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Bumping Ubuntu version in workflows #187

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Bumping Ubuntu version in workflows #187

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eb0bab1
bump gcc version to 11
cmaceves Aug 2, 2025
b74db9f
removing not neede autoconf commands
cmaceves Aug 5, 2025
97bc0b7
adding back in a single autoconf -i command instead
cmaceves Aug 5, 2025
90a40f7
testing not configuring the build
cmaceves Aug 5, 2025
c9b134b
adding back in autoreconf and getting config.guess manually
cmaceves Aug 5, 2025
a0fd236
adding more dependencies and not using autoreconf
cmaceves Aug 5, 2025
c7c0c02
going back to configuring
cmaceves Aug 5, 2025
559d68e
bumping htslib version
cmaceves Aug 5, 2025
7273fa3
using official release instead of github to fix submodule issue
cmaceves Aug 5, 2025
d6f2a09
fix untar typo
cmaceves Aug 5, 2025
2b146bb
changing download url back
cmaceves Aug 5, 2025
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24 changes: 11 additions & 13 deletions .github/workflows/ccpp.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -19,40 +19,38 @@ jobs:
- uses: actions/checkout@master
- name: download htslib
run: |
wget https://github.com/samtools/htslib/archive/1.10.2.tar.gz
sudo apt-get install gcc-7
wget https://github.com/samtools/htslib/releases/download/1.12/htslib-1.12.tar.bz2
sudo apt-get install gcc-11
- name: untar
run: tar xf 1.10.2.tar.gz
run: tar xf htslib-1.12.tar.bz2
- name: install htslib
env:
CC: gcc-7
CC: gcc-11
run: |
cd htslib-1.10.2/
autoheader
autoconf
cd htslib-1.12/
autoreconf -i
./configure
make
sudo make install
sudo ldconfig
- name: autotools
env:
CC: gcc-7
CC: gcc-11
run: ./autogen.sh
- name: configure
env:
CC: gcc-7
CC: gcc-11
run: ./configure
- name: make
env:
CC: gcc-7
CC: gcc-11
run: make
- name: make check
env:
CC: gcc-7
CC: gcc-11
run: make check
- name: make install
env:
CC: gcc-7
CC: gcc-11
run: sudo make install

build-macos:
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