Apply Nextflow 25 strict syntax fixes#1677

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pinin4fjords merged 7 commits into

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strict-syntax-fixes

Jan 21, 2026

Commits on Jan 21, 2026

refactor: Apply Nextflow 25 strict syntax to local files

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chore: Update nf-core modules and subworkflows for strict syntax

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fix: Resolve BBMAP version reference and Sentieon test configuration

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test: Update test snapshots for strict syntax compliance

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ci: Add Nextflow strict syntax lint workflow

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docs: Update CHANGELOG for strict syntax fixes

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docs: Fix RSEM output documentation formatting and accuracy

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