diff --git a/README.md b/README.md index a26360b..38dd933 100644 --- a/README.md +++ b/README.md @@ -5,7 +5,7 @@
- nine feature areas for Xenium I/O, multimodal analysis, CCI, pathway topology, contour geometry, GMI inference, mechanostress analysis, and external workflow bridges. + Load, analyze, and interpret 10x Genomics Xenium spatial data in one Python toolkit.
@@ -32,14 +32,10 @@
-
+
- Figure 1. pyXenium summarizes Xenium I/O, multimodal analysis, spatial topology, contour-aware inference, mechanostress analysis, and external workflow bridges in one submission-ready overview. -
- -pyXenium is a Python toolkit for **10x Genomics Xenium** organized around nine major sections. +pyXenium is organized around nine major sections, each with a canonical entry point: | Section | Canonical entry | Start here | | --- | --- | --- | diff --git a/docs/_static/figures/pyxenium-nine-feature-overview.png b/docs/_static/figures/pyxenium-nine-feature-overview.png deleted file mode 100644 index 1063984..0000000 Binary files a/docs/_static/figures/pyxenium-nine-feature-overview.png and /dev/null differ diff --git a/docs/_static/figures/pyxenium-nine-feature-overview.svg b/docs/_static/figures/pyxenium-nine-feature-overview.svg new file mode 100644 index 0000000..ef4dac6 --- /dev/null +++ b/docs/_static/figures/pyxenium-nine-feature-overview.svg @@ -0,0 +1,2 @@ + + \ No newline at end of file diff --git a/docs/index.md b/docs/index.md index 310e0b9..f799ec5 100644 --- a/docs/index.md +++ b/docs/index.md @@ -33,7 +33,7 @@ changelog -```{figure} _static/figures/pyxenium-nine-feature-overview.png +```{figure} _static/figures/pyxenium-nine-feature-overview.svg :alt: pyXenium nine-feature overview figure :class: pyxenium-overview-image :figclass: pyxenium-overview-figure diff --git a/docs/user-guide/nine-feature-overview.md b/docs/user-guide/nine-feature-overview.md index 6e5cf4c..14dbcb5 100644 --- a/docs/user-guide/nine-feature-overview.md +++ b/docs/user-guide/nine-feature-overview.md @@ -1,6 +1,6 @@ # Nine-feature overview -```{figure} ../_static/figures/pyxenium-nine-feature-overview.png +```{figure} ../_static/figures/pyxenium-nine-feature-overview.svg :alt: pyXenium nine-feature overview figure :class: pyxenium-overview-image :figclass: pyxenium-overview-figure