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    16 repositories

    • CircScoring

      Public
      Python
      •0•0•0•0•Updated Oct 12, 2026Oct 12, 2026

    • NCLscan

      Public
      We have developed a new pipeline, NCLscan, which is rather advantageous in the identification of both intragenic and intergenic "non-co-linear" (NCL) transcript…
      C++
      •
      MIT License
      •9•6•8•1•Updated Jul 16, 2026Jul 16, 2026

    • eLncRNA_mediation

      Public
      eLncRNA-mediated regulatory axes
      Python
      •0•0•0•0•Updated May 5, 2026May 5, 2026

    • CircMiMi

      Public
      A package for constructing CLIP-seq data-supported circRNA-miRNA-mRNA interactions
      Python
      •
      MIT License
      •1•7•5•0•Updated Oct 12, 2023Oct 12, 2023

    • NCLscan-hybrid

      Public
      Shell
      •1•1•0•0•Updated Jun 17, 2023Jun 17, 2023

    • circRNA_features

      Public
      Python
      •0•0•0•0•Updated Apr 12, 2023Apr 12, 2023

    • checkSuppReads

      Public
      Python
      •1•0•0•0•Updated Apr 12, 2023Apr 12, 2023

    • NCLcomparator

      Public
      a comprehensive tool for analyzing non-co-linear (NCL) transcripts (fusion, trans-splicing, and circular RNA)
      Roff
      •
      MIT License
      •4•0•0•0•Updated Nov 21, 2022Nov 21, 2022

    • ncl-exon-number-extractor

      Public
      Python
      •0•0•0•0•Updated Jul 13, 2022Jul 13, 2022

    • circQTL_ASD

      Public
      R
      •0•0•0•0•Updated Oct 7, 2021Oct 7, 2021

    • circRNA_ASD

      Public
      Geneme-wide, integrative analysis of circular RNA dysregulation and the corresponding circular RNA-microRNA-mRNA regulatory axes in autism
      autismcircrnamrna
      autismcircrnamrnamicrorna
      R
      •1•2•1•0•Updated Apr 12, 2021Apr 12, 2021

    • NCLtk

      Public
      a toolkit to diagnose ambiguous alignment in circRNA events
      Shell
      •0•0•0•0•Updated Feb 5, 2020Feb 5, 2020

    • ICARES

      Public
      Shell
      •
      MIT License
      •1•0•0•0•Updated Oct 14, 2019Oct 14, 2019

    • ASEproc

      Public
      ASEproc can help user to find allele specific expression site from RNA-seq data. We also built a graph procedure to help user draw the scatter plot.
      Shell
      •1•0•0•0•Updated Mar 30, 2017Mar 30, 2017

    • circRNAFinder

      Public
      a tool for identifying circular RNAs using RNA-Seq data
      Python
      •
      GNU General Public License v3.0
      •11•1•0•0•Updated Oct 23, 2013Oct 23, 2013

    • TSscan

      Public
      The TSscan Pipeline
      C++
      •1•0•0•0•Updated Aug 20, 2013Aug 20, 2013
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