perf: "two-pass" seurat hvg via scanpy.get.aggregate#4013
Open
ilan-gold wants to merge 85 commits into
Open
Codecov / codecov/project
succeeded
Jun 26, 2026 in 1s
79.73% (target 75.00%)
View this Pull Request on Codecov
79.73% (target 75.00%)
Details
Codecov Report
❌ Patch coverage is 92.30769% with 2 lines in your changes missing coverage. Please review.
✅ Project coverage is 79.73%. Comparing base (68eeb6a) to head (3c87db4).
✅ All tests successful. No failed tests found.
| Files with missing lines | Patch % | Lines |
|---|---|---|
| src/scanpy/preprocessing/_highly_variable_genes.py | 92.30% | 2 Missing |
Additional details and impacted files
@@ Coverage Diff @@
## main #4013 +/- ##
==========================================
+ Coverage 79.72% 79.73% +0.01%
==========================================
Files 120 120
Lines 12833 12852 +19
==========================================
+ Hits 10231 10248 +17
- Misses 2602 2604 +2 | Files with missing lines | Coverage Δ | |
|---|---|---|
| src/scanpy/preprocessing/_highly_variable_genes.py | 94.71% <92.30%> (-0.36%) |
⬇️ |
Loading