BiocPy repositories

41 repositories

hdf5array
Public
HDF5 File-backed arrays for Python
hdf5 delayedarray
hdf5 delayedarray
Python
•
MIT License
•0•1•0•1•Updated Sep 21, 2026Sep 21, 2026
summarizedexperiment
Public
Container class for genomic experiments
summarizedexperiment genomics-data
summarizedexperiment genomics-data
Python
•
MIT License
•2•7•3•1•Updated Sep 21, 2026Sep 21, 2026
tiledbarray
Public
TileDB backed delayed arrays for Python
tiledb delayedarray
tiledb delayedarray
Python
•
MIT License
•0•1•1•1•Updated Sep 21, 2026Sep 21, 2026
spatialexperiment
Public
Container for Spatial Experiments
spatial-transcriptomics
spatial-transcriptomics
Python
•
MIT License
•0•3•14•2•Updated Sep 21, 2026Sep 21, 2026
spatialfeatureexperiment
Public
spatial-transcriptomics
spatial-transcriptomics
Python
•
MIT License
•0•1•2•1•Updated Sep 21, 2026Sep 21, 2026
singlecellexperiment
Public
Container class for single-cell experiments
single-cell singlecellexperiment
single-cell singlecellexperiment
Python
•
MIT License
•2•9•0•1•Updated Sep 21, 2026Sep 21, 2026
scrnaseq
Public
Collection of public single-cell RNA-seq datasets
single-cell-rna-seq
single-cell-rna-seq
Python
•
MIT License
•1•3•0•1•Updated Sep 21, 2026Sep 21, 2026
rds2py
Public
Read and Write RDS files, in Python
python r
python r
Python
•
MIT License
•5•30•1•2•Updated Sep 21, 2026Sep 21, 2026
pybiocfilecache
Public
Python implementation of the BiocFileCache R package
cache
cache
Python
•
MIT License
•2•2•0•1•Updated Sep 21, 2026Sep 21, 2026
orgdb
Public
Access OrgDb Annotation objects
genome-annotation genomicranges orgdb
genome-annotation genomicranges orgdb
Python
•
MIT License
•0•1•0•1•Updated Sep 21, 2026Sep 21, 2026
multiassayexperiment
Public
Container class to represent and manage multi-omics genomic experiments
multiassayexperiment
multiassayexperiment
Python
•
MIT License
•1•6•0•1•Updated Sep 21, 2026Sep 21, 2026
mopsy
Public
Matrix operations
numpy matrix scipy
numpy matrix scipy
Python
•
MIT License
•1•0•1•1•Updated Sep 21, 2026Sep 21, 2026
iranges
Public
IRanges in Python
interval-arithmetic iranges
interval-arithmetic iranges
Python
•
MIT License
•1•3•0•1•Updated Sep 21, 2026Sep 21, 2026
expressionatlas
Public
Access datasets from EMBL-EBI Expression Atlas
embl-ebi expression-data
embl-ebi expression-data
Python
•
MIT License
•0•1•0•1•Updated Sep 21, 2026Sep 21, 2026
experimenthub
Public
Access ExperimentHub resources
experimenthub
experimenthub
Python
•
MIT License
•0•0•0•1•Updated Sep 21, 2026Sep 21, 2026
ensembldb
Public
Access EnsemblDb from AnnotationHub
ensembl annotationhub
ensembl annotationhub
Python
•
MIT License
•0•1•0•1•Updated Sep 21, 2026Sep 21, 2026
compressed-lists
Public
Memory-efficient container for list-like objects
memory-management
memory-management
Python
•
MIT License
•0•0•0•1•Updated Sep 21, 2026Sep 21, 2026
biostrings
Public
string-manipulation genomic-sequences
string-manipulation genomic-sequences
Python
•
MIT License
•0•2•0•1•Updated Sep 21, 2026Sep 21, 2026
txdb
Public
Access TxDB Annotation objects
genome-annotation genomicranges txdb
genome-annotation genomicranges txdb
Python
•
MIT License
•0•1•0•4•Updated Sep 21, 2026Sep 21, 2026
biorat
Public
miscellaneous
miscellaneous
Python
•
MIT License
•0•1•0•1•Updated Sep 21, 2026Sep 21, 2026
biocutils
Public
Miscellaneous utilities for BiocPy, mostly to mimic base functionality in R.
utilities r-python
utilities r-python
Python
•
MIT License
•0•2•3•2•Updated Sep 21, 2026Sep 21, 2026
biocborn
Public
bioc objects + seaborn
Python
•
MIT License
•0•2•0•1•Updated Sep 21, 2026Sep 21, 2026
genomicranges
Public
Container class to represent genomic locations and support genomic analysis
genomicranges
genomicranges
Python
•
MIT License
•6•27•1•1•Updated Sep 21, 2026Sep 21, 2026
biocsetup
Public
Quickly setup new Python packages
python scaffold-template hatch
python scaffold-template hatch uv
Python
•
MIT License
•0•3•1•2•Updated Sep 21, 2026Sep 21, 2026
biocframe
Public
Bioconductor-like data frames
dataframe
dataframe
Python
•
MIT License
•3•5•0•1•Updated Sep 21, 2026Sep 21, 2026
hatchit
Public
Scaffold new python packages
python scaffold hatch
python scaffold hatch uv
Jinja
•
MIT License
•0•0•0•7•Updated Sep 1, 2026Sep 1, 2026
biocpy.github.io
Public
CSS
•0•0•0•0•Updated Aug 26, 2026Aug 26, 2026
packages
Public
Discover and explore the BiocPy ecosystem
registry index biocpy
registry index biocpy
JavaScript
•0•0•0•0•Updated Aug 21, 2026Aug 21, 2026
.github
Public
0•0•0•0•Updated Aug 15, 2026Aug 15, 2026
DelayedArray
Public
DelayedArrays, in Python
delayedarray
delayedarray
Python
•
MIT License
•0•2•2•0•Updated Dec 13, 2025Dec 13, 2025

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BiocPy

All

41 repositories

hdf5array

summarizedexperiment

tiledbarray

spatialexperiment

spatialfeatureexperiment

singlecellexperiment

scrnaseq

rds2py

pybiocfilecache

orgdb

multiassayexperiment

mopsy

iranges

expressionatlas

experimenthub

ensembldb

compressed-lists

biostrings

txdb

biorat

biocutils

biocborn

genomicranges

biocsetup

biocframe

hatchit

biocpy.github.io

packages

.github

DelayedArray

Repositories list

41 repositories