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New Module: Octopusv/correct#11540

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manascripts wants to merge 3 commits intonf-core:masterfrom
manascripts:octopusv-correct
Open

New Module: Octopusv/correct#11540
manascripts wants to merge 3 commits intonf-core:masterfrom
manascripts:octopusv-correct

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@manascripts manascripts commented May 6, 2026

Description

Add octopusv/correct nf-core module to standardize SV VCFs into OctopuSV SVCF format.

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Broadcast software version numbers to topic: versions - See version_topics
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity

assertAll(
{ assert process.success },
{ assert snapshot(
file(process.out.svcf.get(0).get(1)).name,
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maybe something like https://github.com/seppinho/nft-vcf#summary could give a better snapshot here?

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2 participants