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Center for Admixture Science and Technology

8 followers
http://admixgenomics.ucsd.edu/

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haptools haptools Public

Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis

Python 27 5

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Showing 10 of 16 repositories

pgb Public
Interactive Pangenome Graph Visualization App

CAST-genomics/pgb's past year of commit activity

JavaScript 0 MIT 0 3 1 Updated Aug 21, 2026
PangenomeAPI Public

CAST-genomics/PangenomeAPI's past year of commit activity

JavaScript 1 0 0 1 Updated Aug 20, 2026
sequence-tube-map-spike Public
Standalone build of the sequence tube map viewer for PGB — a magnifying glass on a single minigraph node.

CAST-genomics/sequence-tube-map-spike's past year of commit activity

TypeScript 0 0 5 0 Updated Aug 19, 2026
panCT Public
Our pangenome analysis toolkit

CAST-genomics/panCT's past year of commit activity

Python 2 0 5 5 Updated Jul 23, 2026
pipsort Public

CAST-genomics/pipsort's past year of commit activity

C++ 4 AGPL-3.0 0 0 0 Updated Jul 8, 2026
haptools Public
Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis

CAST-genomics/haptools's past year of commit activity

Python 27 MIT 5 11 (1 issue needs help) 3 Updated Dec 15, 2025
CAST-genomics.github.io Public
CAST website

CAST-genomics/CAST-genomics.github.io's past year of commit activity

HTML 0 2 0 0 Updated Nov 14, 2025
pgb-mvp Public Forked from turner/pg-spike-pan-zoom
DEPRICATED - pangenome browser mvp

CAST-genomics/pgb-mvp's past year of commit activity

JavaScript 0 2 0 1 Updated Sep 1, 2025
hla_haplotypes Public

CAST-genomics/hla_haplotypes's past year of commit activity

0 0 0 0 Updated Mar 4, 2025
personal-genomics-textbook Public
Textbook for CSE284: Personal Genomics

CAST-genomics/personal-genomics-textbook's past year of commit activity

Jupyter Notebook 2 MIT 1 1 1 Updated Oct 27, 2024

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