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Feature-IOPS-4001-Update-CodeSystem-mds-questiontag-genomics-to-align-with-MDS-v1.0.5 #191

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Merged
KazeemHamzat merged 11 commits into from
Jan 20, 2026
Merged

Feature-IOPS-4001-Update-CodeSystem-mds-questiontag-genomics-to-align-with-MDS-v1.0.5 #191

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1ec0bab
Update CodeSystem-Genomics-mds-questiontag
KazeemHamzat Dec 15, 2025
00695a0
Merge branch 'main' of https://github.com/NHSDigital/NHSDigital-FHIR-…
KazeemHamzat Dec 15, 2025
b981c8b
Remove ValueSet-Genomics-mds-questiontag
KazeemHamzat Dec 16, 2025
017f9b9
Update Display names
KazeemHamzat Dec 16, 2025
870e0fd
Update Observation Examples to MDS CodeSystem Tag
KazeemHamzat Dec 16, 2025
8f45b7c
Updaate Display Names for TR and PCI
KazeemHamzat Dec 16, 2025
35c2325
Merge branch 'Feature-IOPS-3525-Map-FHIR-Observation-Examples-to-MDS'…
KazeemHamzat Dec 16, 2025
1849126
Feedback
KazeemHamzat Jan 19, 2026
db4c581
Merge branch 'main' of https://github.com/NHSDigital/NHSDigital-FHIR-…
KazeemHamzat Jan 19, 2026
78d6de1
Update Observation-NeoplasticCell-Example.json
omarisgreat Jan 20, 2026
2044b7c
Update Observation-NeoplasticCellKayBurbridge-Example.json
omarisgreat Jan 20, 2026
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2 changes: 1 addition & 1 deletion CodeSystem/CodeSystem-Genomics-mds-questiontag.json
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Expand Up @@ -204,7 +204,7 @@
},
{
"code": "P-37",
"display": "Patient - Locaal Pedigree / Family identifier",
"display": "Patient - Local Pedigree / Family identifier",
"definition": "Patient's pedigree or family identifying id."
},
{
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8 changes: 7 additions & 1 deletion Observation/Observation-Cellularity-Example.json
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},
"status": "final",
"code": {
"text": "Cellularity"
"coding": [
{
"system": "http://snomed.info/sct",
"code": "1022461000000100",
"display": "Nucleated red blood cell count"
}
]
},
"subject": {
"reference": "Patient/Patient-ZelmaHadjkiss-Example",
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8 changes: 7 additions & 1 deletion Observation/Observation-CellularityKayBurbridge-Example.json
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},
"status": "final",
"code": {
"text": "Cellularity"
"coding": [
{
"system": "http://snomed.info/sct",
"code": "1022461000000100",
"display": "Nucleated red blood cell count"
}
]
},
"subject": {
"reference": "Patient/Patient-KayBurbridge-Example",
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8 changes: 7 additions & 1 deletion Observation/Observation-CellularityPatrickSammy-Example.json
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},
"status": "final",
"code": {
"text": "Cellularity"
"coding": [
{
"system": "http://snomed.info/sct",
"code": "1022461000000100",
"display": "Nucleated red blood cell count"
}
]
},
"subject": {
"reference": "Patient/Patient-PatrickSammy-Example",
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4 changes: 2 additions & 2 deletions Observation/Observation-DelayedSpeechLanguageDevt-Example.json
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Expand Up @@ -5,8 +5,8 @@
"tag": [
{
"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
"code": "PCI-31",
"display": "Patient clinical information - Suspected inborn error type(s)"
"code": "PCI-6",
"display": "Patient clinical information - Phenotypic details"
}
]
},
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4 changes: 2 additions & 2 deletions Observation/Observation-DiseasePenetrance-Example.json
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Expand Up @@ -5,8 +5,8 @@
"tag": [
{
"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
"code": "PCI-2",
"display": "Patient clinical information - Disease status"
"code": "PCI-15",
"display": "Patient clinical information - Pedigree details / Relevant family history"
}
]
},
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4 changes: 2 additions & 2 deletions Observation/Observation-DiseasePenetrancePheobeSmitham-Example.json
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"tag": [
{
"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
"code": "PCI-2",
"display": "Patient clinical information - Disease status"
"code": "PCI-15",
"display": "Patient clinical information - Pedigree details / Relevant family history"
}
]
},
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4 changes: 2 additions & 2 deletions Observation/Observation-DutchLipidScore-Example.json
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Expand Up @@ -5,8 +5,8 @@
"tag": [
{
"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
"code": "PCI-2",
"display": "Patient clinical information - Disease status"
"code": "MIS-1",
"display": "Further supporting information"
}
]
},
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7 changes: 0 additions & 7 deletions Observation/Observation-GenomicTherapeuticImplication-Example.json
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"profile": [
"http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/therapeutic-implication",
"http://hl7.eu/fhir/laboratory/StructureDefinition/Observation-resultslab-eu-lab"
],
"tag": [
{
"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
"code": "TR-39",
"display": "Test request - Linked test request reference"
}
]
},
"status": "final",
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7 changes: 0 additions & 7 deletions Observation/Observation-GenomicsVariantSLC52A2-Example.json
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"profile": [
"http://hl7.org/fhir/uv/genomics-reporting/StructureDefinition/variant",
"http://hl7.eu/fhir/laboratory/StructureDefinition/Observation-resultslab-eu-lab"
],
"tag": [
{
"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
"code": "TR-28",
"display": "Test Request - Target type"
}
]
},
"status": "final",
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4 changes: 2 additions & 2 deletions Observation/Observation-Haemoglobin-Example.json
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"tag": [
{
"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
"code": "PCI-22",
"display": "Patient clinical information - Fetal haemoglobinopathy paternal screening genotype"
"code": "MIS-1",
"display": "Further supporting information"
}
]
},
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4 changes: 2 additions & 2 deletions Observation/Observation-HistoryOfFetalLoss-Example.json
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"tag": [
{
"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
"code": "PCI-39",
"display": "Patient clinical information - Fetal gestation"
"code": "PCI-36",
"display": "Patient clinical information - Pregnancy status"
}
]
},
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4 changes: 2 additions & 2 deletions Observation/Observation-NeoplasticCell-Example.json
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"tag": [
{
"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
"code": "PS-26",
"display": "Primary Sample - Tumour nuclear content in marked area"
"code": "PCI-15",
"display": "Patient clinical information - Pedigree details / Relevant family history"
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}
]
},
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4 changes: 2 additions & 2 deletions Observation/Observation-NeoplasticCellKayBurbridge-Example.json
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Expand Up @@ -5,8 +5,8 @@
"tag": [
{
"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
"code": "PS-26",
"display": "Primary Sample - Tumour nuclear content in marked area"
"code": "PCI-15",
"display": "Patient clinical information - Pedigree details / Relevant family history"
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}
]
},
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4 changes: 2 additions & 2 deletions Observation/Observation-NoFirstTrimesterFetalAnomalies-Example.json
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Expand Up @@ -5,8 +5,8 @@
"tag": [
{
"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
"code": "PCI-39",
"display": "Patient clinical information - Fetal gestation"
"code": "PCI-36",
"display": "Patient clinical information - Pregnancy status"
}
]
},
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4 changes: 2 additions & 2 deletions Observation/Observation-NoSecondTrimesterFetalAnomalies-Example.json
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"tag": [
{
"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
"code": "PCI-39",
"display": "Patient clinical information - Fetal gestation"
"code": "PCI-7",
"display": "Patient clinical information - Symptoms"
}
]
},
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9 changes: 0 additions & 9 deletions Observation/Observation-Platelets-Example.json
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@@ -1,15 +1,6 @@
{
"resourceType": "Observation",
"id": "Observation-Platelets-Example",
"meta": {
"tag": [
{
"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
"code": "PS-14",
"display": "Primary Sample - Nucleated cell count"
}
]
},
"status": "final",
"code": {
"coding": [
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20 changes: 20 additions & 0 deletions Observation/Observation-PregnancyConfirmation-Example.json
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Expand Up @@ -7,6 +7,26 @@
"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
"code": "PCI-36",
"display": "Patient clinical information - Pregnancy status"
},
{
"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
"code": "PCI-37",
"display": "Patient clinical information - Pregnancy type"
},
{
"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
"code": "PCI-38",
"display": "Patient clinical information - Pregnancy gestation period"
},
{
"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
"code": "PCI-39",
"display": "Patient clinical information - Fetal gestation"
},
{
"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
"code": "PCI-40",
"display": "Patient clinical information - Estimated delivery date (EDD)"
}
]
},
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4 changes: 2 additions & 2 deletions Observation/Observation-QueryXanthoma-Example.json
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Expand Up @@ -5,8 +5,8 @@
"tag": [
{
"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
"code": "PCI-2",
"display": "Patient clinical information - Disease status"
"code": "PCI-7",
"display": "Patient clinical information - Symptoms"
}
]
},
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4 changes: 2 additions & 2 deletions Observation/Observation-TumourTypeDemeizaSeo-Example.json
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"tag": [
{
"system": "https://fhir.nhs.uk/CodeSystem/mds-questiontag-genomics",
"code": "PS-26",
"display": "Primary Sample - Tumour nuclear content in marked area"
"code": "PS-35",
"display": "Primary Sample - Solid tumour type"
}
]
},
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