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Does two-level write transforms.csv and accept the long CSV, and do the twolevel_* post-processing scripts delegate to the shared scripts?

wayfinder:grillingWayfinder ticket: grilling (HITL)Wayfinder ticket: grilling (HITL)

Status: Open.

#149 In CoBrALab/optimized_antsMultivariateTemplateConstruction;

· gdevenyi opened on Sep 23, 2026

Which determinants does each strategy produce, and how are they computed?

wayfinder:grillingWayfinder ticket: grilling (HITL)Wayfinder ticket: grilling (HITL)

Status: Open.

#148 In CoBrALab/optimized_antsMultivariateTemplateConstruction;

· gdevenyi opened on Sep 22, 2026

Wayfinder: alternative longitudinal strategies (Registration Chain, Tamarack, Overlapping group-wise)

wayfinder:mapWayfinder map: index of a planning effortWayfinder map: index of a planning effort

Status: Open.

#138 In CoBrALab/optimized_antsMultivariateTemplateConstruction;

· gdevenyi opened on Sep 21, 2026

For modelbuild_input_from_bids.sh, allow users to specify more details for files to comb

Status: Open.

#133 In CoBrALab/optimized_antsMultivariateTemplateConstruction;

· danyluik opened on Mar 4, 2026

In twolevel_modelbuild and twolevel_dbm if non-validated args are passed, print a warning to user

Status: Open.

#130 In CoBrALab/optimized_antsMultivariateTemplateConstruction;

· CMonnin opened on Oct 29, 2025

Redo volgenmodel method

Status: Open.

#129 In CoBrALab/optimized_antsMultivariateTemplateConstruction;

· gdevenyi opened on Oct 29, 2025

Switch to new upstream antsRegistration_affine_SyN source for submodule

Status: Open.

#128 In CoBrALab/optimized_antsMultivariateTemplateConstruction;

· gdevenyi opened on Oct 29, 2025

Allow for different registration settings for first vs second level

Status: Open.

#127 In CoBrALab/optimized_antsMultivariateTemplateConstruction;

· gdevenyi opened on Sep 29, 2025

Use line-by-line hashing of input file for twolevel_modelbuild.sh to generate reproducable "new file names" instead of counting lines

Status: Open.

#126 In CoBrALab/optimized_antsMultivariateTemplateConstruction;

· gdevenyi opened on Sep 22, 2025

Test if everything can be run with --float by default

Status: Open.

#124 In CoBrALab/optimized_antsMultivariateTemplateConstruction;

· gdevenyi opened on Aug 14, 2025

Optional field-of-view correction

Status: Open.

#121 In CoBrALab/optimized_antsMultivariateTemplateConstruction;

· gdevenyi opened on Mar 11, 2025

Provide a docker/singularity container and use it as a $COMMAND_PREFIX wrapper

Status: Open.

#120 In CoBrALab/optimized_antsMultivariateTemplateConstruction;

· gdevenyi opened on Feb 24, 2025