From 73f90ef8c4952465d168b5eb914404a7c76e9c00 Mon Sep 17 00:00:00 2001 From: Tobias Kuhn Date: Tue, 7 Jul 2026 13:42:42 +0200 Subject: [PATCH 1/2] Pin pubmate to v0.2.2 (drift-aware, link-preserving publishing) v0.2.2 lands eu-parc/pubmate#8: publish_incremental()/fingerprint_term() detect content or wrapper drift (template, part-of, type, license) on already-published terms and supersede them in place, keeping thing URIs and resolving inter-term links. Replaces the append-only v0.2.1. Co-Authored-By: Claude Opus 4.8 --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 52a33c4..2f7270b 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -10,4 +10,4 @@ dependencies = [ ] [tool.uv.sources] -pubmate = { git = "https://github.com/eu-parc/pubmate.git", tag = "v0.2.1" } +pubmate = { git = "https://github.com/eu-parc/pubmate.git", tag = "v0.2.2" } From 2fbf4aecdb42227ffc5b26765a47b06b1653bf3f Mon Sep 17 00:00:00 2001 From: Tobias Kuhn Date: Mon, 6 Jul 2026 16:49:53 +0200 Subject: [PATCH 2/2] Point NANOPUB_TEMPLATE at the updated "Defining a biochementity" template Update the nt:wasCreatedFromTemplate tag stamped on every minted nanopub to the new published assertion template (RALm3XedpEbjtQy1nPJEQpOdsV0hPm5APkvvym-7P1Vpk), so Nanodash renders the terms with the current form. Co-Authored-By: Claude Opus 4.8 --- Makefile | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/Makefile b/Makefile index 1e3838e..23d18af 100644 --- a/Makefile +++ b/Makefile @@ -32,7 +32,7 @@ MIGRATE_SUGGESTER ?= https://orcid.org/0000-0001-8327-0142 # "Defining a biochementity" assertion template, so Nanodash renders them with # the matching form). NANOPUB_TYPE ?= https://w3id.org/peh/terms/BioChemEntity -NANOPUB_TEMPLATE ?= https://w3id.org/np/RAhSlIuuw5YqmMoyyvmy5GL3qIhs7sp14i6x2y3DCOhXM +NANOPUB_TEMPLATE ?= https://w3id.org/np/RALm3XedpEbjtQy1nPJEQpOdsV0hPm5APkvvym-7P1Vpk # Vocabulary each term links to via dcterms:isPartOf in its assertion. NANOPUB_PART_OF ?= https://w3id.org/spaces/biochementity/r/vocabulary DRY ?=