post_process: per-experiment embedding step (per-marker, SLURM, reuses aggregate_channels) - #21

Merged

gav-sturm merged 9 commits into

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alexhillsley/per-exp-embedding

Aug 20, 2026

Commits on Aug 20, 2026

post_process: per-experiment embedding step (reuses aggregate_channels)
gav-sturm
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fa93fc9
per_exp_embedding: fan markers out to SLURM (all compute off the driver)
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9ada7d0
per_exp_embedding: limit Leiden resolutions to [4,10,30]
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df28b23
paths: resolve model checkpoints from canonical base, not output dir
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7f0b642
per_exp_embedding: also write corr_heatmap.csv (downloadable values)
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9823930
per_exp_embedding: organize outputs (correlation_heatmap/ + grouped plots/)
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1d5fc3f
per_exp_embedding: split ebi/binary overlays; drop canonical guide subdir
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26dd1b2
per_exp_embedding: merge ebi overlays; move canonical_leiden under leiden/
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20d8b94
per_exp_embedding: rename leiden/canonical -> leiden/go_annotated
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85bf6a9