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deeptools / deepTools Public

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feat: lightweight PCA backend (scipy/numpy SVD)#1431

Merged

adRn-s merged 4 commits into

4.0.0deeptools/deepTools:4.0.0from

pca_backdeeptools/deepTools:pca_backCopy head branch name to clipboard

Jul 13, 2026

Conversation Commits4 (4)Checks Files changed

Merged

feat: lightweight PCA backend (scipy/numpy SVD)#1431
adRn-s merged 4 commits into
4.0.0from
pca_back

Commits

Commits on Jul 8, 2026

Compute PCA with scipy instead of scikit-learn

adRn-s
and
claude
committed

Commits on Jul 9, 2026

Fix transpose, log2/rowCenter, and small-ntop bugs in plot_pca; add PCA tests
adRn-s
committed
Merge remote-tracking branch 'origin/4.0.0' into pca_back
adRn-s
committed
Make plotPCA coordinate test portable across BLAS backends
adRn-s
committed

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