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@mahmoodlab

Mahmood Lab @ Harvard/MGB

AI for Pathology Image Analysis Lab @ HMS / BWH

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  1. CLAM CLAM Public

    Open source tools for computational pathology - Nature BME

    Python 1.8k 523

  2. TRIDENT TRIDENT Public

    Toolkit for large-scale whole-slide image processing.

    Python 646 146

  3. TITAN TITAN Public

    Multimodal Whole Slide Foundation Model for Pathology - Nature Medicine

    Python 374 42

  4. UNI UNI Public

    Pathology Foundation Model - Nature Medicine

    Jupyter Notebook 793 95

  5. CONCH CONCH Public

    Vision-Language Pathology Foundation Model - Nature Medicine

    Python 537 54

  6. CORAL CORAL Public

    Spatial biology processing suite

    Jupyter Notebook 83 13

Repositories

Showing 10 of 40 repositories
  • LIMIT Public

    Vision-Language Fine-tuning with Pathology Reports | Conch-Z [Neurips 2026 Spotlight]

    mahmoodlab/LIMIT's past year of commit activity
    20 0 0 0 Updated Oct 14, 2026
  • TRIDENT Public

    Toolkit for large-scale whole-slide image processing.

    mahmoodlab/TRIDENT's past year of commit activity
    Python 646 146 22 (1 issue needs help) 23 Updated Oct 12, 2026
  • viper Public
    mahmoodlab/viper's past year of commit activity
    Python 10 0 0 0 Updated Sep 3, 2026
  • 3DCPath-datasets Public

    Compilation of publicly available datasets in 3D Computational Pathology

    mahmoodlab/3DCPath-datasets's past year of commit activity
    52 0 0 0 Updated Sep 2, 2026
  • CORAL Public

    Spatial biology processing suite

    mahmoodlab/CORAL's past year of commit activity
    Jupyter Notebook 83 13 3 0 Updated Aug 28, 2026
  • KRONOS Public

    Foundation Model for Multiplex Spatial Proteomic Images

    mahmoodlab/KRONOS's past year of commit activity
    Jupyter Notebook 213 39 3 2 Updated Jul 27, 2026
  • MAMMOTH Public

    A parameter-efficient mixture-of-experts module for computational pathology - ICLR

    mahmoodlab/MAMMOTH's past year of commit activity
    Python 107 13 1 0 Updated May 17, 2026
  • HEST Public

    Integrating histology and spatial transcriptomics - NeurIPS 2024

    mahmoodlab/HEST's past year of commit activity
    Jupyter Notebook 445 55 23 3 Updated Apr 16, 2026
  • SEAL Public

    Spatial Expression-Aligned Learning to improve pathology foundation models

    mahmoodlab/SEAL's past year of commit activity
    50 3 3 1 Updated Feb 17, 2026
  • MIL-Lab Public

    Feather - Lightweight supervised slide foundation models (ICML 2025)

    mahmoodlab/MIL-Lab's past year of commit activity
    Python 158 25 1 0 Updated Feb 5, 2026
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People

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