Add DIAMOND blastp subworkflow for protein homology search against NCBI RefSeq#50

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tracelail wants to merge 55 commits intonf-core:devfrom

tracelail:unfinished-diamond-blastp

Commits on Mar 26, 2025

Commits on May 21, 2025

reinstalled diamond/blastp module. Installed blast/makeblastdb
tracelail
committed

Commits on Jun 2, 2025

wrote draft integration of BLAST_MAKEBLASTDB and NCBIREFSEQDOWNLOAD into functional_annotation subworkflow.
tracelail
committed

Commits on Jun 10, 2025

removed blast/makeblastdb nf-core module and create local diamondpreparetaxa local module template.
tracelail
committed

Commits on Jun 17, 2025

finished up writing the ncbirefseqdownload process for the first draft and wrote an initial main.nf.test for the process
tracelail
committed

Commits on Jun 18, 2025

edited ncbirefseqdownload script to a working stated where the nf-test process is successful.
tracelail
committed

Commits on Jun 26, 2025

created a working ncbirefseqdownload module with basic nf-test. Also utilized tests/nextflow.config to fix memory error.
tracelail
committed

Commits on Jun 27, 2025

added more working tests to ncbirefseqdownload and organized.
tracelail
committed

Commits on Jun 30, 2025

Added diamondpreparetaxa main.nf script and a process.success nf-test.
tracelail
committed

Commits on Jul 1, 2025

Merge branch 'dev' into unfinished-diamond-blastp
tracelail
authored

Commits on Jul 2, 2025

added working snapshot assertions for process.out match and versions to diamondpreparetaxa module
tracelail
committed

Commits on Jul 7, 2025

Added output documentation for all seven Diamond subworkflow outputs.
tracelail
committed

Commits on Jul 28, 2025

Apply suggestions from code review

tracelail
and
olgabot
authored

Commits on Jul 29, 2025

Commits on Jul 30, 2025

Commits on Jul 31, 2025

Commits on Aug 6, 2025

working subworkflow nf-test with large prot.accession2taxid.gz taxonmap.
tracelail
committed

Commits on Aug 7, 2025

Updated diamond subworkflow main.nf.test with a smaller taxonmap for testing
tracelail
committed

Commits on Aug 21, 2025

created a local diamond subworkflow that produces a diamond/blastp output
tracelail
committed

Commits on Oct 2, 2025

Commits on Oct 3, 2025

Commits on Mar 30, 2026

Commits on Mar 31, 2026

updated missed merge conflict
tracelail
committed

Commits on Apr 3, 2026

Commits on Apr 6, 2026