From 0866af43f18dd8feec3f28c06f385d9c7e22a35a Mon Sep 17 00:00:00 2001 From: Narein Rao Date: Fri, 26 Jun 2026 07:34:29 -0500 Subject: [PATCH 1/4] Add Renoir to scverse ecosystem --- packages/renoir/meta.yaml | 14 ++++++++++++++ 1 file changed, 14 insertions(+) create mode 100644 packages/renoir/meta.yaml diff --git a/packages/renoir/meta.yaml b/packages/renoir/meta.yaml new file mode 100644 index 0000000..4d050cc --- /dev/null +++ b/packages/renoir/meta.yaml @@ -0,0 +1,14 @@ +name: Renoir +github: Zafar-Lab/Renoir +pypi: renoir-spatial +docs: https://renoir.readthedocs.io/en/latest/ +version: "1.0.0" +authors: + - narein97 +description: > + Information-theory-based scoring framework for spatial cell-cell + communication analysis. Renoir computes neighbourhood activity scores + for ligand-target pairs across spatial transcriptomics platforms + (Visium, VisiumHD, CosMx, Xenium), identifies communication domains + via Leiden clustering, and ranks ligands driving domain-specific + signalling. Built on AnnData and SpatialData. \ No newline at end of file From 26050e89469bc52f65592970ca699d24ffef6f79 Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Fri, 26 Jun 2026 12:41:03 +0000 Subject: [PATCH 2/4] [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --- packages/renoir/meta.yaml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/packages/renoir/meta.yaml b/packages/renoir/meta.yaml index 4d050cc..8c7db13 100644 --- a/packages/renoir/meta.yaml +++ b/packages/renoir/meta.yaml @@ -1,14 +1,14 @@ name: Renoir github: Zafar-Lab/Renoir -pypi: renoir-spatial +pypi: renoir-spatial docs: https://renoir.readthedocs.io/en/latest/ version: "1.0.0" authors: - - narein97 + - narein97 description: > Information-theory-based scoring framework for spatial cell-cell communication analysis. Renoir computes neighbourhood activity scores for ligand-target pairs across spatial transcriptomics platforms (Visium, VisiumHD, CosMx, Xenium), identifies communication domains via Leiden clustering, and ranks ligands driving domain-specific - signalling. Built on AnnData and SpatialData. \ No newline at end of file + signalling. Built on AnnData and SpatialData. From 368e4fb81f53c1db6690327f26d9ea6d39262b34 Mon Sep 17 00:00:00 2001 From: Narein Rao Date: Fri, 26 Jun 2026 08:02:31 -0500 Subject: [PATCH 3/4] Update meta.yaml --- packages/renoir/meta.yaml | 30 ++++++++++++++++++++++-------- 1 file changed, 22 insertions(+), 8 deletions(-) diff --git a/packages/renoir/meta.yaml b/packages/renoir/meta.yaml index 8c7db13..9c3155d 100644 --- a/packages/renoir/meta.yaml +++ b/packages/renoir/meta.yaml @@ -1,14 +1,28 @@ name: Renoir -github: Zafar-Lab/Renoir -pypi: renoir-spatial -docs: https://renoir.readthedocs.io/en/latest/ -version: "1.0.0" -authors: - - narein97 -description: > - Information-theory-based scoring framework for spatial cell-cell +description: | + An information-theory-based scoring framework for spatial cell-cell communication analysis. Renoir computes neighbourhood activity scores for ligand-target pairs across spatial transcriptomics platforms (Visium, VisiumHD, CosMx, Xenium), identifies communication domains via Leiden clustering, and ranks ligands driving domain-specific signalling. Built on AnnData and SpatialData. +project_home: https://github.com/Zafar-Lab/Renoir +documentation_home: https://renoir.readthedocs.io/en/latest/ +tutorials_home: https://renoir.readthedocs.io/en/latest/ +publications: + - 10.1038/s41467-026-72388-7 +install: + pypi: renoir-spatial +tags: + - spatial transcriptomics + - cell-cell communication + - ligand-target + - spatial omics +license: MIT +version: v1.0.0 +contact: + - narein97 +test_command: | + pip install renoir-spatial + pytest -v -m "not integration" +category: ecosystem From eb5593f591e35f4d4a145fd9d73c55fcf1cdc848 Mon Sep 17 00:00:00 2001 From: Narein Rao Date: Fri, 26 Jun 2026 08:05:59 -0500 Subject: [PATCH 4/4] Update meta.yaml --- packages/renoir/meta.yaml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/packages/renoir/meta.yaml b/packages/renoir/meta.yaml index 9c3155d..6ac32a4 100644 --- a/packages/renoir/meta.yaml +++ b/packages/renoir/meta.yaml @@ -7,8 +7,8 @@ description: | via Leiden clustering, and ranks ligands driving domain-specific signalling. Built on AnnData and SpatialData. project_home: https://github.com/Zafar-Lab/Renoir -documentation_home: https://renoir.readthedocs.io/en/latest/ -tutorials_home: https://renoir.readthedocs.io/en/latest/ +documentation_home: https://renoir.readthedocs.io/ +tutorials_home: https://renoir.readthedocs.io/ publications: - 10.1038/s41467-026-72388-7 install: