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feat(preprocessing): add optimal shifted CLR (PFlog1pPF) normalization#4160

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rwbaber wants to merge 9 commits into
scverse:mainfrom
rwbaber:feature/normalize_clr
Open

feat(preprocessing): add optimal shifted CLR (PFlog1pPF) normalization#4160
rwbaber wants to merge 9 commits into
scverse:mainfrom
rwbaber:feature/normalize_clr

Merge branch 'main' into feature/normalize_clr

f344a8e
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Codecov / codecov/project succeeded Jun 24, 2026 in 1s

79.76% (target 75.00%)

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79.76% (target 75.00%)

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Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 79.76%. Comparing base (d96d91d) to head (f344a8e).
✅ All tests successful. No failed tests found.

Additional details and impacted files
@@            Coverage Diff            @@
##           main    #4160       +/-   ##
=========================================
+ Coverage      0   79.76%   +79.76%     
=========================================
  Files         0      120      +120     
  Lines         0    12860    +12860     
=========================================
+ Hits          0    10258    +10258     
- Misses        0     2602     +2602     
Files with missing lines Coverage Δ
src/scanpy/preprocessing/__init__.py 100.00% <100.00%> (ø)
src/scanpy/preprocessing/_normalization.py 97.18% <100.00%> (ø)

... and 118 files with indirect coverage changes