[feat] Support all 4 repeat types - #42

Merged

daxida merged 23 commits into

directed-repeats

Sep 6, 2026

Commits on Sep 5, 2026

Fix edge case bug while trimming IR
daxida
committed
c5c531c

Commits on Sep 6, 2026

Fix kasais invariant and test it
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9f1981a
Move lcp to its own file
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567b547
Add `RepeatType` enum
daxida
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535b9bc
Renames for the future (WIP)
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8796af5
Use RepeatType in SearchParams (no behaviour change)
daxida
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4499cc5
How to name repeats in the reports
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3ea5cbc
How to name columns
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55f36eb
[fmt] Introduce `Arms` to simplify format logic
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5887929
[fmt] Add repeat_type to format
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0b9c03e
[fmt] Fix second arm logic to work with repeated_type
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da40ee6
Support mirror repeats
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5a28c45
[algo] Implement `add_drs`
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397700e
Add repeat arg to the CLI
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9f98641
Add basic tests for python bindings
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ea2ca2f
Add python bindings for find_repeats
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a6b58fc
Add a couple tests for direct repeats
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17a66f1
Update doctests
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8e9dbd1
Document repeat type in algorithm.md
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666b709
Update README
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1cf37aa
Update README
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2b05654
Test other repeat types
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c2d5716
Couple of clarity changes
daxida
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b8db48d