diff --git a/setup.py b/setup.py
index eaa1c11..5de5e3c 100644
--- a/setup.py
+++ b/setup.py
@@ -53,7 +53,7 @@
         'progressbar2>=3.39',
         'joblib==0.11', # 0.12 seems to break the logging in parallel for loops
         'ete3>=3.1',
-        'bokeh==1.4.0'
+        'bokeh==3.8.2'
     ],
     classifiers=[
         "Programming Language :: Python :: 3",