I have used cell2location to perform label transfer on my 10x Visium dataset. I am interested in performing cell type proximity / co-localization analysis based on these results, to identify which cell types tend to appear together in spatial regions.
However, I am unsure about the best practice for doing this using cell2location outputs. Any suggestions or best practices would be greatly appreciated.
I have used cell2location to perform label transfer on my 10x Visium dataset. I am interested in performing cell type proximity / co-localization analysis based on these results, to identify which cell types tend to appear together in spatial regions.
However, I am unsure about the best practice for doing this using cell2location outputs. Any suggestions or best practices would be greatly appreciated.