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Allow more than 2^32 sequences to be clustered #1039

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Cirrus CI / GCC-4.9 failed Sep 29, 2025 in 1m 1s

Task Summary

Instruction compile failed in 00:15

Details

⚠️ Not enough compute credits to prioritize tasks!

✅ 00:08 clone
✅ 00:36 install
❌ 00:15 compile

[ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o
g++-4.9: error: unrecognized command line option '-Wshorten-64-to-32'
src/CMakeFiles/mmseqs-framework.dir/build.make:78: recipe for target 'src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o' failed
make[2]: *** [src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o] Error 1
make[2]: *** Waiting for unfinished jobs....
src/CMakeFiles/mmseqs-framework.dir/build.make:134: recipe for target 'src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o' failed
make[2]: *** [src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o] Error 1
g++-4.9: error: unrecognized command line option '-Wshorten-64-to-32'
g++-4.9: error: unrecognized command line option '-Wshorten-64-to-32'
g++-4.9: error: unrecognized command line option '-Wshorten-64-to-32'
g++-4.9: error: unrecognized command line option '-Wshorten-64-to-32'
g++-4.9: error: unrecognized command line option '-Wshorten-64-to-32'
g++-4.9: error: unrecognized command line option '-Wshorten-64-to-32'
g++-4.9: error: unrecognized command line option '-Wshorten-64-to-32'
g++-4.9: error: unrecognized command line option '-Wshorten-64-to-32'
src/CMakeFiles/mmseqs-framework.dir/build.make:120: recipe for target 'src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o' failed
make[2]: *** [src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o] Error 1
src/CMakeFiles/mmseqs-framework.dir/build.make:148: recipe for target 'src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o' failed
make[2]: *** [src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o] Error 1
src/CMakeFiles/mmseqs-framework.dir/build.make:190: recipe for target 'src/CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o' failed
make[2]: *** [src/CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o] Error 1
src/CMakeFiles/mmseqs-framework.dir/build.make:162: recipe for target 'src/CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o' failed
make[2]: *** [src/CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o] Error 1
src/CMakeFiles/mmseqs-framework.dir/build.make:246: recipe for target 'src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o' failed
make[2]: *** [src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o] Error 1
src/CMakeFiles/mmseqs-framework.dir/build.make:204: recipe for target 'src/CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o' failed
make[2]: *** [src/CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o] Error 1
g++-4.9: error: unrecognized command line option '-Wshorten-64-to-32'
g++-4.9: error: unrecognized command line option '-Wshorten-64-to-32'
g++-4.9: error: unrecognized command line option '-Wshorten-64-to-32'
g++-4.9: error: unrecognized command line option '-Wshorten-64-to-32'
src/CMakeFiles/mmseqs-framework.dir/build.make:106: recipe for target 'src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o' failed
make[2]: *** [src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o] Error 1
src/CMakeFiles/mmseqs-framework.dir/build.make:232: recipe for target 'src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o' failed
g++-4.9: error: unrecognized command line option '-Wshorten-64-to-32'
make[2]: *** [src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o] Error 1
[ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o
src/CMakeFiles/mmseqs-framework.dir/build.make:92: recipe for target 'src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o' failed
make[2]: *** [src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o] Error 1
src/CMakeFiles/mmseqs-framework.dir/build.make:218: recipe for target 'src/CMakeFiles/mmseqs-framework.dir/alignment/Fwbw.cpp.o' failed
make[2]: *** [src/CMakeFiles/mmseqs-framework.dir/alignment/Fwbw.cpp.o] Error 1
src/CMakeFiles/mmseqs-framework.dir/build.make:274: recipe for target 'src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o' failed
make[2]: *** [src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o] Error 1
src/CMakeFiles/mmseqs-framework.dir/build.make:260: recipe for target 'src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o' failed
make[2]: *** [src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o] Error 1
src/CMakeFiles/mmseqs-framework.dir/build.make:176: recipe for target 'src/CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o' failed
make[2]: *** [src/CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o] Error 1
g++-4.9: error: unrecognized command line option '-Wshorten-64-to-32'
src/CMakeFiles/mmseqs-framework.dir/build.make:288: recipe for target 'src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o' failed
make[2]: *** [src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o] Error 1
CMakeFiles/Makefile2:965: recipe for target 'src/CMakeFiles/mmseqs-framework.dir/all' failed
make[1]: *** [src/CMakeFiles/mmseqs-framework.dir/all] Error 2
Makefile:135: recipe for target 'all' failed
make: *** [all] Error 2

Exit status: 2
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