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Automatic compilation and i18n update #589

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17 changes: 6 additions & 11 deletions docs/source/_data/python_lib.txt
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Original file line number Diff line number Diff line change
@@ -1,26 +1,22 @@
# version 2022-11-24
######## geospatial data analysis ########
scikit-image
packaging==24.0 # scikit-image tries to override the system package. Pinning to prevent
scipy
shapely
shapely-geojson
tqdm
GDAL==$GDAL_VERSION
GDAL[numpy]==$GDAL_VERSION
bqplot
numpy
geopandas
matplotlib
pandas
dask[complete]
planet
tensorflow-probability
geeadd

######## Google Earthengine ########
oauth2client
google-api-python-client==1.12.8
git+https://github.com/openforis/earthengine-api.git@v0.1.384#egg=earthengine-api&subdirectory=python
oeel
pyotb
uv

######## BFAST dependencies ########
wget
Expand All @@ -44,7 +40,6 @@ pre-commit
######## web api ########
falcon
gunicorn
pyCrypto
awscli==1.11.18 # Pinned to prevent backtracking

######## other deps ########
Expand All @@ -60,8 +55,8 @@ geeadd
geeup
cogee
xee
torch
torchvision
pystac-client
contextily

######## OSK requirements ########
descartes
Expand Down
26 changes: 12 additions & 14 deletions docs/source/_data/r_packages.sh
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Expand Up @@ -9,6 +9,9 @@ echo "*****************************"
export JAVA_HOME=/usr/local/lib/sdkman/candidates/java/current
export JAVA_CPPFLAGS="-I${JAVA_HOME}/include -I${JAVA_HOME}/include/linux"
export JAVA_LD_LIBRARY_PATH=${JAVA_HOME}/lib/server:${JAVA_HOME}/lib
export R_DEFAULT_INTERNET_TIMEOUT=7200

R -e "install.packages('remotes', dependencies=TRUE, repos='http://localhost:8180/')"

R CMD javareconf

Expand Down Expand Up @@ -260,6 +263,7 @@ R -e "install.packages(c(\
'tint',\
'tinytex',\
'tools',\
'torch',\
'treemap',\
'tufte',\
'units',\
Expand Down Expand Up @@ -290,19 +294,13 @@ R -e "install.packages(c(\
'yaml',\
'zeallot',\
'zoo'
), repos='http://r-proxy:8180/')"

# Install archived packages - this doesn't work through r-proxy
R -e "install.packages('https://cran.r-project.org/src/contrib/Archive/rgdal/rgdal_1.6-7.tar.gz')"
R -e "install.packages('https://cran.r-project.org/src/contrib/Archive/rgeos/rgeos_0.6-4.tar.gz')"

R -e "install.packages('remotes', dependencies=TRUE, repos='http://r-proxy:8180/')"
), repos='http://localhost:8180/')"

R -e "remotes::install_url(c(\
'http://r-proxy:8180/github/r-barnes/dggridR/archive/refs/heads/master.tar.gz',\
'http://r-proxy:8180/github/bfast2/bfast/archive/refs/heads/master.tar.gz',\
'http://r-proxy:8180/github/azvoleff/gfcanalysis/archive/refs/heads/master.tar.gz',\
'http://r-proxy:8180/github/loicdtx/bfastSpatial/archive/refs/heads/master.tar.gz',\
'http://r-proxy:8180/github/jreiche/bayts/archive/refs/heads/master.tar.gz',\
'http://r-proxy:8180/github/cran/gdalUtils/archive/refs/heads/master.tar.gz'\
), repos='http://r-proxy:8180/', build = FALSE)"
'http://localhost:8180/github/r-barnes/dggridR/archive/refs/heads/master.tar.gz',\
'http://localhost:8180/github/bfast2/bfast/archive/refs/heads/master.tar.gz',\
'http://localhost:8180/github/azvoleff/gfcanalysis/archive/refs/heads/master.tar.gz',\
'http://localhost:8180/github/jreiche/bayts/archive/refs/heads/master.tar.gz'\
), repos='http://localhost:8180/', build = FALSE)"

R -e "torch::install_torch(cuda_version = '12.8')"
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