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1. arid1a-cd8-tcell-analysis arid1a-cd8-tcell-analysis Public

   Reproducible reanalysis of McDonald, Chick et al. 2023 Immunity (cBAF/ARID1A in CD8+ T cells)

   R

2. bchick.github.io bchick.github.io Public

   Personal Website built using Skeleton CSS

   HTML

3. mcbla-bulkatac-pipe mcbla-bulkatac-pipe Public

   Bulk ATAC-seq Snakemake workflow: FASTQ to peaks and QC, with opt-in differential accessibility, time-course, chromVAR and TOBIAS analyses

   Python

4. mcbla-cutrun-pipe mcbla-cutrun-pipe Public

   Snakemake workflow for paired-end CUT&RUN: FASTQ to QC, peaks, normalized tracks and differential binding

   Python

5. timecourse-patterns timecourse-patterns Public

   Temporal clustering of omics timecourses: dynamic features, named trajectory classes, publication figures

   R

6. mcbla_plasmidsaurus_pipe mcbla_plasmidsaurus_pipe Public

   Plasmidsaurus RNA-seq analysis pipeline

   Shell 1 1