From 253875afb89bb7e89354586a0fab545120d9e921 Mon Sep 17 00:00:00 2001 From: sbabyanusha Date: Mon, 27 Jul 2026 15:29:16 -0400 Subject: [PATCH] Fix validation error-1 --- public/blca_tcga_pub/case_lists/cases_all.txt | 2 +- public/blca_tcga_pub/data_clinical_sample.txt | 4 ++-- public/brca_aurora_2023/meta_log2_cna.txt | 2 +- public/brca_aurora_2023/meta_study.txt | 2 +- public/crc_orion_2024/data_clinical_patient.txt | 2 +- public/crc_orion_2024/meta_clinical_patient.txt | 2 +- public/crc_orion_2024/meta_clinical_sample.txt | 2 +- 7 files changed, 8 insertions(+), 8 deletions(-) diff --git a/public/blca_tcga_pub/case_lists/cases_all.txt b/public/blca_tcga_pub/case_lists/cases_all.txt index 7fbe00acca..146b0fb1b4 100755 --- a/public/blca_tcga_pub/case_lists/cases_all.txt +++ b/public/blca_tcga_pub/case_lists/cases_all.txt @@ -3,4 +3,4 @@ stable_id: blca_tcga_pub_all case_list_name: All samples case_list_description: All samples (131 samples) case_list_category: all_cases_in_study -case_list_ids: TCGA-GD-A3OP-01 TCGA-GD-A3OQ-01 TCGA-BT-A20Q-01 TCGA-FD-A3SS-01 TCGA-CF-A3MI-01 TCGA-DK-A3IN-01 TCGA-BT-A20U-01 TCGA-E5-A2PC-01 TCGA-G2-A3IE-01 TCGA-FD-A3SL-01 TCGA-DK-A1A5-01 TCGA-BT-A20O-01 TCGA-BT-A42C-01 TCGA-FD-A3SQ-01 TCGA-G2-A2EK-01 TCGA-GV-A3JZ-01 TCGA-CU-A3YL-01 TCGA-BT-A3PH-01 TCGA-GV-A3JW-01 TCGA-BL-A13J-01 TCGA-DK-A1A3-01 TCGA-H4-A2HO-01 TCGA-FD-A3SO-01 TCGA-GD-A2C5-01 TCGA-GC-A3OO-01 TCGA-FD-A3SR-01 TCGA-GC-A3WC-01 TCGA-G2-A2EC-01 TCGA-BT-A20N-01 TCGA-G2-A2EO-01 TCGA-G2-A2EJ-01 TCGA-FD-A3SJ-01 TCGA-BT-A2LD-01 TCGA-GC-A3RB-01 TCGA-FD-A3N5-01 TCGA-FD-A3NA-01 TCGA-FD-A3SN-01 TCGA-G2-A3IB-01 TCGA-DK-A1AC-01 TCGA-CU-A0YR-01 TCGA-BT-A42B-01 TCGA-DK-A3WX-01 TCGA-G2-A2EF-01 TCGA-BT-A3PJ-01 TCGA-CU-A3KJ-01 TCGA-DK-A3WW-01 TCGA-CF-A3MH-01 TCGA-GV-A3QK-01 TCGA-GV-A40E-01 TCGA-DK-A1A6-01 TCGA-DK-A1A7-01 TCGA-G2-A2ES-01 TCGA-DK-A2I4-01 TCGA-BT-A2LB-01 TCGA-DK-A2HX-01 TCGA-DK-A1AG-01 TCGA-DK-A2I1-01 TCGA-DK-A1AD-01 TCGA-C4-A0F6-01 TCGA-GV-A3QF-01 TCGA-CU-A0YO-01 TCGA-CU-A3QU-01 TCGA-DK-A2I2-01 TCGA-CF-A1HS-01 TCGA-DK-A3IQ-01 TCGA-CF-A27C-01 TCGA-BL-A3JM-01 TCGA-BL-A13I-01 TCGA-GD-A3OS-01 TCGA-FD-A3B8-01 TCGA-DK-A3WY-01 TCGA-BL-A0C8-01 TCGA-GC-A3RC-01 TCGA-G2-A3VY-01 TCGA-BT-A3PK-01 TCGA-HQ-A2OE-01 TCGA-E7-A3Y1-01 TCGA-C4-A0F1-01 TCGA-DK-A1AA-01 TCGA-DK-A1AF-01 TCGA-GV-A3QG-01 TCGA-H4-A2HQ-01 TCGA-C4-A0F7-01 TCGA-FT-A3EE-01 TCGA-FD-A3B7-01 TCGA-GC-A3RD-01 TCGA-DK-A3IV-01 TCGA-DK-A1AB-01 TCGA-DK-A1AE-01 TCGA-K4-A3WU-01 TCGA-K4-A3WV-01 TCGA-C4-A0F0-01 TCGA-E7-A3X6-01 TCGA-DK-A3IU-01 TCGA-DK-A3IS-01 TCGA-BT-A20P-01 TCGA-DK-A3IT-01 TCGA-BT-A0YX-01 TCGA-GC-A3I6-01 TCGA-GC-A3YS-01 TCGA-DK-A3IM-01 TCGA-GC-A3BM-01 TCGA-BT-A20T-01 TCGA-GV-A3JV-01 TCGA-FD-A3B3-01 TCGA-FD-A3B5-01 TCGA-DK-A3X2-01 TCGA-DK-A3IL-01 TCGA-CF-A3MF-01 TCGA-DK-A3IK-01 TCGA-BT-A20W-01 TCGA-GV-A40G-01 TCGA-BT-A0S7-01 TCGA-BT-A20J-01 TCGA-DK-A2I6-01 TCGA-K4-A3WS-01 TCGA-DK-A3X1-01 TCGA-CU-A0YN-01 TCGA-FJ-A3Z7-01 TCGA-BT-A20R-01 TCGA-FJ-A3ZF-01 TCGA-FD-A3SM-01 TCGA-GV-A3QI-01 TCGA-CF-A1HR-01 TCGA-GV-A3JX-01 TCGA-FD-A3B6-01 TCGA-CF-A3MG-01 TCGA-GV-A3QH-01 TCGA-FD-A3SP-01 TCGA-FJ-A3ZE-01 TCGA-GU-A42R-01 +case_list_ids: TCGA-GD-A3OP-01 TCGA-GD-A3OQ-01 TCGA-BT-A20Q-01 TCGA-FD-A3SS-01 TCGA-CF-A3MI-01 TCGA-DK-A3IN-01 TCGA-BT-A20U-01 TCGA-E5-A2PC-01 TCGA-G2-A3IE-01 TCGA-FD-A3SL-01 TCGA-DK-A1A5-01 TCGA-BT-A20O-01 TCGA-BT-A42C-01 TCGA-FD-A3SQ-01 TCGA-G2-A2EK-01 TCGA-GV-A3JZ-01 TCGA-CU-A3YL-01 TCGA-BT-A3PH-01 TCGA-GV-A3JW-01 TCGA-BL-A13J-01 TCGA-DK-A1A3-01 TCGA-H4-A2HO-01 TCGA-FD-A3SO-01 TCGA-GD-A2C5-01 TCGA-GC-A3OO-01 TCGA-FD-A3SR-01 TCGA-GC-A3WC-01 TCGA-G2-A2EC-01 TCGA-BT-A20N-01 TCGA-G2-A2EO-01 TCGA-G2-A2EJ-01 TCGA-FD-A3SJ-01 TCGA-BT-A2LD-01 TCGA-GC-A3RB-01 TCGA-FD-A3N5-01 TCGA-FD-A3NA-01 TCGA-FD-A3SN-01 TCGA-G2-A3IB-01 TCGA-DK-A1AC-01 TCGA-CU-A0YR-01 TCGA-BT-A42B-01 TCGA-DK-A3WX-01 TCGA-G2-A2EF-01 TCGA-BT-A3PJ-01 TCGA-CU-A3KJ-01 TCGA-DK-A3WW-01 TCGA-CF-A3MH-01 TCGA-GV-A3QK-01 TCGA-GV-A40E-01 TCGA-DK-A1A6-01 TCGA-DK-A1A7-01 TCGA-G2-A2ES-01 TCGA-DK-A2I4-01 TCGA-BT-A2LB-01 TCGA-DK-A2HX-01 TCGA-DK-A1AG-01 TCGA-DK-A2I1-01 TCGA-DK-A1AD-01 TCGA-C4-A0F6-01 TCGA-GV-A3QF-01 TCGA-CU-A0YO-01 TCGA-CU-A3QU-01 TCGA-DK-A2I2-01 TCGA-CF-A1HS-01 TCGA-DK-A3IQ-01 TCGA-CF-A27C-01 TCGA-BL-A3JM-01 TCGA-BL-A13I-01 TCGA-GD-A3OS-01 TCGA-FD-A3B8-01 TCGA-DK-A3WY-01 TCGA-BL-A0C8-01 TCGA-GC-A3RC-01 TCGA-G2-A3VY-01 TCGA-BT-A3PK-01 TCGA-HQ-A2OE-01 TCGA-E7-A3Y1-01 TCGA-C4-A0F1-01 TCGA-DK-A1AA-01 TCGA-DK-A1AF-01 TCGA-GV-A3QG-01 TCGA-H4-A2HQ-01 TCGA-C4-A0F7-01 TCGA-FT-A3EE-01 TCGA-FD-A3B7-01 TCGA-GC-A3RD-01 TCGA-DK-A3IV-01 TCGA-DK-A1AB-01 TCGA-DK-A1AE-01 TCGA-K4-A3WU-01 TCGA-K4-A3WV-01 TCGA-C4-A0F0-01 TCGA-E7-A3X6-01 TCGA-DK-A3IU-01 TCGA-DK-A3IS-01 TCGA-BT-A20P-01 TCGA-DK-A3IT-01 TCGA-BT-A0YX-01 TCGA-GC-A3I6-01 TCGA-GC-A3YS-01 TCGA-DK-A3IM-01 TCGA-GC-A3BM-01 TCGA-BT-A20T-01 TCGA-GV-A3JV-01 TCGA-FD-A3B3-01 TCGA-FD-A3B5-01 TCGA-DK-A3X2-01 TCGA-DK-A3IL-01 TCGA-CF-A3MF-01 TCGA-DK-A3IK-01 TCGA-BT-A20W-01 TCGA-GV-A40G-01 TCGA-BT-A0S7-01 TCGA-BT-A20J-01 TCGA-DK-A2I6-01 TCGA-K4-A3WS-01 TCGA-DK-A3X1-01 TCGA-CU-A0YN-01 TCGA-FJ-A3Z7-01 TCGA-BT-A20R-01 TCGA-FJ-A3ZF-01 TCGA-FD-A3SM-01 TCGA-GV-A3QI-01 TCGA-CF-A1HR-01 TCGA-GV-A3JX-01 TCGA-FD-A3B6-01 TCGA-CF-A3MG-01 TCGA-GV-A3QH-01 TCGA-FD-A3SP-01 TCGA-FJ-A3ZE-01 TCGA-GU-A42R-01 \ No newline at end of file diff --git a/public/blca_tcga_pub/data_clinical_sample.txt b/public/blca_tcga_pub/data_clinical_sample.txt index 1aa869a421..ef218cd61c 100644 --- a/public/blca_tcga_pub/data_clinical_sample.txt +++ b/public/blca_tcga_pub/data_clinical_sample.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:94e7b3ce0ae9d2e41d2aa3984236d2833e1cc5ca243dfab22fddbb23261a2f9f -size 26054 +oid sha256:fc4eaa73d708c94e13ae5c8a37d7a18bf266c9bfa902cb4351ed905dba808b27 +size 25875 diff --git a/public/brca_aurora_2023/meta_log2_cna.txt b/public/brca_aurora_2023/meta_log2_cna.txt index 0435e36b72..276e9a05bd 100644 --- a/public/brca_aurora_2023/meta_log2_cna.txt +++ b/public/brca_aurora_2023/meta_log2_cna.txt @@ -2,7 +2,7 @@ cancer_study_identifier: brca_aurora_2023 genetic_alteration_type: COPY_NUMBER_ALTERATION datatype: LOG2-VALUE stable_id: log2CNA -show_profile_in_analysis_tab: true +show_profile_in_analysis_tab: false profile_description: Log2 copy-number values for each gene profile_name: Copy-number alterations (log2) data_filename: data_log2_cna.txt diff --git a/public/brca_aurora_2023/meta_study.txt b/public/brca_aurora_2023/meta_study.txt index b646fcae79..fb5f693f12 100644 --- a/public/brca_aurora_2023/meta_study.txt +++ b/public/brca_aurora_2023/meta_study.txt @@ -1,7 +1,7 @@ type_of_cancer: brca cancer_study_identifier: brca_aurora_2023 name: Metastatic Breast Cancer (AURORA US Network, Nat Cancer 2023) -description: Whole exome and low-pass whole genome sequencing of 55 patients with metastatic breast cancer (53 primary cancers and 102 metastases) and their matched normals. Retrospective Tissue Collection; an initiative of the Breast Cancer Research Foundation. +description: Whole-exome and low-pass whole genome sequencing of 55 patients with metastatic breast cancer (53 primary cancers and 102 metastases) and their matched normals. Retrospective Tissue Collection; an initiative of the Breast Cancer Research Foundation. reference_genome: hg38 pmid: 36585450 citation: Garcia-Recio et al. Nat Cancer 2023 diff --git a/public/crc_orion_2024/data_clinical_patient.txt b/public/crc_orion_2024/data_clinical_patient.txt index d714e251bb..5036cad802 100644 --- a/public/crc_orion_2024/data_clinical_patient.txt +++ b/public/crc_orion_2024/data_clinical_patient.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:9f858a9b0ef09fa2addac02a0f054164017ccd64799b5691f11d3d4c1fa73703 +oid sha256:dee6a8dd0e6a3c587edb7d366434ca2045ffda2f2d2f2b9949d847b507df70c9 size 16869 diff --git a/public/crc_orion_2024/meta_clinical_patient.txt b/public/crc_orion_2024/meta_clinical_patient.txt index 7ccffc882d..2f01363356 100644 --- a/public/crc_orion_2024/meta_clinical_patient.txt +++ b/public/crc_orion_2024/meta_clinical_patient.txt @@ -1,4 +1,4 @@ cancer_study_identifier: crc_orion_2024 genetic_alteration_type: CLINICAL datatype: PATIENT_ATTRIBUTES -data_filename: data_patients.txt +data_filename: data_clinical_patient.txt diff --git a/public/crc_orion_2024/meta_clinical_sample.txt b/public/crc_orion_2024/meta_clinical_sample.txt index 2349e67687..0c30485846 100644 --- a/public/crc_orion_2024/meta_clinical_sample.txt +++ b/public/crc_orion_2024/meta_clinical_sample.txt @@ -1,4 +1,4 @@ cancer_study_identifier: crc_orion_2024 genetic_alteration_type: CLINICAL datatype: SAMPLE_ATTRIBUTES -data_filename: data_samples.txt +data_filename: data_clinical_sample.txt