Issues

• Does STAAR apply to chrX, if all samples are female?

  li-lab-genetics/STAARpipeline-Tutorial#90 · Filter by author 54sym opened on Oct 1, 2026
  5

• Error in fit null model()

  li-lab-genetics/STAARpipeline-Tutorial#89 · Filter by author joanzz opened on Aug 6, 2026
  2

• Silent Failure of Annotation Weights for When variant_type != "SNV"

  li-lab-genetics/STAARpipeline-Tutorial#88 · Filter by author kwdoyle opened on Mar 12, 2026
  1

• Question about SNP-based p-values: STAARpipeline VS REGENIE

  li-lab-genetics/STAARpipeline-Tutorial#87 · Filter by author Jun-Jun-Xu opened on Feb 23, 2026
  3

• fit_nullmodel() fails with “Not a matrix” when sparse GRM is supplied

  li-lab-genetics/STAARpipeline-Tutorial#85 · Filter by author komais opened on Aug 27, 2025
  5

• Error in Individual Score Test cond

  li-lab-genetics/STAARpipeline-Tutorial#81 · Filter by author 1874309276 opened on Jun 26, 2025
  1

• Query Regarding Platform-Specific Bias in PCA Analysis for WGS Data

  li-lab-genetics/STAARpipeline-Tutorial#78 · Filter by author xuanxuClem opened on Feb 21, 2025

• Error : Mat::operator(): index out of bounds & Error in apply(emthr_SCANG_O, 2, max) :

  li-lab-genetics/STAARpipeline-Tutorial#67 · Filter by author jingydz opened on Aug 23, 2024
  1

• Conditional analysis - Summary Gene Centric Noncoding not running to completion

  li-lab-genetics/STAARpipeline-Tutorial#58 · Filter by author samreenzafer opened on Apr 25, 2024
  6

• [Suggestion-Implementation] Add information to summary and annotations of results

  li-lab-genetics/STAARpipeline-Tutorial#57 · Filter by author GACGAMA opened on Apr 23, 2024
  1

• #SNVs per case/control?

  li-lab-genetics/STAARpipeline-Tutorial#48 · Filter by author kwdoyle opened on Mar 8, 2024
  1

• gnomAD AF & family-based vcf analysis

  li-lab-genetics/STAARpipeline-Tutorial#34 · Filter by author XiaKwan opened on Oct 13, 2023
  3