Issues

• ChIPseeker annotation: adding a "multiple" category if a cluster overlaps with multiple features (e.g. exons and introns)

  YuLab-SMU/ChIPseeker#260 · Filter by author santataRU opened on Sep 8, 2025

• ChIPseeker configurations for custom annotations

  YuLab-SMU/ChIPseeker#259 · Filter by author santataRU opened on Sep 7, 2025

• Some problem about Chipseeker 1.44

  YuLab-SMU/ChIPseeker#258 · Filter by author helloworldABCD1234 opened on Aug 11, 2025
  1

• Inconsistent annotation

  YuLab-SMU/ChIPseeker#255 · Filter by author lucolotto opened on May 14, 2025
  1

• how to add title to plotAnnoPie

  YuLab-SMU/ChIPseeker#253 · Filter by author cxtaslim opened on Mar 20, 2025

• Parts of peaks isnt annotated. length of annotated object is short than peakfiles.

  YuLab-SMU/ChIPseeker#251 · Filter by author teryyoung opened on Mar 15, 2025
  1

• How to get same Y axis range for plotAvgProf

  YuLab-SMU/ChIPseeker#249 · Filter by author Krithika-Bhuvan opened on Dec 18, 2024

• how to make a V5 column?

  YuLab-SMU/ChIPseeker#239 · Filter by author sugiYag opened on Sep 6, 2024

• Coloration of plotAvgProf

  YuLab-SMU/ChIPseeker#237 · Filter by author aaron-varg opened on Jul 29, 2024

• ctg开头的染色体号和geneChr不一样

  YuLab-SMU/ChIPseeker#234 · Filter by author Sherry520 opened on Mar 18, 2024

• Would be good to add an error message if the peakfile is not bed file

  YuLab-SMU/ChIPseeker#232 · Filter by author pocession opened on Feb 24, 2024

• Feature request: flexible distance ranges in plotDistToTSS()

  YuLab-SMU/ChIPseeker#231 · Filter by author perinom opened on Jan 24, 2024

• A. thaliana annotation mistakes

  YuLab-SMU/ChIPseeker#230 · Filter by author BHB26 opened on Jan 19, 2024

• annotatePeak using multiple cores?

  YuLab-SMU/ChIPseeker#229 · Filter by author kelly-sovacool opened on Jan 16, 2024

• peakHeatmap split.default error

  YuLab-SMU/ChIPseeker#228 · Filter by author thugib opened on Jan 14, 2024

• invalid DB file

  YuLab-SMU/ChIPseeker#225 · Filter by author hanguojun007 opened on Dec 8, 2023

• When using enrichPeakOverlap, why the p values of different target peaks are same?

  YuLab-SMU/ChIPseeker#224 · Filter by author Dragonlongzhilin opened on Dec 5, 2023
  1

• genomicAnnotationPriority ChIPseeker v1.36.0

  YuLab-SMU/ChIPseeker#223 · Filter by author HAOXUANmogu opened on Oct 23, 2023
  7

• A bug or a problem when using ChIPseeker to do genomic annotation ?

  YuLab-SMU/ChIPseeker#221 · Filter by author Xiangyi-Deng opened on Jun 20, 2023

• How can I get the digital percentages of the gene components of plotAnnoBar?

  YuLab-SMU/ChIPseeker#220 · Filter by author danli349 opened on Apr 25, 2023

• Can it be as highly customizable as "computeMatrix" in deeptools? for example if I want to plot the distribution of genes on the TAD boundary?

  YuLab-SMU/ChIPseeker#217 · Filter by author kuangzhuoran opened on Mar 7, 2023

• covplot

  YuLab-SMU/ChIPseeker#215 · Filter by author ybaeus opened on Jan 11, 2023

• Critical errors in annotating introns and exons - wrong gene

  YuLab-SMU/ChIPseeker#214 · Filter by author tjparnell opened on Dec 28, 2022
  2

• Error in split.default(1:length(windows), as.factor(seqnames(windows))) : group length is 0 but data length > 0 In addition: Warning message: In .merge_two_Seqinfo_objects(x, y) : The 2 combined objects have no sequence levels in common. (Use suppressWarnings() to suppress this warning.)

  YuLab-SMU/ChIPseeker#213 · Filter by author xuyiwennn opened on Dec 28, 2022

• inconsistency with annotatePeak

  YuLab-SMU/ChIPseeker#212 · Filter by author fanying2015 opened on Nov 29, 2022
  2