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add scprint-2 #326

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e07eed7
Create meta.yaml
jkobject Aug 10, 2024
16dcf19
Create meta.yaml
jkobject Aug 10, 2024
2104287
Create meta.yaml
jkobject Aug 10, 2024
ee97942
Create meta.yaml
jkobject Aug 10, 2024
694d685
Merge branch 'main' into main
jkobject Aug 13, 2024
e81b549
Merge branch 'scverse:main' into main
jkobject Nov 13, 2024
a86f3e2
Update meta.yaml
jkobject Nov 13, 2024
aa7a3fa
Update meta.yaml
jkobject Nov 13, 2024
a68d8e2
Update meta.yaml
jkobject Nov 13, 2024
81a4a4f
Update meta.yaml
jkobject Nov 13, 2024
9884857
Merge branch 'main' into main
grst Nov 16, 2024
04853c0
adding scprint-2 and scprint
jkobject Dec 28, 2025
2507c0b
Merge branch 'main' into main
jkobject Dec 28, 2025
9e42b5b
Add contact information to authors in meta.yaml
jkobject Dec 28, 2025
65666a9
Apply suggestions from code review
jkobject Dec 28, 2025
6e78a97
Apply suggestion from @Copilot
jkobject Dec 28, 2025
0db82fb
Merge branch 'main' into main
grst Mar 21, 2026
6b43e16
Add category
grst Mar 21, 2026
d02af75
Update meta.yaml
jkobject Apr 8, 2026
cec07cd
Update meta.yaml
jkobject Apr 8, 2026
44c5c3d
Update contact information in meta.yaml
jkobject Apr 8, 2026
47ddf27
Simplify contact name in meta.yaml
jkobject Apr 8, 2026
ab42152
Merge branch 'main' into main
jkobject Apr 8, 2026
499a47b
Merge branch 'main' into main
grst Jun 3, 2026
e1182fd
Update README checklist for scPRINT-2 package
jkobject Jun 7, 2026
617d3f3
Merge branch 'main' into main
jkobject Jun 21, 2026
f103940
Delete README.md
grst Jun 29, 2026
c0fa65a
restore README
grst Jun 29, 2026
d32eb93
Merge branch 'main' into main
grst Jun 30, 2026
152e487
fix github user
grst Jun 30, 2026
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6 changes: 3 additions & 3 deletions packages/GRnnData/meta.yaml
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Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
name: GRnnData
description: |
An onverload of anndata to more easily work with gene networks.
Allows easy conversion between anndata and grnndata and provide loads of usefull utilities functions.
An overload of anndata to more easily work with gene networks.
Allows easy conversion between anndata and grnndata and provide loads of useful utilities functions.
project_home: https://github.com/cantinilab/GRnnData
documentation_home: https://cantinilab.github.io/GRnnData/
publications:
Expand All @@ -17,6 +17,6 @@ tags:
license: MIT
version: v1.1.4
contact:
- jkobject
- jkobject (jeremie kalfon)
test_command: pip install . && make test
category: ecosystem
2 changes: 1 addition & 1 deletion packages/benGRN/meta.yaml
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Expand Up @@ -16,6 +16,6 @@ tags:
license: MIT
version: v1.2.1
contact:
- jkobject
- jkobject (jeremie kalfon)

@grst grst Mar 21, 2026

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CI fails because usernames are now validated against the github api:

[03/21/26 19:13:03] ERROR    ERROR:ecosystem_scripts._logging:Validation error: GRnnData: Failed to validate GitHub users      validate_registry.py:48
                             ['jkobject (jeremie kalfon)']:                                                                                           
                             - Could not resolve to a User with the login of 'jkobject (jeremie kalfon)'.

Please use plain github user IDs

@grst grst Jun 3, 2026

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not sure what went wrong, but this issue is back.

test_command: pip install . && make test
category: ecosystem
2 changes: 1 addition & 1 deletion packages/scDataLoader/meta.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -20,6 +20,6 @@ tags:
license: MIT
version: v1.2.2
contact:
- jkobject
- jkobject (jeremie kalfon)
test_command: pip install . && make test
category: ecosystem
30 changes: 30 additions & 0 deletions packages/scPRINT-2/meta.yaml
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Original file line number Diff line number Diff line change
@@ -0,0 +1,30 @@
name: scPRINT-2
description: |
A next generation single cell foundation model
project_home: https://github.com/cantinilab/scPRINT-2
documentation_home: https://cantinilab.github.io/scPRINT-2/
publications:
- 10.64898/2025.12.11.693702v2
install:
pypi: scprint2
tags:
- foundation model
- single cell
- RNAseq
- gene network inference
- denoising
- zero imputation
- label prediction
- zero shot
- embedding
- pytorch
- lightning
- species integration
- expression imputation
- counterfactual predictions
license: GPL-3.0-or-later
version: v1.0.0
contact:
- jkobject (jeremie kalfon)
test_command: pip install . && make test
category: ecosystem
2 changes: 1 addition & 1 deletion packages/scPRINT/meta.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -22,6 +22,6 @@ tags:
license: MIT
version: v1.6.2
contact:
- jkobject
- jkobject (jeremie kalfon)
test_command: pip install . && make test
category: ecosystem
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