Simplified target/bait inputs - #970
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gongyixiao
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Apr 18, 2024
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I agree this is indeed simplifying the process. But I guess there might be some additional conflicts resolving involved regarding placeHolder values and storeDir.
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Previously we have required several tempo files to be generated for each baitset. The processes for generating files such as the coding bed, the intervals list, etc, were not well-documented or formalized, which presents a problem for ease of use and standardization. This PR aims to simplify that process by only requiring the
targets.bedandbaits.bedand creating the other necessary files within Tempo with a new process.