Skip to content
Open
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
1 change: 1 addition & 0 deletions version_1_7_0/GaussianGraphicalModel-5/0.mrdi
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
{"_ns":{"Oscar":["https://github.com/oscar-system/Oscar.jl","1.7.0"]},"_type":{"name":"GaussianGraphicalModel","params":{"graph_type":"Graph{Directed}"}},"data":{"data":[[1],[2],[]],"_ns":{"polymake":["https://polymake.org","4.15"]},"_type":"common::GraphAdjacency<Directed>"},"attrs":{"model_ring":{"_type":{"name":"Tuple","params":[{"name":"MPolyRing","params":{"_type":"QQField"}},{"name":"Vector","params":{"name":"MPolyRingElem","params":"538b7c37-9586-4635-9691-1e0d735768f0"}}]},"data":["538b7c37-9586-4635-9691-1e0d735768f0",[[[["1","0","0","0","0","0"],"1"]],[[["0","1","0","0","0","0"],"1"]],[[["0","0","1","0","0","0"],"1"]],[[["0","0","0","1","0","0"],"1"]],[[["0","0","0","0","1","0"],"1"]],[[["0","0","0","0","0","1"],"1"]]]]}},"id":"58236bc3-6535-43da-adb6-001238f27607","_refs":{"538b7c37-9586-4635-9691-1e0d735768f0":{"_type":{"name":"MPolyRing","params":{"_type":"QQField"}},"data":{"symbols":["s[1, 1]","s[1, 2]","s[1, 3]","s[2, 2]","s[2, 3]","s[3, 3]"]}}}}
1 change: 1 addition & 0 deletions version_1_7_0/GroupBasedPhylogeneticModel-2/1.mrdi
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
{"_ns":{"Oscar":["https://github.com/oscar-system/Oscar.jl","1.7.0"]},"_type":{"name":"GroupBasedPhylogeneticModel","params":{"phylo_model":"a30d95f6-a276-4a8e-a52b-5383459791ba","group":"76ad1f19-0fa9-46c1-9401-95299de06acd"}},"data":{"fourier_parameters":["x","y"],"group_elems":[[["0"]],[["1"]]],"varnames_group_based":"q"},"id":"74913456-8072-4f6e-85dd-cca3951dd524","_refs":{"a30d95f6-a276-4a8e-a52b-5383459791ba":{"_type":{"name":"PhylogeneticModel","params":{"base_field":{"_type":"QQField"},"graph_type":"PhylogeneticTree","graph_params":{"name":"PhylogeneticTree","params":{"_type":"QQField"}}}},"data":{"graph":{"pm_tree":{"EDGE_LENGTHS":["1","1","1"],"LABELS":["","leaf 2","leaf 3","leaf 1"],"_ns":{"polymake":["https://polymake.org","4.15"]},"LEAVES":{"leaf 1":3,"leaf 2":1,"leaf 3":2},"_type":"graph::PhylogeneticTree<Rational>","ADJACENCY":[[1,2,3],[0],[0],[0]]},"vertex_perm":["4","2","3","1"]},"transition_matrix":[["a","b"],["b","a"]],"model_parameter_name":"p","n_states":"2","root_distribution":["1//2","1//2"]}},"76ad1f19-0fa9-46c1-9401-95299de06acd":{"_type":"FinGenAbGroup","data":[["2"]]}}}
1 change: 1 addition & 0 deletions version_1_7_0/PhylogeneticModel-4/0.mrdi
Original file line number Diff line number Diff line change
@@ -0,0 +1 @@
{"_ns":{"Oscar":["https://github.com/oscar-system/Oscar.jl","1.7.0"]},"_type":{"name":"PhylogeneticModel","params":{"base_field":{"_type":"QQField"},"graph_type":"PhylogeneticTree","graph_params":{"name":"PhylogeneticTree","params":{"_type":"QQField"}}}},"data":{"graph":{"pm_tree":{"EDGE_LENGTHS":["1","1","1"],"LABELS":["","leaf 2","leaf 3","leaf 1"],"_ns":{"polymake":["https://polymake.org","4.15"]},"LEAVES":{"leaf 1":3,"leaf 2":1,"leaf 3":2},"_type":"graph::PhylogeneticTree<Rational>","ADJACENCY":[[1,2,3],[0],[0],[0]]},"vertex_perm":["4","2","3","1"]},"transition_matrix":[["a","b"],["b","a"]],"model_parameter_name":"p","n_states":"2","root_distribution":["1//2","1//2"]},"attrs":{"parameter_ring":{"_type":{"name":"Tuple","params":[{"name":"MPolyRing","params":{"_type":"QQField"}},{"name":"GraphTransDict","params":{"name":"MPolyRingElem","params":"2630ef9c-20f6-48a4-8dc2-848b56c88f01"}},{"name":"Vector","params":{"name":"QQFieldElem","params":{"_type":"QQField"}}}]},"data":["2630ef9c-20f6-48a4-8dc2-848b56c88f01",[[["a",["4","3"]],[[["0","0","1","0","0","0"],"1"]]],[["b",["4","1"]],[[["0","0","0","1","0","0"],"1"]]],[["a",["4","2"]],[[["0","1","0","0","0","0"],"1"]]],[["a",["4","1"]],[[["1","0","0","0","0","0"],"1"]]],[["b",["4","3"]],[[["0","0","0","0","0","1"],"1"]]],[["b",["4","2"]],[[["0","0","0","0","1","0"],"1"]]]],["1//2","1//2"]]},"model_ring":{"_type":{"name":"Tuple","params":[{"name":"IndexedRing","params":{"_type":"QQField"}},{"name":"Dict","params":{"key_params":{"name":"Tuple","params":["Base.Int","Base.Int","Base.Int"]},"value_params":{"name":"MPolyRingElem","params":"cf130f50-07d8-4259-8830-6b24a1d5bebe"}}}]},"data":["6150f533-3a0a-4cc0-ae12-12d11a4002c3",[[["1","2","1"],[[["0","1","0","0"],"1"]]],[["1","1","1"],[[["0","0","0","1"],"1"]]],[["1","2","2"],[[["1","0","0","0"],"1"]]],[["1","1","2"],[[["0","0","1","0"],"1"]]]]]}},"id":"a30d95f6-a276-4a8e-a52b-5383459791ba","_refs":{"2630ef9c-20f6-48a4-8dc2-848b56c88f01":{"_type":{"name":"MPolyRing","params":{"_type":"QQField"}},"data":{"symbols":["a[1]","a[2]","a[3]","b[1]","b[2]","b[3]"]}},"cf130f50-07d8-4259-8830-6b24a1d5bebe":{"_type":{"name":"MPolyRing","params":{"_type":"QQField"}},"data":{"symbols":["p[1,2,2]","p[1,2,1]","p[1,1,2]","p[1,1,1]"]}},"6150f533-3a0a-4cc0-ae12-12d11a4002c3":{"_type":{"name":"IndexedRing","params":{"_type":"QQField"}},"data":{"symbols":["p[1,2,2]","p[1,2,1]","p[1,1,2]","p[1,1,1]"]}}}}