Skip to content

Add AESTETIK to the ecosystem #383

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
KalinNonchev wants to merge 1 commit into
base: main
Choose a base branch
from
+29 −0
Open

Add AESTETIK to the ecosystem #383

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
29 changes: 29 additions & 0 deletions packages/AESTETIK/meta.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,29 @@
name: AESTETIK
description: |
Convolutional autoencoder that learns spot representations from spatial
transcriptomics by jointly integrating transcriptomics, morphology (H&E), and
spatial-neighborhood topology. The learned embeddings support downstream tasks
such as spatial-domain clustering and multi-modal analysis.
project_home: https://github.com/ratschlab/aestetik
documentation_home: https://github.com/ratschlab/aestetik#readme
tutorials_home: https://github.com/ratschlab/aestetik/tree/main/example
publications:
- 10.1093/bioinformatics/btag316
- 10.1101/2024.06.04.24308256
install:
pypi: aestetik
tags:
- spatial-omics
- spatial-transcriptomics
- representation-learning
- autoencoder
- multimodal
- computational-pathology
- deep learning
- pytorch
license: MIT
version: v0.3.1
contact:
- KalinNonchev
test_command: pip install '.[test-all]' && pytest -m "not slow"
category: ecosystem
Loading