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feat: base without X_#4076

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feat: base without X_#4076
flying-sheep wants to merge 20 commits into
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naked-base

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8dee00e
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Codecov / codecov/project succeeded Jun 26, 2026 in 1s

79.89% (target 75.00%)

View this Pull Request on Codecov

79.89% (target 75.00%)

Details

Codecov Report

❌ Patch coverage is 85.11905% with 25 lines in your changes missing coverage. Please review.
✅ Project coverage is 79.89%. Comparing base (68eeb6a) to head (8dee00e).
✅ All tests successful. No failed tests found.

Files with missing lines Patch % Lines
src/scanpy/plotting/_tools/scatterplots.py 50.00% 7 Missing ⚠️
src/scanpy/tools/_ingest.py 64.28% 5 Missing ⚠️
src/scanpy/external/tl/_trimap.py 33.33% 4 Missing ⚠️
src/scanpy/external/exporting.py 50.00% 3 Missing ⚠️
src/scanpy/tools/_draw_graph.py 85.71% 3 Missing ⚠️
src/scanpy/_utils/__init__.py 92.30% 1 Missing ⚠️
src/scanpy/plotting/_utils.py 66.66% 1 Missing ⚠️
src/scanpy/tools/_utils.py 83.33% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main    #4076      +/-   ##
==========================================
+ Coverage   79.72%   79.89%   +0.17%     
==========================================
  Files         120      120              
  Lines       12833    12900      +67     
==========================================
+ Hits        10231    10307      +76     
+ Misses       2602     2593       -9     
Files with missing lines Coverage Δ
src/scanpy/_settings/presets.py 90.84% <100.00%> (+7.89%) ⬆️
src/scanpy/experimental/pp/_normalization.py 94.50% <100.00%> (+0.18%) ⬆️
src/scanpy/experimental/pp/_recipes.py 100.00% <100.00%> (ø)
src/scanpy/neighbors/__init__.py 82.23% <100.00%> (+0.18%) ⬆️
src/scanpy/plotting/_tools/__init__.py 76.17% <100.00%> (ø)
src/scanpy/plotting/_tools/paga.py 64.26% <100.00%> (ø)
src/scanpy/preprocessing/_pca/__init__.py 92.16% <100.00%> (+0.19%) ⬆️
src/scanpy/tools/_diffmap.py 82.60% <100.00%> (+0.79%) ⬆️
src/scanpy/tools/_dpt.py 66.37% <100.00%> (+0.75%) ⬆️
src/scanpy/tools/_embedding_density.py 62.29% <100.00%> (ø)
... and 10 more