Issues

• Refactor: Move plot_venn into a dedicated VennComparisonReport class

  enhancement
  Feature

  draeger-lab/refinegems#209 · Filter by author dyrpsf opened on Sep 3, 2026
  5

  

• [FEATURE] Enhance core_pan module

  await updateenhancement
  Feature

  draeger-lab/refinegems#179 · Filter by author cb-Hades opened on Mar 20, 2025
  1

• More options and enhancements for gap-filling

  await updateenhancement
  Feature

  draeger-lab/refinegems#156 · Filter by author cb-Hades opened on Feb 25, 2025
  1

  

• Implement a consistent logging for refinegems

  enhancement
  Feature

  draeger-lab/refinegems#155 · Filter by author cb-Hades opened on Feb 24, 2025
  1

• Transfer media database to BioDatA-Server

  enhancementicebox
  Feature

  draeger-lab/refinegems#154 · Filter by author GwennyGit opened on Feb 24, 2025

• Growth Curves: Data to gap-filling input

  enhancementicebox
  Feature

  draeger-lab/refinegems#127 · Filter by author cb-Hades opened on Jul 17, 2024
  1

  

• Add new media to the media database

  databaseenhancementicebox
  Feature

  draeger-lab/refinegems#123 · Filter by author cb-Hades opened on Jun 3, 2024
  2

• Issues to resolve before release 2.0

  documentationenhancementrefactoring
  Task

  draeger-lab/refinegems#121 · Filter by author GwennyGit opened on Apr 22, 2024
  

• Enhance implementation of EGC algorithm

  enhancementiceboxrefactoring
  Feature

  draeger-lab/refinegems#114 · Filter by author cb-Hades opened on Feb 23, 2024

• Enhance biomass standardisation

  await updateenhancementrefactoring
  Feature

  draeger-lab/refinegems#112 · Filter by author GwennyGit opened on Jan 19, 2024 · New functions towards future versions

• Enhance growth simulation

  enhancementiceboxrefactoring
  Feature

  draeger-lab/refinegems#79 · Filter by author GwennyGit opened on Apr 19, 2023 · New functions towards future versions

• Enhance the cvterms module

  enhancementrefactoring
  draeger-lab/refinegems#59 · Filter by author GwennyGit opened on Jan 31, 2023 · New functions towards future versions
  1

• Modifiy modules to work with models not using BiGG identifiers

  enhancementicebox
  Feature

  draeger-lab/refinegems#36 · Filter by author famosab opened on Oct 21, 2022 · New functions towards future versions
  8

• Write a jupyter notebook which highlights functions

  documentation
  Feature

  draeger-lab/refinegems#22 · Filter by author famosab opened on Oct 18, 2022 · Good Documentation
  3