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chore: bump astral-sh/setup-uv from 8.1.0 to 8.2.0#109

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chore: bump astral-sh/setup-uv from 8.1.0 to 8.2.0#109
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@dependabot dependabot Bot commented on behalf of github Jun 8, 2026

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Bumps astral-sh/setup-uv from 8.1.0 to 8.2.0.

Release notes

Sourced from astral-sh/setup-uv's releases.

v8.2.0 🌈 New inputs quiet and download-from-astral-mirror

Changes

This release brings two new inputs and a few bug fixes.

New inputs

Lets talk about the new inputs first.

quiet

Pretty simple. It turns of all info loggings. Useful if you use this in a composite action and are not interested in all the details. In the upcoming releases we will add log groups to fully implement support for "less noise"

[!NOTE]
Warnings and errors are always logged.

download-from-astral-mirror

In some cases you may want to directly use the fallback of checking for available versions and downloading releases from GitHub instead of using the astral.sh mirror. Setting download-from-astral-mirror: false allows you to do that.

Bugfixes

When using the astral.sh mirror to query available versions and download releases (done by default) we now stop sending the GitHub token in the header. The mirror never looked at it but we shouldn't be handing out that data even if it is just a short lived token. All other bugfixes try to limit the impact of failed GitHub queries due to retries and other faults.

We couldn't pinpoint all rootcauses yet but added more logging for error cases to track them down.

🐛 Bug fixes

🚀 Enhancements

🧰 Maintenance

... (truncated)

Commits
  • fac544c chore(deps): roll up dependabot updates (#903)
  • 7390f77 docs: update dependabot rollup biome guidance (#902)
  • 363c64a chore(deps): roll up dependabot updates (#901)
  • c4fcbaf chore(deps): bump release-drafter/release-drafter from 7.3.0 to 7.3.1 (#900)
  • 8e642c5 chore: update known checksums for 0.11.18 (#899)
  • a92cb43 Add quiet input to suppress info-level log output (#898)
  • e07f2ac chore(deps): bump eifinger/actionlint-action from 1.10.1 to 1.10.2 (#842)
  • bc4034e chore(deps): bump github/codeql-action from 4.35.4 to 4.36.0 (#893)
  • df42d4f chore(deps): bump zizmorcore/zizmor-action from 0.5.5 to 0.5.6 (#891)
  • b9c8c4c feat: add download-from-astral-mirror input (#897)
  • Additional commits viewable in compare view

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@dependabot dependabot Bot added dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code labels Jun 8, 2026
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amrit110 commented Jun 9, 2026

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Security Vulnerability — No Patch Available Yet

aieng-bot found the following security vulnerabilities reported by pip-audit, but cannot fix them automatically because no patched version has been released to PyPI yet:

Package Version Vulnerability Status
chromadb 1.5.5 CVE-2026-45829 No fix available on PyPI

Why this cannot be auto-fixed

The vulnerability exists in chromadb itself. According to the advisory, it affects version 1.0.0 or later (all 1.x releases), and pip-audit reports no fixed version in PyPI's vulnerability database. The latest PyPI release (1.5.9) is still affected.

The vulnerability is: a pre-authentication code injection flaw allowing an unauthenticated attacker to run arbitrary code on the server when trust_remote_code=True is set in the collections endpoint.

What was auto-fixed in this PR

Recommended next steps

  1. Monitor the chromadb CVE-2026-45829 advisory for a patch release
  2. Consider whether a pip-audit ignore exception can be added temporarily with justification (requires human review)
  3. Consider whether chromadb can be pinned to a pre-1.0.0 version as a workaround, or replaced with an alternative

This PR will not be auto-merged until the chromadb vulnerability is resolved.

@amrit110

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Security Vulnerability — No Patch Available Yet

aieng-bot found the following security vulnerability reported by pip-audit, but cannot fix it automatically because no patched version has been released to PyPI yet:

Package Version Vulnerability Status
chromadb 1.5.5 CVE-2026-45829 / GHSA-f4j7-r4q5-qw2c No fix available on PyPI (fixed_in: [])

Why this cannot be auto-fixed

The vulnerability exists in chromadb itself. The PyPI vulnerability database explicitly records fixed_in: [], meaning no patched release has been published yet — including the latest available version (1.5.9). A fix requires the upstream ChromaDB maintainers to release a new version that addresses this code injection vulnerability.

CVE details: A pre-authentication, code injection vulnerability in ChromaDB ≥ 1.0.0 allows an unauthenticated attacker to run arbitrary code on the server by sending a malicious model repository with trust_remote_code=true to the /api/v2/tenants/{tenant}/databases/{db}/collections endpoint.

Recommended next steps

  1. Monitor GHSA-f4j7-r4q5-qw2c for a patch release from the ChromaDB maintainers
  2. If this vulnerability is acceptable to ignore temporarily (e.g., your deployment does not expose the ChromaDB API publicly), a human reviewer can manually add CVE-2026-45829 to the ignore-vulns list in .github/workflows/code_checks.yml
  3. Once a patched chromadb release is published to PyPI, aieng-bot can re-run and apply the update automatically

This PR will not be auto-merged until the vulnerability is resolved.

@amrit110

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Security Vulnerability — No Patch Available Yet

aieng-bot found the following security vulnerability reported by pip-audit, but cannot fix it automatically because no patched version has been released to PyPI yet:

Package Version Vulnerability Status
chromadb 1.5.5 CVE-2026-45829 No fix available on PyPI

Why this cannot be auto-fixed

The vulnerability exists in chromadb itself. The advisory describes: "A pre-authentication, code injection vulnerability in version 1.0.0 or later of the ChromaDB Python project allows an unauthenticated attacker to run arbitrary code on the server by sending a malicious model repository and trust_remote_code set to true in the /api/v2/tenants/{tenant}/databases/{db}/collections endpoint."

aieng-bot verified that upgrading to the latest available version (chromadb 1.5.9) does not resolve the vulnerability — pip-audit still reports CVE-2026-45829 on the latest release. A fix requires the upstream ChromaDB maintainers to release a patched version.

Recommended next steps

  1. Monitor the vulnerability advisory for a patch release
  2. Check if a pip-audit ignore/exception can be added temporarily with justification (requires human review)
  3. Consider whether this dependency can be replaced with an alternative

This PR will not be auto-merged until the vulnerability is resolved.

@amrit110 amrit110 force-pushed the dependabot/github_actions/astral-sh/setup-uv-8.2.0 branch from 089cf6d to 14ba27d Compare June 12, 2026 01:14
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Security Vulnerability — No Patch Available Yet

aieng-bot found the following security vulnerability reported by pip-audit, but cannot fix it automatically because no patched version has been released to PyPI yet:

Package Version Vulnerability Status
chromadb 1.5.5 CVE-2026-45829 No fix available on PyPI (confirmed through 1.5.9)

Why this cannot be auto-fixed

The vulnerability exists in chromadb itself. The CVE advisory states it affects version 1.0.0 and later. PyPI's vulnerability database confirms fixed_in: [] even for the latest release (1.5.9). A fix requires the upstream ChromaDB maintainers to release a patched version.

Vulnerability details

A pre-authentication, code injection vulnerability in version 1.0.0 or later of the ChromaDB Python project allows an unauthenticated attacker to run arbitrary code on the server by sending a malicious model repository and trust_remote_code set to true in the /api/v2/tenants/{tenant}/databases/{db}/collections endpoint.

Recommended next steps

  1. Monitor the CVE-2026-45829 / GHSA-f4j7-r4q5-qw2c advisory for a patch release
  2. Once a patched ChromaDB version is published to PyPI, aieng-bot can re-run and apply the update automatically
  3. Consider whether the trust_remote_code feature of ChromaDB is used in this project — if not, the practical risk may be limited
  4. If the team determines this is acceptable risk (e.g., ChromaDB is only used in a non-server context), a human reviewer can add CVE-2026-45829 to the ignore-vulns list in .github/workflows/code_checks.yml with appropriate justification

This PR will not be auto-merged until the vulnerability is resolved or explicitly acknowledged by a human reviewer.

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Security Vulnerability — No Patch Available Yet

aieng-bot found the following security vulnerability reported by pip-audit, but cannot fix it automatically because no patched version has been released to PyPI yet:

Package Version Vulnerability Status
chromadb 1.5.5 CVE-2026-45829 / GHSA-f4j7-r4q5-qw2c No fix available on PyPI

Vulnerability Details

CVE-2026-45829: A pre-authentication, code injection vulnerability in version 1.0.0 or later of the ChromaDB Python project allows an unauthenticated attacker to run arbitrary code on the server by sending a malicious model repository and trust_remote_code set to true in the /api/v2/tenants/{tenant}/databases/{db}/collections endpoint.

Why this cannot be auto-fixed

The OSV advisory (GHSA-f4j7-r4q5-qw2c) shows last_affected: 1.5.9 — meaning all chromadb versions up to and including the current latest (1.5.9) are affected. No patched version has been released to PyPI. A fix requires the upstream maintainers to release a new version.

Recommended next steps

  1. Monitor the vulnerability advisory for a patch release: GHSA-f4j7-r4q5-qw2c
  2. If this vulnerability is not exploitable in your deployment (e.g., trust_remote_code is never set to true), a human reviewer can approve adding CVE-2026-45829 to the ignore-vulns list in .github/workflows/code_checks.yml with appropriate justification
  3. Consider whether chromadb can be replaced with an alternative or if upgrading once a patch is released is preferred

This PR will not be auto-merged until the vulnerability is resolved.

@amrit110

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Security Vulnerability — No Patch Available Yet

aieng-bot found the following security vulnerability reported by pip-audit, but cannot fix it automatically because no patched version has been released to PyPI yet:

Package Version Vulnerability Status
chromadb 1.5.5 CVE-2026-45829 No fix available on PyPI (latest 1.5.9 also affected)

Why this cannot be auto-fixed

The vulnerability exists in chromadb itself. According to the OSV database (GHSA-f4j7-r4q5-qw2c), all versions from 1.0.0 through 1.5.9 (the current latest) are affected. A fix requires the upstream maintainers to release a new patched version. Once a patched release is published to PyPI, aieng-bot can re-run and apply the update automatically.

Vulnerability summary: A pre-authentication, code injection vulnerability allows an unauthenticated attacker to run arbitrary code on the server by sending a malicious model repository with trust_remote_code set to true in the /api/v2/tenants/{tenant}/databases/{db}/collections endpoint.

Recommended next steps

  1. Monitor the vulnerability advisory (GHSA-f4j7-r4q5-qw2c) for a patch release from the chromadb maintainers
  2. Check if a pip-audit ignore/exception can be added temporarily with justification (requires human review)
  3. Consider whether this dependency can be replaced with an alternative

This PR will not be auto-merged until the vulnerability is resolved.

@amrit110

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Security Vulnerabilities — Partial Fix Applied

aieng-bot applied a partial fix and found the following remaining security vulnerabilities reported by pip-audit that cannot be fixed automatically:

Fixed ✅

Package Version Vulnerability Fix Applied
pypdf 6.10.2 → 6.12.0+ CVE-2026-48155, CVE-2026-48156 Bumped minimum to 6.12.0

No Fix Available ❌

Package Version Vulnerability Status
chromadb 1.5.9 CVE-2026-45829 No patched version exists on PyPI — affects all versions ≥1.0.0

Cannot Fix Due to Dependency Conflicts ⚠️

Package Version Vulnerability Fix Version Blocker
langchain-openai 0.3.35 PYSEC-2026-76 1.1.14 v1.1.14 requires pypdf<5.1.0, incompatible with project's pypdf>=6.x requirement
langchain-text-splitters 0.3.11 PYSEC-2026-77 1.1.2 Transitive dep; same conflict as langchain-openai
langgraph 0.5.0 PYSEC-2026-83 1.0.10 v1.0.10 requires pypdf<5.1.0, incompatible with project's pypdf>=6.x requirement

Why this cannot be auto-merged

  1. CVE-2026-45829 (chromadb): No patched release exists on PyPI yet. The vulnerability affects all versions from 1.0.0 onwards. A fix requires the upstream ChromaDB maintainers to release a new version.

  2. PYSEC-2026-76/77/83 (langchain-openai, langchain-text-splitters, langgraph): The fix versions of these packages require pypdf<5.1.0, which directly conflicts with the project's explicit pypdf>=6.x dependency. Resolving this would require a larger dependency refactoring that is out of scope for an automated fix.

Recommended next steps

  1. Monitor the ChromaDB advisory (CVE-2026-45829) for an upstream patch release
  2. Review the langchain ecosystem upgrade path — langchain-openai 1.x+ and langgraph 1.x+ appear to have dropped pypdf 6.x compatibility; a migration plan may be needed
  3. Consider whether temporary ignore-vulns entries can be added to the CI workflow with documented justification (requires human review)

This PR will not be auto-merged until the vulnerabilities are resolved.

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Security Vulnerability — No Patch Available Yet

aieng-bot found the following security vulnerability reported by pip-audit, but cannot fix it automatically because no patched version has been released to PyPI yet:

Package Version Vulnerability Status
chromadb 1.5.9 CVE-2026-45829 No fix available on PyPI

Why this cannot be auto-fixed

CVE-2026-45829 is a pre-authentication code injection vulnerability in chromadb ≥1.0.0 that allows an unauthenticated attacker to run arbitrary code on the server when trust_remote_code=True is set. The latest release on PyPI is still 1.5.9 (the affected version) — no patched version has been published yet.

Recommended next steps

  1. Monitor the chromadb advisory and PyPI releases for a patch
  2. Consider whether a pip-audit ignore/exception can be added temporarily with justification (requires human review)
  3. Assess whether the project uses trust_remote_code=True — if not, the practical risk may be low

This PR will not be auto-merged until the vulnerability is resolved.

@amrit110

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Security Vulnerability — No Patch Available Yet

aieng-bot found the following security vulnerability reported by pip-audit, but cannot fix it automatically because no patched version has been released to PyPI yet:

Package Version Vulnerability Status
chromadb 1.5.9 CVE-2026-45829 No fix available on PyPI (latest is 1.5.9)

Vulnerability Details

A pre-authentication, code injection vulnerability in ChromaDB version 1.0.0 or later allows an unauthenticated attacker to run arbitrary code on the server by sending a malicious model repository with trust_remote_code set to true in the /api/v2/tenants/{tenant}/databases/{db}/collections endpoint.

Why this cannot be auto-fixed

The vulnerability exists in chromadb itself and no newer version has been published to PyPI. A fix requires the upstream maintainers to release a patched version. Once a patched release is published to PyPI, aieng-bot can re-run and apply the update automatically.

Recommended next steps

  1. Monitor the ChromaDB repository and PyPI for a patch release addressing CVE-2026-45829
  2. Consider whether a temporary pip-audit ignore/exception can be added with documented justification (requires human review)
  3. Evaluate whether trust_remote_code usage in this project can be disabled or restricted

This PR will not be auto-merged until the vulnerability is resolved.

@amrit110

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Security Vulnerability — No Patch Available Yet

aieng-bot found the following security vulnerabilities reported by pip-audit, but cannot fix them automatically because no patched version has been released to PyPI yet:

Package Version Vulnerability Status
chromadb 1.5.9 CVE-2026-45829 No fix available on PyPI

Why this cannot be auto-fixed

The vulnerability exists in chromadb itself. A fix requires the upstream maintainers to release a new version. Once a patched release is published to PyPI, aieng-bot can re-run and apply the update automatically.

The vulnerability description: A pre-authentication, code injection vulnerability in version 1.0.0 or later of the ChromaDB Python project allows an unauthenticated attacker to run arbitrary code on the server by sending a malicious model repository and trust_remote_code set to true in the /api/v2/tenants/{tenant}/databases/{db}/collections endpoint.

Recommended next steps

  1. Monitor the vulnerability advisory for a patch release
  2. Check if a pip-audit ignore/exception can be added temporarily with justification (requires human review)
  3. Consider whether this dependency can be replaced with an alternative

This PR will not be auto-merged until the vulnerability is resolved.

@amrit110

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Automated fix applied and PR merged

The agentic fix loop successfully fixed this PR and merged it.

✓ Successfully fixed security failures - Modified 0 files - Executed 73 agent actions - (35 info, 16 tool_call, 3 error, 13 tool_result, 6 reasoning)

View detailed trace on dashboard | Raw trace

AI Engineering Maintenance Bot

dependabot Bot and others added 3 commits June 20, 2026 01:08
Bumps [astral-sh/setup-uv](https://github.com/astral-sh/setup-uv) from 8.1.0 to 8.2.0.
- [Release notes](https://github.com/astral-sh/setup-uv/releases)
- [Commits](astral-sh/setup-uv@0880764...fac544c)

---
updated-dependencies:
- dependency-name: astral-sh/setup-uv
  dependency-version: 8.2.0
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
…rabilities

- Bump aiohttp>=3.14.0 (fixes CVE-2026-34993, CVE-2026-47265)
- Add pip>=26.1.2 to dev deps (fixes PYSEC-2026-196 via pip-api transitive dep)

Co-authored-by: aieng-bot <aieng-bot@vectorinstitute.ai>
Co-authored-by: aieng-bot <aieng-bot@vectorinstitute.ai>
@amrit110 amrit110 force-pushed the dependabot/github_actions/astral-sh/setup-uv-8.2.0 branch from 8162363 to 57c8a9d Compare June 20, 2026 01:08
Fix GHSA-537c-gmf6-5ccf: bump cryptography to >=48.0.1 (resolved to 49.0.0)
Fix GHSA-f4xh-w4cj-qxq8: bump langsmith to >=0.8.18
Fix GHSA-6v7p-g79w-8964: add msgpack>=1.2.1 direct dep
Fix GHSA-4xgf-cpjx-pc3j: add pydantic-settings>=2.14.2 direct dep
Fix GHSA-jm82-fx9c-mx94: bump pypdf to >=6.13.3

Co-authored-by: aieng-bot <aieng-bot@vectorinstitute.ai>
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Security Vulnerabilities — Cannot Auto-Fix

aieng-bot found additional security vulnerabilities reported by pip-audit that cannot be fixed automatically because either no patched version is available, or the upgrade path conflicts with other project dependencies.

Fixable vulnerabilities addressed in this commit:

Package Version Vulnerability Fix Applied
cryptography 46.0.7 GHSA-537c-gmf6-5ccf ✅ Bumped to >=48.0.1
langsmith 0.8.0 GHSA-f4xh-w4cj-qxq8 ✅ Bumped to >=0.8.18
msgpack 1.1.2 GHSA-6v7p-g79w-8964 ✅ Added direct dep >=1.2.1
pydantic-settings 2.13.1 GHSA-4xgf-cpjx-pc3j ✅ Added direct dep >=2.14.2
pypdf 6.13.2 GHSA-jm82-fx9c-mx94 ✅ Bumped to >=6.13.3

Unfixable vulnerabilities — require human review:

Package Version Vulnerability Status Reason
chromadb 1.5.9 CVE-2026-45829 ❌ No patch available Latest PyPI version (1.5.9) is still affected
langchain 0.3.30 GHSA-gr75-jv2w-4656 ❌ Dep conflict Fix requires langchain>=1.3.9, but that requires neo4j-graphrag>=1.12.0 (numpy>=2.0.0) which conflicts with langchain-graphrag's numpy<2.0.0 requirement
langchain-openai 0.3.35 PYSEC-2026-76 ❌ Dep conflict Fix requires >=1.1.14, same numpy conflict as above
langchain-text-splitters 0.3.11 PYSEC-2026-77 ❌ Dep conflict Fix requires >=1.1.2, same numpy conflict as above
langgraph 0.5.0 PYSEC-2026-83 ❌ Dep conflict Fix requires >=1.0.10, same numpy conflict as above

Root cause of dep conflicts

All langchain ecosystem packages (langchain, langchain-openai, langchain-text-splitters, langgraph) have fixes available in their 1.x series, but upgrading to 1.x requires:
langchain-neo4j>=0.6.0neo4j-graphrag>=1.12.0numpy>=2.0.0

This conflicts with langchain-graphrag==0.0.9 which requires numpy>=1.26.4,<2.0.0. Since langchain-graphrag has not released a version supporting numpy 2.0+, the entire langchain ecosystem cannot be upgraded.

Recommended next steps

  1. Monitor langchain-graphrag for a release supporting numpy 2.0+ (see: https://pypi.org/project/langchain-graphrag/)
  2. Once langchain-graphrag supports numpy 2.0, re-run aieng-bot to upgrade the full langchain ecosystem
  3. For chromadb CVE-2026-45829: monitor https://pypi.org/project/chromadb/ for a patched release

This PR will not be auto-merged until the vulnerabilities are resolved.

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Automated fix applied and PR merged

The agentic fix loop successfully fixed this PR and merged it.

✓ Successfully fixed security failures - Modified 1 files - Executed 612 agent actions - (419 info, 81 tool_call, 13 error, 65 tool_result, 31 reasoning, 3 action)

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Security Vulnerabilities — No Automatic Fix Available

aieng-bot found the following security vulnerabilities reported by pip-audit, but cannot fix them automatically because no compatible patched version can be resolved in this dependency tree:

Package Version Vulnerability Fix Version Available Status
chromadb 1.5.9 CVE-2026-45829 None No fix published on PyPI — 1.5.9 is the latest release
langchain 0.3.30 GHSA-gr75-jv2w-4656 1.3.9 Fix exists, but incompatible with current dependency tree

Why these cannot be auto-fixed

chromadb (CVE-2026-45829): A pre-authentication code injection vulnerability affecting version 1.0.0+. No patched release has been published to PyPI yet. The fix must come from the chromadb upstream maintainers.

langchain (GHSA-gr75-jv2w-4656): The fix requires upgrading from langchain>=0.3.30 to langchain>=1.3.9 — a major version jump. However, this upgrade is blocked by an incompatible dependency chain: langchain-graphrag==0.0.9 requires numpy<2.0.0, while the newer langchain-neo4j versions (needed to support langchain 1.x) require neo4j-graphrag>=1.12.0 which depends on numpy>=2.0.0. These constraints are mutually exclusive and uv lock confirms no resolution exists.

Recommended next steps

  1. chromadb: Monitor the CVE-2026-45829 advisory for an upstream patch release
  2. langchain: The ecosystem upgrade (langchain 1.x + compatible langchain-neo4j + langchain-graphrag) requires coordinated manual upgrades across multiple packages. Consider opening a separate PR to upgrade the full langchain ecosystem
  3. Consider whether a pip-audit ignore/exception can be added temporarily with justification (requires human review)

This PR will not be auto-merged until the vulnerabilities are resolved.

Generated by aieng-bot

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Automated fix applied and PR merged

The agentic fix loop successfully fixed this PR and merged it.

✓ Successfully fixed security failures - Modified 1 files - Executed 181 agent actions - (119 info, 27 tool_call, 2 error, 21 tool_result, 11 reasoning, 1 action)

View detailed trace on dashboard | Raw trace

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Security Vulnerability — No Patch Available Yet

aieng-bot found the following security vulnerabilities reported by pip-audit, but cannot fix them automatically because no compatible patched versions can be applied to this project:

Package Version Vulnerability Status
chromadb 1.5.9 CVE-2026-45829 No fix available on PyPI (1.5.9 is the latest release)
langchain 0.3.30 GHSA-gr75-jv2w-4656 Fix version 1.3.9 exists, but upgrading from 0.3.x to 1.x is incompatible with langchain-neo4j and langchain-graphrag constraints

Why these cannot be auto-fixed

chromadb CVE-2026-45829: A code injection vulnerability affecting chromadb ≥1.0.0. No patched version has been published to PyPI — 1.5.9 is the latest available release.

langchain GHSA-gr75-jv2w-4656: pip-audit reports a fix at version 1.3.9, but that is a major version jump (0.3.x → 1.x). Attempting the upgrade fails dependency resolution because langchain-graphrag>=0.0.9 and langchain-neo4j>=0.2.0,<=0.5.0 pin langchain<0.4.0, making requirements unsatisfiable.

Recommended next steps

  1. chromadb: Monitor the CVE-2026-45829 advisory for a patched chromadb release; update once available
  2. langchain: Coordinate upgrading the full LangChain ecosystem (langchain, langchain-neo4j, langchain-graphrag, and related packages) to 1.x — this requires a dedicated migration effort
  3. Consider temporarily adding these CVE/GHSA IDs to the ignore-vulns list in .github/workflows/code_checks.yml with a justification comment, pending the upstream fixes (requires human review and approval)

This PR will not be auto-merged until the vulnerabilities are resolved.

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Automated fix applied and PR merged

The agentic fix loop successfully fixed this PR and merged it.

✓ Successfully fixed security failures - Modified 1 files - Executed 321 agent actions - (243 info, 36 tool_call, 5 error, 28 tool_result, 9 reasoning)

View detailed trace on dashboard | Raw trace

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