fbec0a508" uuid = "961ee093-0014-501f-94e3-6117800e7a78" -version = "9.60.0" +version = "10.32.1" [deps.ModelingToolkit.extensions] MTKBifurcationKitExt = "BifurcationKit" - MTKChainRulesCoreExt = "ChainRulesCore" + MTKCasADiDynamicOptExt = "CasADi" MTKDeepDiffsExt = "DeepDiffs" - MTKHomotopyContinuationExt = "HomotopyContinuation" + MTKFMIExt = "FMI" MTKInfiniteOptExt = "InfiniteOpt" MTKLabelledArraysExt = "LabelledArrays" + MTKPyomoDynamicOptExt = "Pyomo" [deps.ModelingToolkit.weakdeps] BifurcationKit = "0f109fa4-8a5d-4b75-95aa-f515264e7665" - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + CasADi = "c49709b8-5c63-11e9-2fb2-69db5844192f" DeepDiffs = "ab62b9b5-e342-54a8-a765-a90f495de1a6" - HomotopyContinuation = "f213a82b-91d6-5c5d-acf7-10f1c761b327" + FMI = "14a09403-18e3-468f-ad8a-74f8dda2d9ac" InfiniteOpt = "20393b10-9daf-11e9-18c9-8db751c92c57" LabelledArrays = "2ee39098-c373-598a-b85f-a56591580800" + Pyomo = "0e8e1daf-01b5-4eba-a626-3897743a3816" [[deps.MonteCarloIntegration]] deps = ["Distributions", "QuasiMonteCarlo", "Random"] @@ -1809,11 +1887,12 @@ version = "0.2.0" [[deps.MonteCarloMeasurements]] deps = ["Distributions", "GenericSchur", "LinearAlgebra", "MacroTools", "Random", "SLEEFPirates", "StaticArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "ccd04096ea75caef68aa1ac72588e08f1f90f863" +git-tree-sha1 = "5fa0ef6af2ff71912dd1675146b27818170a4753" uuid = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" -version = "1.4.0" +version = "1.5.2" [deps.MonteCarloMeasurements.extensions] + AccessorsExtraExt = "AccessorsExtra" ForwardDiffExt = "ForwardDiff" MakieExt = "Makie" MeasurementsExt = "Measurements" @@ -1821,15 +1900,22 @@ version = "1.4.0" UnitfulExt = "Unitful" [deps.MonteCarloMeasurements.weakdeps] + AccessorsExtra = "33016aad-b69d-45be-9359-82a41f556fd4" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" +[[deps.Moshi]] +deps = ["ExproniconLite", "Jieko"] +git-tree-sha1 = "53f817d3e84537d84545e0ad749e483412dd6b2a" +uuid = "2e0e35c7-a2e4-4343-998d-7ef72827ed2d" +version = "0.3.7" + [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2023.1.10" +version = "2023.12.12" [[deps.MuladdMacro]] git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" @@ -1837,34 +1923,38 @@ uuid = "46d2c3a1-f734-5fdb-9937-b9b9aeba4221" version = "0.2.4" [[deps.MultivariatePolynomials]] -deps = ["ChainRulesCore", "DataStructures", "LinearAlgebra", "MutableArithmetics"] -git-tree-sha1 = "8d39779e29f80aa6c071e7ac17101c6e31f075d7" +deps = ["DataStructures", "LinearAlgebra", "MutableArithmetics", "StarAlgebras"] +git-tree-sha1 = "4838893d9b035c2f6967c0d533350e1755b58a70" uuid = "102ac46a-7ee4-5c85-9060-abc95bfdeaa3" -version = "0.5.7" +version = "0.5.19" +weakdeps = ["ChainRulesCore"] + + [deps.MultivariatePolynomials.extensions] + MultivariatePolynomialsChainRulesCoreExt = "ChainRulesCore" [[deps.Mustache]] deps = ["Printf", "Tables"] -git-tree-sha1 = "3b2db451a872b20519ebb0cec759d3d81a1c6bcb" +git-tree-sha1 = "3cbd5dda543bc59f2e482607ccf84b633724fc32" uuid = "ffc61752-8dc7-55ee-8c37-f3e9cdd09e70" -version = "1.0.20" +version = "1.0.21" [[deps.MutableArithmetics]] deps = ["LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "43122df26d27424b23577d59e2d8020f28386516" +git-tree-sha1 = "7c25249fc13a070f5ba433c50e21e22bb33c6fb0" uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" -version = "1.6.2" +version = "1.7.1" [[deps.NLSolversBase]] -deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] -git-tree-sha1 = "a0b464d183da839699f4c79e7606d9d186ec172c" +deps = ["ADTypes", "DifferentiationInterface", "Distributed", "FiniteDiff", "ForwardDiff"] +git-tree-sha1 = "25a6638571a902ecfb1ae2a18fc1575f86b1d4df" uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" -version = "7.8.3" +version = "7.10.0" [[deps.NNlib]] -deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "bdc9d30f151590aca0af22690f5ab7dc18a551cb" +deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Random", "ScopedValues", "Statistics"] +git-tree-sha1 = "78cd28dbd5f03f99ccaba45c987107adcb61c115" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.27" +version = "0.9.34" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1873,6 +1963,8 @@ version = "0.9.27" NNlibEnzymeCoreExt = "EnzymeCore" NNlibFFTWExt = "FFTW" NNlibForwardDiffExt = "ForwardDiff" + NNlibMetalExt = "Metal" + NNlibSpecialFunctionsExt = "SpecialFunctions" [deps.NNlib.weakdeps] AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" @@ -1880,13 +1972,15 @@ version = "0.9.27" EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" FFTW = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b" cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" [[deps.NaNMath]] deps = ["OpenLibm_jll"] -git-tree-sha1 = "030ea22804ef91648f29b7ad3fc15fa49d0e6e71" +git-tree-sha1 = "9b8215b1ee9e78a293f99797cd31375471b2bcae" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.3" +version = "1.1.3" [[deps.NaturalSort]] git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" @@ -1897,11 +1991,17 @@ version = "1.0.0" uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" +[[deps.NeuralOperators]] +deps = ["ArgCheck", "ChainRulesCore", "ConcreteStructs", "FFTW", "Lux", "LuxCore", "LuxLib", "MLDataDevices", "NNlib", "Random", "Static", "WeightInitializers"] +git-tree-sha1 = "04644880fa80a3151bce9ba59d75eefdfef9d42d" +uuid = "ea5c82af-86e5-48da-8ee1-382d6ad7af4b" +version = "0.5.3" + [[deps.NeuralPDE]] -deps = ["ADTypes", "Adapt", "AdvancedHMC", "ArrayInterface", "ChainRulesCore", "ComponentArrays", "ConcreteStructs", "Cubature", "Distributions", "DocStringExtensions", "DomainSets", "ForwardDiff", "Functors", "Integrals", "IntervalSets", "LinearAlgebra", "LogDensityProblems", "Lux", "LuxCore", "MCMCChains", "MLDataDevices", "ModelingToolkit", "MonteCarloMeasurements", "Optimisers", "Optimization", "OptimizationOptimisers", "Printf", "QuasiMonteCarlo", "Random", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Statistics", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "WeightInitializers", "Zygote"] -git-tree-sha1 = "eaf81ffa96c0b44ebbce6f396055d9ff1052715f" +deps = ["ADTypes", "Adapt", "AdvancedHMC", "ArrayInterface", "ChainRulesCore", "ComponentArrays", "ConcreteStructs", "Cubature", "Distributions", "DocStringExtensions", "DomainSets", "ForwardDiff", "Functors", "Integrals", "IntervalSets", "LinearAlgebra", "LogDensityProblems", "Lux", "LuxCore", "MCMCChains", "MLDataDevices", "ModelingToolkit", "MonteCarloMeasurements", "NeuralOperators", "Optimisers", "Optimization", "OptimizationOptimisers", "Printf", "QuasiMonteCarlo", "Random", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Statistics", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "WeightInitializers", "Zygote"] +git-tree-sha1 = "6713c23c8a2bdaaf9e1459e06ced7901b8285ced" uuid = "315f7962-48a3-4962-8226-d0f33b1235f0" -version = "5.17.0" +version = "5.20.0" [deps.NeuralPDE.extensions] NeuralPDETensorBoardLoggerExt = "TensorBoardLogger" @@ -1909,124 +2009,86 @@ version = "5.17.0" [deps.NeuralPDE.weakdeps] TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" -[[deps.NonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DiffEqBase", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseMatrixColorings", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "d0caebdb5a31e1a11ca9f7f189cdbf341ac89f0e" -uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "4.3.0" - - [deps.NonlinearSolve.extensions] - NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" - NonlinearSolveFixedPointAccelerationExt = "FixedPointAcceleration" - NonlinearSolveLeastSquaresOptimExt = "LeastSquaresOptim" - NonlinearSolveMINPACKExt = "MINPACK" - NonlinearSolveNLSolversExt = "NLSolvers" - NonlinearSolveNLsolveExt = ["NLsolve", "LineSearches"] - NonlinearSolvePETScExt = ["PETSc", "MPI"] - NonlinearSolveSIAMFANLEquationsExt = "SIAMFANLEquations" - NonlinearSolveSpeedMappingExt = "SpeedMapping" - NonlinearSolveSundialsExt = "Sundials" - - [deps.NonlinearSolve.weakdeps] - FastLevenbergMarquardt = "7a0df574-e128-4d35-8cbd-3d84502bf7ce" - FixedPointAcceleration = "817d07cb-a79a-5c30-9a31-890123675176" - LeastSquaresOptim = "0fc2ff8b-aaa3-5acd-a817-1944a5e08891" - LineSearches = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" - MINPACK = "4854310b-de5a-5eb6-a2a5-c1dee2bd17f9" - MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" - NLSolvers = "337daf1e-9722-11e9-073e-8b9effe078ba" - NLsolve = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" - PETSc = "ace2c81b-2b5f-4b1e-a30d-d662738edfe0" - SIAMFANLEquations = "084e46ad-d928-497d-ad5e-07fa361a48c4" - SpeedMapping = "f1835b91-879b-4a3f-a438-e4baacf14412" - Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" - [[deps.NonlinearSolveBase]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "LinearAlgebra", "Markdown", "MaybeInplace", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLOperators", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "5bca24ce7b0c034dcbdc6ad6d658b02e0eed566e" +deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "LinearAlgebra", "Markdown", "MaybeInplace", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] +git-tree-sha1 = "9323e063ce69851b28e5c96539b2e2024f9a7e4c" uuid = "be0214bd-f91f-a760-ac4e-3421ce2b2da0" -version = "1.4.0" +version = "2.11.2" [deps.NonlinearSolveBase.extensions] NonlinearSolveBaseBandedMatricesExt = "BandedMatrices" - NonlinearSolveBaseDiffEqBaseExt = "DiffEqBase" + NonlinearSolveBaseChainRulesCoreExt = "ChainRulesCore" + NonlinearSolveBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] NonlinearSolveBaseForwardDiffExt = "ForwardDiff" NonlinearSolveBaseLineSearchExt = "LineSearch" NonlinearSolveBaseLinearSolveExt = "LinearSolve" + NonlinearSolveBaseMooncakeExt = "Mooncake" + NonlinearSolveBaseReverseDiffExt = "ReverseDiff" NonlinearSolveBaseSparseArraysExt = "SparseArrays" NonlinearSolveBaseSparseMatrixColoringsExt = "SparseMatrixColorings" + NonlinearSolveBaseTrackerExt = "Tracker" [deps.NonlinearSolveBase.weakdeps] BandedMatrices = "aae01518-5342-5314-be14-df237901396f" - DiffEqBase = "2b5f629d-d688-5b77-993f-72d75c75574e" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" LineSearch = "87fe0de2-c867-4266-b59a-2f0a94fc965b" LinearSolve = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.NonlinearSolveFirstOrder]] -deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConcreteStructs", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLJacobianOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = 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"4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.4.3" +version = "1.6.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "7493f61f55a6cce7325f197443aa80d32554ba10" +git-tree-sha1 = "2ac022577e5eac7da040de17776d51bb770cd895" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.0.15+3" +version = "3.5.6+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -2035,10 +2097,10 @@ uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" version = "0.5.6+0" [[deps.Optim]] -deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] -git-tree-sha1 = "ab7edad78cdef22099f43c54ef77ac63c2c9cc64" +deps = ["Compat", "EnumX", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] +git-tree-sha1 = "48968edaf014f67e58fe4c8a4ce72d392aed3294" uuid = "429524aa-4258-5aef-a3af-852621145aeb" -version = "1.10.0" +version = "1.13.3" [deps.Optim.extensions] OptimMOIExt = "MathOptInterface" @@ -2047,22 +2109,32 @@ version = "1.10.0" MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" [[deps.Optimisers]] -deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "c9ff5c686240c31eb8570b662dd1f66f4b183116" +deps = ["ChainRulesCore", "ConstructionBase", "Functors", "LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "36b5d2b9dd06290cd65fcf5bdbc3a551ed133af5" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.4" +version = "0.4.7" + + [deps.Optimisers.extensions] + OptimisersAdaptExt = ["Adapt"] + OptimisersEnzymeCoreExt = "EnzymeCore" + OptimisersReactantExt = "Reactant" + + [deps.Optimisers.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + Reactant = 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"SparseConnectivityTracer", "SparseMatrixColorings"] -git-tree-sha1 = "9e8569bc1c511c425fdc63f7ee41f2da057f8662" +deps = ["ADTypes", "ArrayInterface", "DifferentiationInterface", "DocStringExtensions", "FastClosures", "LinearAlgebra", "PDMats", "Reexport", "SciMLBase", "SparseArrays", "SparseConnectivityTracer", "SparseMatrixColorings"] +git-tree-sha1 = "a4d72b85ec4b0ef7aca1a1e067406fcc673addae" uuid = "bca83a33-5cc9-4baa-983d-23429ab6bcbb" -version = "2.4.0" +version = "2.14.0" [deps.OptimizationBase.extensions] OptimizationEnzymeExt = "Enzyme" @@ -2088,26 +2160,40 @@ version = "2.4.0" [[deps.OptimizationOptimJL]] deps = ["Optim", "Optimization", "PrecompileTools", "Reexport", "SparseArrays"] -git-tree-sha1 = "980ec7190741db164a2923dc42d6f1e7ce2cc434" +git-tree-sha1 = "d9e2cca329ce969a3dc26c9278d77bfeff7012ef" uuid = "36348300-93cb-4f02-beb5-3c3902f8871e" -version = "0.4.1" +version = "0.4.5" [[deps.OptimizationOptimisers]] deps = ["Optimisers", "Optimization", "Printf", "ProgressLogging", "Reexport"] -git-tree-sha1 = "4a2c2d4bb4eb6bbab8e2871657372cf743ff50d5" +git-tree-sha1 = "ea6169605fe93e02df87874f388279ae766175d9" uuid = "42dfb2eb-d2b4-4451-abcd-913932933ac1" -version = "0.3.7" +version = "0.3.11" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6703a85cb3781bd5909d48730a67205f3f31a575" +git-tree-sha1 = "e2bb57a313a74b8104064b7efd01406c0a50d2ff" uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.3+0" +version = "1.6.1+0" [[deps.OrderedCollections]] -git-tree-sha1 = "12f1439c4f986bb868acda6ea33ebc78e19b95ad" +git-tree-sha1 = "05868e21324cede2207c6f0f466b4bfef6d5e7ee" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.7.0" +version = "1.8.1" + +[[deps.OrdinaryDiffEqCore]] +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ConcreteStructs", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "Polyester", "PrecompileTools", "Preferences", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Static", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "b85ff46f8ca4c8aa5aac6c22f99e3b54abba8b51" +uuid = "bbf590c4-e513-4bbe-9b18-05decba2e5d8" +version = "3.28.0" + + [deps.OrdinaryDiffEqCore.extensions] + OrdinaryDiffEqCoreMooncakeExt = "Mooncake" + OrdinaryDiffEqCoreSparseArraysExt = "SparseArrays" + + [deps.OrdinaryDiffEqCore.weakdeps] + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -2116,43 +2202,40 @@ version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "966b85253e959ea89c53a9abebbf2e964fbf593b" +git-tree-sha1 = 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[deps.Pkg.extensions] + REPLExt = "REPL" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -2162,15 +2245,15 @@ version = "3.3.0" [[deps.PlotUtils]] deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "StableRNGs", "Statistics"] -git-tree-sha1 = "3ca9a356cd2e113c420f2c13bea19f8d3fb1cb18" +git-tree-sha1 = "26ca162858917496748aad52bb5d3be4d26a228a" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.4.3" +version = "1.4.4" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "TOML", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] -git-tree-sha1 = "dae01f8c2e069a683d3a6e17bbae5070ab94786f" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "TOML", "UUIDs", "UnicodeFun", "Unzip"] +git-tree-sha1 = "cb20a4eacda080e517e4deb9cfb6c7c518131265" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.40.9" +version = "1.41.6" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -2187,16 +2270,16 @@ version = "1.40.9" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.PoissonRandom]] -deps = ["Random"] -git-tree-sha1 = "a0f1159c33f846aa77c3f30ebbc69795e5327152" +deps = ["LogExpFunctions", "Random"] +git-tree-sha1 = "67afbcbe9e184d6729a92a022147ed4cf972ca7b" uuid = 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"d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "0.4.24" +version = "0.4.34" [deps.PreallocationTools.extensions] + PreallocationToolsForwardDiffExt = "ForwardDiff" PreallocationToolsReverseDiffExt = "ReverseDiff" + PreallocationToolsSparseConnectivityTracerExt = "SparseConnectivityTracer" [deps.PreallocationTools.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseConnectivityTracer = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" [[deps.PrecompileTools]] deps = ["Preferences"] @@ -2230,72 +2317,85 @@ version = "1.2.1" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" +git-tree-sha1 = "8b770b60760d4451834fe79dd483e318eee709c4" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.4.3" +version = "1.5.2" [[deps.PrettyTables]] -deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "1101cd475833706e4d0e7b122218257178f48f34" +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "REPL", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "624de6279ab7d94fc9f672f0068107eb6619732c" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "2.4.0" +version = "3.3.2" + + [deps.PrettyTables.extensions] + PrettyTablesTypstryExt = "Typstry" + + [deps.PrettyTables.weakdeps] + Typstry = "f0ed7684-a786-439e-b1e3-3b82803b501e" [[deps.Primes]] deps = ["IntegerMathUtils"] -git-tree-sha1 = "cb420f77dc474d23ee47ca8d14c90810cafe69e7" +git-tree-sha1 = "25cdd1d20cd005b52fc12cb6be3f75faaf59bb9b" uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" -version = "0.5.6" +version = "0.5.7" [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" +version = "1.11.0" [[deps.ProgressLogging]] deps = ["Logging", "SHA", "UUIDs"] -git-tree-sha1 = "80d919dee55b9c50e8d9e2da5eeafff3fe58b539" +git-tree-sha1 = "f0803bc1171e455a04124affa9c21bba5ac4db32" uuid = "33c8b6b6-d38a-422a-b730-caa89a2f386c" -version = "0.1.4" +version = "0.1.6" [[deps.ProgressMeter]] deps = ["Distributed", "Printf"] -git-tree-sha1 = "8f6bc219586aef8baf0ff9a5fe16ee9c70cb65e4" +git-tree-sha1 = "fbb92c6c56b34e1a2c4c36058f68f332bec840e7" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.10.2" +version = "1.11.0" [[deps.PtrArrays]] -git-tree-sha1 = "1d36ef11a9aaf1e8b74dacc6a731dd1de8fd493d" +git-tree-sha1 = "4fbbafbc6251b883f4d2705356f3641f3652a7fe" uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" -version = "1.3.0" +version = "1.4.0" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "492601870742dcd38f233b23c3ec629628c1d724" +git-tree-sha1 = "d7a4bff94f42208ce3cf6bc8e4e7d1d663e7ee8b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.7.1+1" +version = "6.10.2+1" [[deps.Qt6Declarative_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll", "Qt6ShaderTools_jll"] -git-tree-sha1 = "e5dd466bf2569fe08c91a2cc29c1003f4797ac3b" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll", "Qt6ShaderTools_jll", "Qt6Svg_jll"] +git-tree-sha1 = "d5b7dd0e226774cbd87e2790e34def09245c7eab" uuid = "629bc702-f1f5-5709-abd5-49b8460ea067" -version = "6.7.1+2" +version = "6.10.2+1" [[deps.Qt6ShaderTools_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll"] -git-tree-sha1 = "1a180aeced866700d4bebc3120ea1451201f16bc" +git-tree-sha1 = "4d85eedf69d875982c46643f6b4f66919d7e157b" uuid = "ce943373-25bb-56aa-8eca-768745ed7b5a" -version = "6.7.1+1" +version = "6.10.2+1" + +[[deps.Qt6Svg_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll"] +git-tree-sha1 = "81587ff5ff25a4e1115ce191e36285ede0334c9d" +uuid = "6de9746b-f93d-5813-b365-ba18ad4a9cf3" +version = "6.10.2+0" [[deps.Qt6Wayland_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll", "Qt6Declarative_jll"] -git-tree-sha1 = "729927532d48cf79f49070341e1d918a65aba6b0" +git-tree-sha1 = "672c938b4b4e3e0169a07a5f227029d4905456f2" uuid = "e99dba38-086e-5de3-a5b1-6e4c66e897c3" -version = "6.7.1+1" +version = "6.10.2+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "cda3b045cf9ef07a08ad46731f5a3165e56cf3da" +git-tree-sha1 = "5e8e8b0ab68215d7a2b14b9921a946fee794749e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.11.1" +version = "2.11.3" [deps.QuadGK.extensions] QuadGKEnzymeExt = "Enzyme" @@ -2304,34 +2404,24 @@ version = "2.11.1" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" [[deps.QuasiMonteCarlo]] -deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] -git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" +deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "PrecompileTools", "Primes", "Random", "Sobol"] +git-tree-sha1 = "017a6731a1754173013b98f458adb631e368a9d2" uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" -version = "0.3.3" +version = "0.3.5" weakdeps = ["Distributions"] [deps.QuasiMonteCarlo.extensions] QuasiMonteCarloDistributionsExt = "Distributions" [[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" +version = "1.11.0" [[deps.Random]] deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" - -[[deps.Random123]] -deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" -uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.7.0" - -[[deps.RandomNumbers]] -deps = ["Random"] -git-tree-sha1 = "c6ec94d2aaba1ab2ff983052cf6a606ca5985902" -uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.6.0" +version = "1.11.0" [[deps.RangeArrays]] git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" @@ -2348,6 +2438,12 @@ weakdeps = ["FixedPointNumbers"] [deps.Ratios.extensions] RatiosFixedPointNumbersExt = "FixedPointNumbers" +[[deps.ReactantCore]] +deps = ["ExpressionExplorer", "MacroTools"] +git-tree-sha1 = "5b9e0fe7fb2cf3794fd96ac32bf2732aa4bb9776" +uuid = "a3311ec8-5e00-46d5-b541-4f83e724a433" +version = "0.1.19" + [[deps.RealDot]] deps = ["LinearAlgebra"] git-tree-sha1 = "9f0a1b71baaf7650f4fa8a1d168c7fb6ee41f0c9" @@ -2367,39 +2463,41 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "32f824db4e5bab64e25a12b22483a30a6b813d08" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "LinearAlgebra", "PrecompileTools", "RecipesBase", "StaticArraysCore", "SymbolicIndexingInterface"] +git-tree-sha1 = "d0282d612f22dcad7b81cf487b746e63aa2a6709" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.27.4" +version = "3.54.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsFastBroadcastPolyesterExt = ["FastBroadcast", "Polyester"] RecursiveArrayToolsForwardDiffExt = "ForwardDiff" + RecursiveArrayToolsKernelAbstractionsExt = "KernelAbstractions" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] + RecursiveArrayToolsStatisticsExt = "Statistics" RecursiveArrayToolsStructArraysExt = "StructArrays" + RecursiveArrayToolsTablesExt = ["Tables"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" -[[deps.RecursiveFactorization]] -deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "PrecompileTools", "StrideArraysCore", "TriangularSolve"] -git-tree-sha1 = "6db1a75507051bc18bfa131fbc7c3f169cc4b2f6" -uuid = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" -version = "0.2.23" - [[deps.Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" uuid = "189a3867-3050-52da-a836-e630ba90ab69" @@ -2413,21 +2511,21 @@ version = "1.0.1" [[deps.Requires]] deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" +git-tree-sha1 = "62389eeff14780bfe55195b7204c0d8738436d64" uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" +version = "1.3.1" [[deps.ResettableStacks]] deps = ["StaticArrays"] -git-tree-sha1 = "256eeeec186fa7f26f2801732774ccf277f05db9" +git-tree-sha1 = "31c086583c92ab32d82ebef0d09fbcd6dd2c54a7" uuid = "ae5879a3-cd67-5da8-be7f-38c6eb64a37b" -version = "1.1.1" +version = "1.2.0" [[deps.Rmath]] deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "852bd0f55565a9e973fcfee83a84413270224dc4" +git-tree-sha1 = "5b3d50eb374cea306873b371d3f8d3915a018f0b" uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.8.0" +version = "0.9.0" [[deps.Rmath_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2437,15 +2535,19 @@ version = "0.5.1+0" [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00" +git-tree-sha1 = "cfcdc949c4660544ab0fdeed169561cb22f835f4" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.13" +version = "0.5.18" [[deps.SCCNonlinearSolve]] deps = ["CommonSolve", "PrecompileTools", "Reexport", "SciMLBase", "SymbolicIndexingInterface"] -git-tree-sha1 = "0caf35e2204c9045ca203b147b5dac4fa8e1cf20" +git-tree-sha1 = "521a298294a6fd11068df0148b4d57bb31550453" uuid = "9dfe8606-65a1-4bb3-9748-cb89d1561431" -version = "1.0.0" +version = "1.13.0" +weakdeps = ["ChainRulesCore"] + + [deps.SCCNonlinearSolve.extensions] + SCCNonlinearSolveChainRulesCoreExt = "ChainRulesCore" [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" @@ -2463,28 +2565,48 @@ uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" version = "0.6.43" [[deps.SciMLBase]] -deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "a263684f4134d50fe1863184281cc04a787a96a2" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Moshi", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] +git-tree-sha1 = "bdbc7c751d36fdb104d437361950d884d489af85" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.71.0" +version = "2.153.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseDifferentiationInterfaceExt = "DifferentiationInterface" + SciMLBaseDistributionsExt = "Distributions" + SciMLBaseEnzymeExt = "Enzyme" + SciMLBaseForwardDiffExt = "ForwardDiff" + SciMLBaseMLStyleExt = "MLStyle" SciMLBaseMakieExt = "Makie" + SciMLBaseMeasurementsExt = "Measurements" + SciMLBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" + SciMLBaseMooncakeExt = "Mooncake" SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" SciMLBasePythonCallExt = "PythonCall" SciMLBaseRCallExt = "RCall" - SciMLBaseZygoteExt = "Zygote" + SciMLBaseReverseDiffExt = "ReverseDiff" + SciMLBaseTrackerExt = "Tracker" + SciMLBaseZygoteExt = ["Zygote", "ChainRulesCore"] [deps.SciMLBase.weakdeps] ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DifferentiationInterface = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" + Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MLStyle = "d8e11817-5142-5d16-987a-aa16d5891078" Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" RCall = "6f49c342-dc21-5d91-9882-a32aef131414" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLBenchmarks]] @@ -2495,56 +2617,76 @@ version = "0.1.3" [[deps.SciMLJacobianOperators]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DifferentiationInterface", "FastClosures", "LinearAlgebra", "SciMLBase", "SciMLOperators"] -git-tree-sha1 = "f66048bb969e67bd7d1bdd03cd0b81219642bbd0" +git-tree-sha1 = "7156a5b51cba1bea33a82a036939ead4131f92bc" uuid = "19f34311-ddf3-4b8b-af20-060888a46c0e" -version = "0.1.1" +version = "0.1.13" + +[[deps.SciMLLogging]] +deps = ["Logging", "LoggingExtras", "Preferences"] +git-tree-sha1 = "0161be062570af4042cf6f69e3d5d0b0555b6927" +uuid = "a6db7da4-7206-11f0-1eab-35f2a5dbe1d1" +version = "1.9.1" + + [deps.SciMLLogging.extensions] + SciMLLoggingTracyExt = "Tracy" + + [deps.SciMLLogging.weakdeps] + Tracy = "e689c965-62c8-4b79-b2c5-8359227902fd" [[deps.SciMLOperators]] -deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools"] -git-tree-sha1 = "6149620767866d4b0f0f7028639b6e661b6a1e44" +deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra"] +git-tree-sha1 = "0e34162268883db01c04f988895a80d0659071bb" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "0.3.12" +version = "1.17.0" weakdeps = ["SparseArrays", "StaticArraysCore"] [deps.SciMLOperators.extensions] SciMLOperatorsSparseArraysExt = "SparseArrays" SciMLOperatorsStaticArraysCoreExt = "StaticArraysCore" +[[deps.SciMLPublic]] +git-tree-sha1 = "0ba076dbdce87ba230fff48ca9bca62e1f345c9b" +uuid = "431bcebd-1456-4ced-9d72-93c2757fff0b" +version = "1.0.1" + [[deps.SciMLStructures]] -deps = ["ArrayInterface"] -git-tree-sha1 = "0444a37a25fab98adbd90baa806ee492a3af133a" +deps = ["ArrayInterface", "PrecompileTools"] +git-tree-sha1 = "607f6867d0b0553e98fc7f725c9f9f13b4d01a32" uuid = "53ae85a6-f571-4167-b2af-e1d143709226" -version = "1.6.1" +version = "1.10.0" [[deps.ScientificTypesBase]] -git-tree-sha1 = 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["ChainRulesCore", "LogExpFunctions", "NNlib", "NaNMath", "SpecialFunctions"] [deps.SparseConnectivityTracer.extensions] - SparseConnectivityTracerDataInterpolationsExt = "DataInterpolations" + SparseConnectivityTracerChainRulesCoreExt = "ChainRulesCore" SparseConnectivityTracerLogExpFunctionsExt = "LogExpFunctions" SparseConnectivityTracerNNlibExt = "NNlib" SparseConnectivityTracerNaNMathExt = "NaNMath" SparseConnectivityTracerSpecialFunctionsExt = "SpecialFunctions" - [deps.SparseConnectivityTracer.weakdeps] - DataInterpolations = "82cc6244-b520-54b8-b5a6-8a565e85f1d0" - LogExpFunctions = "2ab3a3ac-af41-5b50-aa03-7779005ae688" - NNlib = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" - NaNMath = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" - SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b" - [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" @@ -2639,54 +2763,60 @@ uuid = 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["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Static"] -git-tree-sha1 = "96381d50f1ce85f2663584c8e886a6ca97e60554" +deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "SciMLPublic", "Static"] +git-tree-sha1 = "2a635e15d5035c53b345077c947f31ff91744078" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.8.0" +version = "1.10.0" weakdeps = ["OffsetArrays", "StaticArrays"] [deps.StaticArrayInterface.extensions] @@ -2695,9 +2825,9 @@ weakdeps = ["OffsetArrays", "StaticArrays"] [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "47091a0340a675c738b1304b58161f3b0839d454" +git-tree-sha1 = "246a8bb2e6667f832eea063c3a56aef96429a3db" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.10" +version = "1.9.18" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -2705,38 +2835,43 @@ weakdeps = ["ChainRulesCore", "Statistics"] StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] -git-tree-sha1 = "192954ef1208c7019899fbf8049e717f92959682" +git-tree-sha1 = "6ab403037779dae8c514bad259f32a447262455a" uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.4.3" +version = "1.4.4" [[deps.StatisticalTraits]] deps = ["ScientificTypesBase"] -git-tree-sha1 = "542d979f6e756f13f862aa00b224f04f9e445f11" +git-tree-sha1 = "89f86d9376acd18a1a4fbef66a56335a3a7633b8" uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" -version = "3.4.0" +version = "3.5.0" [[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] +deps = ["LinearAlgebra"] +git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.10.0" +version = "1.11.1" +weakdeps = ["SparseArrays"] + + [deps.Statistics.extensions] + SparseArraysExt = ["SparseArrays"] [[deps.StatsAPI]] deps = ["LinearAlgebra"] -git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" +git-tree-sha1 = 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uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.3.2" +version = "1.5.2" weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] @@ -2745,9 +2880,9 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] [[deps.StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "f35f6ab602df8413a50c4a25ca14de821e8605fb" +git-tree-sha1 = "5316097111523c9a970596a5b33cfea5f92e8581" uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.5.7" +version = "0.5.9" [[deps.StringEncodings]] deps = ["Libiconv_jll"] @@ -2757,15 +2892,15 @@ version = "0.3.7" [[deps.StringManipulation]] deps = ["PrecompileTools"] -git-tree-sha1 = "a6b1675a536c5ad1a60e5a5153e1fee12eb146e3" +git-tree-sha1 = "d05693d339e37d6ab134c5ab53c29fce5ee5d7d5" uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.4.0" +version = "0.4.4" [[deps.StructArrays]] deps = ["ConstructionBase", "DataAPI", "Tables"] -git-tree-sha1 = "9537ef82c42cdd8c5d443cbc359110cbb36bae10" +git-tree-sha1 = "ad8002667372439f2e3611cfd14097e03fa4bccd" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.21" +version = "0.7.3" weakdeps = ["Adapt", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "SparseArrays", "StaticArrays"] [deps.StructArrays.extensions] @@ -2775,6 +2910,10 @@ weakdeps = ["Adapt", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Sp StructArraysSparseArraysExt = "SparseArrays" StructArraysStaticArraysExt = "StaticArrays" +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" + [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" @@ -2782,25 +2921,29 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = 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"IfElse", "LinearAlgebra", "MultivariatePolynomials", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "TermInterface", "TimerOutputs", "Unityper", "WeakValueDicts"] -git-tree-sha1 = "f631a4de315d3486ec768f9e9a6a3a85660427e8" +deps = ["AbstractTrees", "ArrayInterface", "Bijections", "ChainRulesCore", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "ExproniconLite", "LinearAlgebra", "MultivariatePolynomials", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "TaskLocalValues", "TermInterface", "TimerOutputs", "Unityper"] +git-tree-sha1 = "a85b4262a55dbd1af39bb6facf621d79ca6a322d" uuid = "d1185830-fcd6-423d-90d6-eec64667417b" -version = "3.11.0" +version = "3.32.0" [deps.SymbolicUtils.extensions] SymbolicUtilsLabelledArraysExt = "LabelledArrays" @@ -2811,26 +2954,30 @@ version = "3.11.0" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" [[deps.Symbolics]] -deps = ["ADTypes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "IfElse", "LaTeXStrings", "Latexify", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "NaNMath", "PrecompileTools", "Primes", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] -git-tree-sha1 = "ad6615b11e39fb0619b0b3d766ab4d24a432d722" +deps = ["ADTypes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "LaTeXStrings", "Latexify", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "NaNMath", "OffsetArrays", "PrecompileTools", "Primes", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "SciMLPublic", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] +git-tree-sha1 = "7e53ce26142025d12565217082830f2f8caa5275" uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7" -version = "6.23.0" +version = "6.58.0" [deps.Symbolics.extensions] + SymbolicsD3TreesExt = "D3Trees" SymbolicsForwardDiffExt = "ForwardDiff" SymbolicsGroebnerExt = "Groebner" SymbolicsLuxExt = "Lux" SymbolicsNemoExt = "Nemo" SymbolicsPreallocationToolsExt = ["PreallocationTools", "ForwardDiff"] SymbolicsSymPyExt = "SymPy" + SymbolicsSymPyPythonCallExt = "SymPyPythonCall" [deps.Symbolics.weakdeps] + D3Trees = "e3df1716-f71e-5df9-9e2d-98e193103c45" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Groebner = "0b43b601-686d-58a3-8a1c-6623616c7cd4" Lux = "b2108857-7c20-44ae-9111-449ecde12c47" Nemo = "2edaba10-b0f1-5616-af89-8c11ac63239a" PreallocationTools = "d236fae5-4411-538c-8e31-a6e3d9e00b46" SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" + SymPyPythonCall = "bc8888f7-b21e-4b7c-a06a-5d9c9496438c" [[deps.TOML]] deps = ["Dates"] @@ -2845,15 +2992,20 @@ version = "1.0.1" [[deps.Tables]] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "OrderedCollections", "TableTraits"] -git-tree-sha1 = "598cd7c1f68d1e205689b1c2fe65a9f85846f297" +git-tree-sha1 = "f2c1efbc8f3a609aadf318094f8fc5204bdaf344" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.12.0" +version = "1.12.1" [[deps.Tar]] deps = ["ArgTools", "SHA"] uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" version = "1.10.0" +[[deps.TaskLocalValues]] +git-tree-sha1 = "67e469338d9ce74fc578f7db1736a74d93a49eb8" +uuid = "ed4db957-447d-4319-bfb6-7fa9ae7ecf34" +version = "0.1.3" + [[deps.TensorCore]] deps = ["LinearAlgebra"] git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" @@ -2874,6 +3026,7 @@ version = "0.1.7" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" +version = "1.11.0" [[deps.TestItems]] git-tree-sha1 = "42fd9023fef18b9b78c8343a4e2f3813ffbcefcb" @@ -2882,58 +3035,31 @@ version = "1.0.0" [[deps.ThreadingUtilities]] deps = ["ManualMemory"] -git-tree-sha1 = "eda08f7e9818eb53661b3deb74e3159460dfbc27" +git-tree-sha1 = "d969183d3d244b6c33796b5ed01ab97328f2db85" uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" -version = "0.5.2" +version = "0.5.5" [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] -git-tree-sha1 = "d7298ebdfa1654583468a487e8e83fae9d72dac3" +git-tree-sha1 = "3748bd928e68c7c346b52125cf41fff0de6937d0" uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" -version = "0.5.26" - -[[deps.Tokenize]] -git-tree-sha1 = "468b4685af4abe0e9fd4d7bf495a6554a6276e75" -uuid = "0796e94c-ce3b-5d07-9a54-7f471281c624" version = "0.5.29" + [deps.TimerOutputs.extensions] + FlameGraphsExt = "FlameGraphs" + + [deps.TimerOutputs.weakdeps] + FlameGraphs = "08572546-2f56-4bcf-ba4e-bab62c3a3f89" + [[deps.TranscodingStreams]] git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" version = "0.11.3" -[[deps.Transducers]] -deps = ["Accessors", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "SplittablesBase", "Tables"] -git-tree-sha1 = "7deeab4ff96b85c5f72c824cae53a1398da3d1cb" -uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.84" - - [deps.Transducers.extensions] - TransducersAdaptExt = "Adapt" - TransducersBlockArraysExt = "BlockArrays" - TransducersDataFramesExt = "DataFrames" - TransducersLazyArraysExt = "LazyArrays" - TransducersOnlineStatsBaseExt = "OnlineStatsBase" - TransducersReferenceablesExt = "Referenceables" - - [deps.Transducers.weakdeps] - Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" - BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" - OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" - Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" - -[[deps.TriangularSolve]] -deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"] -git-tree-sha1 = "be986ad9dac14888ba338c2554dcfec6939e1393" -uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf" -version = "0.2.1" - [[deps.Tricks]] -git-tree-sha1 = "6cae795a5a9313bbb4f60683f7263318fc7d1505" +git-tree-sha1 = "311349fd1c93a31f783f977a71e8b062a57d4101" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.10" +version = "0.1.13" [[deps.TruncatedStacktraces]] deps = ["InteractiveUtils", "MacroTools", "Preferences"] @@ -2942,13 +3068,14 @@ uuid = "781d530d-4396-4725-bb49-402e4bee1e77" version = "1.4.0" [[deps.URIs]] -git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" +git-tree-sha1 = "bef26fb046d031353ef97a82e3fdb6afe7f21b1a" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.5.1" +version = "1.6.1" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +version = "1.11.0" [[deps.UnPack]] git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" @@ -2957,6 +3084,7 @@ version = "1.0.2" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +version = "1.11.0" [[deps.UnicodeFun]] deps = ["REPL"] @@ -2966,20 +3094,18 @@ version = "0.4.1" [[deps.Unitful]] deps = ["Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "c0667a8e676c53d390a09dc6870b3d8d6650e2bf" +git-tree-sha1 = "57e1b2c9de4bd6f40ecb9de4ac1797b81970d008" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.22.0" -weakdeps = ["ConstructionBase", "InverseFunctions"] +version = "1.28.0" +weakdeps = ["ConstructionBase", "ForwardDiff", "InverseFunctions", "LaTeXStrings", "Latexify", "NaNMath", "Printf"] [deps.Unitful.extensions] ConstructionBaseUnitfulExt = "ConstructionBase" + ForwardDiffExt = "ForwardDiff" InverseFunctionsUnitfulExt = "InverseFunctions" - -[[deps.UnitfulLatexify]] -deps = ["LaTeXStrings", "Latexify", "Unitful"] -git-tree-sha1 = "975c354fcd5f7e1ddcc1f1a23e6e091d99e99bc8" -uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" -version = "1.6.4" + LatexifyExt = ["Latexify", "LaTeXStrings"] + NaNMathExt = "NaNMath" + PrintfExt = "Printf" [[deps.Unityper]] deps = ["ConstructionBase"] @@ -2988,14 +3114,16 @@ uuid = "a7c27f48-0311-42f6-a7f8-2c11e75eb415" version = "0.1.6" [[deps.UnsafeAtomics]] -git-tree-sha1 = "b13c4edda90890e5b04ba24e20a310fbe6f249ff" +git-tree-sha1 = "0f30765c32d66d58e41f4cb5624d4fc8a82ec13b" uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.3.0" -weakdeps = ["LLVM"] +version = "0.3.1" [deps.UnsafeAtomics.extensions] UnsafeAtomicsLLVM = ["LLVM"] + [deps.UnsafeAtomics.weakdeps] + LLVM = "929cbde3-209d-540e-8aea-75f648917ca0" + [[deps.Unzip]] git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" @@ -3003,9 +3131,9 @@ version = "0.2.0" [[deps.VectorizationBase]] deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "4ab62a49f1d8d9548a1c8d1a75e5f55cf196f64e" +git-tree-sha1 = "d1d9a935a26c475ebffd54e9c7ad11627c43ea85" uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" -version = "0.21.71" +version = "0.21.72" [[deps.VersionParsing]] git-tree-sha1 = "58d6e80b4ee071f5efd07fda82cb9fbe17200868" @@ -3019,21 +3147,10 @@ uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" version = "1.3.243+0" [[deps.Wayland_jll]] -deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "85c7811eddec9e7f22615371c3cc81a504c508ee" +deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll"] +git-tree-sha1 = "96478df35bbc2f3e1e791bc7a3d0eeee559e60e9" uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.21.0+2" - -[[deps.Wayland_protocols_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "5db3e9d307d32baba7067b13fc7b5aa6edd4a19a" -uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.36.0+0" - -[[deps.WeakValueDicts]] -git-tree-sha1 = "98528c2610a5479f091d470967a25becfd83edd0" -uuid = "897b6980-f191-5a31-bcb0-bf3c4585e0c1" -version = "0.1.0" +version = "1.24.0+0" [[deps.Weave]] deps = ["Base64", "Dates", "Highlights", "JSON", "Markdown", "Mustache", "Pkg", "Printf", "REPL", "RelocatableFolders", "Requires", "Serialization", "YAML"] @@ -3042,214 +3159,198 @@ uuid = "44d3d7a6-8a23-5bf8-98c5-b353f8df5ec9" version = "0.10.12" [[deps.WeightInitializers]] -deps = ["ArgCheck", "ConcreteStructs", "GPUArraysCore", "LinearAlgebra", "Random", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "47b97ba36fcbbf9cc6707ed6ab60cf24fe50b981" +deps = ["ConcreteStructs", "GPUArraysCore", "LinearAlgebra", "Random", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "2af44c69f5c37b7b1d14e262347a24ba349052d6" uuid = "d49dbf32-c5c2-4618-8acc-27bb2598ef2d" -version = "1.1.1" +version = "1.3.3" [deps.WeightInitializers.extensions] - WeightInitializersAMDGPUExt = ["AMDGPU", "GPUArrays"] - WeightInitializersCUDAExt = ["CUDA", "GPUArrays"] - WeightInitializersChainRulesCoreExt = "ChainRulesCore" - WeightInitializersGPUArraysExt = "GPUArrays" - WeightInitializersMetalExt = ["Metal", "GPUArrays"] - WeightInitializersReactantExt = "Reactant" - WeightInitializersoneAPIExt = ["oneAPI", "GPUArrays"] + AMDGPUExt = "AMDGPU" + CUDAExt = "CUDA" + ChainRulesCoreExt = "ChainRulesCore" + GPUArraysExt = "GPUArrays" + ReactantExt = "Reactant" [deps.WeightInitializers.weakdeps] AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" - Metal = "dde4c033-4e86-420c-a63e-0dd931031962" Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" - oneAPI = "8f75cd03-7ff8-4ecb-9b8f-daf728133b1b" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" +git-tree-sha1 = "248a7031b3da79a127f14e5dc5f417e26f9f6db7" uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" -version = "1.0.0" - -[[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "a2fccc6559132927d4c5dc183e3e01048c6dcbd6" -uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.13.5+0" - -[[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "7d1671acbe47ac88e981868a078bd6b4e27c5191" -uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.42+0" +version = "1.1.0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "beef98d5aad604d9e7d60b2ece5181f7888e2fd6" +git-tree-sha1 = "b29c22e245d092b8b4e8d3c09ad7baa586d9f573" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.6.4+0" +version = "5.8.3+0" [[deps.Xorg_libICE_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "326b4fea307b0b39892b3e85fa451692eda8d46c" +git-tree-sha1 = "a3ea76ee3f4facd7a64684f9af25310825ee3668" uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" -version = "1.1.1+0" +version = "1.1.2+0" [[deps.Xorg_libSM_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libICE_jll"] -git-tree-sha1 = "3796722887072218eabafb494a13c963209754ce" +git-tree-sha1 = "9c7ad99c629a44f81e7799eb05ec2746abb5d588" uuid = "c834827a-8449-5923-a945-d239c165b7dd" -version = "1.2.4+0" +version = "1.2.6+0" [[deps.Xorg_libX11_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "9dafcee1d24c4f024e7edc92603cedba72118283" +git-tree-sha1 = 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"JLLWrappers", "Libdl", "Xorg_libXext_jll"] -git-tree-sha1 = "a1a7eaf6c3b5b05cb903e35e8372049b107ac729" +git-tree-sha1 = "0ba01bc7396896a4ace8aab67db31403c71628f4" uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.5+0" +version = "1.1.7+0" [[deps.Xorg_libXrandr_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "b6f664b7b2f6a39689d822a6300b14df4668f0f4" +git-tree-sha1 = "6c174ef70c96c76f4c3f4d3cfbe09d018bcd1b53" uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.4+0" +version = "1.5.6+0" [[deps.Xorg_libXrender_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "a490c6212a0e90d2d55111ac956f7c4fa9c277a6" +git-tree-sha1 = "7ed9347888fac59a618302ee38216dd0379c480d" uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.11+1" +version = "0.9.12+0" -[[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "c57201109a9e4c0585b208bb408bc41d205ac4e9" -uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.2+0" +[[deps.Xorg_libpciaccess_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "58972370b81423fc546c56a60ed1a009450177c3" +uuid = "a65dc6b1-eb27-53a1-bb3e-dea574b5389e" +version = "0.19.0+0" [[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "1a74296303b6524a0472a8cb12d3d87a78eb3612" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXau_jll", "Xorg_libXdmcp_jll"] +git-tree-sha1 = "bfcaf7ec088eaba362093393fe11aa141fa15422" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.17.0+3" +version = "1.17.1+0" [[deps.Xorg_libxkbfile_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] -git-tree-sha1 = "dbc53e4cf7701c6c7047c51e17d6e64df55dca94" +git-tree-sha1 = "ed756a03e95fff88d8f738ebc2849431bdd4fd1a" uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.2+1" +version = "1.2.0+0" [[deps.Xorg_xcb_util_cursor_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] -git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" +git-tree-sha1 = "9750dc53819eba4e9a20be42349a6d3b86c7cdf8" uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" -version = "0.1.4+0" +version = "0.1.6+0" [[deps.Xorg_xcb_util_image_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "f4fc02e384b74418679983a97385644b67e1263b" uuid = "12413925-8142-5f55-bb0e-6d7ca50bb09b" -version = "0.4.0+1" +version = "0.4.1+0" [[deps.Xorg_xcb_util_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll"] -git-tree-sha1 = "e7fd7b2881fa2eaa72717420894d3938177862d1" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll"] +git-tree-sha1 = "68da27247e7d8d8dafd1fcf0c3654ad6506f5f97" uuid = "2def613f-5ad1-5310-b15b-b15d46f528f5" -version = "0.4.0+1" +version = "0.4.1+0" [[deps.Xorg_xcb_util_keysyms_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "d1151e2c45a544f32441a567d1690e701ec89b00" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "44ec54b0e2acd408b0fb361e1e9244c60c9c3dd4" uuid = "975044d2-76e6-5fbe-bf08-97ce7c6574c7" -version = "0.4.0+1" +version = "0.4.1+0" [[deps.Xorg_xcb_util_renderutil_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "dfd7a8f38d4613b6a575253b3174dd991ca6183e" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "5b0263b6d080716a02544c55fdff2c8d7f9a16a0" uuid = "0d47668e-0667-5a69-a72c-f761630bfb7e" -version = "0.3.9+1" +version = "0.3.10+0" [[deps.Xorg_xcb_util_wm_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] -git-tree-sha1 = "e78d10aab01a4a154142c5006ed44fd9e8e31b67" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_jll"] +git-tree-sha1 = "f233c83cad1fa0e70b7771e0e21b061a116f2763" uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" -version = "0.4.1+1" +version = "0.4.2+0" [[deps.Xorg_xkbcomp_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "ab2221d309eda71020cdda67a973aa582aa85d69" +git-tree-sha1 = "801a858fc9fb90c11ffddee1801bb06a738bda9b" uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.6+1" +version = "1.4.7+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" +git-tree-sha1 = "429722587208f02b1cecbddcd20133df2f1ed796" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.39.0+0" +version = "2.47.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6dba04dbfb72ae3ebe5418ba33d087ba8aa8cb00" +git-tree-sha1 = "a63799ff68005991f9d9491b6e95bd3478d783cb" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.5.1+0" +version = "1.6.0+0" [[deps.YAML]] deps = ["Base64", "Dates", "Printf", "StringEncodings"] -git-tree-sha1 = "dea63ff72079443240fbd013ba006bcbc8a9ac00" +git-tree-sha1 = "a1c0c7585346251353cddede21f180b96388c403" uuid = "ddb6d928-2868-570f-bddf-ab3f9cf99eb6" -version = "0.4.12" +version = "0.4.16" [[deps.ZMQ]] -deps = ["FileWatching", "PrecompileTools", "Sockets", "ZeroMQ_jll"] -git-tree-sha1 = "33333bdded3835f81b9b6353da9243dc4ec62e0f" +deps = ["FileWatching", "PrecompileTools", "Printf", "Sockets", "ZeroMQ_jll"] +git-tree-sha1 = "5f1c7008e2258c61af0eafef8c1f536b9fffbbd2" uuid = "c2297ded-f4af-51ae-bb23-16f91089e4e1" -version = "1.4.0" +version = "1.5.1" [[deps.ZeroMQ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "libsodium_jll"] -git-tree-sha1 = "f02ce8f0fda1ed40f4d0d59a2ad05e35e8ac9b0e" +git-tree-sha1 = "766d90db2817565b667c1cc9cc420d668f2e8dba" uuid = "8f1865be-045e-5c20-9c9f-bfbfb0764568" -version = "4.3.5+3" +version = "4.3.6+0" [[deps.Zlib_jll]] deps = ["Libdl"] @@ -3258,61 +3359,57 @@ version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "622cf78670d067c738667aaa96c553430b65e269" +git-tree-sha1 = "446b23e73536f84e8037f5dce465e92275f6a308" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.7+0" +version = "1.5.7+1" [[deps.Zygote]] -deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] -git-tree-sha1 = "0b3c944f5d2d8b466c5d20a84c229c17c528f49e" +deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] +git-tree-sha1 = "a29cbf3968d36022198bcc6f23fdfd70f7caf737" uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" -version = "0.6.75" +version = "0.7.10" [deps.Zygote.extensions] + ZygoteAtomExt = "Atom" ZygoteColorsExt = "Colors" ZygoteDistancesExt = "Distances" ZygoteTrackerExt = "Tracker" [deps.Zygote.weakdeps] + Atom = "c52e3926-4ff0-5f6e-af25-54175e0327b1" Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" Distances = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" +git-tree-sha1 = "434b3de333c75fc446aa0d19fc394edafd07ab08" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.5" +version = "0.2.7" [[deps.eudev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] -git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c3b0e6196d50eab0c5ed34021aaa0bb463489510" uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" -version = "3.2.9+0" +version = "3.2.14+0" [[deps.fzf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6e50f145003024df4f5cb96c7fce79466741d601" +git-tree-sha1 = "b6a34e0e0960190ac2a4363a1bd003504772d631" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" -version = "0.56.3+0" - -[[deps.gperf_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0ba42241cb6809f1a278d0bcb976e0483c3f1f2d" -uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" -version = "3.1.1+1" +version = "0.61.1+0" [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "522c1df09d05a71785765d19c9524661234738e9" +git-tree-sha1 = "850b06095ee71f0135d644ffd8a52850699581ed" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.11.0+0" +version = "3.13.3+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "e17c115d55c5fbb7e52ebedb427a0dca79d4484e" +git-tree-sha1 = "125eedcb0a4a0bba65b657251ce1d27c8714e9d6" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.2+0" +version = "0.17.4+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] @@ -3325,58 +3422,70 @@ git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" version = "0.2.2+0" +[[deps.libdrm_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libpciaccess_jll"] +git-tree-sha1 = "63aac0bcb0b582e11bad965cef4a689905456c03" +uuid = "8e53e030-5e6c-5a89-a30b-be5b7263a166" +version = "2.4.125+1" + [[deps.libevdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "56d643b57b188d30cccc25e331d416d3d358e557" uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" -version = "1.11.0+0" +version = "1.13.4+0" [[deps.libfdk_aac_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "8a22cf860a7d27e4f3498a0fe0811a7957badb38" +git-tree-sha1 = "646634dd19587a56ee2f1199563ec056c5f228df" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.3+0" +version = "2.0.4+0" [[deps.libinput_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] -git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +deps = ["Artifacts", "JLLWrappers", "Libdl", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "91d05d7f4a9f67205bd6cf395e488009fe85b499" uuid = "36db933b-70db-51c0-b978-0f229ee0e533" -version = "1.18.0+0" +version = "1.28.1+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d7b5bbf1efbafb5eca466700949625e07533aff2" +git-tree-sha1 = "e51150d5ab85cee6fc36726850f0e627ad2e4aba" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.45+1" +version = "1.6.58+0" [[deps.libsodium_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f76d682d87eefadd3f165d8d9fda436464213142" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "011b0a7331b41c25524b64dc42afc9683ee89026" uuid = "a9144af2-ca23-56d9-984f-0d03f7b5ccf8" -version = "1.0.20+3" +version = "1.0.21+0" + +[[deps.libva_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll", "Xorg_libXext_jll", "Xorg_libXfixes_jll", "libdrm_jll"] +git-tree-sha1 = "7dbf96baae3310fe2fa0df0ccbb3c6288d5816c9" +uuid = "9a156e7d-b971-5f62-b2c9-67348b8fb97c" +version = "2.23.0+0" [[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "490376214c4721cdaca654041f635213c6165cb3" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] +git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+2" +version = "1.3.8+0" [[deps.mtdev_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b4d631fd51f2e9cdd93724ae25b2efc198b059b1" uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" -version = "1.1.6+0" +version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.52.0+1" +version = "1.59.0+0" [[deps.oneTBB_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "1350188a69a6e46f799d3945beef36435ed7262f" uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" -version = "2021.12.0+0" +version = "2022.0.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] @@ -3384,19 +3493,19 @@ uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" version = "17.4.0+2" [[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" +version = "10164.0.1+0" [[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e7b67590c14d487e734dcb925924c5dc43ec85f3" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" +version = "4.1.0+0" [[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "63406453ed9b33a0df95d570816d5366c92b7809" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "a1fc6507a40bf504527d0d4067d718f8e179b2b8" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+2" +version = "1.13.0+0" diff --git a/benchmarks/ParameterEstimation/Project.toml b/benchmarks/ParameterEstimation/Project.toml index 4c9034b4c..2ee7a6be6 100644 --- a/benchmarks/ParameterEstimation/Project.toml +++ b/benchmarks/ParameterEstimation/Project.toml @@ -21,13 +21,13 @@ BlackBoxOptim = "0.6" DiffEqParamEstim = "2" Distributions = "0.25" ForwardDiff = "0.10, 1" -ModelingToolkit = "9" +ModelingToolkit = "11" NLopt = "1" Optimization = "4, 5" OptimizationBBO = "0.4" OptimizationNLopt = "0.3" -OrdinaryDiffEq = "6" +OrdinaryDiffEq = "7" ParameterizedFunctions = "5.3" Plots = "1.4" -RecursiveArrayTools = "3" +RecursiveArrayTools = "4" SciMLBenchmarks = "0.1" diff --git a/benchmarks/SimpleHandwrittenPDE/Manifest.toml b/benchmarks/SimpleHandwrittenPDE/Manifest.toml index befccd8e1..6ee5eae9a 100644 --- a/benchmarks/SimpleHandwrittenPDE/Manifest.toml +++ b/benchmarks/SimpleHandwrittenPDE/Manifest.toml @@ -1,36 +1,43 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.12.4" +julia_version = "1.11.9" manifest_format = "2.0" -project_hash = "2f6875ad4a05efc48de45f5a6e6ab75fa4f1a19f" +project_hash = "d7e7e5b6b62e85c051478480d4c06c388fa0c3f4" [[deps.ADTypes]] -git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" +git-tree-sha1 = "bbc22a9a08a0ef6460041086d8a7b27940ed4ffd" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.21.0" -weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] +version = "1.22.0" [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" ADTypesConstructionBaseExt = "ConstructionBase" ADTypesEnzymeCoreExt = "EnzymeCore" + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] [deps.AbstractFFTs.extensions] AbstractFFTsChainRulesCoreExt = "ChainRulesCore" AbstractFFTsTestExt = "Test" + [deps.AbstractFFTs.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + [[deps.Accessors]] deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] -git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +git-tree-sha1 = "2eeb2c9bef11013efc6f8f97f32ee59b146b09fb" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.43" +version = "0.1.44" [deps.Accessors.extensions] AxisKeysExt = "AxisKeys" @@ -52,9 +59,9 @@ version = "0.1.43" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "35ea197a51ce46fcd01c4a44befce0578a1aaeca" +git-tree-sha1 = "0761717147821d696c9470a7a86364b2fbd22fd8" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.5.0" +version = "4.5.2" weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] @@ -84,9 +91,9 @@ version = "1.1.2" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "78b3a7a536b4b0a747a0f296ea77091ca0a9f9a3" +git-tree-sha1 = "54f895554d05c83e3dd59f6a396671dae8999573" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.23.0" +version = "7.24.0" [deps.ArrayInterface.extensions] ArrayInterfaceAMDGPUExt = "AMDGPU" @@ -194,15 +201,18 @@ weakdeps = ["SparseArrays"] [[deps.BracketingNonlinearSolve]] deps = ["CommonSolve", "ConcreteStructs", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "4999dff8efd76814f6662519b985aeda975a1924" +git-tree-sha1 = "7ad7171d693ae5552ac43862e7f6b61df4471c2b" uuid = "70df07ce-3d50-431d-a3e7-ca6ddb60ac1e" -version = "1.11.0" -weakdeps = ["ChainRulesCore", "ForwardDiff"] +version = "1.12.1" [deps.BracketingNonlinearSolve.extensions] BracketingNonlinearSolveChainRulesCoreExt = ["ChainRulesCore", "ForwardDiff"] BracketingNonlinearSolveForwardDiffExt = "ForwardDiff" + [deps.BracketingNonlinearSolve.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" @@ -221,26 +231,16 @@ uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" version = "0.2.7" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d0efe2c6fdcdaa1c161d206aa8b933788397ec71" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.5+1" - -[[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" -uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.26.0" -weakdeps = ["SparseArrays"] - - [deps.ChainRulesCore.extensions] - ChainRulesCoreSparseArraysExt = "SparseArrays" +version = "1.18.6+0" [[deps.ClassicalOrthogonalPolynomials]] deps = ["ArrayLayouts", "BandedMatrices", "BlockArrays", "BlockBandedMatrices", "ContinuumArrays", "DomainSets", "FFTW", "FastGaussQuadrature", "FastTransforms", "FillArrays", "HypergeometricFunctions", "InfiniteArrays", "InfiniteLinearAlgebra", "IntervalSets", "LazyArrays", "LazyBandedMatrices", "LinearAlgebra", "QuasiArrays", "RecurrenceRelationshipArrays", "RecurrenceRelationships", "SpecialFunctions"] -git-tree-sha1 = "7387613ba3f8b402a33495e182cb9b739d8aa49a" +git-tree-sha1 = "9051ae50171b1415e74833809990b7a6650286f2" uuid = "b30e2e7b-c4ee-47da-9d5f-2c5c27239acd" -version = "0.15.16" +version = "0.15.17" [deps.ClassicalOrthogonalPolynomials.extensions] ClassicalOrthogonalPolynomialsMutableArithmeticsExt = "MutableArithmetics" @@ -321,7 +321,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.3.0+1" +version = "1.1.1+0" [[deps.CompositeTypes]] git-tree-sha1 = "bce26c3dab336582805503bed209faab1c279768" @@ -367,9 +367,9 @@ weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [[deps.ContinuumArrays]] deps = ["AbstractFFTs", "ArrayLayouts", "BandedMatrices", "BlockArrays", "DomainSets", "FillArrays", "InfiniteArrays", "Infinities", "IntervalSets", "LazyArrays", "LinearAlgebra", "QuasiArrays", "StaticArrays"] -git-tree-sha1 = "56c6c3ca955d6233de12d6c0ddb22bbd8a5274c1" +git-tree-sha1 = "bfcafb3f0028fe788b8331a7f0a960a819793314" uuid = "7ae1f121-cc2c-504b-ac30-9b923412ae5c" -version = "0.20.4" +version = "0.20.5" [deps.ContinuumArrays.extensions] ContinuumArraysMakieExt = "Makie" @@ -407,9 +407,9 @@ version = "1.16.0" [[deps.DataStructures]] deps = ["OrderedCollections"] -git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" +git-tree-sha1 = "e86f4a2805f7f19bec5129bc9150c38208e5dc23" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.19.3" +version = "0.19.4" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -434,14 +434,15 @@ uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" version = "1.9.1" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "1719cd1b0a12e01775dc6db1577dd6ace1798fee" +deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "2d7ca58e6ce2d1f7a435773d73d111741e283070" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.210.1" +version = "7.1.0" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" DiffEqBaseChainRulesCoreExt = "ChainRulesCore" + DiffEqBaseDynamicQuantitiesExt = "DynamicQuantities" DiffEqBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] DiffEqBaseFlexUnitsExt = "FlexUnits" DiffEqBaseForwardDiffExt = ["ForwardDiff"] @@ -460,6 +461,7 @@ version = "6.210.1" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" + DynamicQuantities = "06fc5a27-2a28-4c7c-a15d-362465fb6821" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FlexUnits = "76e01b6b-c995-4ce6-8559-91e72a3d4e95" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" @@ -476,15 +478,15 @@ version = "6.210.1" [[deps.DiffEqDevTools]] deps = ["DiffEqBase", "DiffEqNoiseProcess", "Distributed", "LinearAlgebra", "Logging", "NLsolve", "RecipesBase", "RecursiveArrayTools", "RootedTrees", "SciMLBase", "Statistics", "StructArrays"] -git-tree-sha1 = "5ff2f5b04b9504e1bc6aa22d0787091738613148" +git-tree-sha1 = "cc290a2fdad4d332ba6a88953eaf5800687ccd49" uuid = "f3b72e0c-5b89-59e1-b016-84e28bfd966d" -version = "2.49.0" +version = "3.0.0" [[deps.DiffEqNoiseProcess]] deps = ["CommonSolve", "DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "PoissonRandom", "QuadGK", "Random", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "b879ca516034469f28becdf01f85f56b45f518b9" +git-tree-sha1 = "5b5fe6eb9e994ff0de4e84fe149b03c706fd6403" uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" -version = "5.27.0" +version = "5.31.0" [deps.DiffEqNoiseProcess.extensions] DiffEqNoiseProcessOptimExt = "Optim" @@ -508,9 +510,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +git-tree-sha1 = "d0250552e42bf7cc36479fd38a6e30004c9e8c2b" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.7.16" +version = "0.7.17" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -520,7 +522,7 @@ version = "0.7.16" DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] - DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGPUArraysCoreExt = ["GPUArraysCore", "Adapt"] DifferentiationInterfaceGTPSAExt = "GTPSA" DifferentiationInterfaceMooncakeExt = "Mooncake" DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] @@ -534,6 +536,7 @@ version = "0.7.16" DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] [deps.DifferentiationInterface.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" @@ -561,12 +564,15 @@ deps = ["LinearAlgebra", "Statistics", "StatsAPI"] git-tree-sha1 = "c7e3a542b999843086e2f29dac96a618c105be1d" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" version = "0.10.12" -weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] DistancesChainRulesCoreExt = "ChainRulesCore" DistancesSparseArraysExt = "SparseArrays" + [deps.Distances.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" @@ -574,9 +580,9 @@ version = "1.11.0" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" +git-tree-sha1 = "e421c1938fafab0165b04dc1a9dbe2a26272952c" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.123" +version = "0.25.125" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -594,10 +600,10 @@ uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" version = "0.9.5" [[deps.DomainSets]] -deps = ["CompositeTypes", "IntervalSets", "LinearAlgebra", "StaticArrays"] -git-tree-sha1 = "c249d86e97a7e8398ce2068dce4c078a1c3464de" +deps = ["CompositeTypes", "FunctionMaps", "IntervalSets", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "1af39efbaf76fb648432b5efaac0d73af6760407" uuid = "5b8099bc-c8ec-5219-889f-1d9e522a28bf" -version = "0.7.16" +version = "0.8.0" [deps.DomainSets.extensions] DomainSetsMakieExt = "Makie" @@ -610,7 +616,7 @@ version = "0.7.16" [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.7.0" +version = "1.6.0" [[deps.EnumX]] git-tree-sha1 = "c49898e8438c828577f04b92fc9368c388ac783c" @@ -618,15 +624,18 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.7" [[deps.EnzymeCore]] -git-tree-sha1 = "990991b8aa76d17693a98e3a915ac7aa49f08d1a" +git-tree-sha1 = "c6ee69ee502060982d12dbaaf3d8fcb4e835a0d1" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.8.18" -weakdeps = ["Adapt", "ChainRulesCore"] +version = "0.8.20" [deps.EnzymeCore.extensions] AdaptExt = "Adapt" EnzymeCoreChainRulesCoreExt = "ChainRulesCore" + [deps.EnzymeCore.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + [[deps.EpollShim_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "8a4be429317c42cfae6a7fc03c31bad1970c310d" @@ -641,9 +650,9 @@ version = "0.1.11" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "27af30de8b5445644e8ffe3bcb0d72049c089cf1" +git-tree-sha1 = "8f05e9a2e7c2e3eb524102bb2926c5743c07fbe1" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.7.3+0" +version = "2.8.0+0" [[deps.ExponentialUtilities]] deps = ["Adapt", "ArrayInterface", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "PrecompileTools", "Printf", "SparseArrays", "libblastrampoline_jll"] @@ -660,11 +669,6 @@ git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" version = "0.1.10" -[[deps.ExproniconLite]] -git-tree-sha1 = "c13f0b150373771b0fdc1713c97860f8df12e6c2" -uuid = "55351af7-c7e9-48d6-89ff-24e801d99491" -version = "0.10.14" - [[deps.FFMPEG]] deps = ["FFMPEG_jll"] git-tree-sha1 = "95ecf07c2eea562b5adbd0696af6db62c0f52560" @@ -673,9 +677,9 @@ version = "0.4.5" [[deps.FFMPEG_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libva_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "66381d7059b5f3f6162f28831854008040a4e905" +git-tree-sha1 = "cac41ca6b2d399adfc95e51240566f8a60a80806" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "8.0.1+1" +version = "8.1.0+0" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "Libdl", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] @@ -685,15 +689,23 @@ version = "1.10.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6d6219a004b8cf1e0b4dbe27a2860b8e04eba0be" +git-tree-sha1 = "6866aec60ef98e3164cd8d6855225684207e9dff" uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.11+0" +version = "3.3.12+0" [[deps.FastBroadcast]] -deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "ab1b34570bcdf272899062e1a56285a53ecaae08" +deps = ["ArrayInterface", "LinearAlgebra"] +git-tree-sha1 = "7feeed2c9a7fa272189a5561bebf0c4ccaedb6ec" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.3.5" +version = "1.3.2" + + [deps.FastBroadcast.extensions] + FastBroadcastPolyesterExt = "Polyester" + FastBroadcastStaticExt = "Static" + + [deps.FastBroadcast.weakdeps] + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" + Static = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" @@ -737,9 +749,9 @@ version = "0.17.1" [[deps.FastTransforms_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "FFTW_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl", "MPFR_jll", "OpenBLAS_jll"] -git-tree-sha1 = "efb41482692019ed03e0de67b9e48e88c0504e7d" +git-tree-sha1 = "b28d81a08c4b79324d2cf942c398b4fe87280932" uuid = "34b6f7d7-08f9-5794-9e10-3819e4c7e49a" -version = "0.6.3+0" +version = "0.6.4+0" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" @@ -760,9 +772,9 @@ weakdeps = ["PDMats", "SparseArrays", "StaticArrays", "Statistics"] [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "9340ca07ca27093ff68418b7558ca37b05f8aeb1" +git-tree-sha1 = "f7017a4f337f8df189fcce98e32b67a1298a2115" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.29.0" +version = "2.31.0" weakdeps = ["BandedMatrices", "BlockBandedMatrices", "SparseArrays", "StaticArrays"] [deps.FiniteDiff.extensions] @@ -790,9 +802,9 @@ version = "1.3.7" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "eef4c86803f47dcb61e9b8790ecaa96956fdd8ae" +git-tree-sha1 = "cddeab6487248a39dae1a960fff0ac17b2a28888" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "1.3.2" +version = "1.3.3" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -800,9 +812,9 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "2c5512e11c791d1baed2049c5652441b28fc6a31" +git-tree-sha1 = "70329abc09b886fd2c5d94ad2d9527639c421e3e" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.4+0" +version = "2.14.3+1" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -810,16 +822,31 @@ git-tree-sha1 = "7a214fdac5ed5f59a22c2d9a885a16da1c74bbc7" uuid = "559328eb-81f9-559d-9380-de523a88c83c" version = "1.0.17+0" +[[deps.FunctionMaps]] +deps = ["CompositeTypes", "LinearAlgebra", "StaticArrays"] +git-tree-sha1 = "31bd99a57edf98990d1c21486032963955450e8d" +uuid = "a85aefff-f8ca-4649-a888-c8e5398bc76c" +version = "0.1.2" + [[deps.FunctionWrappers]] git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" version = "1.1.3" [[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +deps = ["FunctionWrappers", "PrecompileTools", "TruncatedStacktraces"] +git-tree-sha1 = "c1b0c3a166a2a393257aa888787ca817532e14ce" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" +version = "1.8.0" + + [deps.FunctionWrappersWrappers.extensions] + FunctionWrappersWrappersEnzymeExt = ["Enzyme", "EnzymeCore"] + FunctionWrappersWrappersMooncakeExt = "Mooncake" + + [deps.FunctionWrappersWrappers.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" [[deps.Future]] deps = ["Random"] @@ -828,14 +855,14 @@ version = "1.11.0" [[deps.GLFW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] -git-tree-sha1 = "b7bfd56fa66616138dfe5237da4dc13bbd83c67f" +git-tree-sha1 = "9e0fb9e54594c47f278d75063980e43066e26e20" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.4.1+0" +version = "3.4.1+1" [[deps.GMP_jll]] deps = ["Artifacts", "Libdl"] uuid = "781609d7-10c4-51f6-84f2-b8444358ff6d" -version = "6.3.0+2" +version = "6.3.0+0" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -861,9 +888,9 @@ version = "0.73.24+0" [[deps.GenericFFT]] deps = ["AbstractFFTs", "FFTW", "LinearAlgebra", "Reexport"] -git-tree-sha1 = "1bc01f2ea9a0226a60723794ff86b8017739f5d9" +git-tree-sha1 = "5029b303ba330e2c94ea3237b0e20df44aaab75e" uuid = "a8297547-1b15-4a5a-a998-a2ac5f1cef28" -version = "0.1.6" +version = "0.1.7" [[deps.GenericSchur]] deps = ["LinearAlgebra", "Printf"] @@ -897,9 +924,9 @@ version = "3.7.0+0" [[deps.Git_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "dc34a3e3d96b4ed305b641e626dc14c12b7824b8" +git-tree-sha1 = "0dd4cfb426924210c8f42742751cbde74b27bfa3" uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb" -version = "2.53.0+0" +version = "2.54.0+0" [[deps.Glib_jll]] deps = ["Artifacts", "GettextRuntime_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] @@ -1010,9 +1037,9 @@ uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" version = "1.11.0" [[deps.IntervalSets]] -git-tree-sha1 = "d966f85b3b7a8e49d034d27a189e9a4874b4391a" +git-tree-sha1 = "79d6bd28c8d9bccc2229784f1bd637689b256377" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.13" +version = "0.7.14" weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] @@ -1063,22 +1090,11 @@ git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.4" -[[deps.Jieko]] -deps = ["ExproniconLite"] -git-tree-sha1 = "2f05ed29618da60c06a87e9c033982d4f71d0b6c" -uuid = "ae98c720-c025-4a4a-838c-29b094483192" -version = "0.2.1" - [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "b6893345fd6658c8e475d40155789f4860ac3b21" +git-tree-sha1 = "c0c9b76f3520863909825cbecdef58cd63de705a" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.1.4+0" - -[[deps.JuliaSyntaxHighlighting]] -deps = ["StyledStrings"] -uuid = "ac6e5ff7-fb65-4e79-a425-ec3bc9c03011" -version = "1.12.0" +version = "3.1.5+0" [[deps.Krylov]] deps = ["LinearAlgebra", "Printf", "SparseArrays"] @@ -1094,9 +1110,9 @@ version = "3.100.3+0" [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "aaafe88dccbd957a8d82f7d05be9b69172e0cee3" +git-tree-sha1 = "17b94ecafcfa45e8360a4fc9ca6b583b049e4e37" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "4.0.1+0" +version = "4.1.0+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1106,9 +1122,9 @@ version = "18.1.8+0" [[deps.LSODA]] deps = ["Compat", "DiffEqBase", "LSODA_jll", "LinearAlgebra", "Parameters", "Printf", "SciMLBase"] -git-tree-sha1 = "49c00ced68a8033b30fb1009b8dea7871aa9e928" +git-tree-sha1 = "0a062653ab0a72c7a04f53f4bd6ca83a180937b4" uuid = "7f56f5a3-f504-529b-bc02-0b1fe5e64312" -version = "0.7.5" +version = "0.7.7" [[deps.LSODA_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1116,12 +1132,6 @@ git-tree-sha1 = "3c5277e990a9026f31a35ca6c4acddc8a706a38c" uuid = "aae0fff6-70f8-51e1-979a-8150c7cc74bd" version = "0.1.2+0" -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "1c602b1127f4751facb671441ca72715cc95938a" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.3+0" - [[deps.LaTeXStrings]] git-tree-sha1 = "dda21b8cbd6a6c40d9d02a73230f9d70fed6918c" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" @@ -1153,9 +1163,9 @@ version = "0.1.17" [[deps.LazyArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "41d433e5854d7a67e8ab2b04962a713fcbcffcf1" +git-tree-sha1 = "33b5d8fafb7ab69eca907b359d00d0107feb2cbf" uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "2.9.5" +version = "2.9.7" weakdeps = ["BandedMatrices", "BlockArrays", "BlockBandedMatrices", "StaticArrays"] [deps.LazyArrays.extensions] @@ -1185,24 +1195,24 @@ uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" version = "0.6.4" [[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "OpenSSL_jll", "Zlib_jll", "nghttp2_jll"] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.15.0+0" +version = "8.6.0+0" [[deps.LibGit2]] -deps = ["LibGit2_jll", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" version = "1.11.0" [[deps.LibGit2_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "OpenSSL_jll"] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.9.0+0" +version = "1.7.2+0" [[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "OpenSSL_jll"] +deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.11.3+1" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -1228,9 +1238,9 @@ version = "1.18.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "97bbca976196f2a1eb9607131cb108c69ec3f8a6" +git-tree-sha1 = "cc3ad4faf30015a3e8094c9b5b7f19e85bdf2386" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] @@ -1240,15 +1250,15 @@ version = "4.7.2+0" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d0205286d9eceadc518742860bf23f703779a3d6" +git-tree-sha1 = "d620582b1f0cbe2c72dd1d5bd195a9ce73370ab1" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.LineSearch]] deps = ["ADTypes", "CommonSolve", "ConcreteStructs", "FastClosures", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "SciMLBase", "SciMLJacobianOperators", "StaticArraysCore"] -git-tree-sha1 = "9f7253c0574b4b585c8909232adb890930da980a" +git-tree-sha1 = "fd58a77c92e7c8f1db25c9839127d52943a49349" uuid = "87fe0de2-c867-4266-b59a-2f0a94fc965b" -version = "0.1.6" +version = "0.1.9" weakdeps = ["LineSearches"] [deps.LineSearch.extensions] @@ -1263,34 +1273,41 @@ version = "7.5.1" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" -version = "1.12.0" +version = "1.11.0" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "f9e19cacc616da676db6fbb74827d3979ad6c0ae" +deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] +git-tree-sha1 = "42b5cb44317e89ef75dd841c9c8eba9045bf9ff0" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "3.59.1" +version = "3.75.0" [deps.LinearSolve.extensions] LinearSolveAMDGPUExt = "AMDGPU" + LinearSolveAlgebraicMultigridExt = "AlgebraicMultigrid" LinearSolveBLISExt = ["blis_jll", "LAPACK_jll"] LinearSolveBandedMatricesExt = "BandedMatrices" LinearSolveBlockDiagonalsExt = "BlockDiagonals" LinearSolveCUDAExt = "CUDA" LinearSolveCUDSSExt = "CUDSS" LinearSolveCUSOLVERRFExt = ["CUSOLVERRF", "SparseArrays"] + LinearSolveChainRulesCoreExt = "ChainRulesCore" LinearSolveCliqueTreesExt = ["CliqueTrees", "SparseArrays"] + LinearSolveElementalExt = "Elemental" LinearSolveEnzymeExt = ["EnzymeCore", "SparseArrays"] LinearSolveFastAlmostBandedMatricesExt = "FastAlmostBandedMatrices" LinearSolveFastLapackInterfaceExt = "FastLapackInterface" LinearSolveForwardDiffExt = "ForwardDiff" + LinearSolveGinkgoExt = ["Ginkgo", "SparseArrays"] LinearSolveHYPREExt = "HYPRE" LinearSolveIterativeSolversExt = "IterativeSolvers" LinearSolveKernelAbstractionsExt = "KernelAbstractions" LinearSolveKrylovKitExt = "KrylovKit" LinearSolveMetalExt = "Metal" LinearSolveMooncakeExt = "Mooncake" + LinearSolvePETScCSRExt = ["PETSc", "SparseArrays", "SparseMatricesCSR"] LinearSolvePETScExt = ["PETSc", "SparseArrays"] + LinearSolvePETScMPIExt = ["PETSc", "PartitionedArrays", "SparseArrays", "SparseMatricesCSR"] + LinearSolveParUExt = ["ParU_jll", "SparseArrays"] LinearSolvePardisoExt = ["Pardiso", "SparseArrays"] LinearSolveRecursiveFactorizationExt = "RecursiveFactorization" LinearSolveSparseArraysExt = "SparseArrays" @@ -1298,16 +1315,20 @@ version = "3.59.1" [deps.LinearSolve.weakdeps] AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + AlgebraicMultigrid = "2169fc97-5a83-5252-b627-83903c6c433c" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" CUSOLVERRF = "a8cc9031-bad2-4722-94f5-40deabb4245c" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" + Elemental = "902c3f28-d1ec-5e7e-8399-a24c3845ee38" EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" FastLapackInterface = "29a986be-02c6-4525-aec4-84b980013641" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Ginkgo = "4c8bd3c9-ead9-4b5e-a625-08f1338ba0ec" HYPRE = "b5ffcf37-a2bd-41ab-a3da-4bd9bc8ad771" IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" @@ -1316,9 +1337,12 @@ version = "3.59.1" Metal = "dde4c033-4e86-420c-a63e-0dd931031962" Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" PETSc = "ace2c81b-2b5f-4b1e-a30d-d662738edfe0" + ParU_jll = "9e0b026c-e8ce-559c-a2c4-6a3d5c955bc9" Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" + PartitionedArrays = "5a9dfac6-5c52-46f7-8278-5e2210713be9" RecursiveFactorization = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseMatricesCSR = "a0a7dd2c-ebf4-11e9-1f05-cf50bc540ca1" Sparspak = "e56a9233-b9d6-4f03-8d0f-1825330902ac" blis_jll = "6136c539-28a5-5bf0-87cc-b183200dce32" @@ -1374,7 +1398,7 @@ version = "2025.2.0+0" [[deps.MPFR_jll]] deps = ["Artifacts", "GMP_jll", "Libdl"] uuid = "3a97d323-0669-5f0c-9066-3539efd106a3" -version = "4.2.2+0" +version = "4.2.1+0" [[deps.MacroTools]] git-tree-sha1 = "1e0228a030642014fe5cfe68c2c0a818f9e3f522" @@ -1387,7 +1411,7 @@ uuid = "d125e4d3-2237-4719-b19c-fa641b8a4667" version = "0.1.8" [[deps.Markdown]] -deps = ["Base64", "JuliaSyntaxHighlighting", "StyledStrings"] +deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" version = "1.11.0" @@ -1418,10 +1442,9 @@ uuid = "739be429-bea8-5141-9913-cc70e7f3736d" version = "1.1.10" [[deps.MbedTLS_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "ff69a2b1330bcb730b9ac1ab7dd680176f5896b8" +deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.1010+0" +version = "2.28.6+0" [[deps.Measures]] git-tree-sha1 = "b513cedd20d9c914783d8ad83d08120702bf2c77" @@ -1438,15 +1461,9 @@ version = "1.2.0" uuid = "a63ad114-7e13-5084-954f-fe012c677804" version = "1.11.0" -[[deps.Moshi]] -deps = ["ExproniconLite", "Jieko"] -git-tree-sha1 = "53f817d3e84537d84545e0ad749e483412dd6b2a" -uuid = "2e0e35c7-a2e4-4343-998d-7ef72827ed2d" -version = "0.3.7" - [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2025.11.4" +version = "2023.12.12" [[deps.MuladdMacro]] git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" @@ -1479,13 +1496,13 @@ version = "1.1.3" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.3.0" +version = "1.2.0" [[deps.NonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SciMLLogging", "SimpleNonlinearSolve", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "d27bcf0cebf8786edcc2eaa4455c959e680334e7" +deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SciMLLogging", "Setfield", "SimpleNonlinearSolve", "StaticArraysCore", "SymbolicIndexingInterface"] +git-tree-sha1 = "ae0b0f875e4dfda538ab6977ec7939126ee9a1fe" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "4.16.0" +version = "4.19.0" [deps.NonlinearSolve.extensions] NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" @@ -1515,10 +1532,10 @@ version = "4.16.0" Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" [[deps.NonlinearSolveBase]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "LinearAlgebra", "LogExpFunctions", "Markdown", "MaybeInplace", "PreallocationTools", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "4f595a0977d6e048fa1e3c382b088b950f8c7934" +deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "LogExpFunctions", "Markdown", "MaybeInplace", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] +git-tree-sha1 = "a19a5df29ef2b197499fc631fa1a59385ae15262" uuid = "be0214bd-f91f-a760-ac4e-3421ce2b2da0" -version = "2.15.0" +version = "2.25.0" [deps.NonlinearSolveBase.extensions] NonlinearSolveBaseBandedMatricesExt = "BandedMatrices" @@ -1548,15 +1565,15 @@ version = "2.15.0" [[deps.NonlinearSolveFirstOrder]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConcreteStructs", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLJacobianOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "eea7cbe389b168c77df7ff779fb7277019c685c8" +git-tree-sha1 = "ce68820a4f421fb5bee7ec4dcf875aff33886bfb" uuid = "5959db7a-ea39-4486-b5fe-2dd0bf03d60d" -version = "2.0.0" +version = "2.1.1" [[deps.NonlinearSolveQuasiNewton]] deps = ["ArrayInterface", "CommonSolve", "ConcreteStructs", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLOperators", "StaticArraysCore"] -git-tree-sha1 = "ade27e8e9566b6cec63ee62f6a6650a11cf9a2eb" +git-tree-sha1 = "538432ca1aea8bf63db02929bf870501f8a7c64c" uuid = "9a2c21bd-3a47-402d-9113-8faf9a0ee114" -version = "1.12.0" +version = "1.13.1" weakdeps = ["ForwardDiff"] [deps.NonlinearSolveQuasiNewton.extensions] @@ -1564,9 +1581,9 @@ weakdeps = ["ForwardDiff"] [[deps.NonlinearSolveSpectralMethods]] deps = ["CommonSolve", "ConcreteStructs", "LineSearch", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "eafd027b5cd768f19bb5de76c0e908a9065ddd36" +git-tree-sha1 = "a3781e12becdf0ce5520bd97ec617e879bf4e9f2" uuid = "26075421-4e9a-44e1-8bd1-420ed7ad02b2" -version = "1.6.0" +version = "1.7.1" weakdeps = ["ForwardDiff"] [deps.NonlinearSolveSpectralMethods.extensions] @@ -1589,25 +1606,25 @@ version = "1.3.6+0" [[deps.OpenBLAS32_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "46cce8b42186882811da4ce1f4c7208b02deb716" +git-tree-sha1 = "dd0d9979377e43918a80486a562ddedcc6d9bdf3" uuid = "656ef2d0-ae68-5445-9ca0-591084a874a2" -version = "0.3.30+0" +version = "0.3.33+0" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.29+0" +version = "0.3.27+1" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.7+0" +version = "0.8.5+0" [[deps.OpenSSH_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "OpenSSL_jll", "Zlib_jll"] -git-tree-sha1 = "301412a644646fdc0ad67d0a87487466b491e53d" +git-tree-sha1 = "57baa4b81a24c2910afbb6d853aa0685e4312bf7" uuid = "9bd350c2-7e96-507f-8002-3f2e150b4e1b" -version = "10.2.1+0" +version = "10.3.1+0" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "NetworkOptions", "OpenSSL_jll", "Sockets"] @@ -1616,9 +1633,10 @@ uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" version = "1.6.1" [[deps.OpenSSL_jll]] -deps = ["Artifacts", "Libdl"] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "2ac022577e5eac7da040de17776d51bb770cd895" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.5.4+0" +version = "3.5.6+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -1638,28 +1656,22 @@ uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.8.1" [[deps.OrdinaryDiffEq]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FillArrays", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "MacroTools", "MuladdMacro", "NonlinearSolve", "OrdinaryDiffEqAdamsBashforthMoulton", "OrdinaryDiffEqBDF", "OrdinaryDiffEqCore", "OrdinaryDiffEqDefault", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqExplicitRK", "OrdinaryDiffEqExponentialRK", "OrdinaryDiffEqExtrapolation", "OrdinaryDiffEqFIRK", "OrdinaryDiffEqFeagin", "OrdinaryDiffEqFunctionMap", "OrdinaryDiffEqHighOrderRK", "OrdinaryDiffEqIMEXMultistep", "OrdinaryDiffEqLinear", "OrdinaryDiffEqLowOrderRK", "OrdinaryDiffEqLowStorageRK", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqNordsieck", "OrdinaryDiffEqPDIRK", "OrdinaryDiffEqPRK", "OrdinaryDiffEqQPRK", "OrdinaryDiffEqRKN", "OrdinaryDiffEqRosenbrock", "OrdinaryDiffEqSDIRK", "OrdinaryDiffEqSSPRK", "OrdinaryDiffEqStabilizedIRK", "OrdinaryDiffEqStabilizedRK", "OrdinaryDiffEqSymplecticRK", "OrdinaryDiffEqTsit5", "OrdinaryDiffEqVerner", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleNonlinearSolve", "SparseArrays", "Static", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "924e1db15095c7df6b844231c00c40d756a7553d" +deps = ["ADTypes", "CommonSolve", "DocStringExtensions", "OrdinaryDiffEqBDF", "OrdinaryDiffEqCore", "OrdinaryDiffEqDefault", "OrdinaryDiffEqRosenbrock", "OrdinaryDiffEqTsit5", "OrdinaryDiffEqVerner", "SciMLBase"] +git-tree-sha1 = "4c411ca0fa291015bc4c23058799a7280c4223e4" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.108.0" - -[[deps.OrdinaryDiffEqAdamsBashforthMoulton]] -deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqLowOrderRK", "Polyester", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static"] -git-tree-sha1 = "8307937159c3aeec5f19f4b661d82d96d25a3ff1" -uuid = "89bda076-bce5-4f1c-845f-551c83cdda9a" -version = "1.9.0" +version = "7.0.0" [[deps.OrdinaryDiffEqBDF]] -deps = ["ADTypes", "ArrayInterface", "DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqSDIRK", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "22b0c4f7939af140b7f7f4ce2cce90d9f72fa515" +deps = ["ADTypes", "ArrayInterface", "DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqSDIRK", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "2a193931b5dc2400f7f4fb7593b23e0aca96a581" uuid = "6ad6398a-0878-4a85-9266-38940aa047c8" -version = "1.22.0" +version = "2.0.0" [[deps.OrdinaryDiffEqCore]] -deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ConcreteStructs", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FillArrays", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "Polyester", "PrecompileTools", "Preferences", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Static", "StaticArrayInterface", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "b0b386226690c23ebc771cd68a37d08c55b60924" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ConcreteStructs", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "PrecompileTools", "Preferences", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "86c210d134f09139a294f0329006d6cc20275650" uuid = "bbf590c4-e513-4bbe-9b18-05decba2e5d8" -version = "3.21.0" +version = "4.0.0" [deps.OrdinaryDiffEqCore.extensions] OrdinaryDiffEqCoreMooncakeExt = "Mooncake" @@ -1671,174 +1683,83 @@ version = "3.21.0" [[deps.OrdinaryDiffEqDefault]] deps = ["ADTypes", "DiffEqBase", "EnumX", "LinearAlgebra", "LinearSolve", "OrdinaryDiffEqBDF", "OrdinaryDiffEqCore", "OrdinaryDiffEqRosenbrock", "OrdinaryDiffEqTsit5", "OrdinaryDiffEqVerner", "PrecompileTools", "Preferences", "Reexport", "SciMLBase"] -git-tree-sha1 = "0f40d969dd10d1b226c864bf7dc4b4b8933bc130" +git-tree-sha1 = "c2ad58656aff6d468109df04a246b018e92b21d8" uuid = "50262376-6c5a-4cf5-baba-aaf4f84d72d7" -version = "1.13.0" +version = "2.1.0" [[deps.OrdinaryDiffEqDifferentiation]] -deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "LinearAlgebra", "LinearSolve", "OrdinaryDiffEqCore", "SciMLBase", "SciMLOperators", "SparseMatrixColorings", "StaticArrayInterface", "StaticArrays"] -git-tree-sha1 = "e9c79382bf6c8b93c1d10bbc50b5fe70dffe67c0" +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "LinearAlgebra", "LinearSolve", "OrdinaryDiffEqCore", "SciMLBase", "SciMLOperators", "SparseMatrixColorings", "StaticArraysCore"] +git-tree-sha1 = "faf3fe4824557bc72aa126a845586f71d377a70a" uuid = "4302a76b-040a-498a-8c04-15b101fed76b" -version = "2.1.0" +version = "3.0.0" weakdeps = ["SparseArrays"] [deps.OrdinaryDiffEqDifferentiation.extensions] OrdinaryDiffEqDifferentiationSparseArraysExt = "SparseArrays" -[[deps.OrdinaryDiffEqExplicitRK]] -deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] -git-tree-sha1 = "c5b900878b088776b8d1bd5a7b1d94e301e21c4e" -uuid = "9286f039-9fbf-40e8-bf65-aa933bdc4db0" -version = "1.9.0" - [[deps.OrdinaryDiffEqExponentialRK]] deps = ["ADTypes", "DiffEqBase", "ExponentialUtilities", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "RecursiveArrayTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "72156f954b199ff23dada0e8c0f12c44503b5cf9" +git-tree-sha1 = "689bcd9e3deff96fb551cccf53e31113d0c90325" uuid = "e0540318-69ee-4070-8777-9e2de6de23de" -version = "1.13.0" - -[[deps.OrdinaryDiffEqExtrapolation]] -deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "FastPower", "LinearSolve", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "Polyester", "RecursiveArrayTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "129730b7b6cb60cc9c18e0db5861f4a7ed2c30b9" -uuid = "becaefa8-8ca2-5cf9-886d-c06f3d2bd2c4" -version = "1.16.0" +version = "2.0.0" [[deps.OrdinaryDiffEqFIRK]] -deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "FastGaussQuadrature", "FastPower", "LinearAlgebra", "LinearSolve", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "Polyester", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators"] -git-tree-sha1 = "342c716e0c15ab44203f68a78f98800ec560df82" +deps = ["ADTypes", 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"OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static"] -git-tree-sha1 = "9e351a8f923c843adb48945318437e051f6ee139" -uuid = "04162be5-8125-4266-98ed-640baecc6514" -version = "1.8.0" - -[[deps.OrdinaryDiffEqRKN]] -deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "RecursiveArrayTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "b086c6d1b4153c9ff4b3f184a9ba7829413cc502" -uuid = "af6ede74-add8-4cfd-b1df-9a4dbb109d7a" -version = "1.10.0" +version = "2.0.0" [[deps.OrdinaryDiffEqRosenbrock]] -deps = ["ADTypes", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static"] -git-tree-sha1 = "f11347f3f01a5b00dae2b565e73795ee138cdc68" +deps = ["ADTypes", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqRosenbrockTableaus", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase"] +git-tree-sha1 = "803334224154e4a2a9d984547dd4449d3ca71c63" uuid = "43230ef6-c299-4910-a778-202eb28ce4ce" -version = "1.25.0" +version = "2.0.0" + +[[deps.OrdinaryDiffEqRosenbrockTableaus]] +git-tree-sha1 = "66acd57301ea9c79ff92b13b72135af258c141ab" +uuid = "b4bd8bb3-f80f-41d2-9b21-73a655b304b9" +version = "2.0.0" [[deps.OrdinaryDiffEqSDIRK]] -deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] -git-tree-sha1 = "0b766d820e3b948881f1f246899de9ef3d329224" +deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "8df990b85ea063a20df3f1b1dddab9d0afec985c" uuid = "2d112036-d095-4a1e-ab9a-08536f3ecdbf" -version = "1.12.0" - -[[deps.OrdinaryDiffEqSSPRK]] -deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static", "StaticArrays"] -git-tree-sha1 = "8abc61382a0c6469aa9c3bff2d61c9925a088320" -uuid = "669c94d9-1f4b-4b64-b377-1aa079aa2388" -version = "1.11.0" - -[[deps.OrdinaryDiffEqStabilizedIRK]] -deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqStabilizedRK", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays"] -git-tree-sha1 = "cf6856c731ddf9866e3e22612cce5e270f071545" -uuid = "e3e12d00-db14-5390-b879-ac3dd2ef6296" -version = "1.11.0" - -[[deps.OrdinaryDiffEqStabilizedRK]] -deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays"] -git-tree-sha1 = "d156a972fa7bc37bf8377d33a7d51d152e354d4c" -uuid = "358294b1-0aab-51c3-aafe-ad5ab194a2ad" -version = "1.8.0" - -[[deps.OrdinaryDiffEqSymplecticRK]] -deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "RecursiveArrayTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "9b783806fe2dc778649231cb3932cb71b63222d9" -uuid = "fa646aed-7ef9-47eb-84c4-9443fc8cbfa8" -version = "1.11.0" +version = "2.0.0" [[deps.OrdinaryDiffEqTsit5]] -deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static", "TruncatedStacktraces"] -git-tree-sha1 = "8be4cba85586cd2efa6c76d1792c548758610901" +deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "d9cedcfa2cdae8859b4510b9d01ada9852cd6d9d" uuid = "b1df2697-797e-41e3-8120-5422d3b24e4a" -version = "1.9.0" +version = "2.0.0" [[deps.OrdinaryDiffEqVerner]] -deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static", "TruncatedStacktraces"] -git-tree-sha1 = "5ca5dbbfea89e14f283ce9fe2301c528ff4ec007" +deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "fb8ae6a290beed2ef61fa2e7571d921e1100c365" uuid = "79d7bb75-1356-48c1-b8c0-6832512096c2" -version = "1.11.0" +version = "2.0.0" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.44.0+1" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] @@ -1852,9 +1773,9 @@ weakdeps = ["StatsBase"] [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "0662b083e11420952f2e62e17eddae7fc07d5997" +git-tree-sha1 = "58e5ed5e386e156bd93e86b305ebd21ac63d2d04" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" -version = "1.57.0+0" +version = "1.57.1+0" [[deps.Parameters]] deps = ["OrderedCollections", "UnPack"] @@ -1864,9 +1785,9 @@ version = "0.12.3" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "7d2f8f21da5db6a806faf7b9b292296da42b2810" +git-tree-sha1 = "5d5e0a78e971354b1c7bff0655d11fdc1b0e12c8" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.3" +version = "2.8.4" [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] @@ -1877,7 +1798,7 @@ version = "0.44.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.12.1" +version = "1.11.0" weakdeps = ["REPL"] [deps.Pkg.extensions] @@ -1921,12 +1842,6 @@ git-tree-sha1 = "67afbcbe9e184d6729a92a022147ed4cf972ca7b" uuid = "e409e4f3-bfea-5376-8464-e040bb5c01ab" version = "0.4.7" -[[deps.Polyester]] -deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "16bbc30b5ebea91e9ce1671adc03de2832cff552" -uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.19" - [[deps.PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] git-tree-sha1 = "645bed98cd47f72f67316fd42fc47dee771aefcd" @@ -1961,9 +1876,9 @@ version = "4.1.1" [[deps.PreallocationTools]] deps = ["Adapt", "ArrayInterface", "PrecompileTools"] -git-tree-sha1 = "dc8d6bde5005a0eac05ae8faf1eceaaca166cfa4" +git-tree-sha1 = "e16b73bf892c55d16d53c9c0dbd0fb31cb7e25da" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "1.1.2" +version = "1.2.0" [deps.PreallocationTools.extensions] PreallocationToolsForwardDiffExt = "ForwardDiff" @@ -1977,9 +1892,9 @@ version = "1.1.2" [[deps.PrecompileTools]] deps = ["Preferences"] -git-tree-sha1 = "07a921781cab75691315adc645096ed5e370cb77" +git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.3.3" +version = "1.2.1" [[deps.Preferences]] deps = ["TOML"] @@ -2029,9 +1944,9 @@ version = "6.10.2+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9da16da70037ba9d701192e27befedefb91ec284" +git-tree-sha1 = "5e8e8b0ab68215d7a2b14b9921a946fee794749e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.11.2" +version = "2.11.3" [deps.QuadGK.extensions] QuadGKEnzymeExt = "Enzyme" @@ -2041,9 +1956,9 @@ version = "2.11.2" [[deps.QuasiArrays]] deps = ["ArrayLayouts", "DomainSets", "FillArrays", "LazyArrays", "LinearAlgebra", "StaticArrays"] -git-tree-sha1 = "2d7e5e45c17ce9a9ee9d4ef5e304ed3d82f622a8" +git-tree-sha1 = "e95540632f0bc3e7eb35f74c492e98a5124a4622" uuid = "c4ea9172-b204-11e9-377d-29865faadc5c" -version = "0.13.5" +version = "0.13.6" weakdeps = ["SparseArrays", "StatsBase"] [deps.QuasiArrays.extensions] @@ -2051,7 +1966,7 @@ weakdeps = ["SparseArrays", "StatsBase"] QuasiArraysStatsBaseExt = "StatsBase" [[deps.REPL]] -deps = ["InteractiveUtils", "JuliaSyntaxHighlighting", "Markdown", "Sockets", "StyledStrings", "Unicode"] +deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" version = "1.11.0" @@ -2091,16 +2006,19 @@ weakdeps = ["FillArrays", "LazyArrays", "LinearAlgebra"] [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "LinearAlgebra", "PrecompileTools", "RecipesBase", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "18d2a6fd1ea9a8205cadb3a5704f8e51abdd748b" +git-tree-sha1 = "57b6fb3932fc8d1fc911f840d2c9de5fe3ba5008" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.48.0" +version = "4.3.0" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsCUDAExt = "CUDA" RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsFastBroadcastPolyesterExt = ["FastBroadcast", "Polyester"] RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsKernelAbstractionsExt = "KernelAbstractions" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsMooncakeExt = "Mooncake" RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] RecursiveArrayToolsStatisticsExt = "Statistics" @@ -2110,11 +2028,14 @@ version = "3.48.0" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" @@ -2170,9 +2091,9 @@ weakdeps = ["Plots"] [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "7257165d5477fd1025f7cb656019dcb6b0512c38" +git-tree-sha1 = "cfcdc949c4660544ab0fdeed169561cb22f835f4" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.17" +version = "0.5.18" [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" @@ -2190,10 +2111,10 @@ uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" version = "0.6.43" [[deps.SciMLBase]] -deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Moshi", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "8787e28326c99b0c9c706b51da525ad09d03c56f" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "Random", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] +git-tree-sha1 = "450a8405f96d0a7c6caabed0852def06ba8c6bf1" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.149.0" +version = "3.7.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2201,7 +2122,6 @@ version = "2.149.0" SciMLBaseDistributionsExt = "Distributions" SciMLBaseEnzymeExt = "Enzyme" SciMLBaseForwardDiffExt = "ForwardDiff" - SciMLBaseMLStyleExt = "MLStyle" SciMLBaseMakieExt = "Makie" SciMLBaseMeasurementsExt = "Measurements" SciMLBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" @@ -2221,7 +2141,6 @@ version = "2.149.0" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - MLStyle = "d8e11817-5142-5d16-987a-aa16d5891078" Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" @@ -2242,9 +2161,9 @@ version = "0.1.3" [[deps.SciMLJacobianOperators]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DifferentiationInterface", "FastClosures", "LinearAlgebra", "SciMLBase", "SciMLOperators"] -git-tree-sha1 = "e96d5e96debf7f80a50d0b976a13dea556ccfd3a" +git-tree-sha1 = "7156a5b51cba1bea33a82a036939ead4131f92bc" uuid = "19f34311-ddf3-4b8b-af20-060888a46c0e" -version = "0.1.12" +version = "0.1.13" [[deps.SciMLLogging]] deps = ["Logging", "LoggingExtras", "Preferences"] @@ -2260,9 +2179,9 @@ version = "1.9.1" [[deps.SciMLOperators]] deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra"] -git-tree-sha1 = "794c760e6aafe9f40dcd7dd30526ea33f0adc8b7" +git-tree-sha1 = "0e34162268883db01c04f988895a80d0659071bb" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "1.15.1" +version = "1.17.0" weakdeps = ["SparseArrays", "StaticArraysCore"] [deps.SciMLOperators.extensions] @@ -2315,9 +2234,9 @@ version = "1.2.0" [[deps.SimpleNonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "744c3f0fb186ad28376199c1e72ca39d0c614b5d" +git-tree-sha1 = "d688de789b7e643326caf9a1051376dadbcd8873" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "2.11.0" +version = "2.11.1" [deps.SimpleNonlinearSolve.extensions] SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" @@ -2347,7 +2266,7 @@ version = "1.2.2" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -version = "1.12.0" +version = "1.11.0" [[deps.SparseConnectivityTracer]] deps = ["ADTypes", "DocStringExtensions", "FillArrays", "LinearAlgebra", "Random", "SparseArrays"] @@ -2371,33 +2290,38 @@ version = "1.2.1" [[deps.SparseMatrixColorings]] deps = ["ADTypes", "DocStringExtensions", "LinearAlgebra", "PrecompileTools", "Random", "SparseArrays"] -git-tree-sha1 = "7b2263c87aa890bf6d18ae05cedbe259754e3f34" +git-tree-sha1 = "f63d76c7b7c329cf11badd564fd8ba877b09c3fe" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.4.24" +version = "0.4.27" [deps.SparseMatrixColorings.extensions] - SparseMatrixColoringsCUDAExt = "CUDA" + SparseMatrixColoringsCUDAExt = ["CUDA", "cuSPARSE"] SparseMatrixColoringsCliqueTreesExt = "CliqueTrees" SparseMatrixColoringsColorsExt = "Colors" + SparseMatrixColoringsGPUArraysExt = "GPUArrays" SparseMatrixColoringsJuMPExt = ["JuMP", "MathOptInterface"] [deps.SparseMatrixColorings.weakdeps] CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" + GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" JuMP = "4076af6c-e467-56ae-b986-b466b2749572" MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" + cuSPARSE = "b26da814-b3bc-49ef-b0ee-c816305aa060" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "5acc6a41b3082920f79ca3c759acbcecf18a8d78" +git-tree-sha1 = "2700b235561b0335d5bef7097a111dc513b8655e" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.7.1" -weakdeps = ["ChainRulesCore"] +version = "2.7.2" [deps.SpecialFunctions.extensions] SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" + [deps.SpecialFunctions.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + [[deps.StableRNGs]] deps = ["Random"] git-tree-sha1 = "4f96c596b8c8258cc7d3b19797854d368f243ddc" @@ -2406,15 +2330,15 @@ version = "1.0.4" [[deps.Static]] deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools", "SciMLPublic"] -git-tree-sha1 = "49440414711eddc7227724ae6e570c7d5559a086" +git-tree-sha1 = "bb072715f158b59ad8819ff80da5ffa90cce6ceb" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.3.1" +version = "1.4.0" [[deps.StaticArrayInterface]] deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "SciMLPublic", "Static"] -git-tree-sha1 = "aa1ea41b3d45ac449d10477f65e2b40e3197a0d2" +git-tree-sha1 = "2a635e15d5035c53b345077c947f31ff91744078" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.9.0" +version = "1.10.0" weakdeps = ["OffsetArrays", "StaticArrays"] [deps.StaticArrayInterface.extensions] @@ -2426,12 +2350,15 @@ deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] git-tree-sha1 = "246a8bb2e6667f832eea063c3a56aef96429a3db" uuid = "90137ffa-7385-5640-81b9-e52037218182" version = "1.9.18" -weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] StaticArraysChainRulesCoreExt = "ChainRulesCore" StaticArraysStatisticsExt = "Statistics" + [deps.StaticArrays.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" + [[deps.StaticArraysCore]] git-tree-sha1 = "6ab403037779dae8c514bad259f32a447262455a" uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" @@ -2464,17 +2391,14 @@ deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Re git-tree-sha1 = "91f091a8716a6bb38417a6e6f274602a19aaa685" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" version = "1.5.2" -weakdeps = ["ChainRulesCore", "InverseFunctions"] [deps.StatsFuns.extensions] StatsFunsChainRulesCoreExt = "ChainRulesCore" StatsFunsInverseFunctionsExt = "InverseFunctions" -[[deps.StrideArraysCore]] -deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "83151ba8065a73f53ca2ae98bc7274d817aa30f2" -uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.5.8" + [deps.StatsFuns.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" [[deps.StringEncodings]] deps = ["Libiconv_jll"] @@ -2484,9 +2408,9 @@ version = "0.3.7" [[deps.StructArrays]] deps = ["ConstructionBase", "DataAPI", "Tables"] -git-tree-sha1 = "a2c37d815bf00575332b7bd0389f771cb7987214" +git-tree-sha1 = "ad8002667372439f2e3611cfd14097e03fa4bccd" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.7.2" +version = "0.7.3" [deps.StructArrays.extensions] StructArraysAdaptExt = "Adapt" @@ -2520,13 +2444,13 @@ version = "7.12.1+0" [[deps.SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "7.8.3+2" +version = "7.7.0+0" [[deps.SummationByPartsOperators]] -deps = ["ArgCheck", "AutoHashEquals", "FFTW", "InteractiveUtils", "LinearAlgebra", "LoopVectorization", "MuladdMacro", "PolynomialBases", "PrecompileTools", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SimpleUnPack", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Unrolled"] -git-tree-sha1 = "69342830cc590266758f8a7c584d5a2dd92ffca3" +deps = ["ArgCheck", "AutoHashEquals", "FFTW", "InteractiveUtils", "LinearAlgebra", "LoopVectorization", "MuladdMacro", "PolynomialBases", "PrecompileTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleUnPack", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Unrolled"] +git-tree-sha1 = "5c7e74b0e62ab0855582b2b624ddda4065e30afd" uuid = "9f78cca6-572e-554e-b819-917d2f1cf240" -version = "0.5.90" +version = "0.5.92" [deps.SummationByPartsOperators.extensions] SummationByPartsOperatorsBandedMatricesExt = "BandedMatrices" @@ -2543,10 +2467,10 @@ version = "0.5.90" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" [[deps.Sundials]] -deps = ["Accessors", "ArrayInterface", "CEnum", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "LinearSolve", "Logging", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SparseArrays", "Sundials_jll", "SymbolicIndexingInterface"] -git-tree-sha1 = "2d27edb89b7c555a57b8f22bfde92d6828d11cee" +deps = ["Accessors", "ArrayInterface", "CEnum", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "LinearSolve", "Logging", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLLogging", "SparseArrays", "Sundials_jll", "SymbolicIndexingInterface"] +git-tree-sha1 = "b2bdc0fe9e7987ae15c9b9507dc26ea048ece9f3" uuid = "c3572dad-4567-51f8-b174-8c6c989267f4" -version = "5.1.0" +version = "5.3.0" [[deps.Sundials_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS32_jll", "SuiteSparse32_jll"] @@ -2705,9 +2629,9 @@ version = "0.10.12" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "9cce64c0fdd1960b597ba7ecda2950b5ed957438" +git-tree-sha1 = "b29c22e245d092b8b4e8d3c09ad7baa586d9f573" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.8.2+0" +version = "5.8.3+0" [[deps.Xorg_libICE_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2783,9 +2707,9 @@ version = "0.9.12+0" [[deps.Xorg_libpciaccess_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "4909eb8f1cbf6bd4b1c30dd18b2ead9019ef2fad" +git-tree-sha1 = "58972370b81423fc546c56a60ed1a009450177c3" uuid = "a65dc6b1-eb27-53a1-bb3e-dea574b5389e" -version = "0.18.1+0" +version = "0.19.0+0" [[deps.Xorg_libxcb_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXau_jll", "Xorg_libXdmcp_jll"] @@ -2843,9 +2767,9 @@ version = "1.4.7+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "00af7ebdc563c9217ecc67776d1bbf037dbcebf4" +git-tree-sha1 = "429722587208f02b1cecbddcd20133df2f1ed796" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.44.0+0" +version = "2.47.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2874,7 +2798,7 @@ version = "4.3.6+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.3.1+2" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2896,9 +2820,9 @@ version = "0.61.1+0" [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" +git-tree-sha1 = "850b06095ee71f0135d644ffd8a52850699581ed" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.13.1+0" +version = "3.13.3+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] @@ -2909,7 +2833,7 @@ version = "0.17.4+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.15.0+0" +version = "5.11.0+0" [[deps.libdecor_jll]] deps = ["Artifacts", "Dbus_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pango_jll", "Wayland_jll", "xkbcommon_jll"] @@ -2943,9 +2867,9 @@ version = "1.28.1+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" +git-tree-sha1 = "e51150d5ab85cee6fc36726850f0e627ad2e4aba" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.55+0" +version = "1.6.58+0" [[deps.libsodium_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2974,7 +2898,7 @@ version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.64.0+1" +version = "1.59.0+0" [[deps.oneTBB_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] @@ -2983,9 +2907,9 @@ uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" version = "2022.0.0+1" [[deps.p7zip_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.7.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] diff --git a/benchmarks/SimpleHandwrittenPDE/Project.toml b/benchmarks/SimpleHandwrittenPDE/Project.toml index 0bbaf754f..4e6effa28 100644 --- a/benchmarks/SimpleHandwrittenPDE/Project.toml +++ b/benchmarks/SimpleHandwrittenPDE/Project.toml @@ -8,6 +8,13 @@ LSODA = "7f56f5a3-f504-529b-bc02-0b1fe5e64312" LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" LinearSolve = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" +OrdinaryDiffEqBDF = "6ad6398a-0878-4a85-9266-38940aa047c8" +OrdinaryDiffEqExponentialRK = "e0540318-69ee-4070-8777-9e2de6de23de" +OrdinaryDiffEqFIRK = "5960d6e9-dd7a-4743-88e7-cf307b64f125" +OrdinaryDiffEqHighOrderRK = "d28bc4f8-55e1-4f49-af69-84c1a99f0f58" +OrdinaryDiffEqIMEXMultistep = "9f002381-b378-40b7-97a6-27a27c83f129" +OrdinaryDiffEqRosenbrock = "43230ef6-c299-4910-a778-202eb28ce4ce" +OrdinaryDiffEqSDIRK = "2d112036-d095-4a1e-ab9a-08536f3ecdbf" Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" SciMLBenchmarks = "31c91b34-3c75-11e9-0341-95557aab0344" SciMLOperators = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" @@ -20,11 +27,18 @@ Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" [compat] AlgebraicMultigrid = "1" ClassicalOrthogonalPolynomials = "0.15" -DiffEqDevTools = "2.22" +DiffEqDevTools = "3" IncompleteLU = "0.2" LSODA = "0.7" LinearSolve = "3" -OrdinaryDiffEq = "6" +OrdinaryDiffEq = "7" +OrdinaryDiffEqBDF = "2" +OrdinaryDiffEqExponentialRK = "2" +OrdinaryDiffEqFIRK = "2" +OrdinaryDiffEqHighOrderRK = "2" +OrdinaryDiffEqIMEXMultistep = "2" +OrdinaryDiffEqRosenbrock = "2" +OrdinaryDiffEqSDIRK = "2" Plots = "1.4" SciMLBenchmarks = "0.1" SciMLOperators = "1" diff --git a/benchmarks/SimpleHandwrittenPDE/allen_cahn_fdm_wpd.jmd b/benchmarks/SimpleHandwrittenPDE/allen_cahn_fdm_wpd.jmd index 3d37ebcb7..425735f2d 100644 --- a/benchmarks/SimpleHandwrittenPDE/allen_cahn_fdm_wpd.jmd +++ b/benchmarks/SimpleHandwrittenPDE/allen_cahn_fdm_wpd.jmd @@ -26,6 +26,7 @@ The spatial derivative operators are represented via finite difference approxima ```julia using OrdinaryDiffEq +using OrdinaryDiffEqBDF, OrdinaryDiffEqExponentialRK, OrdinaryDiffEqFIRK, OrdinaryDiffEqIMEXMultistep, OrdinaryDiffEqSDIRK using DiffEqDevTools using SciMLOperators using LinearSolve @@ -71,7 +72,7 @@ end; N = 128 # Number of grid points L = 2.0 # Domain length xs, prob = allen_cahn(N, L) -@time sol = solve(prob, AutoVern7(RadauIIA5(autodiff=false)); dt=1e-2, abstol=1e-14, reltol=1e-14, adaptive=true) +@time sol = solve(prob, AutoVern7(RadauIIA5(autodiff=AutoFiniteDiff())); dt=1e-2, abstol=1e-14, reltol=1e-14, adaptive=true) test_sol = TestSolution(sol) # Reference solution for error estimation @@ -282,18 +283,18 @@ setups = [ # Dict(:alg => KenCarp3(linsolve=KrylovJL_GMRES(), :dts => 1e-2 * ones(N), :adaptive => true), # Dict(:alg => KenCarp4(linsolve=KrylovJL_GMRES(), :dts => 1e-2 * ones(N), :adaptive => true), # Dict(:alg => KenCarp5(linsolve=KrylovJL_GMRES(), :dts => 1e-2 * ones(N), :adaptive => true), - Dict(:alg => KenCarp3(linsolve=KrylovJL_GMRES(), precs = inc_lu, concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), - Dict(:alg => KenCarp4(linsolve=KrylovJL_GMRES(), precs = inc_lu, concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), - Dict(:alg => KenCarp5(linsolve=KrylovJL_GMRES(), precs = inc_lu, concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), - Dict(:alg => KenCarp3(linsolve=KrylovJL_GMRES(), precs = w_diag, concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), - Dict(:alg => KenCarp4(linsolve=KrylovJL_GMRES(), precs = w_diag, concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), - Dict(:alg => KenCarp5(linsolve=KrylovJL_GMRES(), precs = w_diag, concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), - Dict(:alg => KenCarp3(linsolve=KrylovJL_GMRES(), precs = amg, concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), - Dict(:alg => KenCarp4(linsolve=KrylovJL_GMRES(), precs = amg, concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), - Dict(:alg => KenCarp5(linsolve=KrylovJL_GMRES(), precs = amg, concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), - Dict(:alg => KenCarp3(linsolve=KrylovJL_GMRES(), precs = amg2, concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), - Dict(:alg => KenCarp4(linsolve=KrylovJL_GMRES(), precs = amg2, concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), - Dict(:alg => KenCarp5(linsolve=KrylovJL_GMRES(), precs = amg2, concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), + Dict(:alg => KenCarp3(linsolve=KrylovJL_GMRES(; precs = inc_lu), concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), + Dict(:alg => KenCarp4(linsolve=KrylovJL_GMRES(; precs = inc_lu), concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), + Dict(:alg => KenCarp5(linsolve=KrylovJL_GMRES(; precs = inc_lu), concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), + Dict(:alg => KenCarp3(linsolve=KrylovJL_GMRES(; precs = w_diag), concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), + Dict(:alg => KenCarp4(linsolve=KrylovJL_GMRES(; precs = w_diag), concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), + Dict(:alg => KenCarp5(linsolve=KrylovJL_GMRES(; precs = w_diag), concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), + Dict(:alg => KenCarp3(linsolve=KrylovJL_GMRES(; precs = amg), concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), + Dict(:alg => KenCarp4(linsolve=KrylovJL_GMRES(; precs = amg), concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), + Dict(:alg => KenCarp5(linsolve=KrylovJL_GMRES(; precs = amg), concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), + Dict(:alg => KenCarp3(linsolve=KrylovJL_GMRES(; precs = amg2), concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), + Dict(:alg => KenCarp4(linsolve=KrylovJL_GMRES(; precs = amg2), concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), + Dict(:alg => KenCarp5(linsolve=KrylovJL_GMRES(; precs = amg2), concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), Dict(:alg => KenCarp3(linsolve=KrylovJL_GMRES()), :dts => 1e-2 * ones(N), :adaptive => true), Dict(:alg => KenCarp4(linsolve=KrylovJL_GMRES()), :dts => 1e-2 * ones(N), :adaptive => true), Dict(:alg => KenCarp5(linsolve=KrylovJL_GMRES()), :dts => 1e-2 * ones(N), :adaptive => true), diff --git a/benchmarks/SimpleHandwrittenPDE/allen_cahn_spectral_wpd.jmd b/benchmarks/SimpleHandwrittenPDE/allen_cahn_spectral_wpd.jmd index bf65aff1c..3fceb1409 100644 --- a/benchmarks/SimpleHandwrittenPDE/allen_cahn_spectral_wpd.jmd +++ b/benchmarks/SimpleHandwrittenPDE/allen_cahn_spectral_wpd.jmd @@ -27,6 +27,7 @@ The spatial derivative operators are represented via Chebyshev pseudospectral ap ```julia using OrdinaryDiffEq +using OrdinaryDiffEqBDF, OrdinaryDiffEqExponentialRK, OrdinaryDiffEqIMEXMultistep, OrdinaryDiffEqRosenbrock, OrdinaryDiffEqSDIRK using DiffEqDevTools using SciMLOperators using LinearSolve @@ -82,7 +83,7 @@ N = 128 eps = 1e-3 xs, prob = allen_cahn(N, eps); -@time sol = solve(prob, Rodas5(autodiff=false); dt=1e-4, reltol=1e-12, abstol=1e-12); +@time sol = solve(prob, Rodas5(autodiff=AutoFiniteDiff()); dt=1e-4, reltol=1e-12, abstol=1e-12); test_sol = TestSolution(sol); # Reference solution for error estimation diff --git a/benchmarks/SimpleHandwrittenPDE/burgers_fdm_wpd.jmd b/benchmarks/SimpleHandwrittenPDE/burgers_fdm_wpd.jmd index 0ffb02e9a..f4a58d5b8 100644 --- a/benchmarks/SimpleHandwrittenPDE/burgers_fdm_wpd.jmd +++ b/benchmarks/SimpleHandwrittenPDE/burgers_fdm_wpd.jmd @@ -26,6 +26,7 @@ The spatial derivative operators are represented via finite difference approxima ```julia using OrdinaryDiffEq +using OrdinaryDiffEqBDF, OrdinaryDiffEqExponentialRK, OrdinaryDiffEqIMEXMultistep, OrdinaryDiffEqRosenbrock, OrdinaryDiffEqSDIRK using DiffEqDevTools using SciMLOperators using LinearSolve @@ -71,7 +72,7 @@ Using an adaptive timestepping method to solve the system of ordinary differenti N = 128 L = 1.0 xs, prob = burgers(N, L) -sol = solve(prob, AutoVern7(Rodas5(autodiff=false)); abstol=1e-14, reltol=1e-14, adaptive=true) +sol = solve(prob, AutoVern7(Rodas5(autodiff=AutoFiniteDiff())); abstol=1e-14, reltol=1e-14, adaptive=true) test_sol = TestSolution(sol); # Reference solution for error estimation @@ -284,18 +285,18 @@ setups = [ # Dict(:alg => KenCarp3(linsolve=KrylovJL_GMRES(), :dts => 1e-2 * ones(N), :adaptive => true), # Dict(:alg => KenCarp4(linsolve=KrylovJL_GMRES(), :dts => 1e-2 * ones(N), :adaptive => true), # Dict(:alg => KenCarp5(linsolve=KrylovJL_GMRES(), :dts => 1e-2 * ones(N), :adaptive => true), - Dict(:alg => KenCarp3(linsolve=KrylovJL_GMRES(), precs = inc_lu, concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), - Dict(:alg => KenCarp4(linsolve=KrylovJL_GMRES(), precs = inc_lu, concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), - Dict(:alg => KenCarp5(linsolve=KrylovJL_GMRES(), precs = inc_lu, concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), - Dict(:alg => KenCarp3(linsolve=KrylovJL_GMRES(), precs = w_diag, concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), - Dict(:alg => KenCarp4(linsolve=KrylovJL_GMRES(), precs = w_diag, concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), - Dict(:alg => KenCarp5(linsolve=KrylovJL_GMRES(), precs = w_diag, concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), - Dict(:alg => KenCarp3(linsolve=KrylovJL_GMRES(), precs = amg, concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), - Dict(:alg => KenCarp4(linsolve=KrylovJL_GMRES(), precs = amg, concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), - Dict(:alg => KenCarp5(linsolve=KrylovJL_GMRES(), precs = amg, concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), - Dict(:alg => KenCarp3(linsolve=KrylovJL_GMRES(), precs = amg2, concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), - Dict(:alg => KenCarp4(linsolve=KrylovJL_GMRES(), precs = amg2, concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), - Dict(:alg => KenCarp5(linsolve=KrylovJL_GMRES(), precs = amg2, concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), + Dict(:alg => KenCarp3(linsolve=KrylovJL_GMRES(; precs = inc_lu), concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), + Dict(:alg => KenCarp4(linsolve=KrylovJL_GMRES(; precs = inc_lu), concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), + Dict(:alg => KenCarp5(linsolve=KrylovJL_GMRES(; precs = inc_lu), concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), + Dict(:alg => KenCarp3(linsolve=KrylovJL_GMRES(; precs = w_diag), concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), + Dict(:alg => KenCarp4(linsolve=KrylovJL_GMRES(; precs = w_diag), concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), + Dict(:alg => KenCarp5(linsolve=KrylovJL_GMRES(; precs = w_diag), concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), + Dict(:alg => KenCarp3(linsolve=KrylovJL_GMRES(; precs = amg), concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), + Dict(:alg => KenCarp4(linsolve=KrylovJL_GMRES(; precs = amg), concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), + Dict(:alg => KenCarp5(linsolve=KrylovJL_GMRES(; precs = amg), concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), + Dict(:alg => KenCarp3(linsolve=KrylovJL_GMRES(; precs = amg2), concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), + Dict(:alg => KenCarp4(linsolve=KrylovJL_GMRES(; precs = amg2), concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), + Dict(:alg => KenCarp5(linsolve=KrylovJL_GMRES(; precs = amg2), concrete_jac = true), :dts => 1e-2 * ones(N), :adaptive => true), Dict(:alg => KenCarp3(linsolve=KrylovJL_GMRES()), :dts => 1e-2 * ones(N), :adaptive => true), Dict(:alg => KenCarp4(linsolve=KrylovJL_GMRES()), :dts => 1e-2 * ones(N), :adaptive => true), Dict(:alg => KenCarp5(linsolve=KrylovJL_GMRES()), :dts => 1e-2 * ones(N), :adaptive => true), diff --git a/benchmarks/SimpleHandwrittenPDE/burgers_spectral_wpd.jmd b/benchmarks/SimpleHandwrittenPDE/burgers_spectral_wpd.jmd index 003fbfd15..bb635ce1f 100644 --- a/benchmarks/SimpleHandwrittenPDE/burgers_spectral_wpd.jmd +++ b/benchmarks/SimpleHandwrittenPDE/burgers_spectral_wpd.jmd @@ -26,6 +26,7 @@ The spatial derivative operators are represented via Chebyshev pseudospectral ap ```julia using OrdinaryDiffEq +using OrdinaryDiffEqBDF, OrdinaryDiffEqExponentialRK, OrdinaryDiffEqIMEXMultistep, OrdinaryDiffEqRosenbrock, OrdinaryDiffEqSDIRK using DiffEqDevTools using SciMLOperators using LinearSolve @@ -79,7 +80,7 @@ end; ```julia n = 128 # Number of Chebyshev points xs, prob = burgers(n) -@time sol = solve(prob, Rodas5(autodiff=false), reltol = 1e-12, abstol = 1e-12) +@time sol = solve(prob, Rodas5(autodiff=AutoFiniteDiff()), reltol = 1e-12, abstol = 1e-12) test_sol = TestSolution(sol) # Reference solution for error estimation diff --git a/benchmarks/SimpleHandwrittenPDE/kdv_fdm_wpd.jmd b/benchmarks/SimpleHandwrittenPDE/kdv_fdm_wpd.jmd index 0dac88119..184355a84 100644 --- a/benchmarks/SimpleHandwrittenPDE/kdv_fdm_wpd.jmd +++ b/benchmarks/SimpleHandwrittenPDE/kdv_fdm_wpd.jmd @@ -26,6 +26,7 @@ The spatial derivative operators are represented via finite difference approxima ```julia using OrdinaryDiffEq +using OrdinaryDiffEqBDF, OrdinaryDiffEqExponentialRK, OrdinaryDiffEqFIRK, OrdinaryDiffEqIMEXMultistep, OrdinaryDiffEqSDIRK using DiffEqDevTools using SciMLOperators using LinearSolve @@ -72,7 +73,7 @@ L = 16.0 # Domain length alpha = 5.0 # Time scaling factor xs, prob = kortwrieg_de_vries(N, L, alpha) -@time sol = solve(prob, AutoVern7(RadauIIA5(autodiff=false)); +@time sol = solve(prob, AutoVern7(RadauIIA5(autodiff=AutoFiniteDiff())); dt = 1e-4, abstol = 1e-14, reltol = 1e-14); test_sol = TestSolution(sol) # Reference solution for error estimation diff --git a/benchmarks/SimpleHandwrittenPDE/kdv_spectral_wpd.jmd b/benchmarks/SimpleHandwrittenPDE/kdv_spectral_wpd.jmd index 23dc9b71d..f2e734dfe 100644 --- a/benchmarks/SimpleHandwrittenPDE/kdv_spectral_wpd.jmd +++ b/benchmarks/SimpleHandwrittenPDE/kdv_spectral_wpd.jmd @@ -5,6 +5,7 @@ author: Arjit Seth ```julia using OrdinaryDiffEq +using OrdinaryDiffEqBDF, OrdinaryDiffEqExponentialRK, OrdinaryDiffEqFIRK, OrdinaryDiffEqIMEXMultistep, OrdinaryDiffEqSDIRK using DiffEqDevTools using SciMLOperators using LinearSolve @@ -68,7 +69,7 @@ n = 128 # Number of Chebyshev points alpha = 5.0 # Time scaling factor xs, prob = korteweg_de_vries(n, L, alpha) -@time sol = solve(prob, AutoVern7(RadauIIA5(autodiff=false)); +@time sol = solve(prob, AutoVern7(RadauIIA5(autodiff=AutoFiniteDiff())); dt = 1e-4, reltol = 1e-12, abstol = 1e-12); test_sol = TestSolution(sol) # Reference solution for error estimation diff --git a/benchmarks/SimpleHandwrittenPDE/ks_fdm_wpd.jmd b/benchmarks/SimpleHandwrittenPDE/ks_fdm_wpd.jmd index 433bb2b70..53cf211af 100644 --- a/benchmarks/SimpleHandwrittenPDE/ks_fdm_wpd.jmd +++ b/benchmarks/SimpleHandwrittenPDE/ks_fdm_wpd.jmd @@ -26,6 +26,7 @@ The spatial derivative operators are represented via finite difference approxima ```julia using OrdinaryDiffEq +using OrdinaryDiffEqBDF, OrdinaryDiffEqExponentialRK, OrdinaryDiffEqFIRK, OrdinaryDiffEqIMEXMultistep, OrdinaryDiffEqSDIRK using DiffEqDevTools using SciMLOperators using LinearSolve @@ -72,7 +73,7 @@ N = 128 # Number of grid points L = 16.0 # Domain length alpha = 30.0 # Time scaling factor xs, prob = kuramoto_sivashinsky(N, L, alpha) -@time sol = solve(prob, RadauIIA5(autodiff=false); dt = 1e-4, abstol=1e-14, reltol=1e-14, adaptive=true) +@time sol = solve(prob, RadauIIA5(autodiff=AutoFiniteDiff()); dt = 1e-4, abstol=1e-14, reltol=1e-14, adaptive=true) test_sol = TestSolution(sol); diff --git a/benchmarks/SimpleHandwrittenPDE/ks_spectral_wpd.jmd b/benchmarks/SimpleHandwrittenPDE/ks_spectral_wpd.jmd index 3d6cd0e58..f05f92747 100644 --- a/benchmarks/SimpleHandwrittenPDE/ks_spectral_wpd.jmd +++ b/benchmarks/SimpleHandwrittenPDE/ks_spectral_wpd.jmd @@ -26,6 +26,7 @@ The spatial derivative operators are represented via Fourier pseudospectral appr ```julia using OrdinaryDiffEq +using OrdinaryDiffEqBDF, OrdinaryDiffEqExponentialRK, OrdinaryDiffEqIMEXMultistep, OrdinaryDiffEqRosenbrock, OrdinaryDiffEqSDIRK using DiffEqDevTools using SciMLOperators using LinearSolve @@ -68,7 +69,7 @@ L = 16.0 # Domain length alpha = 10.0 # Time scaling factor xs, prob = kuramoto_sivashinsky(N, L, alpha) -sol = solve(prob, Rodas5(autodiff=false); dt = 1e-4, reltol = 1e-12, abstol = 1e-12) +sol = solve(prob, Rodas5(autodiff=AutoFiniteDiff()); dt = 1e-4, reltol = 1e-12, abstol = 1e-12) test_sol = TestSolution(sol) # Reference solution for error estimation diff --git a/benchmarks/SimpleHandwrittenPDE/nls_fdm_wpd.jmd b/benchmarks/SimpleHandwrittenPDE/nls_fdm_wpd.jmd index 195843bb9..57a37dbd9 100644 --- a/benchmarks/SimpleHandwrittenPDE/nls_fdm_wpd.jmd +++ b/benchmarks/SimpleHandwrittenPDE/nls_fdm_wpd.jmd @@ -30,6 +30,7 @@ The spatial derivative operators are represented via finite difference approxima ```julia using OrdinaryDiffEq +using OrdinaryDiffEqBDF, OrdinaryDiffEqExponentialRK, OrdinaryDiffEqFIRK, OrdinaryDiffEqHighOrderRK, OrdinaryDiffEqIMEXMultistep, OrdinaryDiffEqRosenbrock using DiffEqDevTools using SciMLOperators using LinearSolve @@ -97,7 +98,7 @@ L = 16.0 # Domain half-length alpha = 5.0 # Dispersive coefficient xs, prob = nonlinear_schrodinger(N, L, alpha) -@time sol = solve(prob, AutoVern7(RadauIIA5(autodiff=false)); +@time sol = solve(prob, AutoVern7(RadauIIA5(autodiff=AutoFiniteDiff())); dt = 1e-4, abstol = 1e-14, reltol = 1e-14); test_sol = TestSolution(sol) # Reference solution for error estimation @@ -119,7 +120,7 @@ reltols = 0.1 .^ (2:5) setups = [ Dict(:alg => Rodas5(autodiff=autosparse_ad)), Dict(:alg => Rodas5P(autodiff=autosparse_ad)), - Dict(:alg => Rodas5(autodiff=false)), + Dict(:alg => Rodas5(autodiff=AutoFiniteDiff())), Dict(:alg => Tsit5()), Dict(:alg => Vern7()), ] diff --git a/benchmarks/SimpleHandwrittenPDE/nls_spectral_wpd.jmd b/benchmarks/SimpleHandwrittenPDE/nls_spectral_wpd.jmd index 0bd7277d1..400fcc675 100644 --- a/benchmarks/SimpleHandwrittenPDE/nls_spectral_wpd.jmd +++ b/benchmarks/SimpleHandwrittenPDE/nls_spectral_wpd.jmd @@ -5,6 +5,7 @@ author: Chris Rackauckas ```julia using OrdinaryDiffEq +using OrdinaryDiffEqBDF, OrdinaryDiffEqExponentialRK, OrdinaryDiffEqFIRK, OrdinaryDiffEqHighOrderRK, OrdinaryDiffEqIMEXMultistep using DiffEqDevTools using SciMLOperators using LinearSolve @@ -85,7 +86,7 @@ n = 256 # Number of grid points alpha = 5.0 # Dispersive coefficient xs, prob = nonlinear_schrodinger(n, L, alpha) -@time sol = solve(prob, AutoVern7(RadauIIA5(autodiff=false)); +@time sol = solve(prob, AutoVern7(RadauIIA5(autodiff=AutoFiniteDiff())); dt = 1e-4, reltol = 1e-12, abstol = 1e-12); test_sol = TestSolution(sol) # Reference solution for error estimation diff --git a/benchmarks/StiffBVP/Manifest.toml b/benchmarks/StiffBVP/Manifest.toml index e7ba01ed0..bd29de7c7 100644 --- a/benchmarks/StiffBVP/Manifest.toml +++ b/benchmarks/StiffBVP/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.12.4" +julia_version = "1.11.9" manifest_format = "2.0" -project_hash = "ab5cbd46af4a1af5789a8a47cc807372635d5055" +project_hash = "80158d7a20b6f3f92f0a0063766da711d1fbcdfb" [[deps.ADTypes]] -git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" +git-tree-sha1 = "bbc22a9a08a0ef6460041086d8a7b27940ed4ffd" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.21.0" +version = "1.22.0" weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] [deps.ADTypes.extensions] @@ -20,12 +20,15 @@ deps = ["LinearAlgebra"] git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" version = "1.5.0" -weakdeps = ["ChainRulesCore", "Test"] [deps.AbstractFFTs.extensions] AbstractFFTsChainRulesCoreExt = "ChainRulesCore" AbstractFFTsTestExt = "Test" + [deps.AbstractFFTs.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + [[deps.AbstractTrees]] git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" @@ -57,9 +60,9 @@ version = "0.1.44" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "35ea197a51ce46fcd01c4a44befce0578a1aaeca" +git-tree-sha1 = "0761717147821d696c9470a7a86364b2fbd22fd8" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.5.0" +version = "4.5.2" weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] @@ -95,9 +98,9 @@ version = "1.1.2" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "78b3a7a536b4b0a747a0f296ea77091ca0a9f9a3" +git-tree-sha1 = "54f895554d05c83e3dd59f6a396671dae8999573" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.23.0" +version = "7.24.0" [deps.ArrayInterface.extensions] ArrayInterfaceAMDGPUExt = "AMDGPU" @@ -185,22 +188,16 @@ uuid = "18cc8868-cbac-4acf-b575-c8ff214dc66f" version = "1.3.2" [[deps.BenchmarkTools]] -deps = ["Compat", "JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"] -git-tree-sha1 = "7fecfb1123b8d0232218e2da0c213004ff15358d" +deps = ["Compat", "JSON", "Logging", "PrecompileTools", "Printf", "Profile", "Statistics", "UUIDs"] +git-tree-sha1 = "9670d3febc2b6da60a0ae57846ba74670290653f" uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" -version = "1.6.3" - -[[deps.BitTwiddlingConvenienceFunctions]] -deps = ["Static"] -git-tree-sha1 = "f21cfd4950cb9f0587d5067e69405ad2acd27b87" -uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" -version = "0.1.6" +version = "1.8.0" [[deps.BoundaryValueDiffEq]] deps = ["ADTypes", "BoundaryValueDiffEqAscher", "BoundaryValueDiffEqCore", "BoundaryValueDiffEqFIRK", "BoundaryValueDiffEqMIRK", "BoundaryValueDiffEqMIRKN", "BoundaryValueDiffEqShooting", "DiffEqBase", "FastClosures", "ForwardDiff", "LinearAlgebra", "OrdinaryDiffEqTsit5", "Reexport", "SciMLBase"] -git-tree-sha1 = "601b16cb493a593e2a5c459fdcbf40c6834d0354" +git-tree-sha1 = "d2c9cda8321a1bb1e13b1c6694792d053cae0d59" uuid = "764a87c0-6b3e-53db-9096-fe964310641d" -version = "5.20.0" +version = "5.23.0" weakdeps = ["ODEInterface"] [deps.BoundaryValueDiffEq.extensions] @@ -208,45 +205,45 @@ weakdeps = ["ODEInterface"] [[deps.BoundaryValueDiffEqAscher]] deps = ["ADTypes", "AlmostBlockDiagonals", "BoundaryValueDiffEqCore", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "ForwardDiff", "LinearAlgebra", "PreallocationTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "Setfield"] -git-tree-sha1 = "5d344cd499ea5cd44a33b4628ddb468b43da17e2" +git-tree-sha1 = "76710fe77065e0a29f47f91cd8f8038dd6a8a4cc" uuid = "7227322d-7511-4e07-9247-ad6ff830280e" -version = "1.11.0" +version = "1.15.0" [[deps.BoundaryValueDiffEqCore]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "ForwardDiff", "Integrals", "LineSearch", "LinearAlgebra", "Logging", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "OptimizationBase", "PreallocationTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLStructures", "Setfield", "SparseArrays", "SparseConnectivityTracer", "SparseMatrixColorings"] -git-tree-sha1 = "3aa39e8b4304acbbb8792077bc7472f4df8d2200" +deps = ["ADTypes", "Adapt", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "ForwardDiff", "Integrals", "LineSearch", "LinearAlgebra", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "OptimizationBase", "PreallocationTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLStructures", "Setfield", "SparseArrays", "SparseConnectivityTracer", "SparseMatrixColorings"] +git-tree-sha1 = "776af861ee6613f70eb656f04683e624bc391d83" uuid = "56b672f2-a5fe-4263-ab2d-da677488eb3a" -version = "2.1.0" +version = "2.6.0" [[deps.BoundaryValueDiffEqFIRK]] deps = ["ADTypes", "ArrayInterface", "BandedMatrices", "BoundaryValueDiffEqCore", "ConcreteStructs", "DifferentiationInterface", "FastAlmostBandedMatrices", "FastClosures", "ForwardDiff", "LinearAlgebra", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLStructures", "Setfield", "SparseArrays", "StaticArrays"] -git-tree-sha1 = "66c6f917a0d9e5495a6255329e3aef9036705261" +git-tree-sha1 = "b3659387899568593bd67ae36eaaae4353ce41fa" uuid = "85d9eb09-370e-4000-bb32-543851f73618" -version = "1.12.0" +version = "1.17.0" [[deps.BoundaryValueDiffEqMIRK]] deps = ["ADTypes", "ArrayInterface", "BandedMatrices", "BoundaryValueDiffEqCore", "ConcreteStructs", "DifferentiationInterface", "FastAlmostBandedMatrices", "FastClosures", "ForwardDiff", "LinearAlgebra", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLStructures", "Setfield", "SparseArrays"] -git-tree-sha1 = "24809da4777dd3a1fd168c6a18114fd76f6df439" +git-tree-sha1 = "4234288ab0b141be4551dcf0d1e2e526051c3288" uuid = "1a22d4ce-7765-49ea-b6f2-13c8438986a6" -version = "1.12.0" +version = "1.17.0" [[deps.BoundaryValueDiffEqMIRKN]] deps = ["ADTypes", "ArrayInterface", "BandedMatrices", "BoundaryValueDiffEqCore", "ConcreteStructs", "DifferentiationInterface", "FastAlmostBandedMatrices", "FastClosures", "ForwardDiff", "LinearAlgebra", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Setfield", "SparseArrays"] -git-tree-sha1 = "2e36e439a8e59f54a1976847505abb74efd5cdbb" +git-tree-sha1 = "49fb590f976f5c93dd2b574b636ab921745905f6" uuid = "9255f1d6-53bf-473e-b6bd-23f1ff009da4" -version = "1.11.0" +version = "1.16.0" [[deps.BoundaryValueDiffEqShooting]] deps = ["ADTypes", "ArrayInterface", "BandedMatrices", "BoundaryValueDiffEqCore", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "ForwardDiff", "LinearAlgebra", "OrdinaryDiffEqTsit5", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Setfield", "SparseArrays"] -git-tree-sha1 = "bc4d1654c6ea811a681fd1e72647c7977ea1f362" +git-tree-sha1 = "ca7d90cc2003a9bf0e502745f4e8f9a28727da33" uuid = "ed55bfe0-3725-4db6-871e-a1dc9f42a757" -version = "1.12.0" +version = "1.17.0" [[deps.BracketingNonlinearSolve]] deps = ["CommonSolve", "ConcreteStructs", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "4999dff8efd76814f6662519b985aeda975a1924" +git-tree-sha1 = "7ad7171d693ae5552ac43862e7f6b61df4471c2b" uuid = "70df07ce-3d50-431d-a3e7-ca6ddb60ac1e" -version = "1.11.0" +version = "1.12.1" weakdeps = ["ChainRulesCore", "ForwardDiff"] [deps.BracketingNonlinearSolve.extensions] @@ -264,12 +261,6 @@ git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" version = "0.5.0" -[[deps.CPUSummary]] -deps = ["CpuId", "IfElse", "PrecompileTools", "Preferences", "Static"] -git-tree-sha1 = "f3a21d7fc84ba618a779d1ed2fcca2e682865bab" -uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" -version = "0.2.7" - [[deps.CRC32c]] uuid = "8bf52ea8-c179-5cab-976a-9e18b702a9bc" version = "1.11.0" @@ -294,31 +285,31 @@ version = "1.1.1" [[deps.CairoMakie]] deps = ["CRC32c", "Cairo", "Cairo_jll", "Colors", "FileIO", "FreeType", "GeometryBasics", "LinearAlgebra", "Makie", "PrecompileTools"] -git-tree-sha1 = "fa072933899aae6dc61dde934febed8254e66c6a" +git-tree-sha1 = "bf2d9cd1ec0c4ce3e0b5aaad192074969413f626" uuid = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0" -version = "0.15.9" +version = "0.15.10" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d0efe2c6fdcdaa1c161d206aa8b933788397ec71" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.5+1" +version = "1.18.6+0" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" +git-tree-sha1 = "12177ad6b3cad7fd50c8b3825ce24a99ad61c18f" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.26.0" +version = "1.26.1" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] ChainRulesCoreSparseArraysExt = "SparseArrays" -[[deps.CloseOpenIntervals]] -deps = ["Static", "StaticArrayInterface"] -git-tree-sha1 = "05ba0d07cd4fd8b7a39541e31a7b0254704ea581" -uuid = "fb6a15b2-703c-40df-9091-08a04967cfa9" -version = "0.1.13" +[[deps.CodecZstd]] +deps = ["TranscodingStreams", "Zstd_jll"] +git-tree-sha1 = "da54a6cd93c54950c15adf1d336cfd7d71f51a56" +uuid = "6b39b394-51ab-5f42-8807-6242bab2b4c2" +version = "0.8.7" [[deps.ColorBrewer]] deps = ["Colors", "JSON"] @@ -374,11 +365,6 @@ git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.1" -[[deps.CommonWorldInvalidations]] -git-tree-sha1 = "ae52d1c52048455e85a387fbee9be553ec2b68d0" -uuid = "f70d9fcc-98c5-4d4a-abd7-e4cdeebd8ca8" -version = "1.0.0" - [[deps.Compat]] deps = ["TOML", "UUIDs"] git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" @@ -392,7 +378,7 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.3.0+1" +version = "1.1.1+0" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -436,11 +422,17 @@ git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" version = "0.6.3" -[[deps.CpuId]] -deps = ["Markdown"] -git-tree-sha1 = "fcbb72b032692610bfbdb15018ac16a36cf2e406" -uuid = "adafc99b-e345-5852-983c-f28acb93d879" -version = "0.3.1" +[[deps.CoreMath]] +deps = ["CoreMath_jll"] +git-tree-sha1 = "8c0480f92b1b1796239156a1b9b1bfb1b39499b4" +uuid = "b7a15901-be09-4a0e-87d2-2e66b0e09b5a" +version = "0.1.0" + +[[deps.CoreMath_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "a692a4c1dc59a4b8bc0b6403876eb3250fde2bc3" +uuid = "a38c48d9-6df1-5ac9-9223-b6ada3b5572b" +version = "0.1.0+0" [[deps.DataAPI]] git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" @@ -449,9 +441,9 @@ version = "1.16.0" [[deps.DataStructures]] deps = ["OrderedCollections"] -git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" +git-tree-sha1 = "e86f4a2805f7f19bec5129bc9150c38208e5dc23" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.19.3" +version = "0.19.4" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -476,10 +468,10 @@ uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" version = "1.9.1" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "96e0d3006aac4a322691de81f0baedd38b62a0c4" +deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "2d7ca58e6ce2d1f7a435773d73d111741e283070" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.211.0" +version = "7.1.0" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" @@ -519,16 +511,16 @@ version = "6.211.0" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.DiffEqDevTools]] -deps = ["BracketingNonlinearSolve", "CommonSolve", "DiffEqBase", "DiffEqNoiseProcess", "Distributed", "ExplicitImports", "LinearAlgebra", "Logging", "RecipesBase", "RecursiveArrayTools", "RootedTrees", "SciMLBase", "Statistics", "StructArrays"] -git-tree-sha1 = "85b69022536add40c3ef422f6f2224cd59f65076" +deps = ["DiffEqBase", "DiffEqNoiseProcess", "Distributed", "LinearAlgebra", "Logging", "NLsolve", "RecipesBase", "RecursiveArrayTools", "RootedTrees", "SciMLBase", "Statistics", "StructArrays"] +git-tree-sha1 = "cc290a2fdad4d332ba6a88953eaf5800687ccd49" uuid = "f3b72e0c-5b89-59e1-b016-84e28bfd966d" -version = "2.51.0" +version = "3.0.0" [[deps.DiffEqNoiseProcess]] deps = ["CommonSolve", "DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "PoissonRandom", "QuadGK", "Random", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "b879ca516034469f28becdf01f85f56b45f518b9" +git-tree-sha1 = "5b5fe6eb9e994ff0de4e84fe149b03c706fd6403" uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" -version = "5.27.0" +version = "5.31.0" [deps.DiffEqNoiseProcess.extensions] DiffEqNoiseProcessOptimExt = "Optim" @@ -552,9 +544,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +git-tree-sha1 = "d0250552e42bf7cc36479fd38a6e30004c9e8c2b" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.7.16" +version = "0.7.17" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -564,7 +556,7 @@ version = "0.7.16" DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] - DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGPUArraysCoreExt = ["GPUArraysCore", "Adapt"] DifferentiationInterfaceGTPSAExt = "GTPSA" DifferentiationInterfaceMooncakeExt = "Mooncake" DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] @@ -578,6 +570,7 @@ version = "0.7.16" DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] [deps.DifferentiationInterface.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" @@ -600,6 +593,17 @@ version = "0.7.16" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" +[[deps.Distances]] +deps = ["LinearAlgebra", "Statistics", "StatsAPI"] +git-tree-sha1 = "c7e3a542b999843086e2f29dac96a618c105be1d" +uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" +version = "0.10.12" +weakdeps = ["ChainRulesCore", "SparseArrays"] + + [deps.Distances.extensions] + DistancesChainRulesCoreExt = "ChainRulesCore" + DistancesSparseArraysExt = "SparseArrays" + [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" @@ -607,9 +611,9 @@ version = "1.11.0" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" +git-tree-sha1 = "e421c1938fafab0165b04dc1a9dbe2a26272952c" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.123" +version = "0.25.125" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -629,7 +633,7 @@ version = "0.9.5" [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" -version = "1.7.0" +version = "1.6.0" [[deps.EarCut_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -643,9 +647,9 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.7" [[deps.EnzymeCore]] -git-tree-sha1 = "990991b8aa76d17693a98e3a915ac7aa49f08d1a" +git-tree-sha1 = "c6ee69ee502060982d12dbaaf3d8fcb4e835a0d1" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.8.18" +version = "0.8.20" weakdeps = ["Adapt", "ChainRulesCore"] [deps.EnzymeCore.extensions] @@ -660,26 +664,15 @@ version = "2.2.9" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "27af30de8b5445644e8ffe3bcb0d72049c089cf1" +git-tree-sha1 = "8f05e9a2e7c2e3eb524102bb2926c5743c07fbe1" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.7.3+0" - -[[deps.ExplicitImports]] -deps = ["Markdown", "Pkg", "PrecompileTools", "TOML", "Test"] -git-tree-sha1 = "a8b6c26bf0ea9f8c4bad71e109a5fa64f34be392" -uuid = "7d51a73a-1435-4ff3-83d9-f097790105c7" -version = "1.15.0" +version = "2.8.0+0" [[deps.ExprTools]] git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" version = "0.1.10" -[[deps.ExproniconLite]] -git-tree-sha1 = "c13f0b150373771b0fdc1713c97860f8df12e6c2" -uuid = "55351af7-c7e9-48d6-89ff-24e801d99491" -version = "0.10.14" - [[deps.Extents]] git-tree-sha1 = "b309b36a9e02fe7be71270dd8c0fd873625332b4" uuid = "411431e0-e8b7-467b-b5e0-f676ba4f2910" @@ -687,9 +680,9 @@ version = "0.1.6" [[deps.FFMPEG_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libva_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "66381d7059b5f3f6162f28831854008040a4e905" +git-tree-sha1 = "cac41ca6b2d399adfc95e51240566f8a60a80806" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "8.0.1+1" +version = "8.1.0+0" [[deps.FFTA]] deps = ["AbstractFFTs", "DocStringExtensions", "LinearAlgebra", "MuladdMacro", "Primes", "Random", "Reexport"] @@ -704,10 +697,18 @@ uuid = "9d29842c-ecb8-4973-b1e9-a27b1157504e" version = "0.1.6" [[deps.FastBroadcast]] -deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "ab1b34570bcdf272899062e1a56285a53ecaae08" +deps = ["ArrayInterface", "LinearAlgebra"] +git-tree-sha1 = "7feeed2c9a7fa272189a5561bebf0c4ccaedb6ec" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.3.5" +version = "1.3.2" + + [deps.FastBroadcast.extensions] + FastBroadcastPolyesterExt = "Polyester" + FastBroadcastStaticExt = "Static" + + [deps.FastBroadcast.weakdeps] + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" + Static = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" @@ -739,9 +740,9 @@ version = "1.3.1" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "6522cfb3b8fe97bec632252263057996cbd3de20" +git-tree-sha1 = "8e9c059d6857607253e837730dbf780b6b151acd" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.18.0" +version = "1.19.0" [deps.FileIO.extensions] HTTPExt = "HTTP" @@ -770,12 +771,15 @@ deps = ["Compat", "Dates"] git-tree-sha1 = "3bab2c5aa25e7840a4b065805c0cdfc01f3068d2" uuid = "48062228-2e41-5def-b9a4-89aafe57970f" version = "0.9.24" -weakdeps = ["Mmap", "Test"] [deps.FilePathsBase.extensions] FilePathsBaseMmapExt = "Mmap" FilePathsBaseTestExt = "Test" + [deps.FilePathsBase.weakdeps] + Mmap = "a63ad114-7e13-5084-954f-fe012c677804" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" version = "1.11.0" @@ -795,9 +799,9 @@ weakdeps = ["PDMats", "SparseArrays", "StaticArrays", "Statistics"] [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "9340ca07ca27093ff68418b7558ca37b05f8aeb1" +git-tree-sha1 = "f7017a4f337f8df189fcce98e32b67a1298a2115" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.29.0" +version = "2.31.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -868,10 +872,19 @@ uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" version = "1.1.3" [[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +deps = ["FunctionWrappers", "PrecompileTools", "TruncatedStacktraces"] +git-tree-sha1 = "c1b0c3a166a2a393257aa888787ca817532e14ce" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" +version = "1.8.0" + + [deps.FunctionWrappersWrappers.extensions] + FunctionWrappersWrappersEnzymeExt = ["Enzyme", "EnzymeCore"] + FunctionWrappersWrappersMooncakeExt = "Mooncake" + + [deps.FunctionWrappersWrappers.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" [[deps.Future]] deps = ["Random"] @@ -928,9 +941,9 @@ version = "3.7.0+0" [[deps.Git_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "dc34a3e3d96b4ed305b641e626dc14c12b7824b8" +git-tree-sha1 = "0dd4cfb426924210c8f42742751cbde74b27bfa3" uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb" -version = "2.53.0+0" +version = "2.54.0+0" [[deps.Glib_jll]] deps = ["Artifacts", "GettextRuntime_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] @@ -999,11 +1012,6 @@ version = "1.34.4" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" Revise = "295af30f-e4ad-537b-8983-00126c2a3abe" -[[deps.IfElse]] -git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" -uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" -version = "0.1.1" - [[deps.ImageAxes]] deps = ["AxisArrays", "ImageBase", "ImageCore", "Reexport", "SimpleTraits"] git-tree-sha1 = "e12629406c6c4442539436581041d372d69c55ba" @@ -1057,9 +1065,9 @@ version = "0.1.3" [[deps.Integrals]] deps = ["ArrayInterface", "CommonSolve", "HCubature", "LinearAlgebra", "MonteCarloIntegration", "QuadGK", "Random", "Reexport", "SciMLBase", "SciMLLogging"] -git-tree-sha1 = "e89de2c83d4c16d75570d98ca5202cf907f25947" +git-tree-sha1 = "a93089c3454ab25f08f2c8c7eb81e7bba4343c12" uuid = "de52edbc-65ea-441a-8357-d3a637375a31" -version = "5.1.0" +version = "5.4.0" [deps.Integrals.extensions] IntegralsArblibExt = "Arblib" @@ -1067,6 +1075,7 @@ version = "5.1.0" IntegralsCubatureExt = "Cubature" IntegralsDifferentiationInterfaceExt = ["ADTypes", "DifferentiationInterface", "ChainRulesCore"] IntegralsFastGaussQuadratureExt = "FastGaussQuadrature" + IntegralsFastTanhSinhQuadratureExt = "FastTanhSinhQuadrature" IntegralsForwardDiffExt = "ForwardDiff" IntegralsHAdaptiveIntegrationExt = "HAdaptiveIntegration" IntegralsMCIntegrationExt = "MCIntegration" @@ -1081,6 +1090,7 @@ version = "5.1.0" Cubature = "667455a9-e2ce-5579-9412-b964f529a492" DifferentiationInterface = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" FastGaussQuadrature = "442a2c76-b920-505d-bb47-c5924d526838" + FastTanhSinhQuadrature = "b650e0df-f744-4436-b963-b44034668c57" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" HAdaptiveIntegration = "eaa5ad34-b243-48e9-b09c-54bc0655cecf" MCIntegration = "ea1e2de9-7db7-4b42-91ee-0cd1bf6df167" @@ -1110,16 +1120,17 @@ weakdeps = ["ForwardDiff", "Unitful"] InterpolationsUnitfulExt = "Unitful" [[deps.IntervalArithmetic]] -deps = ["CRlibm", "MacroTools", "OpenBLASConsistentFPCSR_jll", "Printf", "Random", "RoundingEmulator"] -git-tree-sha1 = "2cce1fed119ca7b6cc230c4a3b85202478af7924" +deps = ["CRlibm", "CoreMath", "MacroTools", "OpenBLASConsistentFPCSR_jll", "Printf", "Random", "RoundingEmulator"] +git-tree-sha1 = "3e6273749a2df3a5c9067657510ad01ba5039a92" uuid = "d1acc4aa-44c8-5952-acd4-ba5d80a2a253" -version = "1.0.3" +version = "1.0.8" [deps.IntervalArithmetic.extensions] IntervalArithmeticArblibExt = "Arblib" IntervalArithmeticDiffRulesExt = "DiffRules" IntervalArithmeticForwardDiffExt = "ForwardDiff" IntervalArithmeticIntervalSetsExt = "IntervalSets" + IntervalArithmeticIrrationalConstantsExt = "IrrationalConstants" IntervalArithmeticLinearAlgebraExt = "LinearAlgebra" IntervalArithmeticRecipesBaseExt = "RecipesBase" IntervalArithmeticSparseArraysExt = "SparseArrays" @@ -1129,14 +1140,15 @@ version = "1.0.3" DiffRules = "b552c78f-8df3-52c6-915a-8e097449b14b" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + IrrationalConstants = "92d709cd-6900-40b7-9082-c6be49f344b6" LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[deps.IntervalSets]] -git-tree-sha1 = "d966f85b3b7a8e49d034d27a189e9a4874b4391a" +git-tree-sha1 = "79d6bd28c8d9bccc2229784f1bd637689b256377" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.13" +version = "0.7.14" weakdeps = ["Random", "RecipesBase", "Statistics"] [deps.IntervalSets.extensions] @@ -1148,12 +1160,15 @@ weakdeps = ["Random", "RecipesBase", "Statistics"] git-tree-sha1 = "a779299d77cd080bf77b97535acecd73e1c5e5cb" uuid = "3587e190-3f89-42d0-90ee-14403ec27112" version = "0.1.17" -weakdeps = ["Dates", "Test"] [deps.InverseFunctions.extensions] InverseFunctionsDatesExt = "Dates" InverseFunctionsTestExt = "Test" + [deps.InverseFunctions.weakdeps] + Dates = "ade2ca70-3891-5945-98fb-dc099432e06a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + [[deps.IrrationalConstants]] git-tree-sha1 = "b2d91fe939cae05960e760110b328288867b5758" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" @@ -1187,12 +1202,6 @@ git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.4" -[[deps.Jieko]] -deps = ["ExproniconLite"] -git-tree-sha1 = "2f05ed29618da60c06a87e9c033982d4f71d0b6c" -uuid = "ae98c720-c025-4a4a-838c-29b094483192" -version = "0.2.1" - [[deps.JpegTurbo]] deps = ["CEnum", "FileIO", "ImageCore", "JpegTurbo_jll", "TOML"] git-tree-sha1 = "9496de8fb52c224a2e3f9ff403947674517317d9" @@ -1201,14 +1210,9 @@ version = "0.1.6" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "b6893345fd6658c8e475d40155789f4860ac3b21" +git-tree-sha1 = "c0c9b76f3520863909825cbecdef58cd63de705a" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.1.4+0" - -[[deps.JuliaSyntaxHighlighting]] -deps = ["StyledStrings"] -uuid = "ac6e5ff7-fb65-4e79-a425-ec3bc9c03011" -version = "1.12.0" +version = "3.1.5+0" [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTA", "Interpolations", "StatsBase"] @@ -1230,9 +1234,9 @@ version = "3.100.3+0" [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "aaafe88dccbd957a8d82f7d05be9b69172e0cee3" +git-tree-sha1 = "17b94ecafcfa45e8360a4fc9ca6b583b049e4e37" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "4.0.1+0" +version = "4.1.0+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1240,12 +1244,6 @@ git-tree-sha1 = "eb62a3deb62fc6d8822c0c4bef73e4412419c5d8" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" version = "18.1.8+0" -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "1c602b1127f4751facb671441ca72715cc95938a" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.3+0" - [[deps.LaTeXStrings]] git-tree-sha1 = "dda21b8cbd6a6c40d9d02a73230f9d70fed6918c" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" @@ -1275,17 +1273,11 @@ git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" version = "0.0.1" -[[deps.LayoutPointers]] -deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "a9eaadb366f5493a5654e843864c13d8b107548c" -uuid = "10f19ff3-798f-405d-979b-55457f8fc047" -version = "0.1.17" - [[deps.LazyArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "41d433e5854d7a67e8ab2b04962a713fcbcffcf1" +git-tree-sha1 = "33b5d8fafb7ab69eca907b359d00d0107feb2cbf" uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "2.9.5" +version = "2.9.7" [deps.LazyArrays.extensions] LazyArraysBandedMatricesExt = "BandedMatrices" @@ -1315,24 +1307,24 @@ uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" version = "0.6.4" [[deps.LibCURL_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "OpenSSL_jll", "Zlib_jll", "nghttp2_jll"] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.15.0+0" +version = "8.6.0+0" [[deps.LibGit2]] -deps = ["LibGit2_jll", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" version = "1.11.0" [[deps.LibGit2_jll]] -deps = ["Artifacts", "LibSSH2_jll", "Libdl", "OpenSSL_jll"] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.9.0+0" +version = "1.7.2+0" [[deps.LibSSH2_jll]] -deps = ["Artifacts", "Libdl", "OpenSSL_jll"] +deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" -version = "1.11.3+1" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" @@ -1358,9 +1350,9 @@ version = "1.18.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "97bbca976196f2a1eb9607131cb108c69ec3f8a6" +git-tree-sha1 = "cc3ad4faf30015a3e8094c9b5b7f19e85bdf2386" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] @@ -1370,32 +1362,36 @@ version = "4.7.2+0" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d0205286d9eceadc518742860bf23f703779a3d6" +git-tree-sha1 = "d620582b1f0cbe2c72dd1d5bd195a9ce73370ab1" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.LineSearch]] deps = ["ADTypes", "CommonSolve", "ConcreteStructs", "FastClosures", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "SciMLBase", "SciMLJacobianOperators", "StaticArraysCore"] -git-tree-sha1 = "9f7253c0574b4b585c8909232adb890930da980a" +git-tree-sha1 = "fd58a77c92e7c8f1db25c9839127d52943a49349" uuid = "87fe0de2-c867-4266-b59a-2f0a94fc965b" -version = "0.1.6" +version = "0.1.9" +weakdeps = ["LineSearches"] [deps.LineSearch.extensions] LineSearchLineSearchesExt = "LineSearches" - [deps.LineSearch.weakdeps] - LineSearches = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" +[[deps.LineSearches]] +deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Printf"] +git-tree-sha1 = "9ea3422d03222c6de679934d1c08f0a99405aa03" +uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" +version = "7.5.1" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" -version = "1.12.0" +version = "1.11.0" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "adbd4c44ef9361c67dd5dc192b66ac12b9e1be85" +deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] +git-tree-sha1 = "42b5cb44317e89ef75dd841c9c8eba9045bf9ff0" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "3.68.0" +version = "3.75.0" [deps.LinearSolve.extensions] LinearSolveAMDGPUExt = "AMDGPU" @@ -1406,7 +1402,9 @@ version = "3.68.0" LinearSolveCUDAExt = "CUDA" LinearSolveCUDSSExt = "CUDSS" LinearSolveCUSOLVERRFExt = ["CUSOLVERRF", "SparseArrays"] + LinearSolveChainRulesCoreExt = "ChainRulesCore" LinearSolveCliqueTreesExt = ["CliqueTrees", "SparseArrays"] + LinearSolveElementalExt = "Elemental" LinearSolveEnzymeExt = ["EnzymeCore", "SparseArrays"] LinearSolveFastAlmostBandedMatricesExt = "FastAlmostBandedMatrices" LinearSolveFastLapackInterfaceExt = "FastLapackInterface" @@ -1418,7 +1416,9 @@ version = "3.68.0" LinearSolveKrylovKitExt = "KrylovKit" LinearSolveMetalExt = "Metal" LinearSolveMooncakeExt = "Mooncake" + LinearSolvePETScCSRExt = ["PETSc", "SparseArrays", "SparseMatricesCSR"] LinearSolvePETScExt = ["PETSc", "SparseArrays"] + LinearSolvePETScMPIExt = ["PETSc", "PartitionedArrays", "SparseArrays", "SparseMatricesCSR"] LinearSolveParUExt = ["ParU_jll", "SparseArrays"] LinearSolvePardisoExt = ["Pardiso", "SparseArrays"] LinearSolveRecursiveFactorizationExt = "RecursiveFactorization" @@ -1433,7 +1433,9 @@ version = "3.68.0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" CUSOLVERRF = "a8cc9031-bad2-4722-94f5-40deabb4245c" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" + Elemental = "902c3f28-d1ec-5e7e-8399-a24c3845ee38" EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" FastLapackInterface = "29a986be-02c6-4525-aec4-84b980013641" @@ -1449,8 +1451,10 @@ version = "3.68.0" PETSc = "ace2c81b-2b5f-4b1e-a30d-d662738edfe0" ParU_jll = "9e0b026c-e8ce-559c-a2c4-6a3d5c955bc9" Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" + PartitionedArrays = "5a9dfac6-5c52-46f7-8278-5e2210713be9" RecursiveFactorization = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseMatricesCSR = "a0a7dd2c-ebf4-11e9-1f05-cf50bc540ca1" Sparspak = "e56a9233-b9d6-4f03-8d0f-1825330902ac" blis_jll = "6136c539-28a5-5bf0-87cc-b183200dce32" @@ -1493,9 +1497,9 @@ version = "0.5.16" [[deps.Makie]] deps = ["Animations", "Base64", "CRC32c", "ColorBrewer", "ColorSchemes", "ColorTypes", "Colors", "ComputePipeline", "Contour", "Dates", "DelaunayTriangulation", "Distributions", "DocStringExtensions", "Downloads", "FFMPEG_jll", "FileIO", "FilePaths", "FixedPointNumbers", "Format", "FreeType", "FreeTypeAbstraction", "GeometryBasics", "GridLayoutBase", "ImageBase", "ImageIO", "InteractiveUtils", "Interpolations", "IntervalSets", "InverseFunctions", "Isoband", "KernelDensity", "LaTeXStrings", "LinearAlgebra", "MacroTools", "Markdown", "MathTeXEngine", "Observables", "OffsetArrays", "PNGFiles", "Packing", "Pkg", "PlotUtils", "PolygonOps", "PrecompileTools", "Printf", "REPL", "Random", "RelocatableFolders", "Scratch", "ShaderAbstractions", "Showoff", "SignedDistanceFields", "SparseArrays", "Statistics", "StatsBase", "StatsFuns", "StructArrays", "TriplotBase", "UnicodeFun", "Unitful"] -git-tree-sha1 = "68af66ec16af8b152309310251ecb4fbfe39869f" +git-tree-sha1 = "0708c6a1f3cb18ba6482c4174058084c8d6deaf4" uuid = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" -version = "0.24.9" +version = "0.24.10" [deps.Makie.extensions] MakieDynamicQuantitiesExt = "DynamicQuantities" @@ -1503,18 +1507,13 @@ version = "0.24.9" [deps.Makie.weakdeps] DynamicQuantities = "06fc5a27-2a28-4c7c-a15d-362465fb6821" -[[deps.ManualMemory]] -git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" -uuid = "d125e4d3-2237-4719-b19c-fa641b8a4667" -version = "0.1.8" - [[deps.MappedArrays]] git-tree-sha1 = "0ee4497a4e80dbd29c058fcee6493f5219556f40" uuid = "dbb5928d-eab1-5f90-85c2-b9b0edb7c900" version = "0.4.3" [[deps.Markdown]] -deps = ["Base64", "JuliaSyntaxHighlighting", "StyledStrings"] +deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" version = "1.11.0" @@ -1544,6 +1543,11 @@ weakdeps = ["SparseArrays"] [deps.MaybeInplace.extensions] MaybeInplaceSparseArraysExt = "SparseArrays" +[[deps.MbedTLS_jll]] +deps = ["Artifacts", "Libdl"] +uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" +version = "2.28.6+0" + [[deps.Missings]] deps = ["DataAPI"] git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" @@ -1566,15 +1570,9 @@ git-tree-sha1 = "7b86a5d4d70a9f5cdf2dacb3cbe6d251d1a61dbe" uuid = "e94cdb99-869f-56ef-bcf0-1ae2bcbe0389" version = "0.3.4" -[[deps.Moshi]] -deps = ["ExproniconLite", "Jieko"] -git-tree-sha1 = "53f817d3e84537d84545e0ad749e483412dd6b2a" -uuid = "2e0e35c7-a2e4-4343-998d-7ef72827ed2d" -version = "0.3.7" - [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2025.11.4" +version = "2023.12.12" [[deps.MuladdMacro]] git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" @@ -1587,6 +1585,18 @@ git-tree-sha1 = "3cbd5dda543bc59f2e482607ccf84b633724fc32" uuid = "ffc61752-8dc7-55ee-8c37-f3e9cdd09e70" version = "1.0.21" +[[deps.NLSolversBase]] +deps = ["ADTypes", "DifferentiationInterface", "Distributed", "FiniteDiff", "ForwardDiff"] +git-tree-sha1 = "25a6638571a902ecfb1ae2a18fc1575f86b1d4df" +uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" +version = "7.10.0" + +[[deps.NLsolve]] +deps = ["Distances", "LineSearches", "LinearAlgebra", "NLSolversBase", "Printf", "Reexport"] +git-tree-sha1 = "019f12e9a1a7880459d0173c182e6a99365d7ac1" +uuid = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" +version = "4.5.1" + [[deps.NaNMath]] deps = ["OpenLibm_jll"] git-tree-sha1 = "9b8215b1ee9e78a293f99797cd31375471b2bcae" @@ -1601,13 +1611,13 @@ version = "1.1.1" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" -version = "1.3.0" +version = "1.2.0" [[deps.NonlinearSolveBase]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "LinearAlgebra", "LogExpFunctions", "Markdown", "MaybeInplace", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "28ddfd7d136564c5b2a09d28759feccc2005dbea" +deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "LogExpFunctions", "Markdown", "MaybeInplace", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] +git-tree-sha1 = "a19a5df29ef2b197499fc631fa1a59385ae15262" uuid = "be0214bd-f91f-a760-ac4e-3421ce2b2da0" -version = "2.16.0" +version = "2.25.0" [deps.NonlinearSolveBase.extensions] NonlinearSolveBaseBandedMatricesExt = "BandedMatrices" @@ -1637,9 +1647,9 @@ version = "2.16.0" [[deps.NonlinearSolveFirstOrder]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConcreteStructs", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLJacobianOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "eea7cbe389b168c77df7ff779fb7277019c685c8" +git-tree-sha1 = "ce68820a4f421fb5bee7ec4dcf875aff33886bfb" uuid = "5959db7a-ea39-4486-b5fe-2dd0bf03d60d" -version = "2.0.0" +version = "2.1.1" [[deps.ODEInterface]] deps = ["Dates", "Libdl", "LinearAlgebra", "Markdown", "ODEInterface_jll", "Unicode"] @@ -1675,14 +1685,14 @@ version = "1.3.6+0" [[deps.OpenBLASConsistentFPCSR_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "f2b3b9e52a5eb6a3434c8cca67ad2dde011194f4" +git-tree-sha1 = "3287ec88df50429a934ebc6cf14606215e27b987" uuid = "6cdc7f73-28fd-5e50-80fb-958a8875b1af" -version = "0.3.30+0" +version = "0.3.33+0" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.29+0" +version = "0.3.27+1" [[deps.OpenEXR]] deps = ["Colors", "FileIO", "OpenEXR_jll"] @@ -1692,25 +1702,26 @@ version = "0.3.3" [[deps.OpenEXR_jll]] deps = ["Artifacts", "Imath_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "df9b7c88c2e7a2e77146223c526bf9e236d5f450" +git-tree-sha1 = "9ac7c730c53b3b5d9a73fb900ac4b4fc263774db" uuid = "18a262bb-aa17-5467-a713-aee519bc75cb" -version = "3.4.4+0" +version = "3.4.9+0" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" -version = "0.8.7+0" +version = "0.8.5+0" [[deps.OpenSSH_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "OpenSSL_jll", "Zlib_jll"] -git-tree-sha1 = "301412a644646fdc0ad67d0a87487466b491e53d" +git-tree-sha1 = "57baa4b81a24c2910afbb6d853aa0685e4312bf7" uuid = "9bd350c2-7e96-507f-8002-3f2e150b4e1b" -version = "10.2.1+0" +version = "10.3.1+0" [[deps.OpenSSL_jll]] -deps = ["Artifacts", "Libdl"] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "2ac022577e5eac7da040de17776d51bb770cd895" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.5.4+0" +version = "3.5.6+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -1720,9 +1731,9 @@ version = "0.5.6+0" [[deps.OptimizationBase]] deps = ["ADTypes", "ArrayInterface", "DifferentiationInterface", "DocStringExtensions", "FastClosures", "LinearAlgebra", "PDMats", "PrecompileTools", "Reexport", "SciMLBase", "SciMLLogging", "SparseArrays", "SparseConnectivityTracer", "SparseMatrixColorings", "SymbolicIndexingInterface"] -git-tree-sha1 = "a3d7837832e515111c95a02df7dc55edbdf17d8a" +git-tree-sha1 = "642ea067d729f1f18795a434550b40de0a4fbbc8" uuid = "bca83a33-5cc9-4baa-983d-23429ab6bcbb" -version = "5.1.0" +version = "5.1.1" [deps.OptimizationBase.extensions] OptimizationChainRulesCoreExt = "ChainRulesCore" @@ -1760,10 +1771,10 @@ uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.8.1" [[deps.OrdinaryDiffEqCore]] -deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ConcreteStructs", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FillArrays", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "Polyester", "PrecompileTools", "Preferences", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Static", "StaticArrayInterface", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "a045f288671d99e23efc4ea32564cedd0fc7373d" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ConcreteStructs", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "PrecompileTools", "Preferences", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "86c210d134f09139a294f0329006d6cc20275650" uuid = "bbf590c4-e513-4bbe-9b18-05decba2e5d8" -version = "3.23.0" +version = "4.0.0" [deps.OrdinaryDiffEqCore.extensions] OrdinaryDiffEqCoreMooncakeExt = "Mooncake" @@ -1774,15 +1785,15 @@ version = "3.23.0" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[deps.OrdinaryDiffEqTsit5]] -deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static", "TruncatedStacktraces"] -git-tree-sha1 = "6e6173f4d0db8b8136d5fccdcdb7e8abe800a352" +deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "d9cedcfa2cdae8859b4510b9d01ada9852cd6d9d" uuid = "b1df2697-797e-41e3-8120-5422d3b24e4a" -version = "1.10.0" +version = "2.0.0" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" -version = "10.44.0+1" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] @@ -1814,15 +1825,15 @@ version = "0.5.12" [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "0662b083e11420952f2e62e17eddae7fc07d5997" +git-tree-sha1 = "58e5ed5e386e156bd93e86b305ebd21ac63d2d04" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" -version = "1.57.0+0" +version = "1.57.1+0" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "7d2f8f21da5db6a806faf7b9b292296da42b2810" +git-tree-sha1 = "5d5e0a78e971354b1c7bff0655d11fdc1b0e12c8" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.3" +version = "2.8.4" [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] @@ -1833,7 +1844,7 @@ version = "0.44.2+0" [[deps.Pkg]] deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.12.1" +version = "1.11.0" weakdeps = ["REPL"] [deps.Pkg.extensions] @@ -1857,18 +1868,6 @@ git-tree-sha1 = "67afbcbe9e184d6729a92a022147ed4cf972ca7b" uuid = "e409e4f3-bfea-5376-8464-e040bb5c01ab" version = "0.4.7" -[[deps.Polyester]] -deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "16bbc30b5ebea91e9ce1671adc03de2832cff552" -uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.19" - -[[deps.PolyesterWeave]] -deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] -git-tree-sha1 = "645bed98cd47f72f67316fd42fc47dee771aefcd" -uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad" -version = "0.2.2" - [[deps.PolygonOps]] git-tree-sha1 = "77b3d3605fc1cd0b42d95eba87dfcd2bf67d5ff6" uuid = "647866c9-e3ac-4575-94e7-e3d426903924" @@ -1892,9 +1891,9 @@ version = "1.2.0" [[deps.PrecompileTools]] deps = ["Preferences"] -git-tree-sha1 = "07a921781cab75691315adc645096ed5e370cb77" +git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.3.3" +version = "1.2.1" [[deps.Preferences]] deps = ["TOML"] @@ -1914,7 +1913,6 @@ uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" version = "1.11.0" [[deps.Profile]] -deps = ["StyledStrings"] uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79" version = "1.11.0" @@ -1937,9 +1935,9 @@ version = "1.0.2" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9da16da70037ba9d701192e27befedefb91ec284" +git-tree-sha1 = "5e8e8b0ab68215d7a2b14b9921a946fee794749e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.11.2" +version = "2.11.3" [deps.QuadGK.extensions] QuadGKEnzymeExt = "Enzyme" @@ -1958,7 +1956,7 @@ weakdeps = ["Distributions"] QuasiMonteCarloDistributionsExt = "Distributions" [[deps.REPL]] -deps = ["InteractiveUtils", "JuliaSyntaxHighlighting", "Markdown", "Sockets", "StyledStrings", "Unicode"] +deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" version = "1.11.0" @@ -1990,16 +1988,19 @@ version = "1.3.4" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "LinearAlgebra", "PrecompileTools", "RecipesBase", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "18d2a6fd1ea9a8205cadb3a5704f8e51abdd748b" +git-tree-sha1 = "57b6fb3932fc8d1fc911f840d2c9de5fe3ba5008" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.48.0" +version = "4.3.0" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsCUDAExt = "CUDA" RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsFastBroadcastPolyesterExt = ["FastBroadcast", "Polyester"] RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsKernelAbstractionsExt = "KernelAbstractions" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsMooncakeExt = "Mooncake" RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] RecursiveArrayToolsStatisticsExt = "Statistics" @@ -2009,11 +2010,14 @@ version = "3.48.0" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" @@ -2076,9 +2080,9 @@ version = "0.2.1" [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "7257165d5477fd1025f7cb656019dcb6b0512c38" +git-tree-sha1 = "cfcdc949c4660544ab0fdeed169561cb22f835f4" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.17" +version = "0.5.18" [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" @@ -2090,16 +2094,11 @@ git-tree-sha1 = "e24dc23107d426a096d3eae6c165b921e74c18e4" uuid = "fdea26ae-647d-5447-a871-4b548cad5224" version = "3.7.2" -[[deps.SIMDTypes]] -git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" -uuid = "94e857df-77ce-4151-89e5-788b33177be4" -version = "0.1.0" - [[deps.SciMLBase]] -deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Moshi", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "6e8c1bb72b768923d409edface0b3dcf61180d8d" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "Random", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] +git-tree-sha1 = "450a8405f96d0a7c6caabed0852def06ba8c6bf1" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.152.1" +version = "3.7.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2107,7 +2106,6 @@ version = "2.152.1" SciMLBaseDistributionsExt = "Distributions" SciMLBaseEnzymeExt = "Enzyme" SciMLBaseForwardDiffExt = "ForwardDiff" - SciMLBaseMLStyleExt = "MLStyle" SciMLBaseMakieExt = "Makie" SciMLBaseMeasurementsExt = "Measurements" SciMLBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" @@ -2127,7 +2125,6 @@ version = "2.152.1" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - MLStyle = "d8e11817-5142-5d16-987a-aa16d5891078" Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" @@ -2148,9 +2145,9 @@ version = "0.1.3" [[deps.SciMLJacobianOperators]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DifferentiationInterface", "FastClosures", "LinearAlgebra", "SciMLBase", "SciMLOperators"] -git-tree-sha1 = "e96d5e96debf7f80a50d0b976a13dea556ccfd3a" +git-tree-sha1 = "7156a5b51cba1bea33a82a036939ead4131f92bc" uuid = "19f34311-ddf3-4b8b-af20-060888a46c0e" -version = "0.1.12" +version = "0.1.13" [[deps.SciMLLogging]] deps = ["Logging", "LoggingExtras", "Preferences"] @@ -2166,9 +2163,9 @@ version = "1.9.1" [[deps.SciMLOperators]] deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra"] -git-tree-sha1 = "794c760e6aafe9f40dcd7dd30526ea33f0adc8b7" +git-tree-sha1 = "0e34162268883db01c04f988895a80d0659071bb" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "1.15.1" +version = "1.17.0" weakdeps = ["SparseArrays", "StaticArraysCore"] [deps.SciMLOperators.extensions] @@ -2256,7 +2253,7 @@ version = "1.2.2" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -version = "1.12.0" +version = "1.11.0" [[deps.SparseConnectivityTracer]] deps = ["ADTypes", "DocStringExtensions", "FillArrays", "LinearAlgebra", "Random", "SparseArrays"] @@ -2280,28 +2277,31 @@ version = "1.2.1" [[deps.SparseMatrixColorings]] deps = ["ADTypes", "DocStringExtensions", "LinearAlgebra", "PrecompileTools", "Random", "SparseArrays"] -git-tree-sha1 = "1c1be8c6fdfaf9b6c9e156c509e672953b8e6af7" +git-tree-sha1 = "f63d76c7b7c329cf11badd564fd8ba877b09c3fe" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.4.26" +version = "0.4.27" [deps.SparseMatrixColorings.extensions] - SparseMatrixColoringsCUDAExt = "CUDA" + SparseMatrixColoringsCUDAExt = ["CUDA", "cuSPARSE"] SparseMatrixColoringsCliqueTreesExt = "CliqueTrees" SparseMatrixColoringsColorsExt = "Colors" + SparseMatrixColoringsGPUArraysExt = "GPUArrays" SparseMatrixColoringsJuMPExt = ["JuMP", "MathOptInterface"] [deps.SparseMatrixColorings.weakdeps] CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" + GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" JuMP = "4076af6c-e467-56ae-b986-b466b2749572" MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" + cuSPARSE = "b26da814-b3bc-49ef-b0ee-c816305aa060" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "5acc6a41b3082920f79ca3c759acbcecf18a8d78" +git-tree-sha1 = "2700b235561b0335d5bef7097a111dc513b8655e" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.7.1" +version = "2.7.2" weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] @@ -2319,23 +2319,6 @@ git-tree-sha1 = "be1cf4eb0ac528d96f5115b4ed80c26a8d8ae621" uuid = "cae243ae-269e-4f55-b966-ac2d0dc13c15" version = "0.1.2" -[[deps.Static]] -deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools", "SciMLPublic"] -git-tree-sha1 = "49440414711eddc7227724ae6e570c7d5559a086" -uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.3.1" - -[[deps.StaticArrayInterface]] -deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "SciMLPublic", "Static"] -git-tree-sha1 = "aa1ea41b3d45ac449d10477f65e2b40e3197a0d2" -uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.9.0" -weakdeps = ["OffsetArrays", "StaticArrays"] - - [deps.StaticArrayInterface.extensions] - StaticArrayInterfaceOffsetArraysExt = "OffsetArrays" - StaticArrayInterfaceStaticArraysExt = "StaticArrays" - [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] git-tree-sha1 = "246a8bb2e6667f832eea063c3a56aef96429a3db" @@ -2385,12 +2368,6 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] StatsFunsChainRulesCoreExt = "ChainRulesCore" StatsFunsInverseFunctionsExt = "InverseFunctions" -[[deps.StrideArraysCore]] -deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "83151ba8065a73f53ca2ae98bc7274d817aa30f2" -uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.5.8" - [[deps.StringEncodings]] deps = ["Libiconv_jll"] git-tree-sha1 = "b765e46ba27ecf6b44faf70df40c57aa3a547dcb" @@ -2399,9 +2376,9 @@ version = "0.3.7" [[deps.StructArrays]] deps = ["ConstructionBase", "DataAPI", "Tables"] -git-tree-sha1 = "a2c37d815bf00575332b7bd0389f771cb7987214" +git-tree-sha1 = "ad8002667372439f2e3611cfd14097e03fa4bccd" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.7.2" +version = "0.7.3" [deps.StructArrays.extensions] StructArraysAdaptExt = "Adapt" @@ -2429,7 +2406,7 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "7.8.3+2" +version = "7.7.0+0" [[deps.SymbolicIndexingInterface]] deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] @@ -2471,22 +2448,11 @@ git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" version = "0.1.1" -[[deps.Test]] -deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] -uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" -version = "1.11.0" - -[[deps.ThreadingUtilities]] -deps = ["ManualMemory"] -git-tree-sha1 = "d969183d3d244b6c33796b5ed01ab97328f2db85" -uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" -version = "0.5.5" - [[deps.TiffImages]] -deps = ["ColorTypes", "DataStructures", "DocStringExtensions", "FileIO", "FixedPointNumbers", "IndirectArrays", "Inflate", "Mmap", "OffsetArrays", "PkgVersion", "PrecompileTools", "ProgressMeter", "SIMD", "UUIDs"] -git-tree-sha1 = "08c10bc34f4e7743f530793d0985bf3c254e193d" +deps = ["CodecZstd", "ColorTypes", "DataStructures", "DocStringExtensions", "FileIO", "FixedPointNumbers", "IndirectArrays", "Inflate", "Mmap", "OffsetArrays", "PkgVersion", "PrecompileTools", "ProgressMeter", "SIMD", "UUIDs"] +git-tree-sha1 = "9ca5f1f2d42f80df4b8c9f6ab5a64f438bbd9976" uuid = "731e570b-9d59-4bfa-96dc-6df516fadf69" -version = "0.11.8" +version = "0.11.9" [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] @@ -2571,9 +2537,9 @@ version = "1.1.0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "9cce64c0fdd1960b597ba7ecda2950b5ed957438" +git-tree-sha1 = "b29c22e245d092b8b4e8d3c09ad7baa586d9f573" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.8.2+0" +version = "5.8.3+0" [[deps.Xorg_libX11_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] @@ -2613,9 +2579,9 @@ version = "0.9.12+0" [[deps.Xorg_libpciaccess_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "4909eb8f1cbf6bd4b1c30dd18b2ead9019ef2fad" +git-tree-sha1 = "58972370b81423fc546c56a60ed1a009450177c3" uuid = "a65dc6b1-eb27-53a1-bb3e-dea574b5389e" -version = "0.18.1+0" +version = "0.19.0+0" [[deps.Xorg_libxcb_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXau_jll", "Xorg_libXdmcp_jll"] @@ -2650,7 +2616,7 @@ version = "4.3.6+0" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.3.1+2" +version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2666,9 +2632,9 @@ version = "0.2.3+0" [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" +git-tree-sha1 = "850b06095ee71f0135d644ffd8a52850699581ed" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.13.1+0" +version = "3.13.3+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] @@ -2679,7 +2645,7 @@ version = "0.17.4+0" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.15.0+0" +version = "5.11.0+0" [[deps.libdrm_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libpciaccess_jll"] @@ -2695,9 +2661,9 @@ version = "2.0.4+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" +git-tree-sha1 = "e51150d5ab85cee6fc36726850f0e627ad2e4aba" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.55+0" +version = "1.6.58+0" [[deps.libsixel_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "libpng_jll"] @@ -2732,7 +2698,7 @@ version = "1.6.0+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.64.0+1" +version = "1.59.0+0" [[deps.oneTBB_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] @@ -2741,9 +2707,9 @@ uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" version = "2022.0.0+1" [[deps.p7zip_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] +deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.7.0+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] diff --git a/benchmarks/StiffBVP/Project.toml b/benchmarks/StiffBVP/Project.toml index a8bce19c9..3a334e0ca 100644 --- a/benchmarks/StiffBVP/Project.toml +++ b/benchmarks/StiffBVP/Project.toml @@ -14,7 +14,7 @@ BenchmarkTools = "1" BoundaryValueDiffEq = "5.16" BracketingNonlinearSolve = "1.1" CairoMakie = "0.12, 0.13, 0.14, 0.15" -DiffEqDevTools = "2.48" +DiffEqDevTools = "3" Interpolations = "0.15.1, 0.16" ODEInterface = "0.5" SciMLBenchmarks = "0.1" diff --git a/benchmarks/StiffDDE/Manifest.toml b/benchmarks/StiffDDE/Manifest.toml index fcaf661ac..1524d25b9 100644 --- a/benchmarks/StiffDDE/Manifest.toml +++ b/benchmarks/StiffDDE/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.11" +julia_version = "1.11.9" manifest_format = "2.0" -project_hash = "ba0489c0add4550a8807815f584046e3919db5e0" +project_hash = "7edcb0ed43c5c4a9edc64b1a78b2b20a904b0417" [[deps.ADTypes]] -git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" +git-tree-sha1 = "bbc22a9a08a0ef6460041086d8a7b27940ed4ffd" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.21.0" +version = "1.22.0" [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" @@ -45,9 +45,9 @@ version = "0.1.44" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "35ea197a51ce46fcd01c4a44befce0578a1aaeca" +git-tree-sha1 = "0761717147821d696c9470a7a86364b2fbd22fd8" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.5.0" +version = "4.5.2" weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] @@ -62,13 +62,13 @@ version = "1.1.3" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "78b3a7a536b4b0a747a0f296ea77091ca0a9f9a3" +git-tree-sha1 = "54f895554d05c83e3dd59f6a396671dae8999573" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.23.0" +version = "7.24.0" [deps.ArrayInterface.extensions] ArrayInterfaceAMDGPUExt = "AMDGPU" @@ -102,26 +102,22 @@ version = "7.23.0" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +version = "1.11.0" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.BitFlags]] git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" version = "0.1.9" -[[deps.BitTwiddlingConvenienceFunctions]] -deps = ["Static"] -git-tree-sha1 = "f21cfd4950cb9f0587d5067e69405ad2acd27b87" -uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" -version = "0.1.6" - [[deps.BracketingNonlinearSolve]] deps = ["CommonSolve", "ConcreteStructs", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "d9b66401c1fa982c7ca984d0566af5a9b3551420" +git-tree-sha1 = "7ad7171d693ae5552ac43862e7f6b61df4471c2b" uuid = "70df07ce-3d50-431d-a3e7-ca6ddb60ac1e" -version = "1.12.0" +version = "1.12.1" [deps.BracketingNonlinearSolve.extensions] BracketingNonlinearSolveChainRulesCoreExt = ["ChainRulesCore", "ForwardDiff"] @@ -137,24 +133,12 @@ git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" version = "1.0.9+0" -[[deps.CPUSummary]] -deps = ["CpuId", "IfElse", "PrecompileTools", "Preferences", "Static"] -git-tree-sha1 = "f3a21d7fc84ba618a779d1ed2fcca2e682865bab" -uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" -version = "0.2.7" - [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] git-tree-sha1 = "d0efe2c6fdcdaa1c161d206aa8b933788397ec71" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" version = "1.18.6+0" -[[deps.CloseOpenIntervals]] -deps = ["Static", "StaticArrayInterface"] -git-tree-sha1 = "05ba0d07cd4fd8b7a39541e31a7b0254704ea581" -uuid = "fb6a15b2-703c-40df-9091-08a04967cfa9" -version = "0.1.13" - [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" @@ -172,13 +156,11 @@ deps = ["FixedPointNumbers", "Random"] git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" version = "0.12.1" +weakdeps = ["StyledStrings"] [deps.ColorTypes.extensions] StyledStringsExt = "StyledStrings" - [deps.ColorTypes.weakdeps] - StyledStrings = "f489334b-da3d-4c2e-b8f0-e476e12c162b" - [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" @@ -206,11 +188,6 @@ git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.1" -[[deps.CommonWorldInvalidations]] -git-tree-sha1 = "ae52d1c52048455e85a387fbee9be553ec2b68d0" -uuid = "f70d9fcc-98c5-4d4a-abd7-e4cdeebd8ca8" -version = "1.0.0" - [[deps.Compat]] deps = ["TOML", "UUIDs"] git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" @@ -272,17 +249,11 @@ git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" version = "0.6.3" -[[deps.CpuId]] -deps = ["Markdown"] -git-tree-sha1 = "fcbb72b032692610bfbdb15018ac16a36cf2e406" -uuid = "adafc99b-e345-5852-983c-f28acb93d879" -version = "0.3.1" - [[deps.DDEProblemLibrary]] deps = ["DiffEqBase"] -git-tree-sha1 = "66b00d526a17b636a77f449b9f8ec7fed6cd7d1c" +git-tree-sha1 = "4e71dd9d171e68ef36f37947adc51166cad2ec44" uuid = "f42792ee-6ffc-4e2a-ae83-8ee2f22de800" -version = "0.1.4" +version = "0.1.5" [[deps.DataAPI]] git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" @@ -303,6 +274,7 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" [[deps.Dbus_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] @@ -312,9 +284,9 @@ version = "1.16.2+0" [[deps.DelayDiffEq]] deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "FastBroadcast", "ForwardDiff", "LinearAlgebra", "Logging", "OrdinaryDiffEqCore", "OrdinaryDiffEqDefault", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqFunctionMap", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqRosenbrock", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SimpleNonlinearSolve", "SymbolicIndexingInterface"] -git-tree-sha1 = "1d7cc27e09d2815217d06ab87923677cdd120a53" +git-tree-sha1 = "d1200b6bdf69afafba5a67b51da0f1207f9603c0" uuid = "bcd4f6db-9728-5f36-b5f7-82caef46ccdb" -version = "5.72.0" +version = "6.0.0" [deps.DelayDiffEq.extensions] DelayDiffEqStochasticDiffEqCoreExt = ["StochasticDiffEqCore", "DiffEqNoiseProcess", "Random"] @@ -331,10 +303,10 @@ uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" version = "1.9.1" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "803d463050fae6121f5d15fd449e9538cb993ad9" +deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "2d7ca58e6ce2d1f7a435773d73d111741e283070" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.214.1" +version = "7.1.0" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" @@ -374,16 +346,16 @@ version = "6.214.1" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.DiffEqDevTools]] -deps = ["BracketingNonlinearSolve", "CommonSolve", "DiffEqBase", "DiffEqNoiseProcess", "Distributed", "ExplicitImports", "LinearAlgebra", "Logging", "RecipesBase", "RecursiveArrayTools", "RootedTrees", "SciMLBase", "Statistics", "StructArrays"] -git-tree-sha1 = "85b69022536add40c3ef422f6f2224cd59f65076" +deps = ["DiffEqBase", "DiffEqNoiseProcess", "Distributed", "LinearAlgebra", "Logging", "NLsolve", "RecipesBase", "RecursiveArrayTools", "RootedTrees", "SciMLBase", "Statistics", "StructArrays"] +git-tree-sha1 = "cc290a2fdad4d332ba6a88953eaf5800687ccd49" uuid = "f3b72e0c-5b89-59e1-b016-84e28bfd966d" -version = "2.51.0" +version = "3.0.0" [[deps.DiffEqNoiseProcess]] deps = ["CommonSolve", "DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "PoissonRandom", "QuadGK", "Random", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "feb625b2aa510b7f8aee69d3fc60c1eed53640cc" +git-tree-sha1 = "5b5fe6eb9e994ff0de4e84fe149b03c706fd6403" uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" -version = "5.28.0" +version = "5.31.0" [deps.DiffEqNoiseProcess.extensions] DiffEqNoiseProcessOptimExt = "Optim" @@ -407,9 +379,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +git-tree-sha1 = "d0250552e42bf7cc36479fd38a6e30004c9e8c2b" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.7.16" +version = "0.7.17" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -419,7 +391,7 @@ version = "0.7.16" DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] - DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGPUArraysCoreExt = ["GPUArraysCore", "Adapt"] DifferentiationInterfaceGTPSAExt = "GTPSA" DifferentiationInterfaceMooncakeExt = "Mooncake" DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] @@ -433,6 +405,7 @@ version = "0.7.16" DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] [deps.DifferentiationInterface.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" @@ -455,15 +428,30 @@ version = "0.7.16" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" +[[deps.Distances]] +deps = ["LinearAlgebra", "Statistics", "StatsAPI"] +git-tree-sha1 = "c7e3a542b999843086e2f29dac96a618c105be1d" +uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" +version = "0.10.12" + + [deps.Distances.extensions] + DistancesChainRulesCoreExt = "ChainRulesCore" + DistancesSparseArraysExt = "SparseArrays" + + [deps.Distances.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" +git-tree-sha1 = "e421c1938fafab0165b04dc1a9dbe2a26272952c" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.123" +version = "0.25.125" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -491,9 +479,9 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.7" [[deps.EnzymeCore]] -git-tree-sha1 = "24bbb6fc8fb87eb71c1f8d00184a60fc22c63903" +git-tree-sha1 = "c6ee69ee502060982d12dbaaf3d8fcb4e835a0d1" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.8.19" +version = "0.8.20" [deps.EnzymeCore.extensions] AdaptExt = "Adapt" @@ -517,26 +505,15 @@ version = "0.1.11" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "27af30de8b5445644e8ffe3bcb0d72049c089cf1" +git-tree-sha1 = "8f05e9a2e7c2e3eb524102bb2926c5743c07fbe1" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.7.3+0" - -[[deps.ExplicitImports]] -deps = ["Markdown", "Pkg", "PrecompileTools", "TOML", "Test"] -git-tree-sha1 = "a8b6c26bf0ea9f8c4bad71e109a5fa64f34be392" -uuid = "7d51a73a-1435-4ff3-83d9-f097790105c7" -version = "1.15.0" +version = "2.8.0+0" [[deps.ExprTools]] git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" version = "0.1.10" -[[deps.ExproniconLite]] -git-tree-sha1 = "c13f0b150373771b0fdc1713c97860f8df12e6c2" -uuid = "55351af7-c7e9-48d6-89ff-24e801d99491" -version = "0.10.14" - [[deps.FFMPEG]] deps = ["FFMPEG_jll"] git-tree-sha1 = "95ecf07c2eea562b5adbd0696af6db62c0f52560" @@ -545,21 +522,24 @@ version = "0.4.5" [[deps.FFMPEG_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libva_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "66381d7059b5f3f6162f28831854008040a4e905" +git-tree-sha1 = "cac41ca6b2d399adfc95e51240566f8a60a80806" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "8.0.1+1" +version = "8.1.0+0" [[deps.FastBroadcast]] deps = ["ArrayInterface", "LinearAlgebra"] -git-tree-sha1 = "e3e64918b1604ba8b1734c4a27febdfe5d09e235" +git-tree-sha1 = "7feeed2c9a7fa272189a5561bebf0c4ccaedb6ec" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "1.3.1" -weakdeps = ["Polyester", "Static"] +version = "1.3.2" [deps.FastBroadcast.extensions] FastBroadcastPolyesterExt = "Polyester" FastBroadcastStaticExt = "Static" + [deps.FastBroadcast.weakdeps] + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" + Static = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" + [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" @@ -590,6 +570,7 @@ version = "1.3.1" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" +version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] @@ -606,9 +587,9 @@ weakdeps = ["PDMats", "SparseArrays", "StaticArrays", "Statistics"] [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "9340ca07ca27093ff68418b7558ca37b05f8aeb1" +git-tree-sha1 = "f7017a4f337f8df189fcce98e32b67a1298a2115" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.29.0" +version = "2.31.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -668,9 +649,9 @@ version = "1.1.3" [[deps.FunctionWrappersWrappers]] deps = ["FunctionWrappers", "PrecompileTools", "TruncatedStacktraces"] -git-tree-sha1 = "648dc754255ecee39da5a06bd2969bc5a4c360b4" +git-tree-sha1 = "c1b0c3a166a2a393257aa888787ca817532e14ce" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "1.2.0" +version = "1.8.0" [deps.FunctionWrappersWrappers.extensions] FunctionWrappersWrappersEnzymeExt = ["Enzyme", "EnzymeCore"] @@ -684,12 +665,13 @@ version = "1.2.0" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" +version = "1.11.0" [[deps.GLFW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] -git-tree-sha1 = "b7bfd56fa66616138dfe5237da4dc13bbd83c67f" +git-tree-sha1 = "9e0fb9e54594c47f278d75063980e43066e26e20" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.4.1+0" +version = "3.4.1+1" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -739,9 +721,9 @@ version = "3.7.0+0" [[deps.Git_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "dc34a3e3d96b4ed305b641e626dc14c12b7824b8" +git-tree-sha1 = "0dd4cfb426924210c8f42742751cbde74b27bfa3" uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb" -version = "2.53.0+0" +version = "2.54.0+0" [[deps.Glib_jll]] deps = ["Artifacts", "GettextRuntime_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] @@ -798,11 +780,6 @@ version = "1.34.4" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" Revise = "295af30f-e4ad-537b-8983-00126c2a3abe" -[[deps.IfElse]] -git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" -uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" -version = "0.1.1" - [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] git-tree-sha1 = "ec1debd61c300961f98064cfb21287613ad7f303" @@ -812,6 +789,7 @@ version = "2025.2.0+0" [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" +version = "1.11.0" [[deps.InverseFunctions]] git-tree-sha1 = "a779299d77cd080bf77b97535acecd73e1c5e5cb" @@ -851,17 +829,11 @@ git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.4" -[[deps.Jieko]] -deps = ["ExproniconLite"] -git-tree-sha1 = "2f05ed29618da60c06a87e9c033982d4f71d0b6c" -uuid = "ae98c720-c025-4a4a-838c-29b094483192" -version = "0.2.1" - [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "b6893345fd6658c8e475d40155789f4860ac3b21" +git-tree-sha1 = "c0c9b76f3520863909825cbecdef58cd63de705a" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.1.4+0" +version = "3.1.5+0" [[deps.Krylov]] deps = ["LinearAlgebra", "Printf", "SparseArrays"] @@ -877,9 +849,9 @@ version = "3.100.3+0" [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "aaafe88dccbd957a8d82f7d05be9b69172e0cee3" +git-tree-sha1 = "17b94ecafcfa45e8360a4fc9ca6b583b049e4e37" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "4.0.1+0" +version = "4.1.0+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -910,15 +882,10 @@ version = "0.16.10" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" tectonic_jll = "d7dd28d6-a5e6-559c-9131-7eb760cdacc5" -[[deps.LayoutPointers]] -deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "a9eaadb366f5493a5654e843864c13d8b107548c" -uuid = "10f19ff3-798f-405d-979b-55457f8fc047" -version = "0.1.17" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" +version = "1.11.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] @@ -928,16 +895,17 @@ version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.4.0+0" +version = "8.6.0+0" [[deps.LibGit2]] deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +version = "1.11.0" [[deps.LibGit2_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.6.4+0" +version = "1.7.2+0" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] @@ -946,6 +914,7 @@ version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" +version = "1.11.0" [[deps.Libffi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -967,9 +936,9 @@ version = "1.18.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "97bbca976196f2a1eb9607131cb108c69ec3f8a6" +git-tree-sha1 = "cc3ad4faf30015a3e8094c9b5b7f19e85bdf2386" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] @@ -979,31 +948,36 @@ version = "4.7.2+0" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d0205286d9eceadc518742860bf23f703779a3d6" +git-tree-sha1 = "d620582b1f0cbe2c72dd1d5bd195a9ce73370ab1" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.LineSearch]] deps = ["ADTypes", "CommonSolve", "ConcreteStructs", "FastClosures", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "SciMLBase", "SciMLJacobianOperators", "StaticArraysCore"] -git-tree-sha1 = "9f7253c0574b4b585c8909232adb890930da980a" +git-tree-sha1 = "fd58a77c92e7c8f1db25c9839127d52943a49349" uuid = "87fe0de2-c867-4266-b59a-2f0a94fc965b" -version = "0.1.6" +version = "0.1.9" +weakdeps = ["LineSearches"] [deps.LineSearch.extensions] LineSearchLineSearchesExt = "LineSearches" - [deps.LineSearch.weakdeps] - LineSearches = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" +[[deps.LineSearches]] +deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Printf"] +git-tree-sha1 = "9ea3422d03222c6de679934d1c08f0a99405aa03" +uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" +version = "7.5.1" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +version = "1.11.0" [[deps.LinearSolve]] deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "35b6d3b3cfa50f97a7e13bfdd3b82d9f9fcb68af" +git-tree-sha1 = "42b5cb44317e89ef75dd841c9c8eba9045bf9ff0" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "3.72.0" +version = "3.75.0" [deps.LinearSolve.extensions] LinearSolveAMDGPUExt = "AMDGPU" @@ -1028,7 +1002,9 @@ version = "3.72.0" LinearSolveKrylovKitExt = "KrylovKit" LinearSolveMetalExt = "Metal" LinearSolveMooncakeExt = "Mooncake" + LinearSolvePETScCSRExt = ["PETSc", "SparseArrays", "SparseMatricesCSR"] LinearSolvePETScExt = ["PETSc", "SparseArrays"] + LinearSolvePETScMPIExt = ["PETSc", "PartitionedArrays", "SparseArrays", "SparseMatricesCSR"] LinearSolveParUExt = ["ParU_jll", "SparseArrays"] LinearSolvePardisoExt = ["Pardiso", "SparseArrays"] LinearSolveRecursiveFactorizationExt = "RecursiveFactorization" @@ -1061,8 +1037,10 @@ version = "3.72.0" PETSc = "ace2c81b-2b5f-4b1e-a30d-d662738edfe0" ParU_jll = "9e0b026c-e8ce-559c-a2c4-6a3d5c955bc9" Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" + PartitionedArrays = "5a9dfac6-5c52-46f7-8278-5e2210713be9" RecursiveFactorization = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseMatricesCSR = "a0a7dd2c-ebf4-11e9-1f05-cf50bc540ca1" Sparspak = "e56a9233-b9d6-4f03-8d0f-1825330902ac" blis_jll = "6136c539-28a5-5bf0-87cc-b183200dce32" @@ -1084,6 +1062,7 @@ version = "0.3.29" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" +version = "1.11.0" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] @@ -1102,14 +1081,10 @@ git-tree-sha1 = "1e0228a030642014fe5cfe68c2c0a818f9e3f522" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" version = "0.5.16" -[[deps.ManualMemory]] -git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" -uuid = "d125e4d3-2237-4719-b19c-fa641b8a4667" -version = "0.1.8" - [[deps.Markdown]] deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +version = "1.11.0" [[deps.MaybeInplace]] deps = ["ArrayInterface", "LinearAlgebra", "MacroTools"] @@ -1130,7 +1105,7 @@ version = "1.1.10" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.1010+0" +version = "2.28.6+0" [[deps.Measures]] git-tree-sha1 = "b513cedd20d9c914783d8ad83d08120702bf2c77" @@ -1145,16 +1120,11 @@ version = "1.2.0" [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.Moshi]] -deps = ["ExproniconLite", "Jieko"] -git-tree-sha1 = "53f817d3e84537d84545e0ad749e483412dd6b2a" -uuid = "2e0e35c7-a2e4-4343-998d-7ef72827ed2d" -version = "0.3.7" +version = "1.11.0" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2025.12.2" +version = "2023.12.12" [[deps.MuladdMacro]] git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" @@ -1167,6 +1137,18 @@ git-tree-sha1 = "3cbd5dda543bc59f2e482607ccf84b633724fc32" uuid = "ffc61752-8dc7-55ee-8c37-f3e9cdd09e70" version = "1.0.21" +[[deps.NLSolversBase]] +deps = ["ADTypes", "DifferentiationInterface", "Distributed", "FiniteDiff", "ForwardDiff"] +git-tree-sha1 = "25a6638571a902ecfb1ae2a18fc1575f86b1d4df" +uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" +version = "7.10.0" + +[[deps.NLsolve]] +deps = ["Distances", "LineSearches", "LinearAlgebra", "NLSolversBase", "Printf", "Reexport"] +git-tree-sha1 = "019f12e9a1a7880459d0173c182e6a99365d7ac1" +uuid = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" +version = "4.5.1" + [[deps.NaNMath]] deps = ["OpenLibm_jll"] git-tree-sha1 = "9b8215b1ee9e78a293f99797cd31375471b2bcae" @@ -1179,9 +1161,9 @@ version = "1.2.0" [[deps.NonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SciMLLogging", "Setfield", "SimpleNonlinearSolve", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "373b688150f160b68083733657246532389e4280" +git-tree-sha1 = "ae0b0f875e4dfda538ab6977ec7939126ee9a1fe" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "4.17.0" +version = "4.19.0" [deps.NonlinearSolve.extensions] NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" @@ -1212,9 +1194,9 @@ version = "4.17.0" [[deps.NonlinearSolveBase]] deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "LogExpFunctions", "Markdown", "MaybeInplace", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "f58613b44ce12a3a74be0bc4a865cc1f2e776737" +git-tree-sha1 = "a19a5df29ef2b197499fc631fa1a59385ae15262" uuid = "be0214bd-f91f-a760-ac4e-3421ce2b2da0" -version = "2.22.0" +version = "2.25.0" [deps.NonlinearSolveBase.extensions] NonlinearSolveBaseBandedMatricesExt = "BandedMatrices" @@ -1244,15 +1226,15 @@ version = "2.22.0" [[deps.NonlinearSolveFirstOrder]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConcreteStructs", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLJacobianOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "ae36a13005343aed5e731f146637f61a54702444" +git-tree-sha1 = "ce68820a4f421fb5bee7ec4dcf875aff33886bfb" uuid = "5959db7a-ea39-4486-b5fe-2dd0bf03d60d" -version = "2.1.0" +version = "2.1.1" [[deps.NonlinearSolveQuasiNewton]] deps = ["ArrayInterface", "CommonSolve", "ConcreteStructs", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLOperators", "StaticArraysCore"] -git-tree-sha1 = "2ada8e9892fd60b3f01a4984704d66fca682bd50" +git-tree-sha1 = "538432ca1aea8bf63db02929bf870501f8a7c64c" uuid = "9a2c21bd-3a47-402d-9113-8faf9a0ee114" -version = "1.13.0" +version = "1.13.1" weakdeps = ["ForwardDiff"] [deps.NonlinearSolveQuasiNewton.extensions] @@ -1260,9 +1242,9 @@ weakdeps = ["ForwardDiff"] [[deps.NonlinearSolveSpectralMethods]] deps = ["CommonSolve", "ConcreteStructs", "LineSearch", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "e3e8be34968ad07be8734c3d6e42b3f14218b694" +git-tree-sha1 = "a3781e12becdf0ce5520bd97ec617e879bf4e9f2" uuid = "26075421-4e9a-44e1-8bd1-420ed7ad02b2" -version = "1.7.0" +version = "1.7.1" weakdeps = ["ForwardDiff"] [deps.NonlinearSolveSpectralMethods.extensions] @@ -1277,7 +1259,7 @@ version = "1.3.6+0" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.23+5" +version = "0.3.27+1" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] @@ -1320,16 +1302,16 @@ uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.8.1" [[deps.OrdinaryDiffEqBDF]] -deps = ["ADTypes", "ArrayInterface", "DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqSDIRK", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "8ebd2eb20a8ebb12911b40282d5b41e2db6d107b" +deps = ["ADTypes", "ArrayInterface", "DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqSDIRK", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "2a193931b5dc2400f7f4fb7593b23e0aca96a581" uuid = "6ad6398a-0878-4a85-9266-38940aa047c8" -version = "1.24.0" +version = "2.0.0" [[deps.OrdinaryDiffEqCore]] -deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ConcreteStructs", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "Polyester", "PrecompileTools", "Preferences", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Static", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "b901cac9dae908a96256f5870a2b8ef16e969ea9" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ConcreteStructs", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "PrecompileTools", "Preferences", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "86c210d134f09139a294f0329006d6cc20275650" uuid = "bbf590c4-e513-4bbe-9b18-05decba2e5d8" -version = "3.29.0" +version = "4.0.0" [deps.OrdinaryDiffEqCore.extensions] OrdinaryDiffEqCoreMooncakeExt = "Mooncake" @@ -1341,55 +1323,72 @@ version = "3.29.0" [[deps.OrdinaryDiffEqDefault]] deps = ["ADTypes", "DiffEqBase", "EnumX", "LinearAlgebra", "LinearSolve", "OrdinaryDiffEqBDF", "OrdinaryDiffEqCore", "OrdinaryDiffEqRosenbrock", "OrdinaryDiffEqTsit5", "OrdinaryDiffEqVerner", "PrecompileTools", "Preferences", "Reexport", "SciMLBase"] -git-tree-sha1 = "5fbd116f93790ce79c4beff8206e1b8e45c492a2" +git-tree-sha1 = "c2ad58656aff6d468109df04a246b018e92b21d8" uuid = "50262376-6c5a-4cf5-baba-aaf4f84d72d7" -version = "1.14.0" +version = "2.1.0" [[deps.OrdinaryDiffEqDifferentiation]] -deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "LinearAlgebra", "LinearSolve", "OrdinaryDiffEqCore", "SciMLBase", "SciMLOperators", "SparseMatrixColorings", "StaticArrays"] -git-tree-sha1 = "8b18ce8ab49cd04a1443fd63eb569d270a07090c" +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "LinearAlgebra", "LinearSolve", "OrdinaryDiffEqCore", "SciMLBase", "SciMLOperators", "SparseMatrixColorings", "StaticArraysCore"] +git-tree-sha1 = "faf3fe4824557bc72aa126a845586f71d377a70a" uuid = "4302a76b-040a-498a-8c04-15b101fed76b" -version = "2.7.0" +version = "3.0.0" weakdeps = ["SparseArrays"] [deps.OrdinaryDiffEqDifferentiation.extensions] OrdinaryDiffEqDifferentiationSparseArraysExt = "SparseArrays" [[deps.OrdinaryDiffEqFunctionMap]] -deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static"] -git-tree-sha1 = "2d2d59f9e530bca2f99934ecfde5430f6ad54bfe" +deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase"] +git-tree-sha1 = "eef8e157775473d60a02263dda25e0b6605c6c32" uuid = "d3585ca7-f5d3-4ba6-8057-292ed1abd90f" -version = "1.11.0" +version = "2.0.0" + +[[deps.OrdinaryDiffEqHighOrderRK]] +deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase"] +git-tree-sha1 = "fe87786107873545a84f1ee6673003094b59489f" +uuid = "d28bc4f8-55e1-4f49-af69-84c1a99f0f58" +version = "2.0.0" + +[[deps.OrdinaryDiffEqLowOrderRK]] +deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase"] +git-tree-sha1 = "def7e70848495f32963316dc2218ea30f0d290e2" +uuid = "1344f307-1e59-4825-a18e-ace9aa3fa4c6" +version = "2.0.0" [[deps.OrdinaryDiffEqNonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "DiffEqBase", "FastBroadcast", "FastClosures", "ForwardDiff", "LinearAlgebra", "LinearSolve", "MuladdMacro", "NonlinearSolve", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "PreallocationTools", "RecursiveArrayTools", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleNonlinearSolve", "SparseArrays", "StaticArrays"] -git-tree-sha1 = "7eabb9877144d3cfc894fee899a76439ee2070de" +deps = ["ADTypes", "ArrayInterface", "DiffEqBase", "FastBroadcast", "FastClosures", "ForwardDiff", "LinearAlgebra", "LinearSolve", "MuladdMacro", "NonlinearSolve", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "PreallocationTools", "RecursiveArrayTools", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleNonlinearSolve", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "c3e92bdb7bf16385e6f7b505f78601a2708eff28" uuid = "127b3ac7-2247-4354-8eb6-78cf4e7c58e8" -version = "1.26.0" +version = "2.0.0" [[deps.OrdinaryDiffEqRosenbrock]] -deps = ["ADTypes", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static"] -git-tree-sha1 = "25e5043968c80e0addead2d7533d30a608478842" +deps = ["ADTypes", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqRosenbrockTableaus", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase"] +git-tree-sha1 = "803334224154e4a2a9d984547dd4449d3ca71c63" uuid = "43230ef6-c299-4910-a778-202eb28ce4ce" -version = "1.29.0" +version = "2.0.0" + +[[deps.OrdinaryDiffEqRosenbrockTableaus]] +git-tree-sha1 = "66acd57301ea9c79ff92b13b72135af258c141ab" +uuid = "b4bd8bb3-f80f-41d2-9b21-73a655b304b9" +version = "2.0.0" [[deps.OrdinaryDiffEqSDIRK]] deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] -git-tree-sha1 = "c5e26fbadbad137fa2b7e3161a290a1becfec502" +git-tree-sha1 = "8df990b85ea063a20df3f1b1dddab9d0afec985c" uuid = "2d112036-d095-4a1e-ab9a-08536f3ecdbf" -version = "1.14.0" +version = "2.0.0" [[deps.OrdinaryDiffEqTsit5]] -deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static", "TruncatedStacktraces"] -git-tree-sha1 = "b305a813cc926ce31458e2b955612d9b719f1c38" +deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "d9cedcfa2cdae8859b4510b9d01ada9852cd6d9d" uuid = "b1df2697-797e-41e3-8120-5422d3b24e4a" -version = "1.11.0" +version = "2.0.0" [[deps.OrdinaryDiffEqVerner]] -deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static", "TruncatedStacktraces"] -git-tree-sha1 = "918dbbaeea6684d4d65907994650d9614bdd2eb2" +deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "fb8ae6a290beed2ef61fa2e7571d921e1100c365" uuid = "79d7bb75-1356-48c1-b8c0-6832512096c2" -version = "1.13.0" +version = "2.0.0" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -1408,15 +1407,15 @@ weakdeps = ["StatsBase"] [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "0662b083e11420952f2e62e17eddae7fc07d5997" +git-tree-sha1 = "58e5ed5e386e156bd93e86b305ebd21ac63d2d04" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" -version = "1.57.0+0" +version = "1.57.1+0" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "7d2f8f21da5db6a806faf7b9b292296da42b2810" +git-tree-sha1 = "5d5e0a78e971354b1c7bff0655d11fdc1b0e12c8" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.3" +version = "2.8.4" [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] @@ -1425,9 +1424,13 @@ uuid = "30392449-352a-5448-841d-b1acce4e97dc" version = "0.44.2+0" [[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.10.0" +version = "1.11.0" +weakdeps = ["REPL"] + + [deps.Pkg.extensions] + REPLExt = "REPL" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1467,18 +1470,6 @@ git-tree-sha1 = "67afbcbe9e184d6729a92a022147ed4cf972ca7b" uuid = "e409e4f3-bfea-5376-8464-e040bb5c01ab" version = "0.4.7" -[[deps.Polyester]] -deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "16bbc30b5ebea91e9ce1671adc03de2832cff552" -uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.19" - -[[deps.PolyesterWeave]] -deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] -git-tree-sha1 = "645bed98cd47f72f67316fd42fc47dee771aefcd" -uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad" -version = "0.2.2" - [[deps.PreallocationTools]] deps = ["Adapt", "ArrayInterface", "PrecompileTools"] git-tree-sha1 = "e16b73bf892c55d16d53c9c0dbd0fb31cb7e25da" @@ -1510,6 +1501,7 @@ version = "1.5.2" [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" +version = "1.11.0" [[deps.PtrArrays]] git-tree-sha1 = "4fbbafbc6251b883f4d2705356f3641f3652a7fe" @@ -1559,12 +1551,14 @@ version = "2.11.3" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" [[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" +version = "1.11.0" [[deps.Random]] deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +version = "1.11.0" [[deps.RecipesBase]] deps = ["PrecompileTools"] @@ -1580,17 +1574,19 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "LinearAlgebra", "PrecompileTools", "RecipesBase", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "d0282d612f22dcad7b81cf487b746e63aa2a6709" +git-tree-sha1 = "57b6fb3932fc8d1fc911f840d2c9de5fe3ba5008" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.54.0" +version = "4.3.0" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsCUDAExt = "CUDA" RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" RecursiveArrayToolsFastBroadcastPolyesterExt = ["FastBroadcast", "Polyester"] RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsKernelAbstractionsExt = "KernelAbstractions" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsMooncakeExt = "Mooncake" RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] RecursiveArrayToolsStatisticsExt = "Statistics" @@ -1600,11 +1596,13 @@ version = "3.54.0" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" @@ -1669,16 +1667,11 @@ version = "0.5.18" uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" -[[deps.SIMDTypes]] -git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" -uuid = "94e857df-77ce-4151-89e5-788b33177be4" -version = "0.1.0" - [[deps.SciMLBase]] -deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Moshi", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "908c0bf271604d09393a21c142116ab26f66f67c" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "Random", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] +git-tree-sha1 = "450a8405f96d0a7c6caabed0852def06ba8c6bf1" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.154.0" +version = "3.7.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1686,7 +1679,6 @@ version = "2.154.0" SciMLBaseDistributionsExt = "Distributions" SciMLBaseEnzymeExt = "Enzyme" SciMLBaseForwardDiffExt = "ForwardDiff" - SciMLBaseMLStyleExt = "MLStyle" SciMLBaseMakieExt = "Makie" SciMLBaseMeasurementsExt = "Measurements" SciMLBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" @@ -1706,7 +1698,6 @@ version = "2.154.0" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - MLStyle = "d8e11817-5142-5d16-987a-aa16d5891078" Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" @@ -1727,9 +1718,9 @@ version = "0.1.3" [[deps.SciMLJacobianOperators]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DifferentiationInterface", "FastClosures", "LinearAlgebra", "SciMLBase", "SciMLOperators"] -git-tree-sha1 = "e96d5e96debf7f80a50d0b976a13dea556ccfd3a" +git-tree-sha1 = "7156a5b51cba1bea33a82a036939ead4131f92bc" uuid = "19f34311-ddf3-4b8b-af20-060888a46c0e" -version = "0.1.12" +version = "0.1.13" [[deps.SciMLLogging]] deps = ["Logging", "LoggingExtras", "Preferences"] @@ -1745,9 +1736,9 @@ version = "1.9.1" [[deps.SciMLOperators]] deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra"] -git-tree-sha1 = "234869cf9fee9258a95464b7a7065cc7be84db00" +git-tree-sha1 = "0e34162268883db01c04f988895a80d0659071bb" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "1.16.0" +version = "1.17.0" weakdeps = ["SparseArrays", "StaticArraysCore"] [deps.SciMLOperators.extensions] @@ -1773,6 +1764,7 @@ version = "1.3.0" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" +version = "1.11.0" [[deps.Setfield]] deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] @@ -1793,9 +1785,9 @@ version = "1.2.0" [[deps.SimpleNonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "744c3f0fb186ad28376199c1e72ca39d0c614b5d" +git-tree-sha1 = "d688de789b7e643326caf9a1051376dadbcd8873" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "2.11.0" +version = "2.11.1" [deps.SimpleNonlinearSolve.extensions] SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" @@ -1809,6 +1801,7 @@ version = "2.11.0" [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" +version = "1.11.0" [[deps.SortingAlgorithms]] deps = ["DataStructures"] @@ -1819,26 +1812,29 @@ version = "1.2.2" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -version = "1.10.0" +version = "1.11.0" [[deps.SparseMatrixColorings]] deps = ["ADTypes", "DocStringExtensions", "LinearAlgebra", "PrecompileTools", "Random", "SparseArrays"] -git-tree-sha1 = "1c1be8c6fdfaf9b6c9e156c509e672953b8e6af7" +git-tree-sha1 = "f63d76c7b7c329cf11badd564fd8ba877b09c3fe" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.4.26" +version = "0.4.27" [deps.SparseMatrixColorings.extensions] - SparseMatrixColoringsCUDAExt = "CUDA" + SparseMatrixColoringsCUDAExt = ["CUDA", "cuSPARSE"] SparseMatrixColoringsCliqueTreesExt = "CliqueTrees" SparseMatrixColoringsColorsExt = "Colors" + SparseMatrixColoringsGPUArraysExt = "GPUArrays" SparseMatrixColoringsJuMPExt = ["JuMP", "MathOptInterface"] [deps.SparseMatrixColorings.weakdeps] CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" + GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" JuMP = "4076af6c-e467-56ae-b986-b466b2749572" MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" + cuSPARSE = "b26da814-b3bc-49ef-b0ee-c816305aa060" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -1858,26 +1854,6 @@ git-tree-sha1 = "4f96c596b8c8258cc7d3b19797854d368f243ddc" uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" version = "1.0.4" -[[deps.Static]] -deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools", "SciMLPublic"] -git-tree-sha1 = "49440414711eddc7227724ae6e570c7d5559a086" -uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.3.1" - -[[deps.StaticArrayInterface]] -deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "SciMLPublic", "Static"] -git-tree-sha1 = "aa1ea41b3d45ac449d10477f65e2b40e3197a0d2" -uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.9.0" - - [deps.StaticArrayInterface.extensions] - StaticArrayInterfaceOffsetArraysExt = "OffsetArrays" - StaticArrayInterfaceStaticArraysExt = "StaticArrays" - - [deps.StaticArrayInterface.weakdeps] - OffsetArrays = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] git-tree-sha1 = "246a8bb2e6667f832eea063c3a56aef96429a3db" @@ -1898,9 +1874,14 @@ uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" version = "1.4.4" [[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] +deps = ["LinearAlgebra"] +git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.10.0" +version = "1.11.1" +weakdeps = ["SparseArrays"] + + [deps.Statistics.extensions] + SparseArraysExt = ["SparseArrays"] [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1928,12 +1909,6 @@ version = "1.5.2" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" -[[deps.StrideArraysCore]] -deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "83151ba8065a73f53ca2ae98bc7274d817aa30f2" -uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.5.8" - [[deps.StringEncodings]] deps = ["Libiconv_jll"] git-tree-sha1 = "b765e46ba27ecf6b44faf70df40c57aa3a547dcb" @@ -1961,6 +1936,10 @@ version = "0.7.3" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" + [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" @@ -1968,7 +1947,7 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "7.2.1+1" +version = "7.7.0+0" [[deps.SymbolicIndexingInterface]] deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] @@ -2013,12 +1992,7 @@ version = "0.1.1" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.ThreadingUtilities]] -deps = ["ManualMemory"] -git-tree-sha1 = "d969183d3d244b6c33796b5ed01ab97328f2db85" -uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" -version = "0.5.5" +version = "1.11.0" [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] @@ -2051,9 +2025,11 @@ version = "1.6.1" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +version = "1.11.0" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +version = "1.11.0" [[deps.UnicodeFun]] deps = ["REPL"] @@ -2169,9 +2145,9 @@ version = "0.9.12+0" [[deps.Xorg_libpciaccess_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "4909eb8f1cbf6bd4b1c30dd18b2ead9019ef2fad" +git-tree-sha1 = "58972370b81423fc546c56a60ed1a009450177c3" uuid = "a65dc6b1-eb27-53a1-bb3e-dea574b5389e" -version = "0.18.1+0" +version = "0.19.0+0" [[deps.Xorg_libxcb_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXau_jll", "Xorg_libXdmcp_jll"] @@ -2229,9 +2205,9 @@ version = "1.4.7+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "00af7ebdc563c9217ecc67776d1bbf037dbcebf4" +git-tree-sha1 = "429722587208f02b1cecbddcd20133df2f1ed796" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.44.0+0" +version = "2.47.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2282,9 +2258,9 @@ version = "0.61.1+0" [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" +git-tree-sha1 = "850b06095ee71f0135d644ffd8a52850699581ed" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.13.1+0" +version = "3.13.3+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] @@ -2329,9 +2305,9 @@ version = "1.28.1+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "e2a7072fc0cdd7949528c1455a3e5da4122e1153" +git-tree-sha1 = "e51150d5ab85cee6fc36726850f0e627ad2e4aba" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.56+0" +version = "1.6.58+0" [[deps.libsodium_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2360,7 +2336,7 @@ version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.52.0+1" +version = "1.59.0+0" [[deps.oneTBB_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] @@ -2371,7 +2347,7 @@ version = "2022.0.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.6.1+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] diff --git a/benchmarks/StiffDDE/Project.toml b/benchmarks/StiffDDE/Project.toml index 4f44d0f5b..bcd1c0fea 100644 --- a/benchmarks/StiffDDE/Project.toml +++ b/benchmarks/StiffDDE/Project.toml @@ -2,12 +2,20 @@ DDEProblemLibrary = "f42792ee-6ffc-4e2a-ae83-8ee2f22de800" DelayDiffEq = "bcd4f6db-9728-5f36-b5f7-82caef46ccdb" DiffEqDevTools = "f3b72e0c-5b89-59e1-b016-84e28bfd966d" +OrdinaryDiffEqHighOrderRK = "d28bc4f8-55e1-4f49-af69-84c1a99f0f58" +OrdinaryDiffEqLowOrderRK = "1344f307-1e59-4825-a18e-ace9aa3fa4c6" +OrdinaryDiffEqRosenbrock = "43230ef6-c299-4910-a778-202eb28ce4ce" +OrdinaryDiffEqSDIRK = "2d112036-d095-4a1e-ab9a-08536f3ecdbf" Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" SciMLBenchmarks = "31c91b34-3c75-11e9-0341-95557aab0344" [compat] DDEProblemLibrary = "0.1" -DelayDiffEq = "5.37" -DiffEqDevTools = "2.30" +DelayDiffEq = "6" +DiffEqDevTools = "3" +OrdinaryDiffEqHighOrderRK = "2" +OrdinaryDiffEqLowOrderRK = "2" +OrdinaryDiffEqRosenbrock = "2" +OrdinaryDiffEqSDIRK = "2" Plots = "1.5" SciMLBenchmarks = "0.1" diff --git a/benchmarks/StiffODE/Beam.jmd b/benchmarks/StiffODE/Beam.jmd index 42f4967e1..0d08c45da 100644 --- a/benchmarks/StiffODE/Beam.jmd +++ b/benchmarks/StiffODE/Beam.jmd @@ -5,6 +5,8 @@ author: Chris Rackauckas ```julia using OrdinaryDiffEq, DiffEqDevTools, Sundials, Plots, ODEInterfaceDiffEq, LSODA +using OrdinaryDiffEqBDF, OrdinaryDiffEqExtrapolation, OrdinaryDiffEqFIRK, OrdinaryDiffEqRosenbrock, OrdinaryDiffEqSDIRK, OrdinaryDiffEqStabilizedRK +using SciMLLogging using LinearAlgebra, RecursiveFactorization, Polyester, PreallocationTools, OrdinaryDiffEqCore gr() @@ -182,7 +184,7 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>lsoda()), Dict(:alg=>RadauIIA5()), ] -wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` @@ -197,7 +199,7 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>Rodas4()), Dict(:alg=>lsoda()), Dict(:alg=>radau())] -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` @@ -211,7 +213,7 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>ABDF2()), Dict(:alg=>FBDF()), ] -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` @@ -234,7 +236,7 @@ setups = [Dict(:alg=>FBDF()), Dict(:alg=>radau()), Dict(:alg=>lsoda()), ] -wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` @@ -252,7 +254,7 @@ setups = [Dict(:alg=>Kvaerno4()), Dict(:alg=>ImplicitEulerBarycentricExtrapolation()), Dict(:alg=>ImplicitHairerWannerExtrapolation()), ] -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` @@ -286,7 +288,7 @@ setups = [ solnames = ["CVODE_BDF","KenCarp4","Rodas4","Rodas5P","QNDF","lsoda","radau","seulex","ImplEulerExtpl (threaded)", "ImplEulerExtpl (non-threaded)", "ImplEulerBaryExtpl (threaded)","ImplEulerBaryExtpl (non-threaded)","ImplHWExtpl (threaded)","ImplHWExtpl (non-threaded)"] -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), names = solnames,save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp, title = "Implicit Methods: Beam",legend=:outertopleft,size = (1000,500), diff --git a/benchmarks/StiffODE/Bruss.jmd b/benchmarks/StiffODE/Bruss.jmd index 7958cd3a9..3e95044bd 100644 --- a/benchmarks/StiffODE/Bruss.jmd +++ b/benchmarks/StiffODE/Bruss.jmd @@ -8,6 +8,7 @@ using OrdinaryDiffEq, DiffEqDevTools, Sundials, ParameterizedFunctions, Plots, ODEInterfaceDiffEq, LSODA, SparseArrays, LinearSolve, LinearAlgebra, IncompleteLU, AlgebraicMultigrid, Symbolics, ModelingToolkit, RecursiveFactorization +using OrdinaryDiffEqBDF, OrdinaryDiffEqSDIRK gr() const N = 8 @@ -415,13 +416,13 @@ setups = [ Dict(:alg=>KenCarp47(linsolve = UMFPACKFactorization()), :prob_choice => 2), Dict(:alg=>KenCarp47(linsolve = KrylovJL_GMRES())), Dict(:alg=>KenCarp47(linsolve = KrylovJL_GMRES()), :prob_choice => 2), - Dict(:alg=>KenCarp47(linsolve = KrylovJL_GMRES(), precs = incompletelu, concrete_jac = true)), + Dict(:alg=>KenCarp47(linsolve = KrylovJL_GMRES(; precs = incompletelu), concrete_jac = true)), Dict( - :alg=>KenCarp47(linsolve = KrylovJL_GMRES(), precs = incompletelu, concrete_jac = true), + :alg=>KenCarp47(linsolve = KrylovJL_GMRES(; precs = incompletelu), concrete_jac = true), :prob_choice => 2), - Dict(:alg=>KenCarp47(linsolve = KrylovJL_GMRES(), precs = algebraicmultigrid, concrete_jac = true)), + Dict(:alg=>KenCarp47(linsolve = KrylovJL_GMRES(; precs = algebraicmultigrid), concrete_jac = true)), Dict( - :alg=>KenCarp47(linsolve = KrylovJL_GMRES(), precs = algebraicmultigrid, concrete_jac = true), + :alg=>KenCarp47(linsolve = KrylovJL_GMRES(; precs = algebraicmultigrid), concrete_jac = true), :prob_choice => 2)] names = ["KenCarp47 KLU", "KenCarp47 KLU MTK", "KenCarp47 UMFPACK", "KenCarp47 UMFPACK MTK", "KenCarp47 GMRES", diff --git a/benchmarks/StiffODE/E5.jmd b/benchmarks/StiffODE/E5.jmd index 5e615f4e7..93d8cf370 100644 --- a/benchmarks/StiffODE/E5.jmd +++ b/benchmarks/StiffODE/E5.jmd @@ -5,6 +5,8 @@ author: Chris Rackauckas ```julia using OrdinaryDiffEq, DiffEqDevTools, Sundials, Plots, ODEInterfaceDiffEq, LSODA +using OrdinaryDiffEqBDF, OrdinaryDiffEqExtrapolation, OrdinaryDiffEqRosenbrock, OrdinaryDiffEqSDIRK +using SciMLLogging using LinearAlgebra, StaticArrays, RecursiveFactorization, Polyester, OrdinaryDiffEqCore using OrdinaryDiffEqFIRK gr() @@ -100,7 +102,7 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>RadauIIA5()), Dict(:alg=>ROS34PW1a())] wp = WorkPrecisionSet( - probs, abstols, reltols, setups; error_estimate = :l2, verbose = false, dense = false, + probs, abstols, reltols, setups; error_estimate = :l2, verbose = SciMLLogging.None(), dense = false, save_everystep = false, appxsol = test_sol, maxiters = Int(1e5), numruns = 10) plot(wp) ``` @@ -117,7 +119,7 @@ setups = [Dict(:alg=>FBDF()), Dict(:alg=>radau()), Dict(:alg=>RadauIIA5()) ] -wp = WorkPrecisionSet(probs, abstols, reltols, setups; verbose = false, dense = false, +wp = WorkPrecisionSet(probs, abstols, reltols, setups; verbose = SciMLLogging.None(), dense = false, save_everystep = false, appxsol = test_sol, maxiters = Int(1e5), numruns = 10) plot(wp) ``` @@ -143,7 +145,7 @@ setups = [Dict(:alg=>Kvaerno4()), min_order = 3, init_order = 111, threading = OrdinaryDiffEqCore.PolyesterThreads())), Dict(:alg=>ImplicitHairerWannerExtrapolation(min_order = 3, init_order = 11, threading = false)) ] -wp = WorkPrecisionSet(probs, abstols, reltols, setups; verbose = false, dense = false, +wp = WorkPrecisionSet(probs, abstols, reltols, setups; verbose = SciMLLogging.None(), dense = false, save_everystep = false, appxsol = test_sol, maxiters = Int(1e5), numruns = 10) plot(wp) ``` diff --git a/benchmarks/StiffODE/EMEP.jmd b/benchmarks/StiffODE/EMEP.jmd index 06237626a..9fb9e20aa 100644 --- a/benchmarks/StiffODE/EMEP.jmd +++ b/benchmarks/StiffODE/EMEP.jmd @@ -5,6 +5,8 @@ author: Chris Rackauckas ```julia using OrdinaryDiffEq, DiffEqDevTools, Sundials, Plots, ODEInterfaceDiffEq, LSODA +using OrdinaryDiffEqBDF, OrdinaryDiffEqExtrapolation, OrdinaryDiffEqFIRK, OrdinaryDiffEqRosenbrock, OrdinaryDiffEqSDIRK, OrdinaryDiffEqStabilizedRK +using SciMLLogging using LinearAlgebra, RecursiveFactorization, Polyester, PreallocationTools, OrdinaryDiffEqCore gr() @@ -395,7 +397,7 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>lsoda()), Dict(:alg=>RadauIIA5()), ] -wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10, tstops=disc_times) plot(wp) @@ -411,7 +413,7 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>Rodas4()), Dict(:alg=>lsoda()), Dict(:alg=>radau())] -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10, tstops=disc_times) plot(wp) @@ -426,7 +428,7 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>ABDF2()), Dict(:alg=>FBDF()), ] -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10, tstops=disc_times) plot(wp) @@ -450,7 +452,7 @@ setups = [Dict(:alg=>FBDF()), Dict(:alg=>radau()), Dict(:alg=>lsoda()), ] -wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10, tstops=disc_times) plot(wp) @@ -469,7 +471,7 @@ setups = [Dict(:alg=>Kvaerno4()), Dict(:alg=>ImplicitEulerBarycentricExtrapolation()), Dict(:alg=>ImplicitHairerWannerExtrapolation()), ] -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10, tstops=disc_times) plot(wp) @@ -504,7 +506,7 @@ setups = [ solnames = ["CVODE_BDF","KenCarp4","Rodas4","Rodas5P","QNDF","lsoda","radau","seulex","ImplEulerExtpl (threaded)", "ImplEulerExtpl (non-threaded)", "ImplEulerBaryExtpl (threaded)","ImplEulerBaryExtpl (non-threaded)","ImplHWExtpl (threaded)","ImplHWExtpl (non-threaded)"] -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), names = solnames,save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10, tstops=disc_times) diff --git a/benchmarks/StiffODE/HeatingSystem_wpd.jmd b/benchmarks/StiffODE/HeatingSystem_wpd.jmd index fc2c8cf99..c3440c9fb 100644 --- a/benchmarks/StiffODE/HeatingSystem_wpd.jmd +++ b/benchmarks/StiffODE/HeatingSystem_wpd.jmd @@ -18,6 +18,8 @@ This represents a realistic engineering system with multiple time scales, making ```julia using OrdinaryDiffEq, DiffEqDevTools, Sundials, Plots, ODEInterfaceDiffEq, LSODA, LinearSolve +using OrdinaryDiffEqBDF, OrdinaryDiffEqExtrapolation, OrdinaryDiffEqFIRK, OrdinaryDiffEqRosenbrock, OrdinaryDiffEqSDIRK +using SciMLLogging using PreallocationTools gr() using LinearAlgebra, RecursiveFactorization @@ -157,19 +159,19 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>lsoda()), Dict(:alg=>RadauIIA5()), ] -wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` ```julia -wp = WorkPrecisionSet(prob,abstols,reltols,setups;dense = false,verbose = false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups;dense = false,verbose = SciMLLogging.None(), appxsol=test_sol,maxiters=Int(1e5),error_estimate=:l2,numruns=10) plot(wp) ``` ```julia -wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=SciMLLogging.None(), appxsol=test_sol,maxiters=Int(1e5),error_estimate=:L2,numruns=10) plot(wp) ``` @@ -184,19 +186,19 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>Rodas4()), Dict(:alg=>lsoda()), Dict(:alg=>radau())] -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` ```julia -wp = WorkPrecisionSet(prob,abstols,reltols,setups;dense = false,verbose = false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups;dense = false,verbose = SciMLLogging.None(), appxsol=test_sol,maxiters=Int(1e5),error_estimate=:l2,numruns=10) plot(wp) ``` ```julia -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), appxsol=test_sol,maxiters=Int(1e5),error_estimate=:L2,numruns=10) plot(wp) ``` @@ -210,7 +212,7 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>ARKODE()), Dict(:alg=>ARKODE(order=3))] names = ["Rosenbrock23" "KenCarp5" "KenCarp4" "KenCarp3" "ARKODE5" "ARKODE4" "ARKODE3"] -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), names=names,save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` @@ -225,7 +227,7 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>FBDF()), Dict(:alg=>QNDF()), ] -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e5)) plot(wp) ``` @@ -240,7 +242,7 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>FBDF()), Dict(:alg=>QNDF()), ] -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e5)) plot(wp) ``` @@ -265,19 +267,19 @@ setups = [ Dict(:alg=>radau()), Dict(:alg=>lsoda()) ] -wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` ```julia -wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=SciMLLogging.None(), dense=false,appxsol=test_sol,maxiters=Int(1e5),error_estimate=:l2,numruns=10) plot(wp) ``` ```julia -wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=SciMLLogging.None(), appxsol=test_sol,maxiters=Int(1e5),error_estimate=:L2,numruns=10) plot(wp) ``` @@ -297,19 +299,19 @@ setups = [Dict(:alg=>GRK4A()), Dict(:alg=>ImplicitEulerBarycentricExtrapolation()), Dict(:alg=>ImplicitHairerWannerExtrapolation()), ] -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` ```julia -wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=SciMLLogging.None(), dense=false,appxsol=test_sol,maxiters=Int(1e5),error_estimate=:l2,numruns=10) plot(wp) ``` ```julia -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), appxsol=test_sol,maxiters=Int(1e5),error_estimate=:L2,numruns=10) plot(wp) ``` @@ -344,7 +346,7 @@ setups = [ solnames = ["CVODE_BDF","KenCarp4","Rodas4","Rodas5","Rodas5P","QNDF","lsoda","radau","seulex","ImplEulerExtpl (threaded)", "ImplEulerExtpl (non-threaded)", "ImplEulerBaryExtpl (threaded)","ImplEulerBaryExtpl (non-threaded)","ImplHWExtpl (threaded)","ImplHWExtpl (non-threaded)"] -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), names = solnames,save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp, title = "Implicit Methods: Heating System",legend=:outertopleft,size = (1000,500), diff --git a/benchmarks/StiffODE/Hires.jmd b/benchmarks/StiffODE/Hires.jmd index 62fc54005..60e4759e6 100644 --- a/benchmarks/StiffODE/Hires.jmd +++ b/benchmarks/StiffODE/Hires.jmd @@ -6,6 +6,8 @@ author: Chris Rackauckas ```julia using OrdinaryDiffEq, ParameterizedFunctions, Plots, ODEInterfaceDiffEq, LSODA, DiffEqDevTools, Sundials +using OrdinaryDiffEqBDF, OrdinaryDiffEqExponentialRK, OrdinaryDiffEqExtrapolation, OrdinaryDiffEqFIRK, OrdinaryDiffEqRosenbrock, OrdinaryDiffEqSDIRK, OrdinaryDiffEqStabilizedRK +using SciMLLogging using LinearAlgebra, StaticArrays, RecursiveFactorization, Polyester, OrdinaryDiffEqCore gr() #gr(fmt=:png) @@ -93,19 +95,19 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>ROS34PW1a()), Dict(:alg=>lsoda()) ] -wp = WorkPrecisionSet(probs, abstols, reltols, setups; verbose = false, dense = false, +wp = WorkPrecisionSet(probs, abstols, reltols, setups; verbose = SciMLLogging.None(), dense = false, save_everystep = false, appxsol = test_sol, maxiters = Int(1e5), numruns = 10) plot(wp) ``` ```julia -wp = WorkPrecisionSet(probs, abstols, reltols, setups; dense = false, verbose = false, +wp = WorkPrecisionSet(probs, abstols, reltols, setups; dense = false, verbose = SciMLLogging.None(), appxsol = test_sol, maxiters = Int(1e5), error_estimate = :l2) plot(wp) ``` ```julia -wp = WorkPrecisionSet(probs, abstols, reltols, setups; verbose = false, dense = false, +wp = WorkPrecisionSet(probs, abstols, reltols, setups; verbose = SciMLLogging.None(), dense = false, appxsol = test_sol, maxiters = Int(1e5), error_estimate = :L2) plot(wp) ``` @@ -120,19 +122,19 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>KenCarp3()), # Dict(:alg=>SDIRK2()), # Removed because it's bad Dict(:alg=>radau())] -wp = WorkPrecisionSet(probs, abstols, reltols, setups; verbose = false, dense = false, +wp = WorkPrecisionSet(probs, abstols, reltols, setups; verbose = SciMLLogging.None(), dense = false, save_everystep = false, appxsol = test_sol, maxiters = Int(1e5)) plot(wp) ``` ```julia -wp = WorkPrecisionSet(probs, abstols, reltols, setups; dense = false, verbose = false, +wp = WorkPrecisionSet(probs, abstols, reltols, setups; dense = false, verbose = SciMLLogging.None(), appxsol = test_sol, maxiters = Int(1e5), error_estimate = :l2) plot(wp) ``` ```julia -wp = WorkPrecisionSet(probs, abstols, reltols, setups; verbose = false, dense = false, +wp = WorkPrecisionSet(probs, abstols, reltols, setups; verbose = SciMLLogging.None(), dense = false, appxsol = test_sol, maxiters = Int(1e5), error_estimate = :L2) plot(wp) ``` @@ -148,13 +150,13 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>ARKODE()), Dict(:alg=>ARKODE(order = 3))] names = ["Rosenbrock23" "Rosenbrock23 Static" "KenCarp5" "KenCarp4" "KenCarp4 Static" "KenCarp3" "ARKODE5" "ARKODE4" "ARKODE3"] -wp = WorkPrecisionSet(probs, abstols, reltols, setups; verbose = false, dense = false, +wp = WorkPrecisionSet(probs, abstols, reltols, setups; verbose = SciMLLogging.None(), dense = false, names = names, save_everystep = false, appxsol = test_sol, maxiters = Int(1e5)) plot(wp) ``` ```julia -wp = WorkPrecisionSet(probs, abstols, reltols, setups; dense = false, verbose = false, +wp = WorkPrecisionSet(probs, abstols, reltols, setups; dense = false, verbose = SciMLLogging.None(), appxsol = test_sol, maxiters = Int(1e5), error_estimate = :l2) plot(wp) ``` @@ -172,7 +174,7 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>Exprb43()), Dict(:alg=>Exprb32()) ] -wp = WorkPrecisionSet(probs, abstols, reltols, setups; verbose = false, dense = false, +wp = WorkPrecisionSet(probs, abstols, reltols, setups; verbose = SciMLLogging.None(), dense = false, save_everystep = false, appxsol = test_sol, maxiters = Int(1e5)) plot(wp) ``` @@ -200,19 +202,19 @@ setups = [ Dict(:alg=>lsoda()), Dict(:alg=>RadauIIA5()) ] -wp = WorkPrecisionSet(probs, abstols, reltols, setups; verbose = false, dense = false, +wp = WorkPrecisionSet(probs, abstols, reltols, setups; verbose = SciMLLogging.None(), dense = false, save_everystep = false, appxsol = test_sol, maxiters = Int(1e5)) plot(wp) ``` ```julia -wp = WorkPrecisionSet(probs, abstols, reltols, setups; verbose = false, +wp = WorkPrecisionSet(probs, abstols, reltols, setups; verbose = SciMLLogging.None(), dense = false, appxsol = test_sol, maxiters = Int(1e5), error_estimate = :l2) plot(wp) ``` ```julia -wp = WorkPrecisionSet(probs, abstols, reltols, setups; verbose = false, dense = false, +wp = WorkPrecisionSet(probs, abstols, reltols, setups; verbose = SciMLLogging.None(), dense = false, appxsol = test_sol, maxiters = Int(1e5), error_estimate = :L2) plot(wp) ``` @@ -232,19 +234,19 @@ setups = [Dict(:alg=>GRK4A()), Dict(:alg=>ImplicitEulerBarycentricExtrapolation()), Dict(:alg=>ImplicitHairerWannerExtrapolation()) ] -wp = WorkPrecisionSet(probs, abstols, reltols, setups; verbose = false, dense = false, +wp = WorkPrecisionSet(probs, abstols, reltols, setups; verbose = SciMLLogging.None(), dense = false, save_everystep = false, appxsol = test_sol, maxiters = Int(1e5)) plot(wp) ``` ```julia -wp = WorkPrecisionSet(probs, abstols, reltols, setups; verbose = false, +wp = WorkPrecisionSet(probs, abstols, reltols, setups; verbose = SciMLLogging.None(), dense = false, appxsol = test_sol, maxiters = Int(1e5), error_estimate = :l2) plot(wp) ``` ```julia -wp = WorkPrecisionSet(probs, abstols, reltols, setups; verbose = false, dense = false, +wp = WorkPrecisionSet(probs, abstols, reltols, setups; verbose = SciMLLogging.None(), dense = false, appxsol = test_sol, maxiters = Int(1e5), error_estimate = :L2) plot(wp) ``` @@ -260,13 +262,13 @@ setups = [Dict(:alg=>Rodas5()), Dict(:alg=>ARKODE()), Dict(:alg=>ARKODE(order = 3))] names = ["Rodas5" "Rodas5 Static" "KenCarp5" "KenCarp4" "KenCarp4 Static" "KenCarp3" "ARKODE5" "ARKODE4" "ARKODE3"] -wp = WorkPrecisionSet(probs, abstols, reltols, setups; verbose = false, dense = false, +wp = WorkPrecisionSet(probs, abstols, reltols, setups; verbose = SciMLLogging.None(), dense = false, names = names, save_everystep = false, appxsol = test_sol, maxiters = Int(1e5)) plot(wp) ``` ```julia -wp = WorkPrecisionSet(probs, abstols, reltols, setups; verbose = false, +wp = WorkPrecisionSet(probs, abstols, reltols, setups; verbose = SciMLLogging.None(), dense = false, appxsol = test_sol, maxiters = Int(1e5), error_estimate = :l2) plot(wp) ``` @@ -323,7 +325,7 @@ solnames = ["CVODE_BDF", "KenCarp4", "Rodas4", "Rodas4 Static", "Rodas5P", "ImplEulerBaryExtpl (threaded)", "ImplEulerBaryExtpl (non-threaded)", "ImplHWExtpl (threaded)", "ImplHWExtpl (non-threaded)"] -wp = WorkPrecisionSet(probs, abstols, reltols, setups; verbose = false, dense = false, +wp = WorkPrecisionSet(probs, abstols, reltols, setups; verbose = SciMLLogging.None(), dense = false, names = solnames, save_everystep = false, appxsol = test_sol, maxiters = Int(1e5), numruns = 10) plot(wp, title = "Implicit Methods: HIRES", legend = :outertopleft, size = (1000, 500), diff --git a/benchmarks/StiffODE/MKMBatteryChemistry_wpd.jmd b/benchmarks/StiffODE/MKMBatteryChemistry_wpd.jmd index ec27f0ae8..d99f9a3ee 100644 --- a/benchmarks/StiffODE/MKMBatteryChemistry_wpd.jmd +++ b/benchmarks/StiffODE/MKMBatteryChemistry_wpd.jmd @@ -18,6 +18,8 @@ This represents a realistic electrochemical system with multiple time scales and ```julia using OrdinaryDiffEq, DiffEqDevTools, Sundials, Plots, ODEInterfaceDiffEq, LSODA, LinearSolve +using OrdinaryDiffEqBDF, OrdinaryDiffEqExtrapolation, OrdinaryDiffEqFIRK, OrdinaryDiffEqRosenbrock, OrdinaryDiffEqSDIRK +using SciMLLogging using ProfileSVG, BenchmarkTools, Profile gr() # gr(fmt=:png) using LinearAlgebra, StaticArrays, RecursiveFactorization, Polyester, OrdinaryDiffEqCore @@ -264,19 +266,19 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>lsoda()), Dict(:alg=>RadauIIA5()), ] -wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` ```julia -wp = WorkPrecisionSet(prob,abstols,reltols,setups;dense = false,verbose = false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups;dense = false,verbose = SciMLLogging.None(), appxsol=test_sol,maxiters=Int(1e5),error_estimate=:l2,numruns=10) plot(wp) ``` ```julia -wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=SciMLLogging.None(), appxsol=test_sol,maxiters=Int(1e5),error_estimate=:L2,numruns=10) plot(wp) ``` @@ -291,19 +293,19 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>Rodas4()), Dict(:alg=>lsoda()), Dict(:alg=>radau())] -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` ```julia -wp = WorkPrecisionSet(prob,abstols,reltols,setups;dense = false,verbose = false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups;dense = false,verbose = SciMLLogging.None(), appxsol=test_sol,maxiters=Int(1e5),error_estimate=:l2,numruns=10) plot(wp) ``` ```julia -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), appxsol=test_sol,maxiters=Int(1e5),error_estimate=:L2,numruns=10) plot(wp) ``` @@ -317,7 +319,7 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>ARKODE()), Dict(:alg=>ARKODE(order=3))] names = ["Rosenbrock23" "KenCarp5" "KenCarp4" "KenCarp3" "ARKODE5" "ARKODE4" "ARKODE3"] -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), names=names,save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` @@ -332,7 +334,7 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>FBDF()), Dict(:alg=>QNDF()), ] -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e5)) plot(wp) ``` @@ -347,7 +349,7 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>FBDF()), Dict(:alg=>QNDF()), ] -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e5)) plot(wp) ``` @@ -372,19 +374,19 @@ setups = [ Dict(:alg=>radau()), Dict(:alg=>lsoda()) ] -wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` ```julia -wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=SciMLLogging.None(), dense=false,appxsol=test_sol,maxiters=Int(1e5),error_estimate=:l2,numruns=10) plot(wp) ``` ```julia -wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=SciMLLogging.None(), appxsol=test_sol,maxiters=Int(1e5),error_estimate=:L2,numruns=10) plot(wp) ``` @@ -404,19 +406,19 @@ setups = [Dict(:alg=>GRK4A()), Dict(:alg=>ImplicitEulerBarycentricExtrapolation()), Dict(:alg=>ImplicitHairerWannerExtrapolation()), ] -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` ```julia -wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=SciMLLogging.None(), dense=false,appxsol=test_sol,maxiters=Int(1e5),error_estimate=:l2,numruns=10) plot(wp) ``` ```julia -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), appxsol=test_sol,maxiters=Int(1e5),error_estimate=:L2,numruns=10) plot(wp) ``` @@ -451,7 +453,7 @@ setups = [ solnames = ["CVODE_BDF","KenCarp4","Rodas4","Rodas5","Rodas5P","QNDF","lsoda","radau","seulex","ImplEulerExtpl (threaded)", "ImplEulerExtpl (non-threaded)", "ImplEulerBaryExtpl (threaded)","ImplEulerBaryExtpl (non-threaded)","ImplHWExtpl (threaded)","ImplHWExtpl (non-threaded)"] -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), names = solnames,save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp, title = "Implicit Methods: MKM Battery Chemistry",legend=:outertopleft,size = (1000,500), diff --git a/benchmarks/StiffODE/Manifest.toml b/benchmarks/StiffODE/Manifest.toml index 8d84003d3..f7d0ca119 100644 --- a/benchmarks/StiffODE/Manifest.toml +++ b/benchmarks/StiffODE/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.11" +julia_version = "1.11.9" manifest_format = "2.0" -project_hash = "a812fcea91f38514b889d420a9fe35c5b0d877e6" +project_hash = "979fb03c7afc4c876486b3dc9b8be6b7ba0adc57" [[deps.ADTypes]] -git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" +git-tree-sha1 = "bbc22a9a08a0ef6460041086d8a7b27940ed4ffd" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.21.0" +version = "1.22.0" weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] [deps.ADTypes.extensions] @@ -68,9 +68,9 @@ version = "0.1.44" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "35ea197a51ce46fcd01c4a44befce0578a1aaeca" +git-tree-sha1 = "0761717147821d696c9470a7a86364b2fbd22fd8" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.5.0" +version = "4.5.2" weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] @@ -91,7 +91,7 @@ version = "1.1.3" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.ArnoldiMethod]] deps = ["LinearAlgebra", "Random", "StaticArrays"] @@ -101,9 +101,9 @@ version = "0.4.0" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "78b3a7a536b4b0a747a0f296ea77091ca0a9f9a3" +git-tree-sha1 = "54f895554d05c83e3dd59f6a396671dae8999573" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.23.0" +version = "7.24.0" [deps.ArrayInterface.extensions] ArrayInterfaceAMDGPUExt = "AMDGPU" @@ -147,6 +147,7 @@ weakdeps = ["SparseArrays"] [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +version = "1.11.0" [[deps.AxisAlgorithms]] deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] @@ -170,12 +171,13 @@ version = "1.11.0" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.BenchmarkTools]] -deps = ["Compat", "JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"] -git-tree-sha1 = "6876e30dc02dc69f0613cb6ece242144f2ca9e56" +deps = ["Compat", "JSON", "Logging", "PrecompileTools", "Printf", "Profile", "Statistics", "UUIDs"] +git-tree-sha1 = "9670d3febc2b6da60a0ae57846ba74670290653f" uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" -version = "1.7.0" +version = "1.8.0" [[deps.Bessels]] git-tree-sha1 = "4435559dc39793d53a9e3d278e185e920b4619ef" @@ -221,9 +223,9 @@ weakdeps = ["Adapt", "BandedMatrices"] [[deps.BracketingNonlinearSolve]] deps = ["CommonSolve", "ConcreteStructs", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "d9b66401c1fa982c7ca984d0566af5a9b3551420" +git-tree-sha1 = "7ad7171d693ae5552ac43862e7f6b61df4471c2b" uuid = "70df07ce-3d50-431d-a3e7-ca6ddb60ac1e" -version = "1.12.0" +version = "1.12.1" weakdeps = ["ChainRulesCore", "ForwardDiff"] [deps.BracketingNonlinearSolve.extensions] @@ -389,9 +391,9 @@ weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [[deps.ContinuumArrays]] deps = ["AbstractFFTs", "ArrayLayouts", "BandedMatrices", "BlockArrays", "DomainSets", "FillArrays", "InfiniteArrays", "Infinities", "IntervalSets", "LazyArrays", "LinearAlgebra", "QuasiArrays", "StaticArrays"] -git-tree-sha1 = "56c6c3ca955d6233de12d6c0ddb22bbd8a5274c1" +git-tree-sha1 = "bfcafb3f0028fe788b8331a7f0a960a819793314" uuid = "7ae1f121-cc2c-504b-ac30-9b923412ae5c" -version = "0.20.4" +version = "0.20.5" [deps.ContinuumArrays.extensions] ContinuumArraysMakieExt = "Makie" @@ -446,6 +448,7 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" [[deps.Dbus_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] @@ -466,10 +469,10 @@ uuid = "85a47980-9c8c-11e8-2b9f-f7ca1fa99fb4" version = "0.4.6" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "c5fe5125fcba8f98cdc5c7221b6c324883899c07" +deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "2d7ca58e6ce2d1f7a435773d73d111741e283070" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.213.0" +version = "7.1.0" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" @@ -510,9 +513,9 @@ version = "6.213.0" [[deps.DiffEqCallbacks]] deps = ["ConcreteStructs", "DataStructures", "DiffEqBase", "DifferentiationInterface", "LinearAlgebra", "Markdown", "PrecompileTools", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "6578347ab1743b1eed62a83b537bd276a5cc736b" +git-tree-sha1 = "51f445c25b80c26c83c61520cde214adf8c05227" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "4.13.0" +version = "4.17.0" [deps.DiffEqCallbacks.extensions] DiffEqCallbacksFunctorsExt = "Functors" @@ -521,16 +524,16 @@ version = "4.13.0" Functors = "d9f16b24-f501-4c13-a1f2-28368ffc5196" [[deps.DiffEqDevTools]] -deps = ["BracketingNonlinearSolve", "CommonSolve", "DiffEqBase", "DiffEqNoiseProcess", "Distributed", "ExplicitImports", "LinearAlgebra", "Logging", "RecipesBase", "RecursiveArrayTools", "RootedTrees", "SciMLBase", "Statistics", "StructArrays"] -git-tree-sha1 = "85b69022536add40c3ef422f6f2224cd59f65076" +deps = ["DiffEqBase", "DiffEqNoiseProcess", "Distributed", "LinearAlgebra", "Logging", "NLsolve", "RecipesBase", "RecursiveArrayTools", "RootedTrees", "SciMLBase", "Statistics", "StructArrays"] +git-tree-sha1 = "cc290a2fdad4d332ba6a88953eaf5800687ccd49" uuid = "f3b72e0c-5b89-59e1-b016-84e28bfd966d" -version = "2.51.0" +version = "3.0.0" [[deps.DiffEqNoiseProcess]] deps = ["CommonSolve", "DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "PoissonRandom", "QuadGK", "Random", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "feb625b2aa510b7f8aee69d3fc60c1eed53640cc" +git-tree-sha1 = "5b5fe6eb9e994ff0de4e84fe149b03c706fd6403" uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" -version = "5.28.0" +version = "5.31.0" [deps.DiffEqNoiseProcess.extensions] DiffEqNoiseProcessOptimExt = "Optim" @@ -554,9 +557,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +git-tree-sha1 = "d0250552e42bf7cc36479fd38a6e30004c9e8c2b" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.7.16" +version = "0.7.17" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -566,7 +569,7 @@ version = "0.7.16" DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] - DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGPUArraysCoreExt = ["GPUArraysCore", "Adapt"] DifferentiationInterfaceGTPSAExt = "GTPSA" DifferentiationInterfaceMooncakeExt = "Mooncake" DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] @@ -580,6 +583,7 @@ version = "0.7.16" DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] [deps.DifferentiationInterface.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" @@ -616,12 +620,13 @@ weakdeps = ["ChainRulesCore", "SparseArrays"] [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" +git-tree-sha1 = "e421c1938fafab0165b04dc1a9dbe2a26272952c" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.123" +version = "0.25.125" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -675,9 +680,9 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.7" [[deps.EnzymeCore]] -git-tree-sha1 = "24bbb6fc8fb87eb71c1f8d00184a60fc22c63903" +git-tree-sha1 = "c6ee69ee502060982d12dbaaf3d8fcb4e835a0d1" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.8.19" +version = "0.8.20" weakdeps = ["Adapt", "ChainRulesCore"] [deps.EnzymeCore.extensions] @@ -698,15 +703,9 @@ version = "0.1.11" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "27af30de8b5445644e8ffe3bcb0d72049c089cf1" +git-tree-sha1 = "8f05e9a2e7c2e3eb524102bb2926c5743c07fbe1" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.7.3+0" - -[[deps.ExplicitImports]] -deps = ["Markdown", "Pkg", "PrecompileTools", "TOML", "Test"] -git-tree-sha1 = "a8b6c26bf0ea9f8c4bad71e109a5fa64f34be392" -uuid = "7d51a73a-1435-4ff3-83d9-f097790105c7" -version = "1.15.0" +version = "2.8.0+0" [[deps.ExponentialUtilities]] deps = ["Adapt", "ArrayInterface", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "PrecompileTools", "Printf", "SparseArrays", "libblastrampoline_jll"] @@ -736,9 +735,9 @@ version = "0.4.5" [[deps.FFMPEG_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libva_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "66381d7059b5f3f6162f28831854008040a4e905" +git-tree-sha1 = "cac41ca6b2d399adfc95e51240566f8a60a80806" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "8.0.1+1" +version = "8.1.0+0" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "Libdl", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] @@ -748,15 +747,20 @@ version = "1.10.0" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6d6219a004b8cf1e0b4dbe27a2860b8e04eba0be" +git-tree-sha1 = "6866aec60ef98e3164cd8d6855225684207e9dff" uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" -version = "3.3.11+0" +version = "3.3.12+0" [[deps.FastBroadcast]] -deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "ab1b34570bcdf272899062e1a56285a53ecaae08" +deps = ["ArrayInterface", "LinearAlgebra"] +git-tree-sha1 = "7feeed2c9a7fa272189a5561bebf0c4ccaedb6ec" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.3.5" +version = "1.3.2" +weakdeps = ["Polyester", "Static"] + + [deps.FastBroadcast.extensions] + FastBroadcastPolyesterExt = "Polyester" + FastBroadcastStaticExt = "Static" [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" @@ -806,9 +810,9 @@ version = "0.6.4+0" [[deps.FileIO]] deps = ["Pkg", "Requires", "UUIDs"] -git-tree-sha1 = "6522cfb3b8fe97bec632252263057996cbd3de20" +git-tree-sha1 = "8e9c059d6857607253e837730dbf780b6b151acd" uuid = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" -version = "1.18.0" +version = "1.19.0" weakdeps = ["HTTP"] [deps.FileIO.extensions] @@ -816,6 +820,7 @@ weakdeps = ["HTTP"] [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" +version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] @@ -838,9 +843,9 @@ version = "1.8.0" [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "9340ca07ca27093ff68418b7558ca37b05f8aeb1" +git-tree-sha1 = "f7017a4f337f8df189fcce98e32b67a1298a2115" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.29.0" +version = "2.31.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -911,25 +916,35 @@ uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" version = "1.1.3" [[deps.FunctionWrappersWrappers]] -deps = ["FunctionWrappers"] -git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +deps = ["FunctionWrappers", "PrecompileTools", "TruncatedStacktraces"] +git-tree-sha1 = "c1b0c3a166a2a393257aa888787ca817532e14ce" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "0.1.3" +version = "1.8.0" + + [deps.FunctionWrappersWrappers.extensions] + FunctionWrappersWrappersEnzymeExt = ["Enzyme", "EnzymeCore"] + FunctionWrappersWrappersMooncakeExt = "Mooncake" + + [deps.FunctionWrappersWrappers.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" +version = "1.11.0" [[deps.GLFW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] -git-tree-sha1 = "b7bfd56fa66616138dfe5237da4dc13bbd83c67f" +git-tree-sha1 = "9e0fb9e54594c47f278d75063980e43066e26e20" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.4.1+0" +version = "3.4.1+1" [[deps.GMP_jll]] deps = ["Artifacts", "Libdl"] uuid = "781609d7-10c4-51f6-84f2-b8444358ff6d" -version = "6.2.1+6" +version = "6.3.0+0" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -955,15 +970,15 @@ version = "0.73.24+0" [[deps.GenericFFT]] deps = ["AbstractFFTs", "FFTW", "LinearAlgebra", "Reexport"] -git-tree-sha1 = "1bc01f2ea9a0226a60723794ff86b8017739f5d9" +git-tree-sha1 = "5029b303ba330e2c94ea3237b0e20df44aaab75e" uuid = "a8297547-1b15-4a5a-a998-a2ac5f1cef28" -version = "0.1.6" +version = "0.1.7" [[deps.GenericLinearAlgebra]] deps = ["LinearAlgebra", "Printf", "Random", "libblastrampoline_jll"] -git-tree-sha1 = "fc6236b7fbc40bc283e0dc5a84ead1169a6d7dda" +git-tree-sha1 = "6a0335feebe8e2b61242f2b4ec165c1b70b83f8a" uuid = "14197337-ba66-59df-a3e3-ca00e7dcff7a" -version = "0.3.19" +version = "0.4.0" [[deps.GenericSchur]] deps = ["LinearAlgebra", "Printf"] @@ -973,39 +988,39 @@ version = "0.5.6" [[deps.GeometricBase]] deps = ["Unicode"] -git-tree-sha1 = "b857396a9a7e505331637b93ac7bfc895c694a27" +git-tree-sha1 = "d665638665c52e632df5b176f9484116a3b646aa" uuid = "9a0b12b7-583b-4f04-aa1f-d8551b6addc9" -version = "0.12.10" +version = "0.14.3" [[deps.GeometricEquations]] deps = ["GeometricBase", "Parameters", "Random"] -git-tree-sha1 = "5d88e4a1e2fd28d76bb517670b83121e36cf3836" +git-tree-sha1 = "14c89c4fda9200861ad28b3e3523eb26b4baf24c" uuid = "c85262ba-a08a-430a-b926-d29770767bf2" -version = "0.20.5" +version = "0.21.0" [[deps.GeometricIntegrators]] deps = ["CompactBasisFunctions", "Documenter", "GenericLinearAlgebra", "GeometricBase", "GeometricEquations", "GeometricIntegratorsBase", "GeometricSolutions", "LinearAlgebra", "OffsetArrays", "Parameters", "PrettyTables", "ProgressMeter", "QuadratureRules", "Reexport", "RungeKutta", "SharedArrays", "SimpleSolvers", "StaticArrays", "Test"] -git-tree-sha1 = "68b2dcc6d725812cd9f721095d8dc89c5b0f41c0" +git-tree-sha1 = "f3f2ccafacd50eb826711900a5aabeb9414d05b0" uuid = "dcce2d33-59f6-5b8d-9047-0defad88ae06" -version = "0.15.5" +version = "0.16.2" [[deps.GeometricIntegratorsBase]] -deps = ["GeometricBase", "GeometricEquations", "GeometricSolutions", "LinearAlgebra", "OffsetArrays", "SimpleSolvers", "Unicode"] -git-tree-sha1 = "ff81206f8285ce21d1c9a37aba7a3c26be01034c" +deps = ["GeometricBase", "GeometricEquations", "GeometricSolutions", "LinearAlgebra", "OffsetArrays", "Parameters", "SafeTestsets", "SimpleSolvers", "Unicode"] +git-tree-sha1 = "82133dd1775f0d19723a03f8e2590ae41667afe7" uuid = "71212ab4-08a2-48eb-a02b-4cbad0e9c44a" -version = "0.1.11" +version = "0.2.2" [[deps.GeometricIntegratorsDiffEq]] -deps = ["DiffEqBase", "GeometricIntegrators", "Reexport", "SciMLBase"] -git-tree-sha1 = "ef37ccd5d43dd2db13bbcd3177269a3ee40b852b" +deps = ["DiffEqBase", "GeometricIntegrators", "Reexport", "SciMLBase", "SciMLLogging"] +git-tree-sha1 = "d40992a4198c12cb1e14d60ec7f87f571c21a29a" uuid = "5a33fad7-5ce4-5983-9f5d-5f26ceab5c96" -version = "1.1.0" +version = "1.2.0" [[deps.GeometricSolutions]] deps = ["GeometricBase", "GeometricEquations", "LinearAlgebra", "OffsetArrays", "Test"] -git-tree-sha1 = "07ed8f8de9432e5a1cb9826be6118efc99b3af2d" +git-tree-sha1 = "bb685c44a7135204f2781eea6b4f42b92e6b3e5c" uuid = "7843afe4-64f4-4df4-9231-049495c56661" -version = "0.5.13" +version = "0.6.4" [[deps.GettextRuntime_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll"] @@ -1033,9 +1048,9 @@ version = "3.7.0+0" [[deps.Git_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "dc34a3e3d96b4ed305b641e626dc14c12b7824b8" +git-tree-sha1 = "0dd4cfb426924210c8f42742751cbde74b27bfa3" uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb" -version = "2.53.0+0" +version = "2.54.0+0" [[deps.Glib_jll]] deps = ["Artifacts", "GettextRuntime_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] @@ -1120,10 +1135,10 @@ uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" version = "0.1.1" [[deps.ImplicitDiscreteSolve]] -deps = ["DiffEqBase", "OrdinaryDiffEqCore", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SymbolicIndexingInterface", "UnPack"] -git-tree-sha1 = "3e9ef0da0cabc23fc74e24cb233e184023f3b3ce" +deps = ["ConcreteStructs", "DiffEqBase", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "OrdinaryDiffEqCore", "Reexport", "SciMLBase", "SymbolicIndexingInterface"] +git-tree-sha1 = "dc9f649cbcdd4f2b402d7cbbd5cf61517b45ad5a" uuid = "3263718b-31ed-49cf-8a0f-35a466e8af96" -version = "1.2.0" +version = "2.0.0" [[deps.IncompleteLU]] deps = ["LinearAlgebra", "SparseArrays"] @@ -1185,6 +1200,7 @@ version = "2025.2.0+0" [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" +version = "1.11.0" [[deps.Interpolations]] deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] @@ -1262,23 +1278,24 @@ version = "0.2.1" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "b6893345fd6658c8e475d40155789f4860ac3b21" +git-tree-sha1 = "c0c9b76f3520863909825cbecdef58cd63de705a" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.1.4+0" +version = "3.1.5+0" [[deps.JumpProcesses]] deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "PoissonRandom", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "SymbolicIndexingInterface"] -git-tree-sha1 = "310fc6ddd46db8946f988b142fc2821f2f6456ff" +git-tree-sha1 = "2a8e5b9b90ef0da05f61904d0a39a7b1c0a83310" uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" -version = "9.23.1" +version = "9.28.0" [deps.JumpProcesses.extensions] JumpProcessesKernelAbstractionsExt = ["Adapt", "KernelAbstractions"] + JumpProcessesOrdinaryDiffEqCoreExt = "OrdinaryDiffEqCore" [deps.JumpProcesses.weakdeps] Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" - FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + OrdinaryDiffEqCore = "bbf590c4-e513-4bbe-9b18-05decba2e5d8" [[deps.Krylov]] deps = ["LinearAlgebra", "Printf", "SparseArrays"] @@ -1294,9 +1311,9 @@ version = "3.100.3+0" [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "aaafe88dccbd957a8d82f7d05be9b69172e0cee3" +git-tree-sha1 = "17b94ecafcfa45e8360a4fc9ca6b583b049e4e37" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "4.0.1+0" +version = "4.1.0+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1306,9 +1323,9 @@ version = "18.1.8+0" [[deps.LSODA]] deps = ["Compat", "DiffEqBase", "LSODA_jll", "LinearAlgebra", "Parameters", "Printf", "SciMLBase"] -git-tree-sha1 = "ab0f48b894e66e32227cd9f5285139b965f84d1c" +git-tree-sha1 = "0a062653ab0a72c7a04f53f4bd6ca83a180937b4" uuid = "7f56f5a3-f504-529b-bc02-0b1fe5e64312" -version = "0.7.6" +version = "0.7.7" [[deps.LSODA_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1352,9 +1369,9 @@ version = "1.3.0" [[deps.LazyArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "3866a9d344eaee469d764595d4e18d9517f8e631" +git-tree-sha1 = "33b5d8fafb7ab69eca907b359d00d0107feb2cbf" uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "2.9.6" +version = "2.9.7" [deps.LazyArrays.extensions] LazyArraysBandedMatricesExt = "BandedMatrices" @@ -1371,6 +1388,7 @@ version = "2.9.6" [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" +version = "1.11.0" [[deps.LeftChildRightSiblingTrees]] deps = ["AbstractTrees"] @@ -1386,16 +1404,17 @@ version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.4.0+0" +version = "8.6.0+0" [[deps.LibGit2]] deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +version = "1.11.0" [[deps.LibGit2_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.6.4+0" +version = "1.7.2+0" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] @@ -1404,6 +1423,7 @@ version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" +version = "1.11.0" [[deps.Libffi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1425,9 +1445,9 @@ version = "1.18.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "97bbca976196f2a1eb9607131cb108c69ec3f8a6" +git-tree-sha1 = "cc3ad4faf30015a3e8094c9b5b7f19e85bdf2386" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] @@ -1437,15 +1457,15 @@ version = "4.7.2+0" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d0205286d9eceadc518742860bf23f703779a3d6" +git-tree-sha1 = "d620582b1f0cbe2c72dd1d5bd195a9ce73370ab1" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.LineSearch]] deps = ["ADTypes", "CommonSolve", "ConcreteStructs", "FastClosures", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "SciMLBase", "SciMLJacobianOperators", "StaticArraysCore"] -git-tree-sha1 = "9f7253c0574b4b585c8909232adb890930da980a" +git-tree-sha1 = "fd58a77c92e7c8f1db25c9839127d52943a49349" uuid = "87fe0de2-c867-4266-b59a-2f0a94fc965b" -version = "0.1.6" +version = "0.1.9" weakdeps = ["LineSearches"] [deps.LineSearch.extensions] @@ -1453,19 +1473,20 @@ weakdeps = ["LineSearches"] [[deps.LineSearches]] deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Printf"] -git-tree-sha1 = "738bdcacfef25b3a9e4a39c28613717a6b23751e" +git-tree-sha1 = "9ea3422d03222c6de679934d1c08f0a99405aa03" uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.6.0" +version = "7.5.1" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +version = "1.11.0" [[deps.LinearSolve]] deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "35b6d3b3cfa50f97a7e13bfdd3b82d9f9fcb68af" +git-tree-sha1 = "42b5cb44317e89ef75dd841c9c8eba9045bf9ff0" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "3.72.0" +version = "3.75.0" [deps.LinearSolve.extensions] LinearSolveAMDGPUExt = "AMDGPU" @@ -1490,7 +1511,9 @@ version = "3.72.0" LinearSolveKrylovKitExt = "KrylovKit" LinearSolveMetalExt = "Metal" LinearSolveMooncakeExt = "Mooncake" + LinearSolvePETScCSRExt = ["PETSc", "SparseArrays", "SparseMatricesCSR"] LinearSolvePETScExt = ["PETSc", "SparseArrays"] + LinearSolvePETScMPIExt = ["PETSc", "PartitionedArrays", "SparseArrays", "SparseMatricesCSR"] LinearSolveParUExt = ["ParU_jll", "SparseArrays"] LinearSolvePardisoExt = ["Pardiso", "SparseArrays"] LinearSolveRecursiveFactorizationExt = "RecursiveFactorization" @@ -1523,8 +1546,10 @@ version = "3.72.0" PETSc = "ace2c81b-2b5f-4b1e-a30d-d662738edfe0" ParU_jll = "9e0b026c-e8ce-559c-a2c4-6a3d5c955bc9" Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" + PartitionedArrays = "5a9dfac6-5c52-46f7-8278-5e2210713be9" RecursiveFactorization = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseMatricesCSR = "a0a7dd2c-ebf4-11e9-1f05-cf50bc540ca1" Sparspak = "e56a9233-b9d6-4f03-8d0f-1825330902ac" blis_jll = "6136c539-28a5-5bf0-87cc-b183200dce32" @@ -1546,6 +1571,7 @@ version = "0.3.29" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" +version = "1.11.0" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] @@ -1579,7 +1605,7 @@ version = "2025.2.0+0" [[deps.MPFR_jll]] deps = ["Artifacts", "GMP_jll", "Libdl"] uuid = "3a97d323-0669-5f0c-9066-3539efd106a3" -version = "4.2.0+1" +version = "4.2.1+0" [[deps.MacroTools]] git-tree-sha1 = "1e0228a030642014fe5cfe68c2c0a818f9e3f522" @@ -1594,6 +1620,7 @@ version = "0.1.8" [[deps.Markdown]] deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +version = "1.11.0" [[deps.MarkdownAST]] deps = ["AbstractTrees", "Markdown"] @@ -1620,7 +1647,7 @@ version = "1.1.10" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.1010+0" +version = "2.28.6+0" [[deps.Measures]] git-tree-sha1 = "b513cedd20d9c914783d8ad83d08120702bf2c77" @@ -1629,9 +1656,9 @@ version = "0.3.3" [[deps.MethodOfLines]] deps = ["Combinatorics", "DiffEqBase", "DomainSets", "IfElse", "Interpolations", "Latexify", "LinearAlgebra", "ModelingToolkit", "OrdinaryDiffEq", "PDEBase", "PrecompileTools", "RuntimeGeneratedFunctions", "SciMLBase", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics"] -git-tree-sha1 = "19acd88632ec1540b38b8e44148a7e0c11e2f068" +git-tree-sha1 = "9956fdf30e0555a111b6a7f985497fec351b1a08" uuid = "94925ecb-adb7-4558-8ed8-f975c56a0bf4" -version = "0.11.11" +version = "0.11.12" [[deps.Missings]] deps = ["DataAPI"] @@ -1641,12 +1668,13 @@ version = "1.2.0" [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" +version = "1.11.0" [[deps.ModelingToolkit]] -deps = ["ADTypes", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "ConstructionBase", "DataStructures", "DiffEqBase", "DifferentiationInterface", "DocStringExtensions", "FillArrays", "FindFirstFunctions", "ForwardDiff", "Graphs", "InteractiveUtils", "Libdl", "LinearAlgebra", "ModelingToolkitBase", "ModelingToolkitTearing", "Moshi", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "StateSelection", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] -git-tree-sha1 = "a395115299f96212461f045e7619d04c2c9986a2" +deps = ["ADTypes", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "ConstructionBase", "DataStructures", "DiffEqBase", "DifferentiationInterface", "DocStringExtensions", "FillArrays", "ForwardDiff", "Graphs", "InteractiveUtils", "Libdl", "LinearAlgebra", "ModelingToolkitBase", "ModelingToolkitTearing", "Moshi", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "StateSelection", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] +git-tree-sha1 = "8527fee82ed8dc6934827b447b0555674c3ba1be" uuid = "961ee093-0014-501f-94e3-6117800e7a78" -version = "11.19.1" +version = "11.24.1" [deps.ModelingToolkit.extensions] MTKFMIExt = "FMIImport" @@ -1661,10 +1689,10 @@ version = "11.19.1" OrdinaryDiffEqRosenbrock = "43230ef6-c299-4910-a778-202eb28ce4ce" [[deps.ModelingToolkitBase]] -deps = ["ADTypes", "AbstractTrees", "ArrayInterface", "BandedMatrices", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffRules", "DifferentiationInterface", "DocStringExtensions", "DomainSets", "EnumX", "EnzymeCore", "ExprTools", "FillArrays", "FindFirstFunctions", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "ImplicitDiscreteSolve", "InteractiveUtils", "JumpProcesses", "Libdl", "LinearAlgebra", "Moshi", "NaNMath", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Random", "ReadOnlyDicts", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] -git-tree-sha1 = "96449ee10954eaddb9cd47a0262d1c67e88ee853" +deps = ["ADTypes", "AbstractTrees", "ArrayInterface", "BandedMatrices", "BipartiteGraphs", "BlockArrays", "Combinatorics", "CommonSolve", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffRules", "DifferentiationInterface", "DocStringExtensions", "DomainSets", "EnumX", "EnzymeCore", "ExprTools", "FillArrays", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "ImplicitDiscreteSolve", "InteractiveUtils", "JumpProcesses", "Libdl", "LinearAlgebra", "Moshi", "NaNMath", "OffsetArrays", "OrderedCollections", "PreallocationTools", "PrecompileTools", "REPL", "Random", "ReadOnlyDicts", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLPublic", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UnPack"] +git-tree-sha1 = "d52da5508ed6c42b4e7c01356287d7114f3e13db" uuid = "7771a370-6774-4173-bd38-47e70ca0b839" -version = "1.28.0" +version = "1.33.1" [deps.ModelingToolkitBase.extensions] MTKBifurcationKitExt = "BifurcationKit" @@ -1694,9 +1722,9 @@ version = "1.28.0" [[deps.ModelingToolkitTearing]] deps = ["BipartiteGraphs", "CommonSolve", "DocStringExtensions", "Graphs", "LinearAlgebra", "ModelingToolkitBase", "Moshi", "OffsetArrays", "OrderedCollections", "SciMLBase", "Setfield", "SparseArrays", "StateSelection", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "UUIDs"] -git-tree-sha1 = "caa0f038c2ac3b4ece4dc713656199402e75bd50" +git-tree-sha1 = "3ad8028ba31ef212307586416f1b341b5e8d4eb9" uuid = "6bb917b9-1269-42b9-9f7c-b0dca72083ab" -version = "1.12.1" +version = "1.13.3" [[deps.Moshi]] deps = ["ExproniconLite", "Jieko"] @@ -1706,7 +1734,7 @@ version = "0.3.7" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2025.12.2" +version = "2023.12.12" [[deps.MuladdMacro]] git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" @@ -1715,9 +1743,9 @@ version = "0.2.4" [[deps.MultivariatePolynomials]] deps = ["DataStructures", "LinearAlgebra", "MutableArithmetics", "StarAlgebras"] -git-tree-sha1 = "b45f1ed8448ea20885cb4c5029c2a462fe2682bf" +git-tree-sha1 = "4838893d9b035c2f6967c0d533350e1755b58a70" uuid = "102ac46a-7ee4-5c85-9060-abc95bfdeaa3" -version = "0.5.17" +version = "0.5.19" weakdeps = ["ChainRulesCore"] [deps.MultivariatePolynomials.extensions] @@ -1736,10 +1764,16 @@ uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" version = "1.7.1" [[deps.NLSolversBase]] -deps = ["ADTypes", "DifferentiationInterface", "FiniteDiff", "LinearAlgebra"] -git-tree-sha1 = "b3f76b463c7998473062992b246045e6961a074e" +deps = ["ADTypes", "DifferentiationInterface", "Distributed", "FiniteDiff", "ForwardDiff"] +git-tree-sha1 = "25a6638571a902ecfb1ae2a18fc1575f86b1d4df" uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" -version = "8.0.0" +version = "7.10.0" + +[[deps.NLsolve]] +deps = ["Distances", "LineSearches", "LinearAlgebra", "NLSolversBase", "Printf", "Reexport"] +git-tree-sha1 = "019f12e9a1a7880459d0173c182e6a99365d7ac1" +uuid = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" +version = "4.5.1" [[deps.NaNMath]] deps = ["OpenLibm_jll"] @@ -1752,10 +1786,10 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.NonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SciMLLogging", "SimpleNonlinearSolve", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "d27bcf0cebf8786edcc2eaa4455c959e680334e7" +deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SciMLLogging", "Setfield", "SimpleNonlinearSolve", "StaticArraysCore", "SymbolicIndexingInterface"] +git-tree-sha1 = "ae0b0f875e4dfda538ab6977ec7939126ee9a1fe" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "4.16.0" +version = "4.19.0" [deps.NonlinearSolve.extensions] NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" @@ -1785,10 +1819,10 @@ version = "4.16.0" Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" [[deps.NonlinearSolveBase]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "LinearAlgebra", "Markdown", "MaybeInplace", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "9323e063ce69851b28e5c96539b2e2024f9a7e4c" +deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "LogExpFunctions", "Markdown", "MaybeInplace", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] +git-tree-sha1 = "a19a5df29ef2b197499fc631fa1a59385ae15262" uuid = "be0214bd-f91f-a760-ac4e-3421ce2b2da0" -version = "2.11.2" +version = "2.25.0" [deps.NonlinearSolveBase.extensions] NonlinearSolveBaseBandedMatricesExt = "BandedMatrices" @@ -1818,15 +1852,15 @@ version = "2.11.2" [[deps.NonlinearSolveFirstOrder]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConcreteStructs", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLJacobianOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "eea7cbe389b168c77df7ff779fb7277019c685c8" +git-tree-sha1 = "ce68820a4f421fb5bee7ec4dcf875aff33886bfb" uuid = "5959db7a-ea39-4486-b5fe-2dd0bf03d60d" -version = "2.0.0" +version = "2.1.1" [[deps.NonlinearSolveQuasiNewton]] deps = ["ArrayInterface", "CommonSolve", "ConcreteStructs", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLOperators", "StaticArraysCore"] -git-tree-sha1 = "ade27e8e9566b6cec63ee62f6a6650a11cf9a2eb" +git-tree-sha1 = "538432ca1aea8bf63db02929bf870501f8a7c64c" uuid = "9a2c21bd-3a47-402d-9113-8faf9a0ee114" -version = "1.12.0" +version = "1.13.1" weakdeps = ["ForwardDiff"] [deps.NonlinearSolveQuasiNewton.extensions] @@ -1834,9 +1868,9 @@ weakdeps = ["ForwardDiff"] [[deps.NonlinearSolveSpectralMethods]] deps = ["CommonSolve", "ConcreteStructs", "LineSearch", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "eafd027b5cd768f19bb5de76c0e908a9065ddd36" +git-tree-sha1 = "a3781e12becdf0ce5520bd97ec617e879bf4e9f2" uuid = "26075421-4e9a-44e1-8bd1-420ed7ad02b2" -version = "1.6.0" +version = "1.7.1" weakdeps = ["ForwardDiff"] [deps.NonlinearSolveSpectralMethods.extensions] @@ -1849,10 +1883,10 @@ uuid = "54ca160b-1b9f-5127-a996-1867f4bc2a2c" version = "0.5.0" [[deps.ODEInterfaceDiffEq]] -deps = ["Compat", "DataStructures", "DiffEqBase", "FunctionWrappers", "LinearAlgebra", "ODEInterface", "Reexport", "SciMLBase"] -git-tree-sha1 = "7ca947a49a7c51d81169059e9960b248007a8a05" +deps = ["Compat", "DataStructures", "DiffEqBase", "FunctionWrappers", "LinearAlgebra", "ODEInterface", "Reexport", "SciMLBase", "SciMLLogging"] +git-tree-sha1 = "38fb6b73dcc72515c856cdbdcafb6419b5ea25c2" uuid = "09606e27-ecf5-54fc-bb29-004bd9f985bf" -version = "3.17.0" +version = "4.0.0" [[deps.ODEInterface_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -1877,14 +1911,14 @@ version = "1.3.6+0" [[deps.OpenBLAS32_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6065c4cff8fee6c6770b277af45d5082baacdba1" +git-tree-sha1 = "dd0d9979377e43918a80486a562ddedcc6d9bdf3" uuid = "656ef2d0-ae68-5445-9ca0-591084a874a2" -version = "0.3.24+0" +version = "0.3.33+0" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.23+5" +version = "0.3.27+1" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] @@ -1893,9 +1927,9 @@ version = "0.8.5+0" [[deps.OpenSSH_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "OpenSSL_jll", "Zlib_jll"] -git-tree-sha1 = "301412a644646fdc0ad67d0a87487466b491e53d" +git-tree-sha1 = "57baa4b81a24c2910afbb6d853aa0685e4312bf7" uuid = "9bd350c2-7e96-507f-8002-3f2e150b4e1b" -version = "10.2.1+0" +version = "10.3.1+0" [[deps.OpenSSL]] deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "NetworkOptions", "OpenSSL_jll", "Sockets"] @@ -1905,9 +1939,9 @@ version = "1.6.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "c9cbeda6aceffc52d8a0017e71db27c7a7c0beaf" +git-tree-sha1 = "2ac022577e5eac7da040de17776d51bb770cd895" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.5.5+0" +version = "3.5.6+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -1927,202 +1961,111 @@ uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.8.1" [[deps.OrdinaryDiffEq]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FillArrays", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "MacroTools", "MuladdMacro", "NonlinearSolve", "OrdinaryDiffEqAdamsBashforthMoulton", "OrdinaryDiffEqBDF", "OrdinaryDiffEqCore", "OrdinaryDiffEqDefault", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqExplicitRK", "OrdinaryDiffEqExponentialRK", "OrdinaryDiffEqExtrapolation", "OrdinaryDiffEqFIRK", "OrdinaryDiffEqFeagin", "OrdinaryDiffEqFunctionMap", "OrdinaryDiffEqHighOrderRK", "OrdinaryDiffEqIMEXMultistep", "OrdinaryDiffEqLinear", "OrdinaryDiffEqLowOrderRK", "OrdinaryDiffEqLowStorageRK", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqNordsieck", "OrdinaryDiffEqPDIRK", "OrdinaryDiffEqPRK", "OrdinaryDiffEqQPRK", "OrdinaryDiffEqRKN", "OrdinaryDiffEqRosenbrock", "OrdinaryDiffEqSDIRK", "OrdinaryDiffEqSSPRK", "OrdinaryDiffEqStabilizedIRK", "OrdinaryDiffEqStabilizedRK", "OrdinaryDiffEqSymplecticRK", "OrdinaryDiffEqTsit5", "OrdinaryDiffEqVerner", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "Static", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "89172157d16139165d470602f1e552484b357771" +deps = ["ADTypes", "CommonSolve", "DocStringExtensions", "OrdinaryDiffEqBDF", "OrdinaryDiffEqCore", "OrdinaryDiffEqDefault", "OrdinaryDiffEqRosenbrock", "OrdinaryDiffEqTsit5", "OrdinaryDiffEqVerner", "SciMLBase"] +git-tree-sha1 = "4c411ca0fa291015bc4c23058799a7280c4223e4" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.103.0" - -[[deps.OrdinaryDiffEqAdamsBashforthMoulton]] -deps = ["DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqLowOrderRK", "Polyester", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static"] -git-tree-sha1 = "09aae1486c767caa6bce9de892455cbdf5a6fbc8" -uuid = "89bda076-bce5-4f1c-845f-551c83cdda9a" -version = "1.5.0" +version = "7.0.0" [[deps.OrdinaryDiffEqBDF]] -deps = ["ADTypes", "ArrayInterface", "DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqSDIRK", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "ce8db53fd1e4e41c020fd53961e7314f75e4c21c" +deps = ["ADTypes", "ArrayInterface", "DiffEqBase", "FastBroadcast", "LinearAlgebra", "MacroTools", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqSDIRK", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "2a193931b5dc2400f7f4fb7593b23e0aca96a581" uuid = "6ad6398a-0878-4a85-9266-38940aa047c8" -version = "1.10.1" +version = "2.0.0" [[deps.OrdinaryDiffEqCore]] -deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "FastBroadcast", "FastClosures", "FastPower", "FillArrays", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleUnPack", "Static", "StaticArrayInterface", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "4b68f9ca0cfa68cb9ee544df96391d47ca0e62a9" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ConcreteStructs", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "PrecompileTools", "Preferences", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "86c210d134f09139a294f0329006d6cc20275650" uuid = "bbf590c4-e513-4bbe-9b18-05decba2e5d8" -version = "1.36.0" +version = "4.0.0" [deps.OrdinaryDiffEqCore.extensions] - OrdinaryDiffEqCoreEnzymeCoreExt = "EnzymeCore" OrdinaryDiffEqCoreMooncakeExt = "Mooncake" + OrdinaryDiffEqCoreSparseArraysExt = "SparseArrays" [deps.OrdinaryDiffEqCore.weakdeps] - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[deps.OrdinaryDiffEqDefault]] deps = ["ADTypes", "DiffEqBase", "EnumX", "LinearAlgebra", "LinearSolve", "OrdinaryDiffEqBDF", "OrdinaryDiffEqCore", "OrdinaryDiffEqRosenbrock", "OrdinaryDiffEqTsit5", "OrdinaryDiffEqVerner", "PrecompileTools", "Preferences", "Reexport", "SciMLBase"] -git-tree-sha1 = "7d5ddeee97e1bdcc848f1397cbc3d03bd57f33e7" +git-tree-sha1 = "c2ad58656aff6d468109df04a246b018e92b21d8" uuid = "50262376-6c5a-4cf5-baba-aaf4f84d72d7" -version = "1.8.0" +version = "2.1.0" [[deps.OrdinaryDiffEqDifferentiation]] -deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "LinearAlgebra", "LinearSolve", "OrdinaryDiffEqCore", "SciMLBase", "SciMLOperators", "SparseMatrixColorings", "StaticArrayInterface", "StaticArrays"] -git-tree-sha1 = "320b5f3e4e61ca0ad863c63c803f69973ba6efce" +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FiniteDiff", "ForwardDiff", 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"OrdinaryDiffEqCore", "Polyester", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Static", "TruncatedStacktraces"] -git-tree-sha1 = "185578fa7c38119d4318326f9375f1cba0f0ce53" +deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "TruncatedStacktraces"] +git-tree-sha1 = "fb8ae6a290beed2ef61fa2e7571d921e1100c365" uuid = "79d7bb75-1356-48c1-b8c0-6832512096c2" -version = "1.6.0" +version = "2.0.0" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -2131,9 +2074,9 @@ version = "10.42.0+1" [[deps.PDEBase]] deps = ["DomainSets", "ModelingToolkit", "PrecompileTools", "SciMLBase", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics"] -git-tree-sha1 = "cbd53a441ed933eff3bb89c1974b3ac986a378d3" +git-tree-sha1 = "5bc617e9282d047a76990e5fe07cec14a99274ea" uuid = "a7812802-0625-4b9e-961c-d332478797e5" -version = "0.1.22" +version = "0.1.23" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] @@ -2147,15 +2090,15 @@ weakdeps = ["StatsBase"] [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "0662b083e11420952f2e62e17eddae7fc07d5997" +git-tree-sha1 = "58e5ed5e386e156bd93e86b305ebd21ac63d2d04" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" -version = "1.57.0+0" +version = "1.57.1+0" [[deps.ParameterizedFunctions]] deps = ["DataStructures", "DiffEqBase", "DocStringExtensions", "Latexify", "LinearAlgebra", "ModelingToolkit", "ModelingToolkitBase", "Reexport", "SciMLBase", "SymbolicUtils", "Symbolics"] -git-tree-sha1 = "a09136faf71469ce2545949c8466ab46f3878cb7" +git-tree-sha1 = "42fd879e2e662070397bd067a94ce9c98f8353f0" uuid = "65888b18-ceab-5e60-b2b9-181511a3b968" -version = "5.22.0" +version = "5.24.0" [[deps.Parameters]] deps = ["OrderedCollections", "UnPack"] @@ -2165,9 +2108,9 @@ version = "0.12.3" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "7d2f8f21da5db6a806faf7b9b292296da42b2810" +git-tree-sha1 = "5d5e0a78e971354b1c7bff0655d11fdc1b0e12c8" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.3" +version = "2.8.4" [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] @@ -2176,9 +2119,13 @@ uuid = "30392449-352a-5448-841d-b1acce4e97dc" version = "0.44.2+0" [[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.10.0" +version = "1.11.0" +weakdeps = ["REPL"] + + [deps.Pkg.extensions] + REPLExt = "REPL" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -2252,9 +2199,9 @@ version = "4.1.1" [[deps.PreallocationTools]] deps = ["Adapt", "ArrayInterface", "PrecompileTools"] -git-tree-sha1 = "c05b4c6325262152483a1ecb6c69846d2e01727b" +git-tree-sha1 = "e16b73bf892c55d16d53c9c0dbd0fb31cb7e25da" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "0.4.34" +version = "1.2.0" [deps.PreallocationTools.extensions] PreallocationToolsForwardDiffExt = "ForwardDiff" @@ -2299,10 +2246,11 @@ version = "0.5.7" [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" +version = "1.11.0" [[deps.Profile]] -deps = ["Printf"] uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79" +version = "1.11.0" [[deps.ProfileSVG]] deps = ["Colors", "FlameGraphs", "Profile", "UUIDs"] @@ -2371,9 +2319,9 @@ version = "0.1.7" [[deps.QuasiArrays]] deps = ["ArrayLayouts", "DomainSets", "FillArrays", "LazyArrays", "LinearAlgebra", "StaticArrays"] -git-tree-sha1 = "2d7e5e45c17ce9a9ee9d4ef5e304ed3d82f622a8" +git-tree-sha1 = "e95540632f0bc3e7eb35f74c492e98a5124a4622" uuid = "c4ea9172-b204-11e9-377d-29865faadc5c" -version = "0.13.5" +version = "0.13.6" weakdeps = ["SparseArrays", "StatsBase"] [deps.QuasiArrays.extensions] @@ -2381,12 +2329,14 @@ weakdeps = ["SparseArrays", "StatsBase"] QuasiArraysStatsBaseExt = "StatsBase" [[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" +version = "1.11.0" [[deps.Random]] deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +version = "1.11.0" [[deps.Ratios]] deps = ["Requires"] @@ -2434,16 +2384,19 @@ weakdeps = ["FillArrays", "LazyArrays", "LinearAlgebra"] [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "LinearAlgebra", "PrecompileTools", "RecipesBase", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "76a9c4d3f7b256dd34074e714ffe0ced8d3d21de" +git-tree-sha1 = "57b6fb3932fc8d1fc911f840d2c9de5fe3ba5008" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.50.0" +version = "4.3.0" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsCUDAExt = "CUDA" RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsFastBroadcastPolyesterExt = ["FastBroadcast", "Polyester"] RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsKernelAbstractionsExt = "KernelAbstractions" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsMooncakeExt = "Mooncake" RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] RecursiveArrayToolsStatisticsExt = "Statistics" @@ -2453,11 +2406,14 @@ version = "3.50.0" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" @@ -2531,15 +2487,15 @@ version = "0.5.20" [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "7257165d5477fd1025f7cb656019dcb6b0512c38" +git-tree-sha1 = "cfcdc949c4660544ab0fdeed169561cb22f835f4" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.17" +version = "0.5.18" [[deps.SCCNonlinearSolve]] deps = ["CommonSolve", "PrecompileTools", "Reexport", "SciMLBase", "SymbolicIndexingInterface"] -git-tree-sha1 = "922db5c9c2ac78c68ce62edffefc61a3add303a7" +git-tree-sha1 = "521a298294a6fd11068df0148b4d57bb31550453" uuid = "9dfe8606-65a1-4bb3-9748-cb89d1561431" -version = "1.12.0" +version = "1.13.0" weakdeps = ["ChainRulesCore"] [deps.SCCNonlinearSolve.extensions] @@ -2560,11 +2516,16 @@ git-tree-sha1 = "456f610ca2fbd1c14f5fcf31c6bfadc55e7d66e0" uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" version = "0.6.43" +[[deps.SafeTestsets]] +git-tree-sha1 = "81ec49d645af090901120a1542e67ecbbe044db3" +uuid = "1bc83da4-3b8d-516f-aca4-4fe02f6d838f" +version = "0.1.0" + [[deps.SciMLBase]] -deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Moshi", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "bdbc7c751d36fdb104d437361950d884d489af85" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "Random", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] +git-tree-sha1 = "450a8405f96d0a7c6caabed0852def06ba8c6bf1" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.153.1" +version = "3.7.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2572,7 +2533,6 @@ version = "2.153.1" SciMLBaseDistributionsExt = "Distributions" SciMLBaseEnzymeExt = "Enzyme" SciMLBaseForwardDiffExt = "ForwardDiff" - SciMLBaseMLStyleExt = "MLStyle" SciMLBaseMakieExt = "Makie" SciMLBaseMeasurementsExt = "Measurements" SciMLBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" @@ -2592,7 +2552,6 @@ version = "2.153.1" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - MLStyle = "d8e11817-5142-5d16-987a-aa16d5891078" Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" @@ -2613,9 +2572,9 @@ version = "0.1.3" [[deps.SciMLJacobianOperators]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DifferentiationInterface", "FastClosures", "LinearAlgebra", "SciMLBase", "SciMLOperators"] -git-tree-sha1 = "e96d5e96debf7f80a50d0b976a13dea556ccfd3a" +git-tree-sha1 = "7156a5b51cba1bea33a82a036939ead4131f92bc" uuid = "19f34311-ddf3-4b8b-af20-060888a46c0e" -version = "0.1.12" +version = "0.1.13" [[deps.SciMLLogging]] deps = ["Logging", "LoggingExtras", "Preferences"] @@ -2631,9 +2590,9 @@ version = "1.9.1" [[deps.SciMLOperators]] deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra"] -git-tree-sha1 = "234869cf9fee9258a95464b7a7065cc7be84db00" +git-tree-sha1 = "0e34162268883db01c04f988895a80d0659071bb" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "1.16.0" +version = "1.17.0" weakdeps = ["SparseArrays", "StaticArraysCore"] [deps.SciMLOperators.extensions] @@ -2659,6 +2618,7 @@ version = "1.3.0" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" +version = "1.11.0" [[deps.Setfield]] deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] @@ -2669,6 +2629,7 @@ version = "1.1.2" [[deps.SharedArrays]] deps = ["Distributed", "Mmap", "Random", "Serialization"] uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" +version = "1.11.0" [[deps.Showoff]] deps = ["Dates", "Grisu"] @@ -2683,9 +2644,9 @@ version = "1.2.0" [[deps.SimpleNonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "744c3f0fb186ad28376199c1e72ca39d0c614b5d" +git-tree-sha1 = "d688de789b7e643326caf9a1051376dadbcd8873" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "2.11.0" +version = "2.11.1" [deps.SimpleNonlinearSolve.extensions] SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" @@ -2699,9 +2660,9 @@ version = "2.11.0" [[deps.SimpleSolvers]] deps = ["Distances", "ForwardDiff", "GeometricBase", "LinearAlgebra", "NaNMath", "Printf", "StaticArrays", "Test"] -git-tree-sha1 = "4d90dbc866a42227bdd56ffb9724d9708cb6ad24" +git-tree-sha1 = "95dc790396162119341bf006bfd6afd6040c0d82" uuid = "36b790f5-6434-4fbe-b711-1f64a1e2f6a2" -version = "0.7.10" +version = "0.8.0" [[deps.SimpleTraits]] deps = ["InteractiveUtils", "MacroTools"] @@ -2709,13 +2670,9 @@ git-tree-sha1 = "be8eeac05ec97d379347584fa9fe2f5f76795bcb" uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d" version = "0.9.5" -[[deps.SimpleUnPack]] -git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" -uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" -version = "1.1.0" - [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" +version = "1.11.0" [[deps.SortingAlgorithms]] deps = ["DataStructures"] @@ -2726,7 +2683,7 @@ version = "1.2.2" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -version = "1.10.0" +version = "1.11.0" [[deps.SparseBandedMatrices]] deps = ["LinearAlgebra", "PrecompileTools"] @@ -2736,22 +2693,25 @@ version = "1.3.0" [[deps.SparseMatrixColorings]] deps = ["ADTypes", "DocStringExtensions", "LinearAlgebra", "PrecompileTools", "Random", "SparseArrays"] -git-tree-sha1 = "1c1be8c6fdfaf9b6c9e156c509e672953b8e6af7" +git-tree-sha1 = "f63d76c7b7c329cf11badd564fd8ba877b09c3fe" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.4.26" +version = "0.4.27" [deps.SparseMatrixColorings.extensions] - SparseMatrixColoringsCUDAExt = "CUDA" + SparseMatrixColoringsCUDAExt = ["CUDA", "cuSPARSE"] SparseMatrixColoringsCliqueTreesExt = "CliqueTrees" SparseMatrixColoringsColorsExt = "Colors" + SparseMatrixColoringsGPUArraysExt = "GPUArrays" SparseMatrixColoringsJuMPExt = ["JuMP", "MathOptInterface"] [deps.SparseMatrixColorings.weakdeps] CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" + GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" JuMP = "4076af6c-e467-56ae-b986-b466b2749572" MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" + cuSPARSE = "b26da814-b3bc-49ef-b0ee-c816305aa060" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -2777,9 +2737,9 @@ version = "0.3.0" [[deps.StateSelection]] deps = ["BipartiteGraphs", "DocStringExtensions", "FindFirstFunctions", "Graphs", "LinearAlgebra", "OrderedCollections", "Setfield", "SparseArrays"] -git-tree-sha1 = "a09c34b564f56f689f42f50e97c3a8dae35344ad" +git-tree-sha1 = "824641f6d414f0885200e034e3853c3c2f61ac43" uuid = "64909d44-ed92-46a8-bbd9-f047dfbdc84b" -version = "1.9.1" +version = "1.9.2" [deps.StateSelection.extensions] StateSelectionDeepDiffsExt = "DeepDiffs" @@ -2789,15 +2749,15 @@ version = "1.9.1" [[deps.Static]] deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools", "SciMLPublic"] -git-tree-sha1 = "49440414711eddc7227724ae6e570c7d5559a086" +git-tree-sha1 = "bb072715f158b59ad8819ff80da5ffa90cce6ceb" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.3.1" +version = "1.4.0" [[deps.StaticArrayInterface]] deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "SciMLPublic", "Static"] -git-tree-sha1 = "aa1ea41b3d45ac449d10477f65e2b40e3197a0d2" +git-tree-sha1 = "2a635e15d5035c53b345077c947f31ff91744078" uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.9.0" +version = "1.10.0" weakdeps = ["OffsetArrays", "StaticArrays"] [deps.StaticArrayInterface.extensions] @@ -2821,9 +2781,14 @@ uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" version = "1.4.4" [[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] +deps = ["LinearAlgebra"] +git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.10.0" +version = "1.11.1" +weakdeps = ["SparseArrays"] + + [deps.Statistics.extensions] + SparseArraysExt = ["SparseArrays"] [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -2850,9 +2815,9 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] [[deps.StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "83151ba8065a73f53ca2ae98bc7274d817aa30f2" +git-tree-sha1 = "5316097111523c9a970596a5b33cfea5f92e8581" uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.5.8" +version = "0.5.9" [[deps.StringEncodings]] deps = ["Libiconv_jll"] @@ -2887,26 +2852,30 @@ version = "0.7.3" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" + [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse32_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "94fcd6e398534febe67795e7df45c76aa3c34851" +deps = ["Artifacts", "JLLWrappers", "Libdl", "libblastrampoline_jll"] +git-tree-sha1 = "1d43a4874b879f381b8a3a978f0ebe837cfd0922" uuid = "ca45d3f4-326b-53b0-9957-23b75aacb3f2" -version = "5.10.1+0" +version = "7.12.1+0" [[deps.SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "7.2.1+1" +version = "7.7.0+0" [[deps.Sundials]] -deps = ["Accessors", "ArrayInterface", "CEnum", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "LinearSolve", "Logging", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SparseArrays", "Sundials_jll", "SymbolicIndexingInterface"] -git-tree-sha1 = "2d27edb89b7c555a57b8f22bfde92d6828d11cee" +deps = ["Accessors", "ArrayInterface", "CEnum", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "LinearSolve", "Logging", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLLogging", "SparseArrays", "Sundials_jll", "SymbolicIndexingInterface"] +git-tree-sha1 = "4853f12fa4333ab235d939a6d38b368d35f2f492" uuid = "c3572dad-4567-51f8-b174-8c6c989267f4" -version = "5.1.0" +version = "6.1.0" [[deps.Sundials_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "OpenBLAS32_jll", "SuiteSparse32_jll"] @@ -2932,9 +2901,9 @@ version = "1.1.0" [[deps.SymbolicUtils]] deps = ["AbstractTrees", "ArrayInterface", "Combinatorics", "ConstructionBase", "DataStructures", "Dictionaries", "DocStringExtensions", "DynamicPolynomials", "EnumX", "ExproniconLite", "Graphs", "LinearAlgebra", "MacroTools", "Moshi", "MultivariatePolynomials", "MutableArithmetics", "NaNMath", "PrecompileTools", "ReadOnlyArrays", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "TaskLocalValues", "TermInterface", "WeakCacheSets"] -git-tree-sha1 = "1f349efacf48e218cd6bd5273c1e82f7728df215" +git-tree-sha1 = "ae8741c34009171ee8e46d5c209cf0a15c469928" uuid = "d1185830-fcd6-423d-90d6-eec64667417b" -version = "4.23.1" +version = "4.26.0" [deps.SymbolicUtils.extensions] SymbolicUtilsChainRulesCoreExt = "ChainRulesCore" @@ -2950,9 +2919,9 @@ version = "4.23.1" [[deps.Symbolics]] deps = ["ADTypes", "AbstractPlutoDingetjes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "Moshi", "MultivariatePolynomials", "MutableArithmetics", "NaNMath", "PrecompileTools", "Preferences", "Primes", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLPublic", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] -git-tree-sha1 = "d319f764960a00a6922168e10a12db90880afb27" +git-tree-sha1 = "85bb4be51a7e90e531b1faa926b9497f436ca535" uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7" -version = "7.18.0" +version = "7.21.0" [deps.Symbolics.extensions] SymbolicsD3TreesExt = "D3Trees" @@ -3022,6 +2991,7 @@ version = "2.0.0" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" +version = "1.11.0" [[deps.ThreadingUtilities]] deps = ["ManualMemory"] @@ -3074,6 +3044,7 @@ version = "1.6.1" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +version = "1.11.0" [[deps.UnPack]] git-tree-sha1 = "387c1f73762231e86e0c9c5443ce3b4a0a9a0c2b" @@ -3082,6 +3053,7 @@ version = "1.0.2" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +version = "1.11.0" [[deps.UnicodeFun]] deps = ["REPL"] @@ -3224,9 +3196,9 @@ version = "0.9.12+0" [[deps.Xorg_libpciaccess_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "4909eb8f1cbf6bd4b1c30dd18b2ead9019ef2fad" +git-tree-sha1 = "58972370b81423fc546c56a60ed1a009450177c3" uuid = "a65dc6b1-eb27-53a1-bb3e-dea574b5389e" -version = "0.18.1+0" +version = "0.19.0+0" [[deps.Xorg_libxcb_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXau_jll", "Xorg_libXdmcp_jll"] @@ -3284,9 +3256,9 @@ version = "1.4.7+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "00af7ebdc563c9217ecc67776d1bbf037dbcebf4" +git-tree-sha1 = "429722587208f02b1cecbddcd20133df2f1ed796" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.44.0+0" +version = "2.47.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -3337,9 +3309,9 @@ version = "0.61.1+0" [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" +git-tree-sha1 = "850b06095ee71f0135d644ffd8a52850699581ed" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.13.1+0" +version = "3.13.3+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] @@ -3384,9 +3356,9 @@ version = "1.28.1+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "e2a7072fc0cdd7949528c1455a3e5da4122e1153" +git-tree-sha1 = "e51150d5ab85cee6fc36726850f0e627ad2e4aba" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.56+0" +version = "1.6.58+0" [[deps.libsodium_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -3415,7 +3387,7 @@ version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.52.0+1" +version = "1.59.0+0" [[deps.oneTBB_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] @@ -3426,7 +3398,7 @@ version = "2022.0.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.6.1+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] diff --git a/benchmarks/StiffODE/MedAkzoNobel.jmd b/benchmarks/StiffODE/MedAkzoNobel.jmd index 90b5cffb9..8142e94b6 100644 --- a/benchmarks/StiffODE/MedAkzoNobel.jmd +++ b/benchmarks/StiffODE/MedAkzoNobel.jmd @@ -5,6 +5,8 @@ author: Chris Rackauckas ```julia using OrdinaryDiffEq, DiffEqDevTools, Sundials, Plots, ODEInterfaceDiffEq, LSODA +using OrdinaryDiffEqBDF, OrdinaryDiffEqExtrapolation, OrdinaryDiffEqFIRK, OrdinaryDiffEqRosenbrock, OrdinaryDiffEqSDIRK, OrdinaryDiffEqStabilizedRK +using SciMLLogging using LinearAlgebra, RecursiveFactorization, SparseArrays, Polyester, OrdinaryDiffEqCore gr() @@ -181,7 +183,7 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>lsoda()), Dict(:alg=>RadauIIA5()), ] -wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` @@ -196,7 +198,7 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>Rodas4()), Dict(:alg=>lsoda()), Dict(:alg=>radau())] -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` @@ -210,7 +212,7 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>ABDF2()), Dict(:alg=>FBDF()), ] -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` @@ -233,7 +235,7 @@ setups = [Dict(:alg=>FBDF()), Dict(:alg=>radau()), Dict(:alg=>lsoda()), ] -wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` @@ -251,7 +253,7 @@ setups = [Dict(:alg=>Kvaerno4()), Dict(:alg=>ImplicitEulerBarycentricExtrapolation()), Dict(:alg=>ImplicitHairerWannerExtrapolation()), ] -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` @@ -285,7 +287,7 @@ setups = [ solnames = ["CVODE_BDF","KenCarp4","Rodas4","Rodas5P","QNDF","lsoda","radau","seulex","ImplEulerExtpl (threaded)", "ImplEulerExtpl (non-threaded)", "ImplEulerBaryExtpl (threaded)","ImplEulerBaryExtpl (non-threaded)","ImplHWExtpl (threaded)","ImplHWExtpl (non-threaded)"] -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), names = solnames,save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp, title = "Implicit Methods: Medical Akzo Nobel",legend=:outertopleft,size = (1000,500), diff --git a/benchmarks/StiffODE/Orego.jmd b/benchmarks/StiffODE/Orego.jmd index b325fff54..8d97e4a26 100644 --- a/benchmarks/StiffODE/Orego.jmd +++ b/benchmarks/StiffODE/Orego.jmd @@ -5,6 +5,8 @@ author: Chris Rackauckas ```julia using OrdinaryDiffEq, DiffEqDevTools, ParameterizedFunctions, Plots, ODEInterfaceDiffEq, LSODA, Sundials +using OrdinaryDiffEqBDF, OrdinaryDiffEqExponentialRK, OrdinaryDiffEqExtrapolation, OrdinaryDiffEqFIRK, OrdinaryDiffEqPDIRK, OrdinaryDiffEqRosenbrock, OrdinaryDiffEqSDIRK, OrdinaryDiffEqStabilizedRK +using SciMLLogging gr() #gr(fmt=:png) using LinearAlgebra, StaticArrays, RecursiveFactorization, Polyester, OrdinaryDiffEqCore @@ -122,19 +124,19 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>ROS34PW1a()), Dict(:alg=>lsoda()), ] -wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=false, dense=false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=SciMLLogging.None(), dense=false, save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` ```julia -wp = WorkPrecisionSet(probs,abstols,reltols,setups;dense = false,verbose=false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups;dense = false,verbose=SciMLLogging.None(), appxsol=test_sol,maxiters=Int(1e5),error_estimate=:l2,numruns=10) plot(wp) ``` ```julia -wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=false, dense=false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=SciMLLogging.None(), dense=false, appxsol=test_sol,maxiters=Int(1e5),error_estimate=:L2,numruns=10) plot(wp) ``` @@ -150,19 +152,19 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>lsoda()), # Dict(:alg=>SDIRK2()), # Removed because it's bad Dict(:alg=>radau())] -wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=false, dense=false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=SciMLLogging.None(), dense=false, save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` ```julia -wp = WorkPrecisionSet(probs,abstols,reltols,setups;dense = false,verbose = false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups;dense = false,verbose = SciMLLogging.None(), appxsol=test_sol,maxiters=Int(1e5),error_estimate=:l2,numruns=10) plot(wp) ``` ```julia -wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=false, dense=false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=SciMLLogging.None(), dense=false, appxsol=test_sol,maxiters=Int(1e5),error_estimate=:L2,numruns=10) plot(wp) ``` @@ -179,7 +181,7 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>ARKODE(nonlinear_convergence_coefficient = 1e-5,order=3)) ] names = ["Rosenbrock23" "Rosenbrock23 Static" "KenCarp5" "KenCarp4" "KenCarp4 Static" "KenCarp3" "ARKODE5" "ARKODE4" "ARKODE3"] -wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=false, dense=false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=SciMLLogging.None(), dense=false, names=names, save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) @@ -208,19 +210,19 @@ setups = [ Dict(:alg=>RadauIIA5()), Dict(:alg=>lsoda()), ] -wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=false, dense=false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=SciMLLogging.None(), dense=false, save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` ```julia -wp = WorkPrecisionSet(probs,abstols,reltols,setups;verbose=false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups;verbose=SciMLLogging.None(), dense=false,appxsol=test_sol,maxiters=Int(1e5),error_estimate=:l2,numruns=10) plot(wp) ``` ```julia -wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=false, dense=false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=SciMLLogging.None(), dense=false, appxsol=test_sol,maxiters=Int(1e5),error_estimate=:L2,numruns=10) plot(wp) ``` @@ -243,19 +245,19 @@ setups = [Dict(:alg=>GRK4A()), Dict(:alg=>ImplicitEulerBarycentricExtrapolation()), Dict(:alg=>ImplicitHairerWannerExtrapolation()), ] -wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=false, dense=false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=SciMLLogging.None(), dense=false, save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` ```julia -wp = WorkPrecisionSet(probs,abstols,reltols,setups;verbose=false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups;verbose=SciMLLogging.None(), dense=false,appxsol=test_sol,maxiters=Int(1e5),error_estimate=:l2,numruns=10) plot(wp) ``` ```julia -wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=false, dense=false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=SciMLLogging.None(), dense=false, appxsol=test_sol,maxiters=Int(1e5),error_estimate=:L2,numruns=10) plot(wp) ``` @@ -310,7 +312,7 @@ setups = [ solnames = ["CVODE_BDF","KenCarp4","Rodas4","Rodas4 Static","Rodas5P","Rodas5P Static","QNDF","lsoda","radau","seulex","ImplEulerExtpl (threaded)", "ImplEulerExtpl (non-threaded)", "ImplEulerBaryExtpl (threaded)","ImplEulerBaryExtpl (non-threaded)","ImplHWExtpl (threaded)","ImplHWExtpl (non-threaded)"] -wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=false, dense=false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=SciMLLogging.None(), dense=false, names = solnames,save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp, title = "Implicit Methods: OREGO",legend=:outertopleft,size = (1000,500), diff --git a/benchmarks/StiffODE/Pollution.jmd b/benchmarks/StiffODE/Pollution.jmd index 70d89f1f8..8cd294a4d 100644 --- a/benchmarks/StiffODE/Pollution.jmd +++ b/benchmarks/StiffODE/Pollution.jmd @@ -5,6 +5,8 @@ author: Chris Rackauckas ```julia using OrdinaryDiffEq, DiffEqDevTools, Sundials, ParameterizedFunctions, Plots, ODEInterfaceDiffEq, LSODA, LinearSolve +using OrdinaryDiffEqBDF, OrdinaryDiffEqExponentialRK, OrdinaryDiffEqExtrapolation, OrdinaryDiffEqFIRK, OrdinaryDiffEqRosenbrock, OrdinaryDiffEqSDIRK, OrdinaryDiffEqStabilizedRK +using SciMLLogging using ProfileSVG, BenchmarkTools, Profile gr() # gr(fmt=:png) using LinearAlgebra, RecursiveFactorization, Polyester, OrdinaryDiffEqCore @@ -272,19 +274,19 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>lsoda()), Dict(:alg=>RadauIIA5()), ] -wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` ```julia -wp = WorkPrecisionSet(prob,abstols,reltols,setups;dense = false,verbose = false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups;dense = false,verbose = SciMLLogging.None(), appxsol=test_sol,maxiters=Int(1e5),error_estimate=:l2,numruns=10) plot(wp) ``` ```julia -wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=SciMLLogging.None(), appxsol=test_sol,maxiters=Int(1e5),error_estimate=:L2,numruns=10) plot(wp) ``` @@ -299,19 +301,19 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>Rodas4()), Dict(:alg=>lsoda()), Dict(:alg=>radau())] -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` ```julia -wp = WorkPrecisionSet(prob,abstols,reltols,setups;dense = false,verbose = false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups;dense = false,verbose = SciMLLogging.None(), appxsol=test_sol,maxiters=Int(1e5),error_estimate=:l2,numruns=10) plot(wp) ``` ```julia -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), appxsol=test_sol,maxiters=Int(1e5),error_estimate=:L2,numruns=10) plot(wp) ``` @@ -325,7 +327,7 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>ARKODE()), Dict(:alg=>ARKODE(order=3))] names = ["Rosenbrock23" "KenCarp5" "KenCarp4" "KenCarp3" "ARKODE5" "ARKODE4" "ARKODE3"] -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), names=names,save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` @@ -343,7 +345,7 @@ setups = [Dict(:alg=>Rosenbrock23()), #Dict(:alg=>Exprb43()), #matrix contains Infs or NaNs #Dict(:alg=>Exprb32()), #matrix contains Infs or NaNs ] -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e5)) plot(wp) ``` @@ -360,7 +362,7 @@ setups = [Dict(:alg=>Rosenbrock23()), #Dict(:alg=>Exprb43()), #matrix contains Infs or NaNs #Dict(:alg=>Exprb32()), #matrix contains Infs or NaNs ] -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e5)) plot(wp) ``` @@ -385,19 +387,19 @@ setups = [ Dict(:alg=>radau()), Dict(:alg=>lsoda()) ] -wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` ```julia -wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=SciMLLogging.None(), dense=false,appxsol=test_sol,maxiters=Int(1e5),error_estimate=:l2,numruns=10) plot(wp) ``` ```julia -wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=SciMLLogging.None(), appxsol=test_sol,maxiters=Int(1e5),error_estimate=:L2,numruns=10) plot(wp) ``` @@ -417,19 +419,19 @@ setups = [Dict(:alg=>GRK4A()), Dict(:alg=>ImplicitEulerBarycentricExtrapolation()), Dict(:alg=>ImplicitHairerWannerExtrapolation()), ] -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` ```julia -wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=SciMLLogging.None(), dense=false,appxsol=test_sol,maxiters=Int(1e5),error_estimate=:l2,numruns=10) plot(wp) ``` ```julia -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), appxsol=test_sol,maxiters=Int(1e5),error_estimate=:L2,numruns=10) plot(wp) ``` @@ -477,7 +479,7 @@ setups = [ solnames = ["CVODE_BDF","KenCarp4","Rodas4","Rodas5","Rodas5P","QNDF","lsoda","radau","seulex","ImplEulerExtpl (threaded)", "ImplEulerExtpl (non-threaded)", "ImplEulerBaryExtpl (threaded)","ImplEulerBaryExtpl (non-threaded)","ImplHWExtpl (threaded)","ImplHWExtpl (non-threaded)"] -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), names = solnames,save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp, title = "Implicit Methods: POLLUTION",legend=:outertopleft,size = (1000,500), diff --git a/benchmarks/StiffODE/Project.toml b/benchmarks/StiffODE/Project.toml index fcffe6e49..eabd6c934 100644 --- a/benchmarks/StiffODE/Project.toml +++ b/benchmarks/StiffODE/Project.toml @@ -12,8 +12,15 @@ MethodOfLines = "94925ecb-adb7-4558-8ed8-f975c56a0bf4" ModelingToolkit = "961ee093-0014-501f-94e3-6117800e7a78" ODEInterfaceDiffEq = "09606e27-ecf5-54fc-bb29-004bd9f985bf" OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" +OrdinaryDiffEqBDF = "6ad6398a-0878-4a85-9266-38940aa047c8" OrdinaryDiffEqCore = "bbf590c4-e513-4bbe-9b18-05decba2e5d8" +OrdinaryDiffEqExponentialRK = "e0540318-69ee-4070-8777-9e2de6de23de" +OrdinaryDiffEqExtrapolation = "becaefa8-8ca2-5cf9-886d-c06f3d2bd2c4" OrdinaryDiffEqFIRK = "5960d6e9-dd7a-4743-88e7-cf307b64f125" +OrdinaryDiffEqPDIRK = "5dd0a6cf-3d4b-4314-aa06-06d4e299bc89" +OrdinaryDiffEqRosenbrock = "43230ef6-c299-4910-a778-202eb28ce4ce" +OrdinaryDiffEqSDIRK = "2d112036-d095-4a1e-ab9a-08536f3ecdbf" +OrdinaryDiffEqStabilizedRK = "358294b1-0aab-51c3-aafe-ad5ab194a2ad" ParameterizedFunctions = "65888b18-ceab-5e60-b2b9-181511a3b968" Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" @@ -21,6 +28,7 @@ PreallocationTools = "d236fae5-4411-538c-8e31-a6e3d9e00b46" ProfileSVG = "132c30aa-f267-4189-9183-c8a63c7e05e6" RecursiveFactorization = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" SciMLBenchmarks = "31c91b34-3c75-11e9-0341-95557aab0344" +SciMLLogging = "a6db7da4-7206-11f0-1eab-35f2a5dbe1d1" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" @@ -30,7 +38,7 @@ TimerOutputs = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" [compat] AlgebraicMultigrid = "1" BenchmarkTools = "1" -DiffEqDevTools = "2.30" +DiffEqDevTools = "3" DomainSets = "0.7" GeometricIntegratorsDiffEq = "1" IncompleteLU = "0.2" @@ -38,17 +46,25 @@ LSODA = "0.7" LinearSolve = "3" MethodOfLines = "0.11" ModelingToolkit = "11" -ODEInterfaceDiffEq = "3.10" -OrdinaryDiffEq = "6.92" -OrdinaryDiffEqCore = "1" -OrdinaryDiffEqFIRK = "1" +ODEInterfaceDiffEq = "4" +OrdinaryDiffEq = "7" +OrdinaryDiffEqBDF = "2" +OrdinaryDiffEqCore = "4" +OrdinaryDiffEqExponentialRK = "2" +OrdinaryDiffEqExtrapolation = "2" +OrdinaryDiffEqFIRK = "2" +OrdinaryDiffEqPDIRK = "2" +OrdinaryDiffEqRosenbrock = "2" +OrdinaryDiffEqSDIRK = "2" +OrdinaryDiffEqStabilizedRK = "2" ParameterizedFunctions = "5.3" Plots = "1.4" Polyester = "0.7" ProfileSVG = "0.2" RecursiveFactorization = "0.2.23" SciMLBenchmarks = "0.1" +SciMLLogging = "1, 2" StaticArrays = "1" -Sundials = "5" +Sundials = "6" Symbolics = "7" TimerOutputs = "0.5" diff --git a/benchmarks/StiffODE/ROBER.jmd b/benchmarks/StiffODE/ROBER.jmd index 969c7a0b9..f5be4f431 100644 --- a/benchmarks/StiffODE/ROBER.jmd +++ b/benchmarks/StiffODE/ROBER.jmd @@ -5,6 +5,8 @@ author: Chris Rackauckas ```julia using OrdinaryDiffEq, DiffEqDevTools, Sundials, ParameterizedFunctions, Plots, ODEInterfaceDiffEq, LSODA +using OrdinaryDiffEqBDF, OrdinaryDiffEqExponentialRK, OrdinaryDiffEqExtrapolation, OrdinaryDiffEqFIRK, OrdinaryDiffEqPDIRK, OrdinaryDiffEqRosenbrock, OrdinaryDiffEqSDIRK, OrdinaryDiffEqStabilizedRK +using SciMLLogging gr() using LinearAlgebra, StaticArrays, RecursiveFactorization, Polyester, OrdinaryDiffEqCore @@ -133,7 +135,7 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>ROS34PW1a()), ] gr() -wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=false, dense=false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=SciMLLogging.None(), dense=false, save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` @@ -149,7 +151,7 @@ setups = [Dict(:alg=>Rosenbrock23()), # Dict(:alg=>SDIRK2()), # Removed because it's bad Dict(:alg=>radau())] names = ["Rosenbrock23" "Rosenbrock23 Static" "Kvaerno3" "KenCarp4" "TRBDF2" "KenCarp3" "lsoda" "radau"] -wp = WorkPrecisionSet(probs,abstols,reltols,setups;names=names, verbose=false, dense=false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups;names=names, verbose=SciMLLogging.None(), dense=false, save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` @@ -167,7 +169,7 @@ setups = [Dict(:alg=>Rosenbrock23()), ] names = ["Rosenbrock23" "Rosenbrock23 Static" "KenCarp5" "KenCarp4" "KenCarp4 Static" "KenCarp3" "ARKODE5" "ARKODE4" "ARKODE3"] wp = WorkPrecisionSet(probs,abstols,reltols,setups; - names=names, verbose=false, dense=false, + names=names, verbose=SciMLLogging.None(), dense=false, save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` @@ -186,7 +188,7 @@ setups = [Dict(:alg=>Rosenbrock23()), #Dict(:alg=>Exprb43()), #SingularException #Dict(:alg=>Exprb32()), #SingularException ] -wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=false, dense=false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=SciMLLogging.None(), dense=false, save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` @@ -208,7 +210,7 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>ROS34PW1a()), ] gr() -wp = WorkPrecisionSet(probs,abstols,reltols,setups;error_estimate=:l2, verbose=false, dense=false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups;error_estimate=:l2, verbose=SciMLLogging.None(), dense=false, save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` @@ -223,7 +225,7 @@ setups = [Dict(:alg=>Rosenbrock23()), # Dict(:alg=>SDIRK2()), # Removed because it's bad Dict(:alg=>radau())] names = ["Rosenbrock23" "Rosenbrock23 Static" "Kvaerno3" "KenCarp4" "TRBDF2" "KenCarp3" "radau"] -wp = WorkPrecisionSet(probs,abstols,reltols,setups;names=names, verbose=false, dense=false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups;names=names, verbose=SciMLLogging.None(), dense=false, appxsol=test_sol,maxiters=Int(1e5),error_estimate=:l2,numruns=10) plot(wp) ``` @@ -242,7 +244,7 @@ setups = [Dict(:alg=>Rosenbrock23()), #Dict(:alg=>Exprb43()), #SingularException #Dict(:alg=>Exprb32()), #SingularException ] -wp = WorkPrecisionSet(probs,abstols,reltols,setups;verbose=false,error_estimate=:l2, +wp = WorkPrecisionSet(probs,abstols,reltols,setups;verbose=SciMLLogging.None(),error_estimate=:l2, save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` @@ -268,7 +270,7 @@ setups = [#Dict(:alg=>Rodas5()), Dict(:alg=>radau()), Dict(:alg=>RadauIIA5()), ] -wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=false, dense=false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=SciMLLogging.None(), dense=false, save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` @@ -291,7 +293,7 @@ setups = [Dict(:alg=>Kvaerno4()), Dict(:alg=>ImplicitEulerBarycentricExtrapolation()), Dict(:alg=>ImplicitHairerWannerExtrapolation()), ] -wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=false, dense=false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=SciMLLogging.None(), dense=false, save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` @@ -307,7 +309,7 @@ setups = [Dict(:alg=>Rodas4()) Dict(:alg=>Rodas5P()) Dict(:alg=>Rodas5P(), :prob_choice => 2)] names = ["Rodas4" "Rodas4 Static" "Rodas5" "Rodas5 Static" "Rodas5P" "Rodas5P Static"] -wp = WorkPrecisionSet(probs,abstols,reltols,setups;names=names, verbose=false, dense=false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups;names=names, verbose=SciMLLogging.None(), dense=false, save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` @@ -343,7 +345,7 @@ setups = [ solnames = ["CVODE_BDF","KenCarp4","Rodas4","Rodas4 Static","Rodas5P","Rodas5P Static","QNDF","lsoda","radau","seulex","ImplEulerExtpl (threaded)", "ImplEulerExtpl (non-threaded)", "ImplEulerBaryExtpl (threaded)","ImplEulerBaryExtpl (non-threaded)","ImplHWExtpl (threaded)","ImplHWExtpl (non-threaded)"] -wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=false, dense=false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=SciMLLogging.None(), dense=false, names = solnames,save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp, title = "Implicit Methods: ROBER",legend=:outertopleft,size = (1000,500), diff --git a/benchmarks/StiffODE/RingModulator.jmd b/benchmarks/StiffODE/RingModulator.jmd index c0387d774..131af666c 100644 --- a/benchmarks/StiffODE/RingModulator.jmd +++ b/benchmarks/StiffODE/RingModulator.jmd @@ -5,6 +5,8 @@ author: Chris Rackauckas ```julia using OrdinaryDiffEq, DiffEqDevTools, Sundials, Plots, ODEInterfaceDiffEq, LSODA +using OrdinaryDiffEqBDF, OrdinaryDiffEqExponentialRK, OrdinaryDiffEqExtrapolation, OrdinaryDiffEqFIRK, OrdinaryDiffEqRosenbrock, OrdinaryDiffEqSDIRK, OrdinaryDiffEqStabilizedRK +using SciMLLogging using LinearAlgebra, StaticArrays, RecursiveFactorization, Polyester, OrdinaryDiffEqCore gr() @@ -134,7 +136,7 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>RadauIIA5()), Dict(:alg=>ROS34PW1a()), ] -wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e6),numruns=10) plot(wp) ``` @@ -148,7 +150,7 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>lsoda()), Dict(:alg=>radau())] names = ["Rosenbrock23" "Kvaerno3" "KenCarp4" "TRBDF2" "KenCarp3" "lsoda" "radau"] -wp = WorkPrecisionSet(prob,abstols,reltols,setups;names=names, verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups;names=names, verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e6),numruns=10) plot(wp) ``` @@ -162,7 +164,7 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>FBDF()), Dict(:alg=>QNDF()), ] -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e6),numruns=10) plot(wp) ``` @@ -186,7 +188,7 @@ setups = [Dict(:alg=>FBDF()), Dict(:alg=>radau()), Dict(:alg=>RadauIIA5()), ] -wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups;verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e6),numruns=10) plot(wp) ``` @@ -206,7 +208,7 @@ setups = [Dict(:alg=>Kvaerno4()), Dict(:alg=>ImplicitEulerBarycentricExtrapolation()), Dict(:alg=>ImplicitHairerWannerExtrapolation()), ] -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), save_everystep=false,appxsol=test_sol,maxiters=Int(1e6),numruns=10) plot(wp) ``` @@ -240,7 +242,7 @@ setups = [ solnames = ["CVODE_BDF","KenCarp4","Rodas4","Rodas5P","QNDF","lsoda","radau","seulex","ImplEulerExtpl (threaded)", "ImplEulerExtpl (non-threaded)", "ImplEulerBaryExtpl (threaded)","ImplEulerBaryExtpl (non-threaded)","ImplHWExtpl (threaded)","ImplHWExtpl (non-threaded)"] -wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=false, +wp = WorkPrecisionSet(prob,abstols,reltols,setups; verbose=SciMLLogging.None(), names = solnames,save_everystep=false,appxsol=test_sol,maxiters=Int(1e6),numruns=10) plot(wp, title = "Implicit Methods: Ring Modulator",legend=:outertopleft,size = (1000,500), diff --git a/benchmarks/StiffODE/VanDerPol.jmd b/benchmarks/StiffODE/VanDerPol.jmd index 699ac6ba6..43ab9f7c8 100644 --- a/benchmarks/StiffODE/VanDerPol.jmd +++ b/benchmarks/StiffODE/VanDerPol.jmd @@ -5,6 +5,8 @@ author: Chris Rackauckas ```julia using OrdinaryDiffEq, DiffEqDevTools, Sundials, ParameterizedFunctions, Plots, ODEInterfaceDiffEq, LSODA +using OrdinaryDiffEqBDF, OrdinaryDiffEqExponentialRK, OrdinaryDiffEqExtrapolation, OrdinaryDiffEqFIRK, OrdinaryDiffEqRosenbrock, OrdinaryDiffEqSDIRK, OrdinaryDiffEqStabilizedRK +using SciMLLogging gr() using LinearAlgebra, StaticArrays, RecursiveFactorization, Polyester, OrdinaryDiffEqCore @@ -133,7 +135,7 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>Rodas5P()), Dict(:alg=>lsoda()), Dict(:alg=>radau())] -wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=false, dense=false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=SciMLLogging.None(), dense=false, save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),seconds=5) plot(wp) ``` @@ -150,7 +152,7 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>ROS34PW1a()), ] gr() -wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=false, dense=false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=SciMLLogging.None(), dense=false, save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` @@ -166,7 +168,7 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>SDIRK2()), Dict(:alg=>radau())] names = ["Rosenbrock23" "Rosenbrock23 Static" "Kvaerno3" "KenCarp4" "TRBDF2" "KenCarp3" "ARKODE" "SDIRK2" "radau"] -wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=false, dense=false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=SciMLLogging.None(), dense=false, names=names,save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),seconds=5) plot(wp) ``` @@ -182,7 +184,7 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>ARKODE(nonlinear_convergence_coefficient = 1e-6)), Dict(:alg=>ARKODE(nonlinear_convergence_coefficient = 1e-6,order=3))] names = ["Rosenbrock23" "Rosenbrock23 Static" "KenCarp5" "KenCarp4" "KenCarp4 Static" "KenCarp3" "ARKODE5" "ARKODE4" "ARKODE3"] -wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=false, dense=false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=SciMLLogging.None(), dense=false, names=names,save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),seconds=5) plot(wp) ``` @@ -200,7 +202,7 @@ setups = [Dict(:alg=>Rosenbrock23()), #Dict(:alg=>Exprb43()), # Diverges #Dict(:alg=>Exprb32()), # SingularException ] -wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=false, dense=false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=SciMLLogging.None(), dense=false, save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` @@ -225,7 +227,7 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>Rodas5P()), Dict(:alg=>lsoda()), Dict(:alg=>radau())] -wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=false, dense=false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=SciMLLogging.None(), dense=false, error_estimate=:l2,appxsol=test_sol,maxiters=Int(1e5),seconds=5) plot(wp) ``` @@ -242,7 +244,7 @@ setups = [Dict(:alg=>Rosenbrock23()), Dict(:alg=>ROS34PW1a()), ] gr() -wp = WorkPrecisionSet(probs,abstols,reltols,setups;error_estimate=:l2, verbose=false, dense=false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups;error_estimate=:l2, verbose=SciMLLogging.None(), dense=false, save_everystep=false,appxsol=test_sol,maxiters=Int(1e5),numruns=10) plot(wp) ``` @@ -271,7 +273,7 @@ setups = [Dict(:alg=>Rodas3()), Dict(:alg=>ImplicitEulerBarycentricExtrapolation()), Dict(:alg=>ImplicitHairerWannerExtrapolation()), ] -wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=false, dense=false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=SciMLLogging.None(), dense=false, save_everystep=false,appxsol=test_sol,maxiters=Int(1e6),seconds=5) plot(wp) ``` @@ -292,7 +294,7 @@ setups = [Dict(:alg=>Rodas3()), Dict(:alg=>radau()), Dict(:alg=>Rodas5())] names = ["Rodas3" "Kvaerno4" "Kvaerno5" "CVODE_BDF" "KenCarp4" "KenCarp5" "ARKODE" "Rodas4" "Rodas5P" "Rodas5P Static" "radau" "Rodas5"] -wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=false, dense=false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=SciMLLogging.None(), dense=false, names=names,save_everystep=false,appxsol=test_sol,maxiters=Int(1e6),seconds=5) plot(wp) ``` @@ -305,7 +307,7 @@ setups = [Dict(:alg=>Rodas3()), Dict(:alg=>Rodas5()), Dict(:alg=>Rodas5P()), Dict(:alg=>Rodas5P(), :prob_choice => 2)] -wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=false, dense=false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=SciMLLogging.None(), dense=false, save_everystep=false,appxsol=test_sol,maxiters=Int(1e6),seconds=5) plot(wp) ``` @@ -327,7 +329,7 @@ setups = [Dict(:alg=>Rodas3()), Dict(:alg=>lsoda()), Dict(:alg=>RadauIIA5()), Dict(:alg=>Rodas5())] -wp = WorkPrecisionSet(probs,abstols,reltols,setups;error_estimate=:l2, verbose=false, dense=false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups;error_estimate=:l2, verbose=SciMLLogging.None(), dense=false, save_everystep=false,appxsol=test_sol,maxiters=Int(1e6),seconds=5) plot(wp) ``` @@ -345,7 +347,7 @@ setups = [Dict(:alg=>Rodas3()), Dict(:alg=>Rodas5P()), Dict(:alg=>Rodas5P(), :prob_choice => 2)] names = ["Rodas3" "Kvaerno4" "Kvaerno5" "CVODE_BDF" "KenCarp4" "KenCarp5" "Rodas4" "radau" "Rodas5" "Rodas5P" "Rodas5P Static"] -wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=false, dense=false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=SciMLLogging.None(), dense=false, names=names,appxsol=test_sol,maxiters=Int(1e6),error_estimate=:l2,seconds=5) plot(wp) ``` @@ -357,7 +359,7 @@ setups = [Dict(:alg=>CVODE_BDF()), Dict(:alg=>Rodas5()), Dict(:alg=>Rodas5P()), Dict(:alg=>Rodas5P(), :prob_choice => 2)] -wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=false, dense=false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=SciMLLogging.None(), dense=false, appxsol=test_sol,maxiters=Int(1e6),error_estimate=:l2,seconds=5) plot(wp) ``` @@ -375,7 +377,7 @@ setups = [Dict(:alg=>ImplicitHairerWannerExtrapolation()), ] names = ["unthreaded","threaded","Polyester"]; -wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=false, dense=false, +wp = WorkPrecisionSet(probs,abstols,reltols,setups; verbose=SciMLLogging.None(), dense=false, names = names,save_everystep=false,appxsol=test_sol,maxiters=Int(1e5)) plot(wp) ``` diff --git a/benchmarks/StiffSDE/Manifest.toml b/benchmarks/StiffSDE/Manifest.toml index 5ab1c30aa..670492a30 100644 --- a/benchmarks/StiffSDE/Manifest.toml +++ b/benchmarks/StiffSDE/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.11" +julia_version = "1.11.9" manifest_format = "2.0" -project_hash = "e5fa1f74b966c078bbd421b6702813ccaaefdba6" +project_hash = "1a13922c0ac8127eeb4e47e29eb2e50c692ee75a" [[deps.ADTypes]] -git-tree-sha1 = "f7304359109c768cf32dc5fa2d371565bb63b68a" +git-tree-sha1 = "bbc22a9a08a0ef6460041086d8a7b27940ed4ffd" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.21.0" +version = "1.22.0" [deps.ADTypes.extensions] ADTypesChainRulesCoreExt = "ChainRulesCore" @@ -45,9 +45,9 @@ version = "0.1.44" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "35ea197a51ce46fcd01c4a44befce0578a1aaeca" +git-tree-sha1 = "0761717147821d696c9470a7a86364b2fbd22fd8" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.5.0" +version = "4.5.2" weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] @@ -62,7 +62,7 @@ version = "1.1.3" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.ArnoldiMethod]] deps = ["LinearAlgebra", "Random", "StaticArrays"] @@ -72,9 +72,9 @@ version = "0.4.0" [[deps.ArrayInterface]] deps = ["Adapt", "LinearAlgebra"] -git-tree-sha1 = "78b3a7a536b4b0a747a0f296ea77091ca0a9f9a3" +git-tree-sha1 = "54f895554d05c83e3dd59f6a396671dae8999573" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.23.0" +version = "7.24.0" [deps.ArrayInterface.extensions] ArrayInterfaceAMDGPUExt = "AMDGPU" @@ -108,26 +108,22 @@ version = "7.23.0" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +version = "1.11.0" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.BitFlags]] git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" version = "0.1.9" -[[deps.BitTwiddlingConvenienceFunctions]] -deps = ["Static"] -git-tree-sha1 = "f21cfd4950cb9f0587d5067e69405ad2acd27b87" -uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" -version = "0.1.6" - [[deps.BracketingNonlinearSolve]] deps = ["CommonSolve", "ConcreteStructs", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "d9b66401c1fa982c7ca984d0566af5a9b3551420" +git-tree-sha1 = "7ad7171d693ae5552ac43862e7f6b61df4471c2b" uuid = "70df07ce-3d50-431d-a3e7-ca6ddb60ac1e" -version = "1.12.0" +version = "1.12.1" [deps.BracketingNonlinearSolve.extensions] BracketingNonlinearSolveChainRulesCoreExt = ["ChainRulesCore", "ForwardDiff"] @@ -143,24 +139,12 @@ git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" version = "1.0.9+0" -[[deps.CPUSummary]] -deps = ["CpuId", "IfElse", "PrecompileTools", "Preferences", "Static"] -git-tree-sha1 = "f3a21d7fc84ba618a779d1ed2fcca2e682865bab" -uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" -version = "0.2.7" - [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] git-tree-sha1 = "d0efe2c6fdcdaa1c161d206aa8b933788397ec71" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" version = "1.18.6+0" -[[deps.CloseOpenIntervals]] -deps = ["Static", "StaticArrayInterface"] -git-tree-sha1 = "05ba0d07cd4fd8b7a39541e31a7b0254704ea581" -uuid = "fb6a15b2-703c-40df-9091-08a04967cfa9" -version = "0.1.13" - [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" @@ -178,13 +162,11 @@ deps = ["FixedPointNumbers", "Random"] git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" version = "0.12.1" +weakdeps = ["StyledStrings"] [deps.ColorTypes.extensions] StyledStringsExt = "StyledStrings" - [deps.ColorTypes.weakdeps] - StyledStrings = "f489334b-da3d-4c2e-b8f0-e476e12c162b" - [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" @@ -212,11 +194,6 @@ git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.1" -[[deps.CommonWorldInvalidations]] -git-tree-sha1 = "ae52d1c52048455e85a387fbee9be553ec2b68d0" -uuid = "f70d9fcc-98c5-4d4a-abd7-e4cdeebd8ca8" -version = "1.0.0" - [[deps.Compat]] deps = ["TOML", "UUIDs"] git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" @@ -278,12 +255,6 @@ git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" version = "0.6.3" -[[deps.CpuId]] -deps = ["Markdown"] -git-tree-sha1 = "fcbb72b032692610bfbdb15018ac16a36cf2e406" -uuid = "adafc99b-e345-5852-983c-f28acb93d879" -version = "0.3.1" - [[deps.DataAPI]] git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" @@ -303,6 +274,7 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" [[deps.Dbus_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] @@ -317,10 +289,10 @@ uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" version = "1.9.1" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "803d463050fae6121f5d15fd449e9538cb993ad9" +deps = ["ArrayInterface", "BracketingNonlinearSolve", "ConcreteStructs", "DocStringExtensions", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "2d7ca58e6ce2d1f7a435773d73d111741e283070" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.214.1" +version = "7.1.0" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" @@ -361,9 +333,9 @@ version = "6.214.1" [[deps.DiffEqCallbacks]] deps = ["ConcreteStructs", "DataStructures", "DiffEqBase", "DifferentiationInterface", "LinearAlgebra", "Markdown", "PrecompileTools", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "6578347ab1743b1eed62a83b537bd276a5cc736b" +git-tree-sha1 = "51f445c25b80c26c83c61520cde214adf8c05227" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "4.13.0" +version = "4.17.0" [deps.DiffEqCallbacks.extensions] DiffEqCallbacksFunctorsExt = "Functors" @@ -372,16 +344,16 @@ version = "4.13.0" Functors = "d9f16b24-f501-4c13-a1f2-28368ffc5196" [[deps.DiffEqDevTools]] -deps = ["BracketingNonlinearSolve", "CommonSolve", "DiffEqBase", "DiffEqNoiseProcess", "Distributed", "ExplicitImports", "LinearAlgebra", "Logging", "RecipesBase", "RecursiveArrayTools", "RootedTrees", "SciMLBase", "Statistics", "StructArrays"] -git-tree-sha1 = "85b69022536add40c3ef422f6f2224cd59f65076" +deps = ["DiffEqBase", "DiffEqNoiseProcess", "Distributed", "LinearAlgebra", "Logging", "NLsolve", "RecipesBase", "RecursiveArrayTools", "RootedTrees", "SciMLBase", "Statistics", "StructArrays"] +git-tree-sha1 = "cc290a2fdad4d332ba6a88953eaf5800687ccd49" uuid = "f3b72e0c-5b89-59e1-b016-84e28bfd966d" -version = "2.51.0" +version = "3.0.0" [[deps.DiffEqNoiseProcess]] deps = ["CommonSolve", "DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "PoissonRandom", "QuadGK", "Random", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "feb625b2aa510b7f8aee69d3fc60c1eed53640cc" +git-tree-sha1 = "5b5fe6eb9e994ff0de4e84fe149b03c706fd6403" uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" -version = "5.28.0" +version = "5.31.0" [deps.DiffEqNoiseProcess.extensions] DiffEqNoiseProcessOptimExt = "Optim" @@ -405,9 +377,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "7ae99144ea44715402c6c882bfef2adbeadbc4ce" +git-tree-sha1 = "d0250552e42bf7cc36479fd38a6e30004c9e8c2b" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.7.16" +version = "0.7.17" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -417,7 +389,7 @@ version = "0.7.16" DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] - DifferentiationInterfaceGPUArraysCoreExt = "GPUArraysCore" + DifferentiationInterfaceGPUArraysCoreExt = ["GPUArraysCore", "Adapt"] DifferentiationInterfaceGTPSAExt = "GTPSA" DifferentiationInterfaceMooncakeExt = "Mooncake" DifferentiationInterfacePolyesterForwardDiffExt = ["PolyesterForwardDiff", "ForwardDiff", "DiffResults"] @@ -431,6 +403,7 @@ version = "0.7.16" DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] [deps.DifferentiationInterface.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" @@ -453,15 +426,30 @@ version = "0.7.16" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" +[[deps.Distances]] +deps = ["LinearAlgebra", "Statistics", "StatsAPI"] +git-tree-sha1 = "c7e3a542b999843086e2f29dac96a618c105be1d" +uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" +version = "0.10.12" + + [deps.Distances.extensions] + DistancesChainRulesCoreExt = "ChainRulesCore" + DistancesSparseArraysExt = "SparseArrays" + + [deps.Distances.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" +git-tree-sha1 = "e421c1938fafab0165b04dc1a9dbe2a26272952c" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.123" +version = "0.25.125" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -489,9 +477,9 @@ uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.7" [[deps.EnzymeCore]] -git-tree-sha1 = "24bbb6fc8fb87eb71c1f8d00184a60fc22c63903" +git-tree-sha1 = "c6ee69ee502060982d12dbaaf3d8fcb4e835a0d1" uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" -version = "0.8.19" +version = "0.8.20" [deps.EnzymeCore.extensions] AdaptExt = "Adapt" @@ -515,26 +503,15 @@ version = "0.1.11" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "27af30de8b5445644e8ffe3bcb0d72049c089cf1" +git-tree-sha1 = "8f05e9a2e7c2e3eb524102bb2926c5743c07fbe1" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.7.3+0" - -[[deps.ExplicitImports]] -deps = ["Markdown", "Pkg", "PrecompileTools", "TOML", "Test"] -git-tree-sha1 = "a8b6c26bf0ea9f8c4bad71e109a5fa64f34be392" -uuid = "7d51a73a-1435-4ff3-83d9-f097790105c7" -version = "1.15.0" +version = "2.8.0+0" [[deps.ExprTools]] git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" version = "0.1.10" -[[deps.ExproniconLite]] -git-tree-sha1 = "c13f0b150373771b0fdc1713c97860f8df12e6c2" -uuid = "55351af7-c7e9-48d6-89ff-24e801d99491" -version = "0.10.14" - [[deps.FFMPEG]] deps = ["FFMPEG_jll"] git-tree-sha1 = "95ecf07c2eea562b5adbd0696af6db62c0f52560" @@ -543,21 +520,24 @@ version = "0.4.5" [[deps.FFMPEG_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libva_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "66381d7059b5f3f6162f28831854008040a4e905" +git-tree-sha1 = "cac41ca6b2d399adfc95e51240566f8a60a80806" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "8.0.1+1" +version = "8.1.0+0" [[deps.FastBroadcast]] deps = ["ArrayInterface", "LinearAlgebra"] -git-tree-sha1 = "e3e64918b1604ba8b1734c4a27febdfe5d09e235" +git-tree-sha1 = "7feeed2c9a7fa272189a5561bebf0c4ccaedb6ec" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "1.3.1" -weakdeps = ["Polyester", "Static"] +version = "1.3.2" [deps.FastBroadcast.extensions] FastBroadcastPolyesterExt = "Polyester" FastBroadcastStaticExt = "Static" + [deps.FastBroadcast.weakdeps] + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" + Static = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" + [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" @@ -588,6 +568,7 @@ version = "1.3.1" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" +version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] @@ -604,9 +585,9 @@ weakdeps = ["PDMats", "SparseArrays", "StaticArrays", "Statistics"] [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "9340ca07ca27093ff68418b7558ca37b05f8aeb1" +git-tree-sha1 = "f7017a4f337f8df189fcce98e32b67a1298a2115" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.29.0" +version = "2.31.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -666,9 +647,9 @@ version = "1.1.3" [[deps.FunctionWrappersWrappers]] deps = ["FunctionWrappers", "PrecompileTools", "TruncatedStacktraces"] -git-tree-sha1 = "648dc754255ecee39da5a06bd2969bc5a4c360b4" +git-tree-sha1 = "c1b0c3a166a2a393257aa888787ca817532e14ce" uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" -version = "1.2.0" +version = "1.8.0" [deps.FunctionWrappersWrappers.extensions] FunctionWrappersWrappersEnzymeExt = ["Enzyme", "EnzymeCore"] @@ -682,12 +663,13 @@ version = "1.2.0" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" +version = "1.11.0" [[deps.GLFW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] -git-tree-sha1 = "b7bfd56fa66616138dfe5237da4dc13bbd83c67f" +git-tree-sha1 = "9e0fb9e54594c47f278d75063980e43066e26e20" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.4.1+0" +version = "3.4.1+1" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -737,9 +719,9 @@ version = "3.7.0+0" [[deps.Git_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "dc34a3e3d96b4ed305b641e626dc14c12b7824b8" +git-tree-sha1 = "0dd4cfb426924210c8f42742751cbde74b27bfa3" uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb" -version = "2.53.0+0" +version = "2.54.0+0" [[deps.Glib_jll]] deps = ["Artifacts", "GettextRuntime_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] @@ -809,11 +791,6 @@ version = "1.34.4" PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" Revise = "295af30f-e4ad-537b-8983-00126c2a3abe" -[[deps.IfElse]] -git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" -uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" -version = "0.1.1" - [[deps.Inflate]] git-tree-sha1 = "d1b1b796e47d94588b3757fe84fbf65a5ec4a80d" uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9" @@ -828,6 +805,7 @@ version = "2025.2.0+0" [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" +version = "1.11.0" [[deps.InverseFunctions]] git-tree-sha1 = "a779299d77cd080bf77b97535acecd73e1c5e5cb" @@ -867,23 +845,17 @@ git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.4" -[[deps.Jieko]] -deps = ["ExproniconLite"] -git-tree-sha1 = "2f05ed29618da60c06a87e9c033982d4f71d0b6c" -uuid = "ae98c720-c025-4a4a-838c-29b094483192" -version = "0.2.1" - [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "b6893345fd6658c8e475d40155789f4860ac3b21" +git-tree-sha1 = "c0c9b76f3520863909825cbecdef58cd63de705a" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.1.4+0" +version = "3.1.5+0" [[deps.JumpProcesses]] deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "PoissonRandom", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "SymbolicIndexingInterface"] -git-tree-sha1 = "7f745242b714313ec435438a8a38492037efa30e" +git-tree-sha1 = "2a8e5b9b90ef0da05f61904d0a39a7b1c0a83310" uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" -version = "9.25.0" +version = "9.28.0" [deps.JumpProcesses.extensions] JumpProcessesKernelAbstractionsExt = ["Adapt", "KernelAbstractions"] @@ -908,9 +880,9 @@ version = "3.100.3+0" [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "aaafe88dccbd957a8d82f7d05be9b69172e0cee3" +git-tree-sha1 = "17b94ecafcfa45e8360a4fc9ca6b583b049e4e37" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "4.0.1+0" +version = "4.1.0+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -941,15 +913,10 @@ version = "0.16.10" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" tectonic_jll = "d7dd28d6-a5e6-559c-9131-7eb760cdacc5" -[[deps.LayoutPointers]] -deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] -git-tree-sha1 = "a9eaadb366f5493a5654e843864c13d8b107548c" -uuid = "10f19ff3-798f-405d-979b-55457f8fc047" -version = "0.1.17" - [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" +version = "1.11.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] @@ -959,16 +926,17 @@ version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.4.0+0" +version = "8.6.0+0" [[deps.LibGit2]] deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +version = "1.11.0" [[deps.LibGit2_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.6.4+0" +version = "1.7.2+0" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] @@ -977,6 +945,7 @@ version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" +version = "1.11.0" [[deps.Libffi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -998,9 +967,9 @@ version = "1.18.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "97bbca976196f2a1eb9607131cb108c69ec3f8a6" +git-tree-sha1 = "cc3ad4faf30015a3e8094c9b5b7f19e85bdf2386" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] @@ -1010,31 +979,36 @@ version = "4.7.2+0" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d0205286d9eceadc518742860bf23f703779a3d6" +git-tree-sha1 = "d620582b1f0cbe2c72dd1d5bd195a9ce73370ab1" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.LineSearch]] deps = ["ADTypes", "CommonSolve", "ConcreteStructs", "FastClosures", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "SciMLBase", "SciMLJacobianOperators", "StaticArraysCore"] -git-tree-sha1 = "9f7253c0574b4b585c8909232adb890930da980a" +git-tree-sha1 = "fd58a77c92e7c8f1db25c9839127d52943a49349" uuid = "87fe0de2-c867-4266-b59a-2f0a94fc965b" -version = "0.1.6" +version = "0.1.9" +weakdeps = ["LineSearches"] [deps.LineSearch.extensions] LineSearchLineSearchesExt = "LineSearches" - [deps.LineSearch.weakdeps] - LineSearches = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" +[[deps.LineSearches]] +deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Printf"] +git-tree-sha1 = "9ea3422d03222c6de679934d1c08f0a99405aa03" +uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" +version = "7.5.1" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +version = "1.11.0" [[deps.LinearSolve]] deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "OpenBLAS_jll", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "35b6d3b3cfa50f97a7e13bfdd3b82d9f9fcb68af" +git-tree-sha1 = "42b5cb44317e89ef75dd841c9c8eba9045bf9ff0" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "3.72.0" +version = "3.75.0" [deps.LinearSolve.extensions] LinearSolveAMDGPUExt = "AMDGPU" @@ -1059,7 +1033,9 @@ version = "3.72.0" LinearSolveKrylovKitExt = "KrylovKit" LinearSolveMetalExt = "Metal" LinearSolveMooncakeExt = "Mooncake" + LinearSolvePETScCSRExt = ["PETSc", "SparseArrays", "SparseMatricesCSR"] LinearSolvePETScExt = ["PETSc", "SparseArrays"] + LinearSolvePETScMPIExt = ["PETSc", "PartitionedArrays", "SparseArrays", "SparseMatricesCSR"] LinearSolveParUExt = ["ParU_jll", "SparseArrays"] LinearSolvePardisoExt = ["Pardiso", "SparseArrays"] LinearSolveRecursiveFactorizationExt = "RecursiveFactorization" @@ -1092,8 +1068,10 @@ version = "3.72.0" PETSc = "ace2c81b-2b5f-4b1e-a30d-d662738edfe0" ParU_jll = "9e0b026c-e8ce-559c-a2c4-6a3d5c955bc9" Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" + PartitionedArrays = "5a9dfac6-5c52-46f7-8278-5e2210713be9" RecursiveFactorization = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseMatricesCSR = "a0a7dd2c-ebf4-11e9-1f05-cf50bc540ca1" Sparspak = "e56a9233-b9d6-4f03-8d0f-1825330902ac" blis_jll = "6136c539-28a5-5bf0-87cc-b183200dce32" @@ -1115,6 +1093,7 @@ version = "0.3.29" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" +version = "1.11.0" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] @@ -1133,14 +1112,10 @@ git-tree-sha1 = "1e0228a030642014fe5cfe68c2c0a818f9e3f522" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" version = "0.5.16" -[[deps.ManualMemory]] -git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" -uuid = "d125e4d3-2237-4719-b19c-fa641b8a4667" -version = "0.1.8" - [[deps.Markdown]] deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +version = "1.11.0" [[deps.MaybeInplace]] deps = ["ArrayInterface", "LinearAlgebra", "MacroTools"] @@ -1161,7 +1136,7 @@ version = "1.1.10" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.1010+0" +version = "2.28.6+0" [[deps.Measures]] git-tree-sha1 = "b513cedd20d9c914783d8ad83d08120702bf2c77" @@ -1176,16 +1151,11 @@ version = "1.2.0" [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" - -[[deps.Moshi]] -deps = ["ExproniconLite", "Jieko"] -git-tree-sha1 = "53f817d3e84537d84545e0ad749e483412dd6b2a" -uuid = "2e0e35c7-a2e4-4343-998d-7ef72827ed2d" -version = "0.3.7" +version = "1.11.0" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2025.12.2" +version = "2023.12.12" [[deps.MuladdMacro]] git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" @@ -1198,6 +1168,18 @@ git-tree-sha1 = "3cbd5dda543bc59f2e482607ccf84b633724fc32" uuid = "ffc61752-8dc7-55ee-8c37-f3e9cdd09e70" version = "1.0.21" +[[deps.NLSolversBase]] +deps = ["ADTypes", "DifferentiationInterface", "Distributed", "FiniteDiff", "ForwardDiff"] +git-tree-sha1 = "25a6638571a902ecfb1ae2a18fc1575f86b1d4df" +uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" +version = "7.10.0" + +[[deps.NLsolve]] +deps = ["Distances", "LineSearches", "LinearAlgebra", "NLSolversBase", "Printf", "Reexport"] +git-tree-sha1 = "019f12e9a1a7880459d0173c182e6a99365d7ac1" +uuid = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" +version = "4.5.1" + [[deps.NaNMath]] deps = ["OpenLibm_jll"] git-tree-sha1 = "9b8215b1ee9e78a293f99797cd31375471b2bcae" @@ -1210,9 +1192,9 @@ version = "1.2.0" [[deps.NonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SciMLLogging", "Setfield", "SimpleNonlinearSolve", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "373b688150f160b68083733657246532389e4280" +git-tree-sha1 = "ae0b0f875e4dfda538ab6977ec7939126ee9a1fe" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "4.17.0" +version = "4.19.0" [deps.NonlinearSolve.extensions] NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" @@ -1243,9 +1225,9 @@ version = "4.17.0" [[deps.NonlinearSolveBase]] deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "LogExpFunctions", "Markdown", "MaybeInplace", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Setfield", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "f58613b44ce12a3a74be0bc4a865cc1f2e776737" +git-tree-sha1 = "a19a5df29ef2b197499fc631fa1a59385ae15262" uuid = "be0214bd-f91f-a760-ac4e-3421ce2b2da0" -version = "2.22.0" +version = "2.25.0" [deps.NonlinearSolveBase.extensions] NonlinearSolveBaseBandedMatricesExt = "BandedMatrices" @@ -1275,15 +1257,15 @@ version = "2.22.0" [[deps.NonlinearSolveFirstOrder]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConcreteStructs", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLJacobianOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "ae36a13005343aed5e731f146637f61a54702444" +git-tree-sha1 = "ce68820a4f421fb5bee7ec4dcf875aff33886bfb" uuid = "5959db7a-ea39-4486-b5fe-2dd0bf03d60d" -version = "2.1.0" +version = "2.1.1" [[deps.NonlinearSolveQuasiNewton]] deps = ["ArrayInterface", "CommonSolve", "ConcreteStructs", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLOperators", "StaticArraysCore"] -git-tree-sha1 = "2ada8e9892fd60b3f01a4984704d66fca682bd50" +git-tree-sha1 = "538432ca1aea8bf63db02929bf870501f8a7c64c" uuid = "9a2c21bd-3a47-402d-9113-8faf9a0ee114" -version = "1.13.0" +version = "1.13.1" weakdeps = ["ForwardDiff"] [deps.NonlinearSolveQuasiNewton.extensions] @@ -1291,9 +1273,9 @@ weakdeps = ["ForwardDiff"] [[deps.NonlinearSolveSpectralMethods]] deps = ["CommonSolve", "ConcreteStructs", "LineSearch", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] -git-tree-sha1 = "e3e8be34968ad07be8734c3d6e42b3f14218b694" +git-tree-sha1 = "a3781e12becdf0ce5520bd97ec617e879bf4e9f2" uuid = "26075421-4e9a-44e1-8bd1-420ed7ad02b2" -version = "1.7.0" +version = "1.7.1" weakdeps = ["ForwardDiff"] [deps.NonlinearSolveSpectralMethods.extensions] @@ -1308,7 +1290,7 @@ version = "1.3.6+0" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.23+5" +version = "0.3.27+1" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] @@ -1351,10 +1333,10 @@ uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.8.1" [[deps.OrdinaryDiffEqCore]] -deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ConcreteStructs", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "Polyester", "PrecompileTools", "Preferences", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "Static", "StaticArraysCore", "SymbolicIndexingInterface", "TruncatedStacktraces"] -git-tree-sha1 = "b901cac9dae908a96256f5870a2b8ef16e969ea9" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "ConcreteStructs", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappersWrappers", "InteractiveUtils", "LinearAlgebra", "Logging", "MacroTools", "MuladdMacro", "PrecompileTools", "Preferences", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SciMLStructures", "SymbolicIndexingInterface", "TruncatedStacktraces"] +git-tree-sha1 = "86c210d134f09139a294f0329006d6cc20275650" uuid = "bbf590c4-e513-4bbe-9b18-05decba2e5d8" -version = "3.29.0" +version = "4.0.0" [deps.OrdinaryDiffEqCore.extensions] OrdinaryDiffEqCoreMooncakeExt = "Mooncake" @@ -1365,20 +1347,20 @@ version = "3.29.0" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" [[deps.OrdinaryDiffEqDifferentiation]] -deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "LinearAlgebra", "LinearSolve", "OrdinaryDiffEqCore", "SciMLBase", "SciMLOperators", "SparseMatrixColorings", "StaticArrays"] -git-tree-sha1 = "8b18ce8ab49cd04a1443fd63eb569d270a07090c" +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "LinearAlgebra", "LinearSolve", "OrdinaryDiffEqCore", "SciMLBase", "SciMLOperators", "SparseMatrixColorings", "StaticArraysCore"] +git-tree-sha1 = "faf3fe4824557bc72aa126a845586f71d377a70a" uuid = "4302a76b-040a-498a-8c04-15b101fed76b" -version = "2.7.0" +version = "3.0.0" weakdeps = ["SparseArrays"] [deps.OrdinaryDiffEqDifferentiation.extensions] OrdinaryDiffEqDifferentiationSparseArraysExt = "SparseArrays" [[deps.OrdinaryDiffEqNonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "DiffEqBase", "FastBroadcast", "FastClosures", "ForwardDiff", "LinearAlgebra", "LinearSolve", "MuladdMacro", "NonlinearSolve", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "PreallocationTools", "RecursiveArrayTools", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleNonlinearSolve", "SparseArrays", "StaticArrays"] -git-tree-sha1 = "7eabb9877144d3cfc894fee899a76439ee2070de" +deps = ["ADTypes", "ArrayInterface", "DiffEqBase", "FastBroadcast", "FastClosures", "ForwardDiff", "LinearAlgebra", "LinearSolve", "MuladdMacro", "NonlinearSolve", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "PreallocationTools", "RecursiveArrayTools", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleNonlinearSolve", "SparseArrays", "StaticArraysCore"] +git-tree-sha1 = "c3e92bdb7bf16385e6f7b505f78601a2708eff28" uuid = "127b3ac7-2247-4354-8eb6-78cf4e7c58e8" -version = "1.26.0" +version = "2.0.0" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -1397,15 +1379,15 @@ weakdeps = ["StatsBase"] [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "0662b083e11420952f2e62e17eddae7fc07d5997" +git-tree-sha1 = "58e5ed5e386e156bd93e86b305ebd21ac63d2d04" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" -version = "1.57.0+0" +version = "1.57.1+0" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "7d2f8f21da5db6a806faf7b9b292296da42b2810" +git-tree-sha1 = "5d5e0a78e971354b1c7bff0655d11fdc1b0e12c8" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.3" +version = "2.8.4" [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] @@ -1414,9 +1396,13 @@ uuid = "30392449-352a-5448-841d-b1acce4e97dc" version = "0.44.2+0" [[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.10.0" +version = "1.11.0" +weakdeps = ["REPL"] + + [deps.Pkg.extensions] + REPLExt = "REPL" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -1456,18 +1442,6 @@ git-tree-sha1 = "67afbcbe9e184d6729a92a022147ed4cf972ca7b" uuid = "e409e4f3-bfea-5376-8464-e040bb5c01ab" version = "0.4.7" -[[deps.Polyester]] -deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "16bbc30b5ebea91e9ce1671adc03de2832cff552" -uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.19" - -[[deps.PolyesterWeave]] -deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] -git-tree-sha1 = "645bed98cd47f72f67316fd42fc47dee771aefcd" -uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad" -version = "0.2.2" - [[deps.PreallocationTools]] deps = ["Adapt", "ArrayInterface", "PrecompileTools"] git-tree-sha1 = "e16b73bf892c55d16d53c9c0dbd0fb31cb7e25da" @@ -1499,6 +1473,7 @@ version = "1.5.2" [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" +version = "1.11.0" [[deps.PtrArrays]] git-tree-sha1 = "4fbbafbc6251b883f4d2705356f3641f3652a7fe" @@ -1548,12 +1523,14 @@ version = "2.11.3" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" [[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" +version = "1.11.0" [[deps.Random]] deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +version = "1.11.0" [[deps.RecipesBase]] deps = ["PrecompileTools"] @@ -1569,17 +1546,19 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "LinearAlgebra", "PrecompileTools", "RecipesBase", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "d0282d612f22dcad7b81cf487b746e63aa2a6709" +git-tree-sha1 = "57b6fb3932fc8d1fc911f840d2c9de5fe3ba5008" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.54.0" +version = "4.3.0" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsCUDAExt = "CUDA" RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" RecursiveArrayToolsFastBroadcastPolyesterExt = ["FastBroadcast", "Polyester"] RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsKernelAbstractionsExt = "KernelAbstractions" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsMooncakeExt = "Mooncake" RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] RecursiveArrayToolsStatisticsExt = "Statistics" @@ -1589,11 +1568,13 @@ version = "3.54.0" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" @@ -1656,24 +1637,19 @@ version = "0.5.18" [[deps.SDEProblemLibrary]] deps = ["DiffEqBase", "Markdown", "RuntimeGeneratedFunctions", "SciMLBase"] -git-tree-sha1 = "6e69a42c237c381293cda9917deee408a9aa8fbd" +git-tree-sha1 = "46fd1c828bdc19ec6ee7c10a6362d01bacb4111d" uuid = "c72e72a9-a271-4b2b-8966-303ed956772e" -version = "1.1.1" +version = "1.2.0" [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" -[[deps.SIMDTypes]] -git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" -uuid = "94e857df-77ce-4151-89e5-788b33177be4" -version = "0.1.0" - [[deps.SciMLBase]] -deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Moshi", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "908c0bf271604d09393a21c142116ab26f66f67c" +deps = ["ADTypes", "Accessors", "Adapt", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PreallocationTools", "PrecompileTools", "Preferences", "Printf", "Random", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLLogging", "SciMLOperators", "SciMLPublic", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] +git-tree-sha1 = "450a8405f96d0a7c6caabed0852def06ba8c6bf1" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.154.0" +version = "3.7.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -1681,7 +1657,6 @@ version = "2.154.0" SciMLBaseDistributionsExt = "Distributions" SciMLBaseEnzymeExt = "Enzyme" SciMLBaseForwardDiffExt = "ForwardDiff" - SciMLBaseMLStyleExt = "MLStyle" SciMLBaseMakieExt = "Makie" SciMLBaseMeasurementsExt = "Measurements" SciMLBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" @@ -1701,7 +1676,6 @@ version = "2.154.0" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" - MLStyle = "d8e11817-5142-5d16-987a-aa16d5891078" Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" @@ -1722,9 +1696,9 @@ version = "0.1.3" [[deps.SciMLJacobianOperators]] deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DifferentiationInterface", "FastClosures", "LinearAlgebra", "SciMLBase", "SciMLOperators"] -git-tree-sha1 = "e96d5e96debf7f80a50d0b976a13dea556ccfd3a" +git-tree-sha1 = "7156a5b51cba1bea33a82a036939ead4131f92bc" uuid = "19f34311-ddf3-4b8b-af20-060888a46c0e" -version = "0.1.12" +version = "0.1.13" [[deps.SciMLLogging]] deps = ["Logging", "LoggingExtras", "Preferences"] @@ -1740,9 +1714,9 @@ version = "1.9.1" [[deps.SciMLOperators]] deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra"] -git-tree-sha1 = "234869cf9fee9258a95464b7a7065cc7be84db00" +git-tree-sha1 = "0e34162268883db01c04f988895a80d0659071bb" uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" -version = "1.16.0" +version = "1.17.0" weakdeps = ["SparseArrays", "StaticArraysCore"] [deps.SciMLOperators.extensions] @@ -1768,6 +1742,7 @@ version = "1.3.0" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" +version = "1.11.0" [[deps.Setfield]] deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] @@ -1788,9 +1763,9 @@ version = "1.2.0" [[deps.SimpleNonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "744c3f0fb186ad28376199c1e72ca39d0c614b5d" +git-tree-sha1 = "d688de789b7e643326caf9a1051376dadbcd8873" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "2.11.0" +version = "2.11.1" [deps.SimpleNonlinearSolve.extensions] SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" @@ -1810,6 +1785,7 @@ version = "0.9.5" [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" +version = "1.11.0" [[deps.SortingAlgorithms]] deps = ["DataStructures"] @@ -1820,26 +1796,29 @@ version = "1.2.2" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -version = "1.10.0" +version = "1.11.0" [[deps.SparseMatrixColorings]] deps = ["ADTypes", "DocStringExtensions", "LinearAlgebra", "PrecompileTools", "Random", "SparseArrays"] -git-tree-sha1 = "1c1be8c6fdfaf9b6c9e156c509e672953b8e6af7" +git-tree-sha1 = "f63d76c7b7c329cf11badd564fd8ba877b09c3fe" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.4.26" +version = "0.4.27" [deps.SparseMatrixColorings.extensions] - SparseMatrixColoringsCUDAExt = "CUDA" + SparseMatrixColoringsCUDAExt = ["CUDA", "cuSPARSE"] SparseMatrixColoringsCliqueTreesExt = "CliqueTrees" SparseMatrixColoringsColorsExt = "Colors" + SparseMatrixColoringsGPUArraysExt = "GPUArrays" SparseMatrixColoringsJuMPExt = ["JuMP", "MathOptInterface"] [deps.SparseMatrixColorings.weakdeps] CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" CliqueTrees = "60701a23-6482-424a-84db-faee86b9b1f8" Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" + GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" JuMP = "4076af6c-e467-56ae-b986-b466b2749572" MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" + cuSPARSE = "b26da814-b3bc-49ef-b0ee-c816305aa060" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] @@ -1859,26 +1838,6 @@ git-tree-sha1 = "4f96c596b8c8258cc7d3b19797854d368f243ddc" uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" version = "1.0.4" -[[deps.Static]] -deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools", "SciMLPublic"] -git-tree-sha1 = "49440414711eddc7227724ae6e570c7d5559a086" -uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "1.3.1" - -[[deps.StaticArrayInterface]] -deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "SciMLPublic", "Static"] -git-tree-sha1 = "aa1ea41b3d45ac449d10477f65e2b40e3197a0d2" -uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" -version = "1.9.0" - - [deps.StaticArrayInterface.extensions] - StaticArrayInterfaceOffsetArraysExt = "OffsetArrays" - StaticArrayInterfaceStaticArraysExt = "StaticArrays" - - [deps.StaticArrayInterface.weakdeps] - OffsetArrays = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] git-tree-sha1 = "246a8bb2e6667f832eea063c3a56aef96429a3db" @@ -1899,9 +1858,14 @@ uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" version = "1.4.4" [[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] +deps = ["LinearAlgebra"] +git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.10.0" +version = "1.11.1" +weakdeps = ["SparseArrays"] + + [deps.Statistics.extensions] + SparseArraysExt = ["SparseArrays"] [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1930,82 +1894,76 @@ version = "1.5.2" InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" [[deps.StochasticDiffEq]] -deps = ["DiffEqBase", "DiffEqNoiseProcess", "LinearAlgebra", "OrdinaryDiffEqCore", "OrdinaryDiffEqNonlinearSolve", "Reexport", "SciMLBase", "StochasticDiffEqCore", "StochasticDiffEqHighOrder", "StochasticDiffEqIIF", "StochasticDiffEqImplicit", "StochasticDiffEqLeaping", "StochasticDiffEqLevyArea", "StochasticDiffEqLowOrder", "StochasticDiffEqMilstein", "StochasticDiffEqROCK", "StochasticDiffEqRODE", "StochasticDiffEqWeak"] -git-tree-sha1 = "65e432f49eae999e39d4f137e6a7527eb70ff2c5" +deps = ["ADTypes", "DiffEqBase", "DiffEqNoiseProcess", "LinearAlgebra", "OrdinaryDiffEqCore", "OrdinaryDiffEqNonlinearSolve", "Reexport", "SciMLBase", "StochasticDiffEqCore", "StochasticDiffEqHighOrder", "StochasticDiffEqIIF", "StochasticDiffEqImplicit", "StochasticDiffEqLeaping", "StochasticDiffEqLevyArea", "StochasticDiffEqLowOrder", "StochasticDiffEqMilstein", "StochasticDiffEqROCK", "StochasticDiffEqRODE", "StochasticDiffEqWeak"] +git-tree-sha1 = "3472f4edc1571de470f1811b999f9a962d88e08b" uuid = "789caeaf-c7a9-5a7d-9973-96adeb23e2a0" -version = "6.101.0" +version = "7.0.0" [[deps.StochasticDiffEqCore]] deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqNoiseProcess", "FastPower", "FiniteDiff", "ForwardDiff", "JumpProcesses", "LinearAlgebra", "Logging", "MuladdMacro", "OrdinaryDiffEqCore", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLLogging", "SciMLOperators", "SimpleNonlinearSolve", "SparseArrays", "StaticArrays", "StochasticDiffEqLevyArea"] -git-tree-sha1 = "9bc7b74e950dfdc8dac95280b7d8fd49aa8fb7bc" +git-tree-sha1 = "377aa541fea0de2a10067d906305f45f9c78a8de" uuid = "19c5a474-6cd1-4a5f-be79-46dc34e54d7f" -version = "1.1.0" +version = "2.0.0" [[deps.StochasticDiffEqHighOrder]] deps = ["DiffEqBase", "DiffEqNoiseProcess", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "StochasticDiffEqCore"] -git-tree-sha1 = "9f4231321117408aa9b7884d5379b646f8d07754" +git-tree-sha1 = "d08d2821c81ae60676345a038e364d2f9319dce6" uuid = "0520c28c-50fd-4d16-9c96-902fc80b3bab" -version = "1.0.0" +version = "2.0.0" [[deps.StochasticDiffEqIIF]] deps = ["DiffEqBase", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase", "StochasticDiffEqCore"] -git-tree-sha1 = "8d82ed0b5114eac176ce29237b5b12c399517ff8" +git-tree-sha1 = "a559afce60991f14447a2af76b0db067474d3e8e" uuid = "ebf54054-c36b-4494-9aba-657e36df524f" -version = "1.0.0" +version = "2.0.0" [[deps.StochasticDiffEqImplicit]] deps = ["ADTypes", "DiffEqBase", "DiffEqNoiseProcess", "FiniteDiff", "ForwardDiff", "JumpProcesses", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqNonlinearSolve", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "StochasticDiffEqCore"] -git-tree-sha1 = "a63c04c61da6fb85343f6b2e9121525519f94353" +git-tree-sha1 = "8f12780b317807d2339f241287c39cd2844af331" uuid = "5080b986-4c76-4669-b5dc-373a41579d5b" -version = "1.2.0" +version = "2.0.0" [[deps.StochasticDiffEqLeaping]] deps = ["ADTypes", "DiffEqBase", "FiniteDiff", "ForwardDiff", "JumpProcesses", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqNonlinearSolve", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "StochasticDiffEqCore"] -git-tree-sha1 = "30d557d0cd853356b7a3926cc069f82fe97f2af0" +git-tree-sha1 = "a1335b23ca9015fd9a3344b34959591c312754cf" uuid = "aefaaa88-39f2-4e89-b162-d61b7e8cc81b" -version = "1.0.0" +version = "2.0.0" [[deps.StochasticDiffEqLevyArea]] deps = ["LinearAlgebra", "Random", "SpecialFunctions"] -git-tree-sha1 = "ac6b47de2be99255ba42e2b30a86a927ac53b1c7" +git-tree-sha1 = "083805654fde34d3d32d4dd91bcc20f4c0330db3" uuid = "90dbc90e-856a-4131-af2c-e8c5aa0f35b5" -version = "1.0.0" +version = "2.0.0" [[deps.StochasticDiffEqLowOrder]] deps = ["DiffEqBase", "DiffEqNoiseProcess", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "StochasticDiffEqCore"] -git-tree-sha1 = "a32b3996548663ab20c6e0d0fbcef332bf42400e" +git-tree-sha1 = "8ddc071c08eeb91e82e981e778a7dd2427037107" uuid = "d15fe365-ce7f-450a-828a-7985bd5b681b" -version = "1.0.0" +version = "2.0.0" [[deps.StochasticDiffEqMilstein]] deps = ["DiffEqBase", "DiffEqNoiseProcess", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "StochasticDiffEqCore", "StochasticDiffEqLevyArea"] -git-tree-sha1 = "617f407dbef5bde9932ed2ebba4bf253f089d75f" +git-tree-sha1 = "2f348e2cc3daba9b4ab610566b92e1dd2a80ba73" uuid = "8c95a807-c8e7-4581-8419-890d001af53e" -version = "1.1.0" +version = "2.0.0" [[deps.StochasticDiffEqROCK]] deps = ["DiffEqBase", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "StochasticDiffEqCore"] -git-tree-sha1 = "7b5f6d575cfc518a5b324e33609ebcc3d679cc6d" +git-tree-sha1 = "c0311e9e23fd089409e1cae7e7ab688dab3880dd" uuid = "db241ea8-0e6b-4abc-8f2d-1adff2294fd9" -version = "1.0.0" +version = "2.0.0" [[deps.StochasticDiffEqRODE]] deps = ["DiffEqBase", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "StochasticDiffEqCore"] -git-tree-sha1 = "51ba8a4d199a8e386c578d974a2e453c7f7b18a7" +git-tree-sha1 = "004b812a961588feefdc787958611e690901a382" uuid = "49714585-0aa1-4f53-b1e6-a9b8c0d5e03f" -version = "1.0.0" +version = "2.0.0" [[deps.StochasticDiffEqWeak]] deps = ["ADTypes", "DiffEqBase", "DiffEqNoiseProcess", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqNonlinearSolve", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "StochasticDiffEqCore"] -git-tree-sha1 = "60d6d7c180aeae58f254d0c5d3377bc4f6bb959d" +git-tree-sha1 = "c25f46aec1d61e46b63f807a959c635c8e50ac7a" uuid = "af2a2fcd-1c36-4cbe-a6d0-5afda784a085" -version = "1.1.0" - -[[deps.StrideArraysCore]] -deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "83151ba8065a73f53ca2ae98bc7274d817aa30f2" -uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.5.8" +version = "2.0.0" [[deps.StringEncodings]] deps = ["Libiconv_jll"] @@ -2034,6 +1992,10 @@ version = "0.7.3" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" + [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" @@ -2041,7 +2003,7 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "7.2.1+1" +version = "7.7.0+0" [[deps.SymbolicIndexingInterface]] deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] @@ -2086,12 +2048,7 @@ version = "0.1.1" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" - -[[deps.ThreadingUtilities]] -deps = ["ManualMemory"] -git-tree-sha1 = "d969183d3d244b6c33796b5ed01ab97328f2db85" -uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" -version = "0.5.5" +version = "1.11.0" [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] @@ -2124,9 +2081,11 @@ version = "1.6.1" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +version = "1.11.0" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +version = "1.11.0" [[deps.UnicodeFun]] deps = ["REPL"] @@ -2242,9 +2201,9 @@ version = "0.9.12+0" [[deps.Xorg_libpciaccess_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "4909eb8f1cbf6bd4b1c30dd18b2ead9019ef2fad" +git-tree-sha1 = "58972370b81423fc546c56a60ed1a009450177c3" uuid = "a65dc6b1-eb27-53a1-bb3e-dea574b5389e" -version = "0.18.1+0" +version = "0.19.0+0" [[deps.Xorg_libxcb_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXau_jll", "Xorg_libXdmcp_jll"] @@ -2302,9 +2261,9 @@ version = "1.4.7+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "00af7ebdc563c9217ecc67776d1bbf037dbcebf4" +git-tree-sha1 = "429722587208f02b1cecbddcd20133df2f1ed796" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.44.0+0" +version = "2.47.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2355,9 +2314,9 @@ version = "0.61.1+0" [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" +git-tree-sha1 = "850b06095ee71f0135d644ffd8a52850699581ed" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.13.1+0" +version = "3.13.3+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] @@ -2402,9 +2361,9 @@ version = "1.28.1+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "e2a7072fc0cdd7949528c1455a3e5da4122e1153" +git-tree-sha1 = "e51150d5ab85cee6fc36726850f0e627ad2e4aba" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.56+0" +version = "1.6.58+0" [[deps.libsodium_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -2433,7 +2392,7 @@ version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.52.0+1" +version = "1.59.0+0" [[deps.oneTBB_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] @@ -2444,7 +2403,7 @@ version = "2022.0.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.6.1+0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] diff --git a/benchmarks/StiffSDE/Oval2Timings.jmd b/benchmarks/StiffSDE/Oval2Timings.jmd index 10a6e123d..494962ba9 100644 --- a/benchmarks/StiffSDE/Oval2Timings.jmd +++ b/benchmarks/StiffSDE/Oval2Timings.jmd @@ -5,8 +5,9 @@ author: Chris Rackauckas ```julia using StochasticDiffEq, SDEProblemLibrary, Random, Base.Threads +using SciMLLogging prob = SDEProblemLibrary.oval2ModelExample(largeFluctuations=true,useBigs=false) -prob_func(prob,i,repeat) = remake(prob,seed=i) +prob_func(prob, ctx) = remake(prob, seed = ctx.i) prob = EnsembleProblem(remake(prob,tspan=(0.0,1.0)),prob_func=prob_func) js = 16:21 dts = 1.0 ./ 2.0 .^ (js) @@ -116,8 +117,8 @@ println("The number of Adaptive Fails is $numfails. Elapsed time was $adaptive_t ```julia for j in eachindex(js) println("j = $j") - sol =solve(prob,EM(),EnsembleThreads(),dt=dts[j],maxiters=Int(1e11),save_everystep=false,verbose=false,trajectories=Threads.nthreads()) - t1 = @elapsed sol = solve(prob,EM(),EnsembleThreads(),dt=dts[j],maxiters=Int(1e11),save_everystep=false,verbose=false,trajectories=trajectories) + sol =solve(prob,EM(),EnsembleThreads(),dt=dts[j],maxiters=Int(1e11),save_everystep=false,verbose=SciMLLogging.None(),trajectories=Threads.nthreads()) + t1 = @elapsed sol = solve(prob,EM(),EnsembleThreads(),dt=dts[j],maxiters=Int(1e11),save_everystep=false,verbose=SciMLLogging.None(),trajectories=trajectories) numfails = sum([Int(any(isnan,sol[i]) || sol[i].t[end] != 1) for i in 1:trajectories]) println("The number of Euler-Maruyama Fails is $numfails. Elapsed time was $t1") fails[j,1] = numfails @@ -128,8 +129,8 @@ end ```julia for j in 1:4 println("j = $j") - sol =solve(prob,SRIW1(),EnsembleThreads(),dt=dts[j],maxiters=Int(1e11),save_everystep=false,verbose=false,trajectories=Threads.nthreads()) - t1 = @elapsed sol = solve(prob,SRIW1(),EnsembleThreads(),dt=dts[j],maxiters=Int(1e11),save_everystep=false,verbose=false,trajectories=trajectories) + sol =solve(prob,SRIW1(),EnsembleThreads(),dt=dts[j],maxiters=Int(1e11),save_everystep=false,verbose=SciMLLogging.None(),trajectories=Threads.nthreads()) + t1 = @elapsed sol = solve(prob,SRIW1(),EnsembleThreads(),dt=dts[j],maxiters=Int(1e11),save_everystep=false,verbose=SciMLLogging.None(),trajectories=trajectories) numfails = sum([Int(any(isnan,sol[i]) || sol[i].t[end] != 1) for i in 1:trajectories]) println("The number of SRIW1 Fails is $numfails. Elapsed time was $t1") fails[j,3] = numfails @@ -142,8 +143,8 @@ js = 17:21 dts = 1.0 ./2.0 .^ (js) for j in 1:6 println("j = $j") - sol =solve(prob,ImplicitEM(),EnsembleThreads(),dt=dts[j],maxiters=Int(1e11),save_everystep=false,verbose=false,trajectories=Threads.nthreads()) - t1 = @elapsed sol = solve(prob,ImplicitEM(),EnsembleThreads(),dt=dts[j],maxiters=Int(1e11),save_everystep=false,verbose=false,trajectories=trajectories) + sol =solve(prob,ImplicitEM(),EnsembleThreads(),dt=dts[j],maxiters=Int(1e11),save_everystep=false,verbose=SciMLLogging.None(),trajectories=Threads.nthreads()) + t1 = @elapsed sol = solve(prob,ImplicitEM(),EnsembleThreads(),dt=dts[j],maxiters=Int(1e11),save_everystep=false,verbose=SciMLLogging.None(),trajectories=trajectories) numfails = sum([Int(any(isnan,sol[i]) || sol[i].t[end] != 1) for i in 1:trajectories]) println("The number of Implicit-EM Fails is $numfails. Elapsed time was $t1") end @@ -155,8 +156,8 @@ dts = 1.0 ./ 2.0 .^(js) for j in 1:6 println("j = $j") - sol =solve(prob,ImplicitRKMil(),EnsembleThreads(),dt=dts[j],maxiters=Int(1e11),save_everystep=false,verbose=false,trajectories=Threads.nthreads()) - t1 = @elapsed sol = solve(prob,ImplicitRKMil(),EnsembleThreads(),dt=dts[j],maxiters=Int(1e11),save_everystep=false,verbose=false,trajectories=trajectories) + sol =solve(prob,ImplicitRKMil(),EnsembleThreads(),dt=dts[j],maxiters=Int(1e11),save_everystep=false,verbose=SciMLLogging.None(),trajectories=Threads.nthreads()) + t1 = @elapsed sol = solve(prob,ImplicitRKMil(),EnsembleThreads(),dt=dts[j],maxiters=Int(1e11),save_everystep=false,verbose=SciMLLogging.None(),trajectories=trajectories) numfails = sum([Int(any(isnan,sol[i]) || sol[i].t[end] != 1) for i in 1:trajectories]) println("The number of Implicit-RKMil Fails is $numfails. Elapsed time was $t1") end @@ -165,8 +166,8 @@ end ```julia for j in 1:6 println("j = $j") - sol =solve(prob,RKMil(),EnsembleThreads(),dt=dts[j],maxiters=Int(1e11),save_everystep=false,verbose=false,trajectories=Threads.nthreads()) - t1 = @elapsed sol = solve(prob,RKMil(),EnsembleThreads(),dt=dts[j],maxiters=Int(1e11),save_everystep=false,verbose=false,trajectories=trajectories) + sol =solve(prob,RKMil(),EnsembleThreads(),dt=dts[j],maxiters=Int(1e11),save_everystep=false,verbose=SciMLLogging.None(),trajectories=Threads.nthreads()) + t1 = @elapsed sol = solve(prob,RKMil(),EnsembleThreads(),dt=dts[j],maxiters=Int(1e11),save_everystep=false,verbose=SciMLLogging.None(),trajectories=trajectories) numfails = sum([Int(any(isnan,sol[i]) || sol[i].t[end] != 1) for i in 1:trajectories]) println("The number of RKMil Fails is $numfails. Elapsed time was $t1") fails[j,2] = numfails diff --git a/benchmarks/StiffSDE/Project.toml b/benchmarks/StiffSDE/Project.toml index 72daea16a..25cb310f8 100644 --- a/benchmarks/StiffSDE/Project.toml +++ b/benchmarks/StiffSDE/Project.toml @@ -6,14 +6,16 @@ Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" SDEProblemLibrary = "c72e72a9-a271-4b2b-8966-303ed956772e" SciMLBenchmarks = "31c91b34-3c75-11e9-0341-95557aab0344" +SciMLLogging = "a6db7da4-7206-11f0-1eab-35f2a5dbe1d1" Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" StochasticDiffEq = "789caeaf-c7a9-5a7d-9973-96adeb23e2a0" [compat] -DiffEqDevTools = "2.30" +DiffEqDevTools = "3" DiffEqNoiseProcess = "4.3, 5.0" Plots = "1.4" SDEProblemLibrary = "0.1, 1" SciMLBenchmarks = "0.1" +SciMLLogging = "1, 2" Statistics = "1" -StochasticDiffEq = "6.50" +StochasticDiffEq = "7" diff --git a/benchmarks/Surrogates/Manifest.toml b/benchmarks/Surrogates/Manifest.toml index d5ad88a3d..f3dc483ff 100644 --- a/benchmarks/Surrogates/Manifest.toml +++ b/benchmarks/Surrogates/Manifest.toml @@ -1,7 +1,6 @@ # This file is machine-generated - editing it directly is not advised -# GHA CI test: Manifest.toml coalescing trigger -julia_version = "1.10.10" +julia_version = "1.11.9" manifest_format = "2.0" project_hash = "4a11c7f9b7f0bd64310060f604c56839428aeaec" @@ -23,9 +22,9 @@ version = "0.4.5" [[deps.Accessors]] deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] -git-tree-sha1 = "856ecd7cebb68e5fc87abecd2326ad59f0f911f3" +git-tree-sha1 = "2eeb2c9bef11013efc6f8f97f32ee59b146b09fb" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.43" +version = "0.1.44" [deps.Accessors.extensions] AxisKeysExt = "AxisKeys" @@ -47,9 +46,9 @@ version = "0.1.43" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" +git-tree-sha1 = "0761717147821d696c9470a7a86364b2fbd22fd8" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.4.0" +version = "4.5.2" weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] @@ -64,25 +63,87 @@ version = "1.1.3" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" + +[[deps.ArrayInterface]] +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "54f895554d05c83e3dd59f6a396671dae8999573" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.24.0" + + [deps.ArrayInterface.extensions] + ArrayInterfaceAMDGPUExt = "AMDGPU" + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" + ArrayInterfaceChainRulesExt = "ChainRules" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +version = "1.11.0" + +[[deps.Atomix]] +deps = ["UnsafeAtomics"] +git-tree-sha1 = "b8651b2eb5796a386b0398a20b519a6a6150f75c" +uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" +version = "1.1.3" + + [deps.Atomix.extensions] + AtomixCUDAExt = "CUDA" + AtomixMetalExt = "Metal" + AtomixOpenCLExt = "OpenCL" + AtomixoneAPIExt = "oneAPI" + + [deps.Atomix.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + OpenCL = "08131aa3-fb12-5dee-8b74-c09406e224a2" + oneAPI = "8f75cd03-7ff8-4ecb-9b8f-daf728133b1b" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.BenchmarkTools]] -deps = ["Compat", "JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"] -git-tree-sha1 = "7fecfb1123b8d0232218e2da0c213004ff15358d" +deps = ["Compat", "JSON", "Logging", "PrecompileTools", "Printf", "Profile", "Statistics", "UUIDs"] +git-tree-sha1 = "9670d3febc2b6da60a0ae57846ba74670290653f" uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" -version = "1.6.3" +version = "1.8.0" [[deps.BitFlags]] git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" version = "0.1.9" +[[deps.BitTwiddlingConvenienceFunctions]] +deps = ["Static"] +git-tree-sha1 = "f21cfd4950cb9f0587d5067e69405ad2acd27b87" +uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" +version = "0.1.6" + [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" @@ -94,23 +155,29 @@ git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" version = "0.5.0" +[[deps.CPUSummary]] +deps = ["CpuId", "IfElse", "PrecompileTools", "Preferences", "Static"] +git-tree-sha1 = "f3a21d7fc84ba618a779d1ed2fcca2e682865bab" +uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" +version = "0.2.7" + [[deps.CUDA_Driver_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "23bf4e60006b78544f753880fbcf1aa158a7669c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "TOML"] +git-tree-sha1 = "3b759ec65ac87ad192c2925114fa5c126657a5bd" uuid = "4ee394cb-3365-5eb0-8335-949819d2adfc" -version = "13.1.0+2" +version = "13.2.1+0" [[deps.CUDA_Runtime_jll]] deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "aa15017227b7cc388431875270c26cefe99afec4" +git-tree-sha1 = "c0314d9fb0ebd00e404feba4c3fbc04c9975abc1" uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2" -version = "0.20.1+0" +version = "0.21.0+1" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "a21c5464519504e41e0cbc91f0188e8ca23d7440" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d0efe2c6fdcdaa1c161d206aa8b933788397ec71" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.18.5+1" +version = "1.18.6+0" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] @@ -120,14 +187,20 @@ version = "1.73.0" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] -git-tree-sha1 = "e4c6a16e77171a5f5e25e9646617ab1c276c5607" +git-tree-sha1 = "12177ad6b3cad7fd50c8b3825ce24a99ad61c18f" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.26.0" +version = "1.26.1" weakdeps = ["SparseArrays"] [deps.ChainRulesCore.extensions] ChainRulesCoreSparseArraysExt = "SparseArrays" +[[deps.CloseOpenIntervals]] +deps = ["Static", "StaticArrayInterface"] +git-tree-sha1 = "05ba0d07cd4fd8b7a39541e31a7b0254704ea581" +uuid = "fb6a15b2-703c-40df-9091-08a04967cfa9" +version = "0.1.13" + [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" @@ -145,13 +218,11 @@ deps = ["FixedPointNumbers", "Random"] git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" version = "0.12.1" +weakdeps = ["StyledStrings"] [deps.ColorTypes.extensions] StyledStringsExt = "StyledStrings" - [deps.ColorTypes.weakdeps] - StyledStrings = "f489334b-da3d-4c2e-b8f0-e476e12c162b" - [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" @@ -174,6 +245,11 @@ git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.1" +[[deps.CommonWorldInvalidations]] +git-tree-sha1 = "ae52d1c52048455e85a387fbee9be553ec2b68d0" +uuid = "f70d9fcc-98c5-4d4a-abd7-e4cdeebd8ca8" +version = "1.0.0" + [[deps.Compat]] deps = ["TOML", "UUIDs"] git-tree-sha1 = "9d8a54ce4b17aa5bdce0ea5c34bc5e7c340d16ad" @@ -235,6 +311,12 @@ git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" version = "0.6.3" +[[deps.CpuId]] +deps = ["Markdown"] +git-tree-sha1 = "fcbb72b032692610bfbdb15018ac16a36cf2e406" +uuid = "adafc99b-e345-5852-983c-f28acb93d879" +version = "0.3.1" + [[deps.Crayons]] git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" @@ -247,9 +329,9 @@ version = "1.16.0" [[deps.DataStructures]] deps = ["OrderedCollections"] -git-tree-sha1 = "e357641bb3e0638d353c4b29ea0e40ea644066a6" +git-tree-sha1 = "e86f4a2805f7f19bec5129bc9150c38208e5dc23" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.19.3" +version = "0.19.4" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -259,6 +341,7 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" [[deps.Dbus_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] @@ -287,12 +370,13 @@ version = "1.15.1" [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +version = "1.11.0" [[deps.Distributions]] deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] -git-tree-sha1 = "fbcc7610f6d8348428f722ecbe0e6cfe22e672c6" +git-tree-sha1 = "e421c1938fafab0165b04dc1a9dbe2a26272952c" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.123" +version = "0.25.125" [deps.Distributions.extensions] DistributionsChainRulesCoreExt = "ChainRulesCore" @@ -328,9 +412,9 @@ version = "0.1.11" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "27af30de8b5445644e8ffe3bcb0d72049c089cf1" +git-tree-sha1 = "8f05e9a2e7c2e3eb524102bb2926c5743c07fbe1" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.7.3+0" +version = "2.8.0+0" [[deps.ExtendableSparse]] deps = ["DocStringExtensions", "ILUZero", "LinearAlgebra", "Printf", "SparseArrays", "Sparspak", "StaticArrays", "SuiteSparse", "Test"] @@ -359,13 +443,14 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" version = "0.4.5" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "01ba9d15e9eae375dc1eb9589df76b3572acd3f2" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libva_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "cac41ca6b2d399adfc95e51240566f8a60a80806" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "8.0.1+0" +version = "8.1.0+0" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" +version = "1.11.0" [[deps.FillArrays]] deps = ["LinearAlgebra"] @@ -399,9 +484,9 @@ version = "1.3.7" [[deps.ForwardDiff]] deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] -git-tree-sha1 = "eef4c86803f47dcb61e9b8790ecaa96956fdd8ae" +git-tree-sha1 = "cddeab6487248a39dae1a960fff0ac17b2a28888" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "1.3.2" +version = "1.3.3" weakdeps = ["StaticArrays"] [deps.ForwardDiff.extensions] @@ -409,9 +494,9 @@ weakdeps = ["StaticArrays"] [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "2c5512e11c791d1baed2049c5652441b28fc6a31" +git-tree-sha1 = "70329abc09b886fd2c5d94ad2d9527639c421e3e" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.4+0" +version = "2.14.3+1" [[deps.FriBidi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -421,15 +506,15 @@ version = "1.0.17+0" [[deps.GLFW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] -git-tree-sha1 = "b7bfd56fa66616138dfe5237da4dc13bbd83c67f" +git-tree-sha1 = "9e0fb9e54594c47f278d75063980e43066e26e20" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.4.1+0" +version = "3.4.1+1" [[deps.GLM]] deps = ["Distributions", "LinearAlgebra", "Printf", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns", "StatsModels"] -git-tree-sha1 = "3bcb30438ee1655e3b9c42d97544de7addc9c589" +git-tree-sha1 = "b715b0156c01f27c94595290ec6abdab98ae7427" uuid = "38e38edf-8417-5370-95a0-9cbb8c7f171a" -version = "1.9.3" +version = "1.9.4" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -439,9 +524,9 @@ version = "0.2.0" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Qt6Wayland_jll", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] -git-tree-sha1 = "ee0585b62671ce88e48d3409733230b401c9775c" +git-tree-sha1 = "44716a1a667cb867ee0e9ec8edc31c3e4aa5afdc" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.73.22" +version = "0.73.24" [deps.GR.extensions] IJuliaExt = "IJulia" @@ -451,9 +536,9 @@ version = "0.73.22" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "7dd7173f7129a1b6f84e0f03e0890cd1189b0659" +git-tree-sha1 = "be8a1b8065959e24fdc1b51402f39f3b6f0f6653" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.73.22+0" +version = "0.73.24+0" [[deps.GettextRuntime_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll"] @@ -486,9 +571,9 @@ version = "1.0.2" [[deps.HTTP]] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "PrecompileTools", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "5e6fe50ae7f23d171f44e311c2960294aaa0beb5" +git-tree-sha1 = "51059d23c8bb67911a2e6fd5130229113735fc7e" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.10.19" +version = "1.11.0" [[deps.HarfBuzz_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll"] @@ -514,6 +599,11 @@ git-tree-sha1 = "57e9ce6cf68d0abf5cb6b3b4abf9bedf05c939c0" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" version = "0.4.15" +[[deps.IfElse]] +git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" +uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" +version = "0.1.1" + [[deps.IntegerMathUtils]] git-tree-sha1 = "4c1acff2dc6b6967e7e750633c50bc3b8d83e617" uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" @@ -522,6 +612,7 @@ version = "0.1.3" [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" +version = "1.11.0" [[deps.InverseFunctions]] git-tree-sha1 = "a779299d77cd080bf77b97535acecd73e1c5e5cb" @@ -563,9 +654,9 @@ version = "1.7.1" [[deps.JSON]] deps = ["Dates", "Logging", "Parsers", "PrecompileTools", "StructUtils", "UUIDs", "Unicode"] -git-tree-sha1 = "b3ad4a0255688dcb895a52fafbaae3023b588a90" +git-tree-sha1 = "fe23330af47b8ab4e135b2ff65f7398c3a2bfc65" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "1.4.0" +version = "1.5.2" [deps.JSON.extensions] JSONArrowExt = ["ArrowTypes"] @@ -575,9 +666,9 @@ version = "1.4.0" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "b6893345fd6658c8e475d40155789f4860ac3b21" +git-tree-sha1 = "c0c9b76f3520863909825cbecdef58cd63de705a" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "3.1.4+0" +version = "3.1.5+0" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -587,9 +678,9 @@ version = "3.100.3+0" [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "aaafe88dccbd957a8d82f7d05be9b69172e0cee3" +git-tree-sha1 = "17b94ecafcfa45e8360a4fc9ca6b583b049e4e37" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "4.0.1+0" +version = "4.1.0+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -597,12 +688,6 @@ git-tree-sha1 = "eb62a3deb62fc6d8822c0c4bef73e4412419c5d8" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" version = "18.1.8+0" -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "1c602b1127f4751facb671441ca72715cc95938a" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.3+0" - [[deps.LaTeXStrings]] git-tree-sha1 = "dda21b8cbd6a6c40d9d02a73230f9d70fed6918c" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" @@ -632,9 +717,16 @@ git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" version = "0.0.1" +[[deps.LayoutPointers]] +deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] +git-tree-sha1 = "a9eaadb366f5493a5654e843864c13d8b107548c" +uuid = "10f19ff3-798f-405d-979b-55457f8fc047" +version = "0.1.17" + [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" +version = "1.11.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] @@ -644,16 +736,17 @@ version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.4.0+0" +version = "8.6.0+0" [[deps.LibGit2]] deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +version = "1.11.0" [[deps.LibGit2_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.6.4+0" +version = "1.7.2+0" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] @@ -662,6 +755,7 @@ version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" +version = "1.11.0" [[deps.Libffi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -683,9 +777,9 @@ version = "1.18.0+0" [[deps.Libmount_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "97bbca976196f2a1eb9607131cb108c69ec3f8a6" +git-tree-sha1 = "cc3ad4faf30015a3e8094c9b5b7f19e85bdf2386" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] @@ -695,13 +789,14 @@ version = "4.7.2+0" [[deps.Libuuid_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "d0205286d9eceadc518742860bf23f703779a3d6" +git-tree-sha1 = "d620582b1f0cbe2c72dd1d5bd195a9ce73370ab1" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.41.3+0" +version = "2.42.0+0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +version = "1.11.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] @@ -721,6 +816,7 @@ version = "0.3.29" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" +version = "1.11.0" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] @@ -733,9 +829,15 @@ git-tree-sha1 = "1e0228a030642014fe5cfe68c2c0a818f9e3f522" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" version = "0.5.16" +[[deps.ManualMemory]] +git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" +uuid = "d125e4d3-2237-4719-b19c-fa641b8a4667" +version = "0.1.8" + [[deps.Markdown]] deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +version = "1.11.0" [[deps.MbedTLS]] deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] @@ -746,7 +848,7 @@ version = "1.1.10" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+1" +version = "2.28.6+0" [[deps.Measures]] git-tree-sha1 = "b513cedd20d9c914783d8ad83d08120702bf2c77" @@ -767,10 +869,11 @@ version = "1.2.0" [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" +version = "1.11.0" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2023.1.10" +version = "2023.12.12" [[deps.NaNMath]] deps = ["OpenLibm_jll"] @@ -800,7 +903,7 @@ version = "1.3.6+0" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.23+4" +version = "0.3.27+1" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] @@ -815,9 +918,9 @@ version = "1.6.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "c9cbeda6aceffc52d8a0017e71db27c7a7c0beaf" +git-tree-sha1 = "2ac022577e5eac7da040de17776d51bb770cd895" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.5.5+0" +version = "3.5.6+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -853,15 +956,15 @@ weakdeps = ["StatsBase"] [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "0662b083e11420952f2e62e17eddae7fc07d5997" +git-tree-sha1 = "58e5ed5e386e156bd93e86b305ebd21ac63d2d04" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" -version = "1.57.0+0" +version = "1.57.1+0" [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "7d2f8f21da5db6a806faf7b9b292296da42b2810" +git-tree-sha1 = "5d5e0a78e971354b1c7bff0655d11fdc1b0e12c8" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.8.3" +version = "2.8.4" [[deps.Pidfile]] deps = ["FileWatching", "Test"] @@ -876,9 +979,13 @@ uuid = "30392449-352a-5448-841d-b1acce4e97dc" version = "0.44.2+0" [[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.10.0" +version = "1.11.0" +weakdeps = ["REPL"] + + [deps.Pkg.extensions] + REPLExt = "REPL" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] @@ -912,6 +1019,18 @@ version = "1.41.6" ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" +[[deps.Polyester]] +deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] +git-tree-sha1 = "16bbc30b5ebea91e9ce1671adc03de2832cff552" +uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" +version = "0.7.19" + +[[deps.PolyesterWeave]] +deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] +git-tree-sha1 = "645bed98cd47f72f67316fd42fc47dee771aefcd" +uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad" +version = "0.2.2" + [[deps.PrecompileTools]] deps = ["Preferences"] git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" @@ -926,9 +1045,9 @@ version = "1.5.2" [[deps.PrettyTables]] deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "REPL", "Reexport", "StringManipulation", "Tables"] -git-tree-sha1 = "211530a7dc76ab59087f4d4d1fc3f086fbe87594" +git-tree-sha1 = "624de6279ab7d94fc9f672f0068107eb6619732c" uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" -version = "3.2.3" +version = "3.3.2" [deps.PrettyTables.extensions] PrettyTablesTypstryExt = "Typstry" @@ -945,10 +1064,11 @@ version = "0.5.7" [[deps.Printf]] deps = ["Unicode"] uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" +version = "1.11.0" [[deps.Profile]] -deps = ["Printf"] uuid = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79" +version = "1.11.0" [[deps.PtrArrays]] git-tree-sha1 = "4fbbafbc6251b883f4d2705356f3641f3652a7fe" @@ -971,33 +1091,39 @@ version = "0.9.31" [[deps.Qt6Base_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] -git-tree-sha1 = "34f7e5d2861083ec7596af8b8c092531facf2192" +git-tree-sha1 = "d7a4bff94f42208ce3cf6bc8e4e7d1d663e7ee8b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.8.2+2" +version = "6.10.2+1" [[deps.Qt6Declarative_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll", "Qt6ShaderTools_jll"] -git-tree-sha1 = "da7adf145cce0d44e892626e647f9dcbe9cb3e10" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll", "Qt6ShaderTools_jll", "Qt6Svg_jll"] +git-tree-sha1 = "d5b7dd0e226774cbd87e2790e34def09245c7eab" uuid = "629bc702-f1f5-5709-abd5-49b8460ea067" -version = "6.8.2+1" +version = "6.10.2+1" [[deps.Qt6ShaderTools_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll"] -git-tree-sha1 = "9eca9fc3fe515d619ce004c83c31ffd3f85c7ccf" +git-tree-sha1 = "4d85eedf69d875982c46643f6b4f66919d7e157b" uuid = "ce943373-25bb-56aa-8eca-768745ed7b5a" -version = "6.8.2+1" +version = "6.10.2+1" + +[[deps.Qt6Svg_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll"] +git-tree-sha1 = "81587ff5ff25a4e1115ce191e36285ede0334c9d" +uuid = "6de9746b-f93d-5813-b365-ba18ad4a9cf3" +version = "6.10.2+0" [[deps.Qt6Wayland_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll", "Qt6Declarative_jll"] -git-tree-sha1 = "8f528b0851b5b7025032818eb5abbeb8a736f853" +git-tree-sha1 = "672c938b4b4e3e0169a07a5f227029d4905456f2" uuid = "e99dba38-086e-5de3-a5b1-6e4c66e897c3" -version = "6.8.2+2" +version = "6.10.2+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "9da16da70037ba9d701192e27befedefb91ec284" +git-tree-sha1 = "5e8e8b0ab68215d7a2b14b9921a946fee794749e" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.11.2" +version = "2.11.3" [deps.QuadGK.extensions] QuadGKEnzymeExt = "Enzyme" @@ -1016,12 +1142,14 @@ weakdeps = ["Distributions"] QuasiMonteCarloDistributionsExt = "Distributions" [[deps.REPL]] -deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] +deps = ["InteractiveUtils", "Markdown", "Sockets", "StyledStrings", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" +version = "1.11.0" [[deps.Random]] deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" +version = "1.11.0" [[deps.RealDot]] deps = ["LinearAlgebra"] @@ -1074,6 +1202,16 @@ version = "0.5.1+0" uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" +[[deps.SIMDTypes]] +git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" +uuid = "94e857df-77ce-4151-89e5-788b33177be4" +version = "0.1.0" + +[[deps.SciMLPublic]] +git-tree-sha1 = "0ba076dbdce87ba230fff48ca9bca62e1f345c9b" +uuid = "431bcebd-1456-4ced-9d72-93c2757fff0b" +version = "1.0.1" + [[deps.Scratch]] deps = ["Dates"] git-tree-sha1 = "9b81b8393e50b7d4e6d0a9f14e192294d3b7c109" @@ -1082,6 +1220,7 @@ version = "1.3.0" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" +version = "1.11.0" [[deps.ShiftedArrays]] git-tree-sha1 = "503688b59397b3307443af35cd953a13e8005c16" @@ -1107,6 +1246,7 @@ version = "1.5.0" [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" +version = "1.11.0" [[deps.SortingAlgorithms]] deps = ["DataStructures"] @@ -1117,7 +1257,7 @@ version = "1.2.2" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -version = "1.10.0" +version = "1.11.0" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] @@ -1126,10 +1266,10 @@ uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" version = "0.1.2" [[deps.SparseMatricesCSR]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "0d3db7d6011b91b868c6fd97fa8274977bedb5bf" +deps = ["Atomix", "LinearAlgebra", "Polyester", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "914e64f3d7a3c7452200c2c637ad12f1aae8aacb" uuid = "a0a7dd2c-ebf4-11e9-1f05-cf50bc540ca1" -version = "0.6.10" +version = "0.6.12" [[deps.Sparspak]] deps = ["Libdl", "LinearAlgebra", "Logging", "OffsetArrays", "Printf", "SparseArrays", "Test"] @@ -1139,9 +1279,9 @@ version = "0.3.14" [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "5acc6a41b3082920f79ca3c759acbcecf18a8d78" +git-tree-sha1 = "2700b235561b0335d5bef7097a111dc513b8655e" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.7.1" +version = "2.7.2" weakdeps = ["ChainRulesCore"] [deps.SpecialFunctions.extensions] @@ -1153,11 +1293,28 @@ git-tree-sha1 = "4f96c596b8c8258cc7d3b19797854d368f243ddc" uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" version = "1.0.4" +[[deps.Static]] +deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools", "SciMLPublic"] +git-tree-sha1 = "bb072715f158b59ad8819ff80da5ffa90cce6ceb" +uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" +version = "1.4.0" + +[[deps.StaticArrayInterface]] +deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "SciMLPublic", "Static"] +git-tree-sha1 = "2a635e15d5035c53b345077c947f31ff91744078" +uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" +version = "1.10.0" +weakdeps = ["OffsetArrays", "StaticArrays"] + + [deps.StaticArrayInterface.extensions] + StaticArrayInterfaceOffsetArraysExt = "OffsetArrays" + StaticArrayInterfaceStaticArraysExt = "StaticArrays" + [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "0f529006004a8be48f1be25f3451186579392d47" +git-tree-sha1 = "246a8bb2e6667f832eea063c3a56aef96429a3db" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.17" +version = "1.9.18" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -1170,9 +1327,14 @@ uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" version = "1.4.4" [[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] +deps = ["LinearAlgebra"] +git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.10.0" +version = "1.11.1" +weakdeps = ["SparseArrays"] + + [deps.Statistics.extensions] + SparseArraysExt = ["SparseArrays"] [[deps.StatsAPI]] deps = ["LinearAlgebra"] @@ -1203,6 +1365,12 @@ git-tree-sha1 = "08786db4a1346d17d0a8d952d2e66fd00fa18192" uuid = "3eaba693-59b7-5ba5-a881-562e759f1c8d" version = "0.7.9" +[[deps.StrideArraysCore]] +deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] +git-tree-sha1 = "5316097111523c9a970596a5b33cfea5f92e8581" +uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" +version = "0.5.9" + [[deps.StringManipulation]] deps = ["PrecompileTools"] git-tree-sha1 = "d05693d339e37d6ab134c5ab53c29fce5ee5d7d5" @@ -1211,9 +1379,9 @@ version = "0.4.4" [[deps.StructArrays]] deps = ["ConstructionBase", "DataAPI", "Tables"] -git-tree-sha1 = "a2c37d815bf00575332b7bd0389f771cb7987214" +git-tree-sha1 = "ad8002667372439f2e3611cfd14097e03fa4bccd" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.7.2" +version = "0.7.3" [deps.StructArrays.extensions] StructArraysAdaptExt = "Adapt" @@ -1232,18 +1400,24 @@ version = "0.7.2" [[deps.StructUtils]] deps = ["Dates", "UUIDs"] -git-tree-sha1 = "28145feabf717c5d65c1d5e09747ee7b1ff3ed13" +git-tree-sha1 = "dd974aefe288ef2898733aecf40858dc86742d74" uuid = "ec057cc2-7a8d-4b58-b3b3-92acb9f63b42" -version = "2.6.3" +version = "2.8.1" [deps.StructUtils.extensions] StructUtilsMeasurementsExt = ["Measurements"] + StructUtilsStaticArraysCoreExt = ["StaticArraysCore"] StructUtilsTablesExt = ["Tables"] [deps.StructUtils.weakdeps] Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" +[[deps.StyledStrings]] +uuid = "f489334b-da3d-4c2e-b8f0-e476e12c162b" +version = "1.11.0" + [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" @@ -1251,7 +1425,7 @@ uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" -version = "7.2.1+1" +version = "7.7.0+0" [[deps.Surrogates]] deps = ["ChainRulesCore", "Distributions", "ExtendableSparse", "GLM", "IterativeSolvers", "LinearAlgebra", "PrecompileTools", "QuasiMonteCarlo", "Random", "SparseArrays", "Statistics", "SurrogatesBase", "Zygote"] @@ -1312,6 +1486,13 @@ version = "0.1.1" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" +version = "1.11.0" + +[[deps.ThreadingUtilities]] +deps = ["ManualMemory"] +git-tree-sha1 = "d969183d3d244b6c33796b5ed01ab97328f2db85" +uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" +version = "0.5.5" [[deps.TranscodingStreams]] git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742" @@ -1326,9 +1507,11 @@ version = "1.6.1" [[deps.UUIDs]] deps = ["Random", "SHA"] uuid = "cf7118a7-6976-5b1a-9a39-7adc72f591a4" +version = "1.11.0" [[deps.Unicode]] uuid = "4ec0a83e-493e-50e2-b9ac-8f72acf5a8f5" +version = "1.11.0" [[deps.UnicodeFun]] deps = ["REPL"] @@ -1336,6 +1519,17 @@ git-tree-sha1 = "53915e50200959667e78a92a418594b428dffddf" uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" version = "0.4.1" +[[deps.UnsafeAtomics]] +git-tree-sha1 = "0f30765c32d66d58e41f4cb5624d4fc8a82ec13b" +uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" +version = "0.3.1" + + [deps.UnsafeAtomics.extensions] + UnsafeAtomicsLLVM = ["LLVM"] + + [deps.UnsafeAtomics.weakdeps] + LLVM = "929cbde3-209d-540e-8aea-75f648917ca0" + [[deps.UnsafePointers]] git-tree-sha1 = "c81331b3b2e60a982be57c046ec91f599ede674a" uuid = "e17b2a0c-0bdf-430a-bd0c-3a23cae4ff39" @@ -1386,9 +1580,9 @@ version = "2.1.5+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "9cce64c0fdd1960b597ba7ecda2950b5ed957438" +git-tree-sha1 = "b29c22e245d092b8b4e8d3c09ad7baa586d9f573" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.8.2+0" +version = "5.8.3+0" [[deps.Xorg_libICE_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1462,6 +1656,12 @@ git-tree-sha1 = "7ed9347888fac59a618302ee38216dd0379c480d" uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" version = "0.9.12+0" +[[deps.Xorg_libpciaccess_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "58972370b81423fc546c56a60ed1a009450177c3" +uuid = "a65dc6b1-eb27-53a1-bb3e-dea574b5389e" +version = "0.19.0+0" + [[deps.Xorg_libxcb_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXau_jll", "Xorg_libXdmcp_jll"] git-tree-sha1 = "bfcaf7ec088eaba362093393fe11aa141fa15422" @@ -1518,9 +1718,9 @@ version = "1.4.7+0" [[deps.Xorg_xkeyboard_config_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "00af7ebdc563c9217ecc67776d1bbf037dbcebf4" +git-tree-sha1 = "429722587208f02b1cecbddcd20133df2f1ed796" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.44.0+0" +version = "2.47.0+0" [[deps.Xorg_xtrans_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1577,9 +1777,9 @@ version = "0.61.1+0" [[deps.libaom_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "371cc681c00a3ccc3fbc5c0fb91f58ba9bec1ecf" +git-tree-sha1 = "850b06095ee71f0135d644ffd8a52850699581ed" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.13.1+0" +version = "3.13.3+0" [[deps.libass_jll]] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] @@ -1598,6 +1798,12 @@ git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" version = "0.2.2+0" +[[deps.libdrm_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libpciaccess_jll"] +git-tree-sha1 = "63aac0bcb0b582e11bad965cef4a689905456c03" +uuid = "8e53e030-5e6c-5a89-a30b-be5b7263a166" +version = "2.4.125+1" + [[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "56d643b57b188d30cccc25e331d416d3d358e557" @@ -1618,9 +1824,15 @@ version = "1.28.1+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "e015f211ebb898c8180887012b938f3851e719ac" +git-tree-sha1 = "e51150d5ab85cee6fc36726850f0e627ad2e4aba" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.55+0" +version = "1.6.58+0" + +[[deps.libva_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll", "Xorg_libXext_jll", "Xorg_libXfixes_jll", "libdrm_jll"] +git-tree-sha1 = "7dbf96baae3310fe2fa0df0ccbb3c6288d5816c9" +uuid = "9a156e7d-b971-5f62-b2c9-67348b8fb97c" +version = "2.23.0+0" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] @@ -1643,7 +1855,7 @@ version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.52.0+1" +version = "1.59.0+0" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] diff --git a/benchmarks/Symbolics/Project.toml b/benchmarks/Symbolics/Project.toml index 291578dda..6bc1a7c76 100644 --- a/benchmarks/Symbolics/Project.toml +++ b/benchmarks/Symbolics/Project.toml @@ -24,13 +24,13 @@ XSteam = "95ff35a0-be81-11e9-2ca3-5b4e338e8476" [compat] BenchmarkTools = "1" CairoMakie = "0.13, 0.15" -Catalyst = "15, 16" +Catalyst = "16" Chairmarks = "1" DataStructures = "0.18, 0.19, 0.20" LinearSolve = "3" -ModelingToolkit = "9, 10, 11" +ModelingToolkit = "11" OrderedCollections = "1" -OrdinaryDiffEq = "6" +OrdinaryDiffEq = "7" Plots = "1" Polynomials = "4" PrettyTables = "3" diff --git a/benchmarks/Testing/Manifest.toml b/benchmarks/Testing/Manifest.toml index d05da5099..8fa6ba467 100644 --- a/benchmarks/Testing/Manifest.toml +++ b/benchmarks/Testing/Manifest.toml @@ -1,65 +1,71 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.10" +julia_version = "1.11.9" manifest_format = "2.0" -project_hash = "68ba5be0a107f936888c42eedc0265ec346c3e0f" +project_hash = "c00133cf365b9e2da39b2c55a741e1626ba8a1d9" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" -version = "1.1.1" +version = "1.1.2" [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +version = "1.11.0" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.9" [[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" - -[[deps.CSV]] -deps = ["CodecZlib", "Dates", "FilePathsBase", "InlineStrings", "Mmap", "Parsers", "PooledArrays", "PrecompileTools", "SentinelArrays", "Tables", "Unicode", "WeakRefStrings", "WorkerUtilities"] -git-tree-sha1 = "8d8e0b0f350b8e1c91420b5e64e5de774c2f0f4d" -uuid = "336ed68f-0bac-5ca0-87d4-7b16caf5d00b" -version = "0.10.16" +version = "1.0.9+0" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "d0efe2c6fdcdaa1c161d206aa8b933788397ec71" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" +version = "1.18.6+0" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.8" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "dd3000d954d483c1aad05fe1eb9e6a715c97013e" +git-tree-sha1 = "b0fd3f56fa442f81e0a47815c92245acfaaa4e34" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.22.0" +version = "3.31.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" +git-tree-sha1 = "67e11ee83a43eb71ddc950302c53bf33f0690dfe" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" +version = "0.12.1" +weakdeps = ["StyledStrings"] + + [deps.ColorTypes.extensions] + StyledStringsExt = "StyledStrings" [[deps.ColorVectorSpace]] deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] -git-tree-sha1 = "a1f44953f2382ebb937d60dafbe2deea4bd23249" +git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.10.0" +version = "0.11.0" [deps.ColorVectorSpace.extensions] SpecialFunctionsExt = "SpecialFunctions" @@ -69,19 +75,9 @@ version = "0.10.0" [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "fc08e5930ee9a4e03f84bfb5211cb54e7769758a" +git-tree-sha1 = "37ea44092930b1811e666c3bc38065d7d87fcc74" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.10" - -[[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "e460f044ca8b99be31d35fe54fc33a5c33dd8ed7" -uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.9.0" -weakdeps = ["Dates", "LinearAlgebra"] - - [deps.Compat.extensions] - CompatLinearAlgebraExt = "LinearAlgebra" +version = "0.13.1" [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] @@ -90,36 +86,31 @@ version = "1.1.1+0" [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "21d088c496ea22914fe80906eb5bce65755e5ec8" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.5.1" + +[[deps.Conda]] +deps = ["Downloads", "JSON", "VersionParsing"] +git-tree-sha1 = "8f06b0cfa4c514c7b9546756dbae91fcfbc92dc9" +uuid = "8f4d0f93-b110-5947-807f-2305c1781a2d" +version = "1.10.3" [[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" - -[[deps.Crayons]] -git-tree-sha1 = "249fe38abf76d48563e2f4556bebd215aa317e15" -uuid = "a8cc5b0e-0ffa-5ad4-8c14-923d3ee1735f" -version = "4.1.1" +version = "0.6.3" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" - -[[deps.DataFrames]] -deps = ["Compat", "DataAPI", "DataStructures", "Future", "InlineStrings", "InvertedIndices", "IteratorInterfaceExtensions", "LinearAlgebra", "Markdown", "Missings", "PooledArrays", "PrecompileTools", "PrettyTables", "Printf", "REPL", "Random", "Reexport", "SentinelArrays", "SortingAlgorithms", "Statistics", "TableTraits", "Tables", "Unicode"] -git-tree-sha1 = "04c738083f29f86e62c8afc341f0967d8717bdb8" -uuid = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" -version = "1.6.1" +version = "1.16.0" [[deps.DataStructures]] -deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +deps = ["OrderedCollections"] +git-tree-sha1 = "e86f4a2805f7f19bec5129bc9150c38208e5dc23" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.19.4" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -129,6 +120,13 @@ version = "1.0.0" [[deps.Dates]] deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +version = "1.11.0" + +[[deps.Dbus_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "473e9afc9cf30814eb67ffa5f2db7df82c3ad9fd" +uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" +version = "1.16.2+0" [[deps.DelimitedFiles]] deps = ["Mmap"] @@ -137,10 +135,9 @@ uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" version = "1.9.1" [[deps.DocStringExtensions]] -deps = ["LibGit2"] -git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" +git-tree-sha1 = "7442a5dfe1ebb773c29cc2962a8980f47221d76c" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.9.3" +version = "0.9.5" [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] @@ -155,123 +152,124 @@ version = "0.0.20230411+1" [[deps.ExceptionUnwrapping]] deps = ["Test"] -git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" +git-tree-sha1 = "d36f682e590a83d63d1c7dbd287573764682d12a" uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" -version = "0.1.9" +version = "0.1.11" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "4558ab818dcceaab612d1bb8c19cee87eda2b83c" +git-tree-sha1 = "8f05e9a2e7c2e3eb524102bb2926c5743c07fbe1" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.5.0+0" +version = "2.8.0+0" [[deps.FFMPEG]] deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" +git-tree-sha1 = "95ecf07c2eea562b5adbd0696af6db62c0f52560" uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" +version = "0.4.5" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libva_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "cac41ca6b2d399adfc95e51240566f8a60a80806" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+2" - -[[deps.FilePathsBase]] -deps = ["Compat", "Dates"] -git-tree-sha1 = "3bab2c5aa25e7840a4b065805c0cdfc01f3068d2" -uuid = "48062228-2e41-5def-b9a4-89aafe57970f" -version = "0.9.24" -weakdeps = ["Mmap", "Test"] - - [deps.FilePathsBase.extensions] - FilePathsBaseMmapExt = "Mmap" - FilePathsBaseTestExt = "Test" +version = "8.1.0+0" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" +version = "1.11.0" [[deps.FixedPointNumbers]] deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" +git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172" uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" +version = "0.8.5" [[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" +deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] +git-tree-sha1 = "f85dac9a96a01087df6e3a749840015a0ca3817d" uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" +version = "2.17.1+0" -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" +[[deps.Format]] +git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" +uuid = "1fa38f19-a742-5d3f-a2b9-30dd87b9d5f8" +version = "1.3.7" [[deps.FreeType2_jll]] deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d8db6a5a2fe1381c1ea4ef2cab7c69c2de7f9ea0" +git-tree-sha1 = "70329abc09b886fd2c5d94ad2d9527639c421e3e" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.13.1+0" +version = "2.14.3+1" [[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7a214fdac5ed5f59a22c2d9a885a16da1c74bbc7" uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" - -[[deps.Future]] -deps = ["Random"] -uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" +version = "1.0.17+0" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] +git-tree-sha1 = "9e0fb9e54594c47f278d75063980e43066e26e20" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.4.1+1" [[deps.GR]] -deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] -git-tree-sha1 = "d73afa4a2bb9de56077242d98cf763074ab9a970" +deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Qt6Wayland_jll", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] +git-tree-sha1 = "44716a1a667cb867ee0e9ec8edc31c3e4aa5afdc" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.72.9" +version = "0.73.24" +weakdeps = ["IJulia"] + + [deps.GR.extensions] + IJuliaExt = "IJulia" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "f61f768bf090d97c532d24b64e07b237e9bb7b6b" +git-tree-sha1 = "be8a1b8065959e24fdc1b51402f39f3b6f0f6653" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.72.9+0" +version = "0.73.24+0" -[[deps.Gettext_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046" -uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" -version = "0.21.0+0" +[[deps.GettextRuntime_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll"] +git-tree-sha1 = "45288942190db7c5f760f59c04495064eedf9340" +uuid = "b0724c58-0f36-5564-988d-3bb0596ebc4a" +version = "0.22.4+0" + +[[deps.Ghostscript_jll]] +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Zlib_jll"] +git-tree-sha1 = "38044a04637976140074d0b0621c1edf0eb531fd" +uuid = "61579ee1-b43e-5ca0-a5da-69d92c66a64b" +version = "9.55.1+0" [[deps.Git]] -deps = ["Git_jll"] -git-tree-sha1 = "51764e6c2e84c37055e846c516e9015b4a291c7d" +deps = ["Git_LFS_jll", "Git_jll", "JLLWrappers", "OpenSSH_jll"] +git-tree-sha1 = "824a1890086880696fc908fe12a17bcf61738bd8" uuid = "d7ba0133-e1db-5d97-8f8c-041e4b3a1eb2" -version = "1.3.0" +version = "1.5.0" + +[[deps.Git_LFS_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "bb8471f313ed941f299aa53d32a94ab3bee08844" +uuid = "020c3dae-16b3-5ae5-87b3-4cb189e250b2" +version = "3.7.0+0" [[deps.Git_jll]] deps = ["Artifacts", "Expat_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"] -git-tree-sha1 = "d8be4aab0f4e043cc40984e9097417307cce4c03" +git-tree-sha1 = "0dd4cfb426924210c8f42742751cbde74b27bfa3" uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb" -version = "2.36.1+2" +version = "2.54.0+0" [[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "d3b3624125c1474292d0d8ed0f65554ac37ddb23" +deps = ["Artifacts", "GettextRuntime_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] +git-tree-sha1 = "24f6def62397474a297bfcec22384101609142ed" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.74.0+2" +version = "2.86.3+0" [[deps.Graphite2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8a6dbda1fd736d60cc477d99f2e7a042acfa46e8" uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" +version = "1.3.15+0" [[deps.Grisu]] git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" @@ -279,49 +277,46 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[deps.HTTP]] -deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "cb56ccdd481c0dd7f975ad2b3b62d9eda088f7e2" +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "PrecompileTools", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "51059d23c8bb67911a2e6fd5130229113735fc7e" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.9.14" +version = "1.11.0" [[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll"] +git-tree-sha1 = "f923f9a774fcf3f5cb761bfa43aeadd689714813" uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" +version = "8.5.1+0" [[deps.Highlights]] deps = ["DocStringExtensions", "InteractiveUtils", "REPL"] -git-tree-sha1 = "0341077e8a6b9fc1c2ea5edc1e93a956d2aec0c7" +git-tree-sha1 = "9e13b8d8b1367d9692a90ea4711b4278e4755c32" uuid = "eafb193a-b7ab-5a9e-9068-77385905fa72" -version = "0.5.2" +version = "0.5.3" -[[deps.InlineStrings]] -git-tree-sha1 = "8f3d257792a522b4601c24a577954b0a8cd7334d" -uuid = "842dd82b-1e85-43dc-bf29-5d0ee9dffc48" -version = "1.4.5" +[[deps.IJulia]] +deps = ["Base64", "Conda", "Dates", "InteractiveUtils", "Logging", "Markdown", "Pkg", "PrecompileTools", "Printf", "REPL", "Random", "SHA", "Sockets", "UUIDs", "ZMQ"] +git-tree-sha1 = "102656c4efc9737f892e1bca7e66ae374c650740" +uuid = "7073ff75-c697-5162-941a-fcdaad2a7d2a" +version = "1.34.4" - [deps.InlineStrings.extensions] - ArrowTypesExt = "ArrowTypes" - ParsersExt = "Parsers" + [deps.IJulia.extensions] + IJuliaPythonCallExt = "PythonCall" + IJuliaReviseExt = "Revise" - [deps.InlineStrings.weakdeps] - ArrowTypes = "31f734f8-188a-4ce0-8406-c8a06bd891cd" - Parsers = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" + [deps.IJulia.weakdeps] + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + Revise = "295af30f-e4ad-537b-8983-00126c2a3abe" [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" - -[[deps.InvertedIndices]] -git-tree-sha1 = "6da3c4316095de0f5ee2ebd875df8721e7e0bdbe" -uuid = "41ab1584-1d38-5bbf-9106-f11c6c58b48f" -version = "1.3.1" +version = "1.11.0" [[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +git-tree-sha1 = "b2d91fe939cae05960e760110b328288867b5758" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" +version = "0.2.6" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" @@ -329,16 +324,16 @@ uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" [[deps.JLFzf]] -deps = ["Pipe", "REPL", "Random", "fzf_jll"] -git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" +deps = ["REPL", "Random", "fzf_jll"] +git-tree-sha1 = "82f7acdc599b65e0f8ccd270ffa1467c21cb647b" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" -version = "0.1.5" +version = "0.1.11" [[deps.JLLWrappers]] -deps = ["Preferences"] -git-tree-sha1 = "abc9885a7ca2052a736a600f7fa66209f96506e1" +deps = ["Artifacts", "Preferences"] +git-tree-sha1 = "0533e564aae234aff59ab625543145446d8b6ec2" uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.4.1" +version = "1.7.1" [[deps.JSON]] deps = ["Dates", "Mmap", "Parsers", "Unicode"] @@ -348,52 +343,50 @@ version = "0.21.4" [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "6f2675ef130a300a112286de91973805fcc5ffbc" +git-tree-sha1 = "c0c9b76f3520863909825cbecdef58cd63de705a" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.91+0" +version = "3.1.5+0" [[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "059aabebaa7c82ccb853dd4a0ee9d17796f7e1bc" uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" +version = "3.100.3+0" [[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "17b94ecafcfa45e8360a4fc9ca6b583b049e4e37" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" +version = "4.1.0+0" [[deps.LLVMOpenMP_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f689897ccbe049adb19a065c495e75f372ecd42b" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "eb62a3deb62fc6d8822c0c4bef73e4412419c5d8" uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" -version = "15.0.4+0" - -[[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" -uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.1+0" +version = "18.1.8+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "dda21b8cbd6a6c40d9d02a73230f9d70fed6918c" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.4.0" [[deps.Latexify]] -deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] -git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe" +deps = ["Format", "Ghostscript_jll", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] +git-tree-sha1 = "44f93c47f9cd6c7e431f2f2091fcba8f01cd7e8f" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.1" +version = "0.16.10" [deps.Latexify.extensions] DataFramesExt = "DataFrames" + SparseArraysExt = "SparseArrays" SymEngineExt = "SymEngine" + TectonicExt = "tectonic_jll" [deps.Latexify.weakdeps] DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" + tectonic_jll = "d7dd28d6-a5e6-559c-9131-7eb760cdacc5" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] @@ -403,16 +396,17 @@ version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" -version = "8.4.0+0" +version = "8.6.0+0" [[deps.LibGit2]] deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +version = "1.11.0" [[deps.LibGit2_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" -version = "1.6.4+0" +version = "1.7.2+0" [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] @@ -421,70 +415,54 @@ version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" +version = "1.11.0" [[deps.Libffi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c8da7e6a91781c41a863611c7e966098d783c57a" uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" - -[[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" -uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" +version = "3.4.7+0" [[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "6f73d1dd803986947b2c750138528a999a6c7733" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll", "Xorg_libXext_jll"] +git-tree-sha1 = "d36c21b9e7c172a44a10484125024495e2625ac0" uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.6.0+0" - -[[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" -uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.42.0+0" +version = "1.7.1+1" [[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c7cb1f5d892775ba13767a87c7ada0b980ea0a71" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "be484f5c92fad0bd8acfef35fe017900b0b73809" uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.16.1+2" +version = "1.18.0+0" [[deps.Libmount_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "cc3ad4faf30015a3e8094c9b5b7f19e85bdf2386" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.35.0+0" +version = "2.42.0+0" [[deps.Libtiff_jll]] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "2da088d113af58221c52828a80378e16be7d037a" +git-tree-sha1 = "f04133fe05eff1667d2054c53d59f9122383fe05" uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.5.1+1" +version = "4.7.2+0" [[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "d620582b1f0cbe2c72dd1d5bd195a9ce73370ab1" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" - -[[deps.LightXML]] -deps = ["Libdl", "XML2_jll"] -git-tree-sha1 = "aa971a09f0f1fe92fe772713a564aa48abe510df" -uuid = "9c8b4983-aa76-5018-a973-4c85ecc9e179" -version = "0.9.3" +version = "2.42.0+0" [[deps.LinearAlgebra]] deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" +version = "1.11.0" [[deps.LogExpFunctions]] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "c3ce8e7420b3a6e071e0fe4745f5d4300e37b13f" +git-tree-sha1 = "13ca9e2586b89836fd20cccf56e57e2b9ae7f38f" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.24" +version = "0.3.29" [deps.LogExpFunctions.extensions] LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" @@ -498,157 +476,164 @@ version = "0.3.24" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" +version = "1.11.0" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] -git-tree-sha1 = "cedb76b37bc5a6c702ade66be44f831fa23c681e" +git-tree-sha1 = "f00544d95982ea270145636c181ceda21c4e2575" uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "1.0.0" +version = "1.2.0" [[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "42324d08725e200c23d4dfb549e0d5d89dede2d2" +git-tree-sha1 = "1e0228a030642014fe5cfe68c2c0a818f9e3f522" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.10" +version = "0.5.16" [[deps.Markdown]] deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +version = "1.11.0" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "03a9b9718f5682ecb107ac9f7308991db4ce395b" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "8785729fa736197687541f7053f6d8ab7fc44f92" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.7" +version = "1.1.10" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" -version = "2.28.2+1" +version = "2.28.6+0" [[deps.Measures]] -git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" +git-tree-sha1 = "b513cedd20d9c914783d8ad83d08120702bf2c77" uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.2" +version = "0.3.3" [[deps.Missings]] deps = ["DataAPI"] -git-tree-sha1 = "f66bdc5de519e8f8ae43bdc598782d35a25b1272" +git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.1.0" +version = "1.2.0" [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" +version = "1.11.0" [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" -version = "2023.1.10" +version = "2023.12.12" [[deps.Mustache]] deps = ["Printf", "Tables"] -git-tree-sha1 = "821e918c170ead5298ff84bffee41dd28929a681" +git-tree-sha1 = "3cbd5dda543bc59f2e482607ccf84b633724fc32" uuid = "ffc61752-8dc7-55ee-8c37-f3e9cdd09e70" -version = "1.0.17" +version = "1.0.21" [[deps.NaNMath]] deps = ["OpenLibm_jll"] -git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4" +git-tree-sha1 = "9b8215b1ee9e78a293f99797cd31375471b2bcae" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.2" +version = "1.1.3" [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" -[[deps.OMJulia]] -deps = ["DataFrames", "DataStructures", "LightXML", "Random", "ZMQ"] -git-tree-sha1 = "2fc1ae96ca5045e7cc0b260609ef697f335438b1" -uuid = "0f4fe800-344e-11e9-2949-fb537ad918e1" -version = "0.3.3" - [[deps.Ogg_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b6aa4566bb7ae78498a5e68943863fa8b5231b59" uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" -version = "1.3.5+1" +version = "1.3.6+0" [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" -version = "0.3.23+4" +version = "0.3.27+1" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" version = "0.8.5+0" +[[deps.OpenSSH_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "OpenSSL_jll", "Zlib_jll"] +git-tree-sha1 = "57baa4b81a24c2910afbb6d853aa0685e4312bf7" +uuid = "9bd350c2-7e96-507f-8002-3f2e150b4e1b" +version = "10.3.1+0" + [[deps.OpenSSL]] -deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] -git-tree-sha1 = "51901a49222b09e3743c65b8847687ae5fc78eb2" +deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "NetworkOptions", "OpenSSL_jll", "Sockets"] +git-tree-sha1 = "1d1aaa7d449b58415f97d2839c318b70ffb525a0" uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" -version = "1.4.1" +version = "1.6.1" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "bbb5c2115d63c2f1451cb70e5ef75e8fe4707019" +git-tree-sha1 = "2ac022577e5eac7da040de17776d51bb770cd895" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.22+0" +version = "3.5.6+0" [[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e2bb57a313a74b8104064b7efd01406c0a50d2ff" uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" +version = "1.6.1+0" [[deps.OrderedCollections]] -git-tree-sha1 = "2e73fe17cac3c62ad1aebe70d44c963c3cfdc3e3" +git-tree-sha1 = "05868e21324cede2207c6f0f466b4bfef6d5e7ee" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.6.2" +version = "1.8.1" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" version = "10.42.0+1" +[[deps.Pango_jll]] +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "58e5ed5e386e156bd93e86b305ebd21ac63d2d04" +uuid = "36c8627f-9965-5494-a995-c6b170f724f3" +version = "1.57.1+0" + [[deps.Parsers]] deps = ["Dates", "PrecompileTools", "UUIDs"] -git-tree-sha1 = "716e24b21538abc91f6205fd1d8363f39b442851" +git-tree-sha1 = "5d5e0a78e971354b1c7bff0655d11fdc1b0e12c8" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.7.2" - -[[deps.Pipe]] -git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" -uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" -version = "1.3.0" +version = "2.8.4" [[deps.Pixman_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] -git-tree-sha1 = "64779bc4c9784fee475689a1752ef4d5747c5e87" +git-tree-sha1 = "db76b1ecd5e9715f3d043cec13b2ec93ce015d53" uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.42.2+0" +version = "0.44.2+0" [[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "Random", "SHA", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" -version = "1.10.0" +version = "1.11.0" +weakdeps = ["REPL"] + + [deps.Pkg.extensions] + REPLExt = "REPL" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] -git-tree-sha1 = "1f03a2d339f42dca4a4da149c7e15e9b896ad899" +git-tree-sha1 = "41031ef3a1be6f5bbbf3e8073f210556daeae5ca" uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "3.1.0" +version = "3.3.0" [[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227" +deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "StableRNGs", "Statistics"] +git-tree-sha1 = 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"Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "TOML", "UUIDs", "UnicodeFun", "Unzip"] +git-tree-sha1 = "cb20a4eacda080e517e4deb9cfb6c7c518131265" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.38.17" +version = "1.41.6" [deps.Plots.extensions] FileIOExt = "FileIO" @@ -664,47 +649,67 @@ version = "1.38.17" ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" -[[deps.PooledArrays]] -deps = ["DataAPI", "Future"] -git-tree-sha1 = "36d8b4b899628fb92c2749eb488d884a926614d3" -uuid = "2dfb63ee-cc39-5dd5-95bd-886bf059d720" -version = "1.4.3" - [[deps.PrecompileTools]] deps = ["Preferences"] -git-tree-sha1 = "9673d39decc5feece56ef3940e5dafba15ba0f81" +git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" -version = "1.1.2" +version = "1.2.1" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "7eb1686b4f04b82f96ed7a4ea5890a4f0c7a09f1" 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"Xorg_xcb_util_wm_jll", "Zlib_jll", "xkbcommon_jll"] -git-tree-sha1 = "364898e8f13f7eaaceec55fd3d08680498c0aa6e" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] +git-tree-sha1 = "d7a4bff94f42208ce3cf6bc8e4e7d1d663e7ee8b" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" -version = "6.4.2+3" +version = "6.10.2+1" + +[[deps.Qt6Declarative_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll", "Qt6ShaderTools_jll", "Qt6Svg_jll"] +git-tree-sha1 = "d5b7dd0e226774cbd87e2790e34def09245c7eab" +uuid = "629bc702-f1f5-5709-abd5-49b8460ea067" +version = "6.10.2+1" + +[[deps.Qt6ShaderTools_jll]] +deps = ["Artifacts", 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= "1.2.0" [[deps.Sockets]] uuid = "6462fe0b-24de-5631-8697-dd941f90decc" +version = "1.11.0" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" +git-tree-sha1 = "64d974c2e6fdf07f8155b5b2ca2ffa9069b608d9" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.1.1" +version = "1.2.2" [[deps.SparseArrays]] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" -version = "1.10.0" +version = "1.11.0" + +[[deps.StableRNGs]] +deps = ["Random"] +git-tree-sha1 = "4f96c596b8c8258cc7d3b19797854d368f243ddc" +uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" +version = "1.0.4" [[deps.Statistics]] -deps = ["LinearAlgebra", "SparseArrays"] +deps = ["LinearAlgebra"] +git-tree-sha1 = "ae3bb1eb3bba077cd276bc5cfc337cc65c3075c0" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" -version = "1.10.0" +version = "1.11.1" +weakdeps = ["SparseArrays"] + + [deps.Statistics.extensions] + SparseArraysExt = ["SparseArrays"] [[deps.StatsAPI]] deps = ["LinearAlgebra"] -git-tree-sha1 = "45a7769a04a3cf80da1c1c7c60caf932e6f4c9f7" +git-tree-sha1 = "178ed29fd5b2a2cfc3bd31c13375ae925623ff36" uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.6.0" +version = "1.8.0" [[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "75ebe04c5bed70b91614d684259b661c9e6274a4" +deps = ["AliasTables", "DataAPI", "DataStructures", "IrrationalConstants", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "aceda6f4e598d331548e04cc6b2124a6148138e3" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.34.0" +version = "0.34.10" [[deps.StringEncodings]] deps = ["Libiconv_jll"] @@ -814,16 +820,14 @@ git-tree-sha1 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"Wayland_jll", "xkbcommon_jll"] +git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" +uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" +version = "0.2.2+0" + +[[deps.libdrm_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libpciaccess_jll"] +git-tree-sha1 = "63aac0bcb0b582e11bad965cef4a689905456c03" +uuid = "8e53e030-5e6c-5a89-a30b-be5b7263a166" +version = "2.4.125+1" + +[[deps.libevdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "56d643b57b188d30cccc25e331d416d3d358e557" +uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" +version = "1.13.4+0" + [[deps.libfdk_aac_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "646634dd19587a56ee2f1199563ec056c5f228df" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" +version = "2.0.4+0" + +[[deps.libinput_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "91d05d7f4a9f67205bd6cf395e488009fe85b499" +uuid = "36db933b-70db-51c0-b978-0f229ee0e533" +version = "1.28.1+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "e51150d5ab85cee6fc36726850f0e627ad2e4aba" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.58+0" [[deps.libsodium_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "848ab3d00fe39d6fbc2a8641048f8f272af1c51e" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "011b0a7331b41c25524b64dc42afc9683ee89026" uuid = "a9144af2-ca23-56d9-984f-0d03f7b5ccf8" -version = "1.0.20+0" +version = "1.0.21+0" + +[[deps.libva_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll", "Xorg_libXext_jll", "Xorg_libXfixes_jll", "libdrm_jll"] +git-tree-sha1 = "7dbf96baae3310fe2fa0df0ccbb3c6288d5816c9" +uuid = "9a156e7d-b971-5f62-b2c9-67348b8fb97c" +version = "2.23.0+0" [[deps.libvorbis_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll"] +git-tree-sha1 = "11e1772e7f3cc987e9d3de991dd4f6b2602663a5" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" +version = "1.3.8+0" + +[[deps.mtdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "b4d631fd51f2e9cdd93724ae25b2efc198b059b1" +uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" +version = "1.1.7+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.52.0+1" +version = "1.59.0+0" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] @@ -1166,19 +1194,19 @@ uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" version = "17.4.0+2" [[deps.x264_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fea590b89e6ec504593146bf8b988b2c00922b2" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "14cc7083fc6dff3cc44f2bc435ee96d06ed79aa7" uuid = "1270edf5-f2f9-52d2-97e9-ab00b5d0237a" -version = "2021.5.5+0" +version = "10164.0.1+0" [[deps.x265_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "ee567a171cce03570d77ad3a43e90218e38937a9" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e7b67590c14d487e734dcb925924c5dc43ec85f3" uuid = "dfaa095f-4041-5dcd-9319-2fabd8486b76" -version = "3.5.0+0" +version = "4.1.0+0" [[deps.xkbcommon_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9ebfc140cc56e8c2156a15ceac2f0302e327ac0a" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] +git-tree-sha1 = "a1fc6507a40bf504527d0d4067d718f8e179b2b8" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+0" +version = "1.13.0+0"