Skip to content

initial commit - #23

Open
koohong wants to merge 13 commits into
kalininalab:mainfrom
koohong:main
Open

koohong wants to merge 13 commits into
kalininalab:mainfrom
koohong:main

Conversation

@koohong

@koohong koohong commented Sep 1, 2026

Copy link
Copy Markdown

installed packages using pixi

bill.chung and others added 13 commits September 1, 2026 16:41
Added folder structure section to README with details on the program's organization and components.
Removed the folder structure section from the README.
the data folder contains cabbage, camda_amr_challenge and card.  These files won't be tracked.  .gitignore udpated.
alpar automatix was run after creating the required input file using 100 samples of isolate, phenotype and reference.giff.  It took about 10 hours to run the pipeline.
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants