Repositories list

• sibernetic

  Public

  openworm/sibernetic’s past year of commit activity
  This is a C++/OpenCL implementation of the PCISPH algorithm supplemented with a set of biomechanics related features applied to C. elegans locomotion

  C

  •

  Other

  •115115 forks in openworm/sibernetic•391391 stars in openworm/sibernetic•3333 issues in openworm/sibernetic•1111 pull requests in openworm/sibernetic•Updated Oct 22, 2026Oct 22, 2026

• muscle_model

  Public
  Model of C elegans body wall muscle based on Boyle & Cohen 2008

  Jupyter Notebook

  •

  Other

  •2222 forks in openworm/muscle_model•4747 stars in openworm/muscle_model•1414 issues in openworm/muscle_model•00 pull requests in openworm/muscle_model•Updated Oct 21, 2026Oct 21, 2026

• CE_locomotion

  Public
  Neuromechanical model of locomotion in C. elegans, originally developed by Eduardo Izquerdo, Erick Olivares and Randall Beer

  C++

  •66 forks in openworm/CE_locomotion•44 stars in openworm/CE_locomotion•77 issues in openworm/CE_locomotion•33 pull requests in openworm/CE_locomotion•Updated Oct 18, 2026Oct 18, 2026

• Worm2Dtest

  Public
  Simulator of 2D worm body models

  C++

  •

  MIT License

  •00 forks in openworm/Worm2Dtest•11 star in openworm/Worm2Dtest•00 issues in openworm/Worm2Dtest•00 pull requests in openworm/Worm2Dtest•Updated Oct 14, 2026Oct 14, 2026

• c302

  Public
  The c302 framework for generating multiscale network models of C. elegans

  simulationopenworm

  simulationopenworm

  Python

  •

  MIT License

  •3838 forks in openworm/c302•159159 stars in openworm/c302•88 issues in openworm/c302•00 pull requests in openworm/c302•Updated Oct 13, 2026Oct 13, 2026

• OpenWorm

  Public
  Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues

  simulationbiologyopenworm+ 1

  simulationbiologyopenwormelegans

  Python

  •

  MIT License

  •249249 forks in openworm/OpenWorm•3.1k3.1k stars in openworm/OpenWorm•4141 issues in openworm/OpenWorm•11 pull request in openworm/OpenWorm•Updated Oct 13, 2026Oct 13, 2026

• Worm3DViewer

  Public
  Test repository for multiple views of the worm in 3D

  Python

  •00 forks in openworm/Worm3DViewer•11 star in openworm/Worm3DViewer•00 issues in openworm/Worm3DViewer•00 pull requests in openworm/Worm3DViewer•Updated Oct 12, 2026Oct 12, 2026

• JohnsonMailler_MuscleModel

  Public
  C. elegans muscle model from Johnson & Mailler 2015

  HTML

  •11 fork in openworm/JohnsonMailler_MuscleModel•22 stars in openworm/JohnsonMailler_MuscleModel•33 issues in openworm/JohnsonMailler_MuscleModel•00 pull requests in openworm/JohnsonMailler_MuscleModel•Updated Oct 8, 2026Oct 8, 2026

• NeuroPAL

  Public
  Scripts to analyse and convert NeuroPAL datasets

  neurosciencecelegansopenworm+ 2

  neurosciencecelegansopenworm3dneuroml

  Jupyter Notebook

  •00 forks in openworm/NeuroPAL•55 stars in openworm/NeuroPAL•00 issues in openworm/NeuroPAL•00 pull requests in openworm/NeuroPAL•Updated Oct 8, 2026Oct 8, 2026

• hodgkin_huxley_tutorial

  Public
  A repository containing code for a number of tutorials on the Hodgkin Huxley model, including an interactive Jupyter notebook

  Python

  •

  GNU Lesser General Public License v3.0

  •1010 forks in openworm/hodgkin_huxley_tutorial•5252 stars in openworm/hodgkin_huxley_tutorial•66 issues in openworm/hodgkin_huxley_tutorial•00 pull requests in openworm/hodgkin_huxley_tutorial•Updated Oct 5, 2026Oct 5, 2026

• WCONViewer

  Public
  Python based viewer for WCON files in 2D

  Python

  •

  MIT License

  •00 forks in openworm/WCONViewer•00 stars in openworm/WCONViewer•00 issues in openworm/WCONViewer•00 pull requests in openworm/WCONViewer•Updated Oct 5, 2026Oct 5, 2026

• ConnectomeToolbox

  Public
  Information on published connectomics data related to C. elegans

  Python

  •

  MIT License

  •77 forks in openworm/ConnectomeToolbox•88 stars in openworm/ConnectomeToolbox•44 issues in openworm/ConnectomeToolbox•00 pull requests in openworm/ConnectomeToolbox•Updated Sep 29, 2026Sep 29, 2026

• geppetto-client

  Public
  The web client of a Geppetto application

  JavaScript

  •

  Other

  •33 forks in openworm/geppetto-client•66 stars in openworm/geppetto-client•7070 issues in openworm/geppetto-client•2727 pull requests in openworm/geppetto-client•Updated Sep 19, 2026Sep 19, 2026

• org.geppetto.simulation

  Public
  Generic simulation bundle for Geppetto

  Java

  •

  Other

  •1111 forks in openworm/org.geppetto.simulation•99 stars in openworm/org.geppetto.simulation•22 issues in openworm/org.geppetto.simulation•44 pull requests in openworm/org.geppetto.simulation•Updated Sep 16, 2026Sep 16, 2026

• org.geppetto.frontend

  Public
  Geppetto Java frontend bundle

  Java

  •

  Other

  •2424 forks in openworm/org.geppetto.frontend•3030 stars in openworm/org.geppetto.frontend•22 issues in openworm/org.geppetto.frontend•44 pull requests in openworm/org.geppetto.frontend•Updated Sep 15, 2026Sep 15, 2026

• WormWorx

  Public
  C. elegans simulator

  C

  •33 forks in openworm/WormWorx•77 stars in openworm/WormWorx•11 issue in openworm/WormWorx•00 pull requests in openworm/WormWorx•Updated Sep 6, 2026Sep 6, 2026

• org.geppetto.datasources

  Public
  Java

  •

  Other

  •33 forks in openworm/org.geppetto.datasources•22 stars in openworm/org.geppetto.datasources•00 issues in openworm/org.geppetto.datasources•55 pull requests in openworm/org.geppetto.datasources•Updated Aug 28, 2026Aug 28, 2026

• openworm.ai

  Public
  Scripts related to use of LLMs and other AI technology in OpenWorm

  HTML

  •

  MIT License

  •33 forks in openworm/openworm.ai•44 stars in openworm/openworm.ai•22 issues in openworm/openworm.ai•00 pull requests in openworm/openworm.ai•Updated Aug 28, 2026Aug 28, 2026

• org.geppetto.core

  Public
  Geppetto core bundle

  Java

  •

  Other

  •1111 forks in openworm/org.geppetto.core•2222 stars in openworm/org.geppetto.core•66 issues in openworm/org.geppetto.core•77 pull requests in openworm/org.geppetto.core•Updated Aug 25, 2026Aug 25, 2026

• MultipleNetworkOscillator

  Public
  Code and data for manuscript submitted to eLife. The model provides a theoretical demonstration that multiple network oscillators in the ventral nerve cord are …

  C++

  •11 fork in openworm/MultipleNetworkOscillator•00 stars in openworm/MultipleNetworkOscillator•00 issues in openworm/MultipleNetworkOscillator•00 pull requests in openworm/MultipleNetworkOscillator•Updated Aug 4, 2026Aug 4, 2026

• openworm.github.io

  Public
  OpenWorm main website

  HTML

  •3434 forks in openworm/openworm.github.io•3030 stars in openworm/openworm.github.io•1515 issues in openworm/openworm.github.io•11 pull request in openworm/openworm.github.io•Updated Jul 31, 2026Jul 31, 2026

• openworm_docs

  Public
  Documentation for OpenWorm, i.e. docs.openworm.org

  Python

  •2626 forks in openworm/openworm_docs•4646 stars in openworm/openworm_docs•1313 issues in openworm/openworm_docs•55 pull requests in openworm/openworm_docs•Updated Jul 31, 2026Jul 31, 2026

• CelegansProteinExtractionPipeline

  Public
  This is a repository dedicated to my OW studentship project

  Jupyter Notebook

  •22 forks in openworm/CelegansProteinExtractionPipeline•00 stars in openworm/CelegansProteinExtractionPipeline•00 issues in openworm/CelegansProteinExtractionPipeline•00 pull requests in openworm/CelegansProteinExtractionPipeline•Updated Jul 29, 2026Jul 29, 2026

• NicolettiEtAl2024_MN_IN

  Public
  C.elegans motor and interneurons (Nicoletti at al. 2024)

  Python

  •44 forks in openworm/NicolettiEtAl2024_MN_IN•00 stars in openworm/NicolettiEtAl2024_MN_IN•44 issues in openworm/NicolettiEtAl2024_MN_IN•33 pull requests in openworm/NicolettiEtAl2024_MN_IN•Updated Jul 2, 2026Jul 2, 2026

• wormneuroatlas

  Public
  Neural signal propagation atlas (Randi et al.), genome (WormBase), single-cell transcriptome (Taylor et al.), neuropeptide/GPCR deorphanization (Beets et al.), …

  Python

  •

  GNU General Public License v3.0

  •88 forks in openworm/wormneuroatlas•22 stars in openworm/wormneuroatlas•00 issues in openworm/wormneuroatlas•00 pull requests in openworm/wormneuroatlas•Updated Jun 22, 2026Jun 22, 2026

• tracker-commons

  Public
  Compilation of information and code bases related to open-source trackers for C. elegans

  Scala

  •1313 forks in openworm/tracker-commons•1515 stars in openworm/tracker-commons•2828 issues in openworm/tracker-commons•33 pull requests in openworm/tracker-commons•Updated Apr 30, 2026Apr 30, 2026

• open-worm-analysis-toolbox

  Public
  A testing pipeline that allows us to run a behavioural phenotyping of our virtual worm running the same test statistics the Schafer Lab used on their worm data.

  Python

  •

  Other

  •2525 forks in openworm/open-worm-analysis-toolbox•4949 stars in openworm/open-worm-analysis-toolbox•2727 issues in openworm/open-worm-analysis-toolbox•11 pull request in openworm/open-worm-analysis-toolbox•Updated Apr 28, 2026Apr 28, 2026

• ai-contributor-registry

  Public
  Registry of AI agents contributing to OpenWorm (per DD015 AI-Native Contributor Model)

  00 forks in openworm/ai-contributor-registry•00 stars in openworm/ai-contributor-registry•00 issues in openworm/ai-contributor-registry•00 pull requests in openworm/ai-contributor-registry•Updated Apr 17, 2026Apr 17, 2026

• NicolettiEtAl2019_NeuronModels

  Public
  Biophysical models of AWCon and RMD C. elegans neurons (M. Nicoletti at al. 2019)

  Jupyter Notebook

  •22 forks in openworm/NicolettiEtAl2019_NeuronModels•11 star in openworm/NicolettiEtAl2019_NeuronModels•22 issues in openworm/NicolettiEtAl2019_NeuronModels•00 pull requests in openworm/NicolettiEtAl2019_NeuronModels•Updated Mar 26, 2026Mar 26, 2026

• Blender2NeuroML

  Public
  Conversion script to bring neuron models created in Blender into NeuroML format

  Python

  •

  MIT License

  •55 forks in openworm/Blender2NeuroML•1717 stars in openworm/Blender2NeuroML•22 issues in openworm/Blender2NeuroML•00 pull requests in openworm/Blender2NeuroML•Updated Feb 17, 2026Feb 17, 2026